Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00440000039984.a #8	ENSGT00940000160277 #9	ENSGT00950000183147.B #11	ENSGT00940000154755.c.b #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877 #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Glires	ANCESTRAL SPECIES	17	ENSGT00940000160277 #9	ENSGT00950000183147.B #11	ENSGT00940000154755.c.b #13	ENSGT00940000154755.c.a #14	ENSGT00940000164098	ENSGT00940000161877 #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Rodentia	ANCESTRAL SPECIES	18	ENSGT00950000183147.B #11	ENSGT00940000154755.c.b #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000164098	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000160277 #9	ENSGT00950000183147.B #11	ENSGT00940000154755.c.b.a #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000160277 #9	ENSGT00950000183147.B #11	ENSGT00940000154755.c.b.a #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000160277 #9	ENSGT00950000183147.B #11	ENSGT00940000154755.c.b.a #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00860000135980 #12	ENSGT00940000154755.c.b.a #13	ENSGT00940000154755.c.b.b.a ##14	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00860000135980 #12	ENSGT00940000154755.c.b.a #13	ENSGT00940000154755.c.b.b.a ##14	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #11	ENSGT00860000135980 #12	ENSGT00940000154755.c.b.a #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Golden Hamster	MODERN SPECIES	650	Acss1 (ENSMAUG00000016079) #7	Apmap (ENSMAUG00000022255) #8	Cst7 (ENSMAUG00000006797) #9	1810024B03Rik (ENSMAUG00000019265) #10	Syndig1 (ENSMAUG00000012485) #11	ENSMAUG00000013001 #12	Cst10 (ENSMAUG00000020427) #13	Cst3 (ENSMAUG00000012476) #14	Cstdc2 (ENSMAUG00000014409) #15	Cst9 (ENSMAUG00000012174) #16	Cst13 (ENSMAUG00000021851) #17	Cst12 (ENSMAUG00000010970) #18	Napb (ENSMAUG00000018004) #19	Gzf1 (ENSMAUG00000019656) #20	Nxt1 (ENSMAUG00000004141) #21	Cd93 (ENSMAUG00000019441) #22	Sstr4 (ENSMAUG00000008430) #23	Foxa2 (ENSMAUG00000016457) #24	Pax1 (ENSMAUG00000019674) #25	Nkx2-2 (ENSMAUG00000004347) #26	Nkx2-4 (ENSMAUG00000013928) #27	Xrn2 (ENSMAUG00000021842) #28	Kiz (ENSMAUG00000012933) #29	Ralgapa2 (ENSMAUG00000000917) #30	Insm1 (ENSMAUG00000008643) #31	Cfap61 (ENSMAUG00000021388) #32	ENSMAUG00000018263 #33	ENSMAUG00000014865 #34	Crnkl1 (ENSMAUG00000020764) #35	Naa20 (ENSMAUG00000016403) #36	Rin2 (ENSMAUG00000010319) #37
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001019793 #12	Cst10 (ENSCGRG00001015577) #13	ENSCGRG00001017333 ##14	ENSCGRG00001020338	ENSCGRG00001014456	ENSCGRG00001017812 #16	Cst13 (ENSCGRG00001024079) #17	Cst8 (ENSCGRG00001020750)	Cst12 (ENSCGRG00001024036) #18	Cstdc1 (ENSCGRG00001024407) ##18	Cst11 (ENSCGRG00001004859)	Cstl1 (ENSCGRG00001006313)	Napb (ENSCGRG00001015884) #19	Gzf1 (ENSCGRG00001003944) #20	ENSCGRG00001007062 #21	Cd93 (ENSCGRG00001016628) #22	Thbd (ENSCGRG00001010215)	Sstr4 (ENSCGRG00001010896) #23	Foxa2 (ENSCGRG00001000494) #24	Pax1 (ENSCGRG00001009223) #25	Nkx2-2 (ENSCGRG00001013924) #26	ENSCGRG00001016394	Nkx2-4 (ENSCGRG00001002742) #27	Xrn2 (ENSCGRG00001010676) #28	Kiz (ENSCGRG00001020800) #29	Ralgapa2 (ENSCGRG00001024249) #30	Insm1 (ENSCGRG00001011430) #31	Cfap61 (ENSCGRG00001022702) #32	Slc24a3 (ENSCGRG00001004364)	Scp2d1 (ENSCGRG00001008412)	Dtd1 (ENSCGRG00001008221)
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00950000183147.B #11	ENSGT00860000135980 #12	ENSGT00940000154755.c.b.a #13	ENSGT00940000154755.c.b.b.a ##14	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Northern American deer mouse	MODERN SPECIES	17	Syndig1 (ENSPEMG00000002878) #11	Cst10 (ENSPEMG00000018501) #13	ENSPEMG00000025257	ENSPEMG00000028985 ##14	Cst3 (ENSPEMG00000019347) #14	Cst9 (ENSPEMG00000020106) #16	Cst13 (ENSPEMG00000005338) #17	Cst8 (ENSPEMG00000030932)	Cst12 (ENSPEMG00000000557) #18	Cstdc1 (ENSPEMG00000018705) ##18	Cst11 (ENSPEMG00000000143)	Cstl1 (ENSPEMG00000015396)	Napb (ENSPEMG00000014658) #19	Gzf1 (ENSPEMG00000011285) #20	Nxt1 (ENSPEMG00000010397) #21	Cd93 (ENSPEMG00000009909) #22	Thbd (ENSPEMG00000013258)	Sstr4 (ENSPEMG00000013404) #23	Foxa2 (ENSPEMG00000018383) #24	ENSPEMG00000013352	Pax1 (ENSPEMG00000013032) #25	Nkx2-2 (ENSPEMG00000031205) #26	Xrn2 (ENSPEMG00000000111) #28	Kiz (ENSPEMG00000019926) #29	ENSPEMG00000018301	Ralgapa2 (ENSPEMG00000015207) #30	Insm1 (ENSPEMG00000011704) #31	Cfap61 (ENSPEMG00000019999) #32	Crnkl1 (ENSPEMG00000000073) #35	Naa20 (ENSPEMG00000019944) #36	Rin2 (ENSPEMG00000007218) #37
Prairie vole	MODERN SPECIES	86				Cst3 (ENSMOCG00000018857) #14	Cstdc2 (ENSMOCG00000021896) #15	Cst13 (ENSMOCG00000012990) #17	Cst8 (ENSMOCG00000020831)	Cst12 (ENSMOCG00000013277) #18	Cstdc1 (ENSMOCG00000015424) ##18	Cst11 (ENSMOCG00000016678)	Cstl1 (ENSMOCG00000019330)	Napb (ENSMOCG00000000502) #19	Gzf1 (ENSMOCG00000017816) #20	Nxt1 (ENSMOCG00000018712) #21	ENSMOCG00000014565	Cd93 (ENSMOCG00000008988) #22	Thbd (ENSMOCG00000004558)	Sstr4 (ENSMOCG00000004743) #23	Foxa2 (ENSMOCG00000017025) #24	Pax1 (ENSMOCG00000000474) #25	Nkx2-2 (ENSMOCG00000016851) #26	Nkx2-4 (ENSMOCG00000012451) #27	Xrn2 (ENSMOCG00000012588) #28	Kiz (ENSMOCG00000022509) #29	ENSMOCG00000020632	Ralgapa2 (ENSMOCG00000015663) #30	Insm1 (ENSMOCG00000010418) #31	Cfap61 (ENSMOCG00000001829) #32	ENSMOCG00000000681 #35	ENSMOCG00000021892 #36	Rin2 (ENSMOCG00000011014) #37
Murinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #11	ENSGT00860000135980 #12	ENSGT00940000154755.c.b.a #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Mus	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #11	ENSGT00860000135980 #12	ENSGT00940000154755.c.b.a #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Mus_A	ANCESTRAL SPECIES		ENSGT00950000183147.B #11	ENSGT00860000135980 #12	ENSGT00940000154755.c.b.a #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00970000195442	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931.m #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00860000135980 #12	ENSGT00940000154755.c.b.a #13	ENSGT00940000172008	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00970000195442	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931.m #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Mouse	MODERN SPECIES	11	Syndig1 (ENSMUSG00000074736) #11	Cst10 (ENSMUSG00000033156) #13	Gm1330 (ENSMUSG00000063507)	Cst3 (ENSMUSG00000027447) #14	Cstdc2 (ENSMUSG00000027446) #15	Cst9 (ENSMUSG00000027445) #16	Cst13 (ENSMUSG00000036924) #17	Cst8 (ENSMUSG00000027442)	Cst12 (ENSMUSG00000027443) #18	Cstdc1 (ENSMUSG00000027444) ##18	Cst11 (ENSMUSG00000036958)	Cstl1 (ENSMUSG00000055177)	Napb (ENSMUSG00000027438) #19	Gzf1 (ENSMUSG00000027439) #20	Nxt1 (ENSMUSG00000036992) #21	Cd93 (ENSMUSG00000027435) #22	Thbd (ENSMUSG00000074743)	Sstr4 (ENSMUSG00000037014) #23	Foxa2 (ENSMUSG00000037025) #24	Pax1 (ENSMUSG00000037034) #25	Nkx2-2 (ENSMUSG00000027434) #26	Nkx2-4 (ENSMUSG00000054160) #27	Xrn2 (ENSMUSG00000027433) #28	Kiz (ENSMUSG00000074749) #29	Ralgapa2 (ENSMUSG00000037110) #30	Insm1 (ENSMUSG00000068154) #31	Cfap61 (ENSMUSG00000037143) #32	Crnkl1 (ENSMUSG00000001767) #35	Naa20 (ENSMUSG00000002728) #36	Rin2 (ENSMUSG00000001768) #37	Slc24a3 (ENSMUSG00000063873)
Mus_C	ANCESTRAL SPECIES		ENSGT00860000135980 #12	ENSGT00940000154755.c.b.a #13	ENSGT00940000172008	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.a #15	ENSGT00940000161877.c.b #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00970000195442	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #32	ENSGT00550000074931.m #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
spretus	MODERN SPECIES	11	Syndig1 (MGP_SPRETEiJ_G0025340) #11	Cst10 (MGP_SPRETEiJ_G0025339) #13	MGP_SPRETEiJ_G0025338	Cst3 (MGP_SPRETEiJ_G0025337) #14	Cstdc2 (MGP_SPRETEiJ_G0025336) #15	Cst9 (MGP_SPRETEiJ_G0025335) #16	Cst13 (MGP_SPRETEiJ_G0025334) #17	Cst8 (MGP_SPRETEiJ_G0025333)	Cst12 (MGP_SPRETEiJ_G0025332) #18	Cstdc1 (MGP_SPRETEiJ_G0025331) ##18	Cst11 (MGP_SPRETEiJ_G0025330)	Cstl1 (MGP_SPRETEiJ_G0025329)	Napb (MGP_SPRETEiJ_G0025328) #19	Gzf1 (MGP_SPRETEiJ_G0025327) #20	Nxt1 (MGP_SPRETEiJ_G0025326) #21	Cd93 (MGP_SPRETEiJ_G0025325) #22	Thbd (MGP_SPRETEiJ_G0025324)	Sstr4 (MGP_SPRETEiJ_G0025323) #23	Foxa2 (MGP_SPRETEiJ_G0025322) #24	Pax1 (MGP_SPRETEiJ_G0025321) #25	Nkx2-2 (MGP_SPRETEiJ_G0025320) #26	Nkx2-4 (MGP_SPRETEiJ_G0025319) #27	Xrn2 (MGP_SPRETEiJ_G0025318) #28	MGP_SPRETEiJ_G0025317	Kiz (MGP_SPRETEiJ_G0025316) #29	Ralgapa2 (MGP_SPRETEiJ_G0025315) #30	Insm1 (MGP_SPRETEiJ_G0025314) #31	Cfap61 (MGP_SPRETEiJ_G0025313) #32	Crnkl1 (MGP_SPRETEiJ_G0025312) #35	Naa20 (MGP_SPRETEiJ_G0025311) #36	Rin2 (MGP_SPRETEiJ_G0025310) #37
Steppe mouse	MODERN SPECIES	41			Cst3 (ENSMSIG00000003295) #14	Cstdc2 (ENSMSIG00000003283) #15	Cst9 (ENSMSIG00000003261) #16	Cst13 (ENSMSIG00000003223) #17	Cst8 (ENSMSIG00000003194)	Cst12 (ENSMSIG00000003169) #18	Cstdc1 (ENSMSIG00000003153) ##18	Cst11 (ENSMSIG00000003137)	Cstl1 (ENSMSIG00000003118)	Napb (ENSMSIG00000003094) #19	Gzf1 (ENSMSIG00000003080) #20	Nxt1 (ENSMSIG00000003067) #21	ENSMSIG00000003019	Cd93 (ENSMSIG00000002996) #22	Thbd (ENSMSIG00000002989)	Sstr4 (ENSMSIG00000002973) #23	Foxa2 (ENSMSIG00000002945) #24
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0024422 #12	Syndig1 (MGP_CAROLIEiJ_G0024421) #11	Cst10 (MGP_CAROLIEiJ_G0024420) #13	Cst3 (MGP_CAROLIEiJ_G0024419) #14	Cstdc2 (MGP_CAROLIEiJ_G0024418) #15	Cst9 (MGP_CAROLIEiJ_G0024417) #16	Cst13 (MGP_CAROLIEiJ_G0024416) #17	Cst8 (MGP_CAROLIEiJ_G0024415)	Cst12 (MGP_CAROLIEiJ_G0024414) #18	Cstdc1 (MGP_CAROLIEiJ_G0024413) ##18	Cst11 (MGP_CAROLIEiJ_G0024412)	Cstl1 (MGP_CAROLIEiJ_G0024411)	Napb (MGP_CAROLIEiJ_G0024410) #19	Gzf1 (MGP_CAROLIEiJ_G0024409) #20	Nxt1 (MGP_CAROLIEiJ_G0024408) #21	Cd93 (MGP_CAROLIEiJ_G0024407) #22	Thbd (MGP_CAROLIEiJ_G0024406)	Sstr4 (MGP_CAROLIEiJ_G0024405) #23	Foxa2 (MGP_CAROLIEiJ_G0024404) #24	Pax1 (MGP_CAROLIEiJ_G0024403) #25	Nkx2-2 (MGP_CAROLIEiJ_G0024402) #26	Nkx2-4 (MGP_CAROLIEiJ_G0024401) #27	Xrn2 (MGP_CAROLIEiJ_G0024400) #28	MGP_CAROLIEiJ_G0024399	Kiz (MGP_CAROLIEiJ_G0024398) #29	Ralgapa2 (MGP_CAROLIEiJ_G0024397) #30	Insm1 (MGP_CAROLIEiJ_G0024396) #31	Cfap61 (MGP_CAROLIEiJ_G0024395) #32	Crnkl1 (MGP_CAROLIEiJ_G0024394) #35	Naa20 (MGP_CAROLIEiJ_G0024393) #36	Rin2 (MGP_CAROLIEiJ_G0024392) #37
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025865 #10	MGP_PahariEiJ_G0025864 #12	Syndig1 (MGP_PahariEiJ_G0025863) #11	Cst10 (MGP_PahariEiJ_G0025862) #13	Cst3 (MGP_PahariEiJ_G0025861) #14	Cstdc2 (MGP_PahariEiJ_G0025860) #15	Cst13 (MGP_PahariEiJ_G0025859) #17	Cst8 (MGP_PahariEiJ_G0025858)	Cst12 (MGP_PahariEiJ_G0025857) #18	Cstdc1 (MGP_PahariEiJ_G0025856) ##18	Cst11 (MGP_PahariEiJ_G0025855)	Cstl1 (MGP_PahariEiJ_G0025854)	Napb (MGP_PahariEiJ_G0025853) #19	Gzf1 (MGP_PahariEiJ_G0025852) #20	Nxt1 (MGP_PahariEiJ_G0025851) #21	Cd93 (MGP_PahariEiJ_G0025850) #22	Thbd (MGP_PahariEiJ_G0025849)	Sstr4 (MGP_PahariEiJ_G0025848) #23	Foxa2 (MGP_PahariEiJ_G0025847) #24	Pax1 (MGP_PahariEiJ_G0025846) #25	Nkx2-2 (MGP_PahariEiJ_G0025845) #26	Nkx2-4 (MGP_PahariEiJ_G0025844) #27	Xrn2 (MGP_PahariEiJ_G0025843) #28	Kiz (MGP_PahariEiJ_G0025842) #29	Ralgapa2 (MGP_PahariEiJ_G0025841) #30	Insm1 (MGP_PahariEiJ_G0025840) #31	Cfap61 (MGP_PahariEiJ_G0025839) #32	Crnkl1 (MGP_PahariEiJ_G0025838) #35	Naa20 (MGP_PahariEiJ_G0025837) #36	Rin2 (MGP_PahariEiJ_G0025836) #37	MGP_PahariEiJ_G0025835
Rat	MODERN SPECIES	13	Fth1-ps5 (ENSRNOG00000033100)	Andpro (ENSRNOG00000031840) ##14	AABR07054186.1 (ENSRNOG00000032769)	Cst3 (ENSRNOG00000005195) #14	Cstdc2 (ENSRNOG00000005178) #15	Cst9l (ENSRNOG00000005162) #16	Cst13 (ENSRNOG00000005103) #17	Cst8 (ENSRNOG00000004989)	Cst12 (ENSRNOG00000004946) #18	LOC257643 (ENSRNOG00000004858) ##18	Cst11 (ENSRNOG00000004808)	Cstl1 (ENSRNOG00000004779)	Napb (ENSRNOG00000004753) #19	Gzf1 (ENSRNOG00000004735) #20	Nxt1 (ENSRNOG00000004700) #21	Cd93 (ENSRNOG00000024799) #22	Thbd (ENSRNOG00000004687)	Sstr4 (ENSRNOG00000004641) #23	Foxa2 (ENSRNOG00000013133) #24	Pax1 (ENSRNOG00000024882) #25	Nkx2-2 (ENSRNOG00000012728) #26	Nkx2-4 (ENSRNOG00000012647) #27	Xrn2 (ENSRNOG00000011785) #28	Kiz (ENSRNOG00000025141) #29	ENSRNOG00000070752	Ralgapa2 (ENSRNOG00000036964) #30	Insm1 (ENSRNOG00000068937) #31	AABR07054096.1 (ENSRNOG00000011028) #32	Crnkl1 (ENSRNOG00000010587) #35	Naa20 (ENSRNOG00000010523) #36	Rin2 (ENSRNOG00000010131) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	353											Cst11 (ENSNGAG00000023054)	Cstl1 (ENSNGAG00000023212)	Napb (ENSNGAG00000023681) #19	Gzf1 (ENSNGAG00000024012) #20	Nxt1 (ENSNGAG00000000803) #21	Cd93 (ENSNGAG00000013591) #22	Sstr4 (ENSNGAG00000012473) #23
Lesser Egyptian jerboa	MODERN SPECIES	159						Cst3 (ENSJJAG00000013565) #14	Cst9 (ENSJJAG00000013510) #16	Cst13 (ENSJJAG00000013369) #17	Cst8 (ENSJJAG00000013212)	Cst12 (ENSJJAG00000012500) #18	Cstdc1 (ENSJJAG00000012315) ##18	Cstl1 (ENSJJAG00000011653)	Napb (ENSJJAG00000010872) #19	Gzf1 (ENSJJAG00000008172) #20	ENSJJAG00000012022 #21	Cd93 (ENSJJAG00000007591) #22	Sstr4 (ENSJJAG00000023336) #23	Foxa2 (ENSJJAG00000023228) #24	Pax1 (ENSJJAG00000023177) #25	Nkx2-2 (ENSJJAG00000022426) #26	Nkx2-4 (ENSJJAG00000022335) #27	Xrn2 (ENSJJAG00000022128) #28	Kiz (ENSJJAG00000021546) #29	ENSJJAG00000020834	ENSJJAG00000020710 #30	ENSJJAG00000020467 #30	Insm1 (ENSJJAG00000020276) #31	Cfap61 (ENSJJAG00000018922) #32	Crnkl1 (ENSJJAG00000016926) #35	Naa20 (ENSJJAG00000016004) #36	ENSJJAG00000015745 #37
Kangaroo rat	MODERN SPECIES	418	Pygb (ENSDORG00000007176)	Entpd6 (ENSDORG00000007175)	Vsx1 (ENSDORG00000005490)	Acss1 (ENSDORG00000004006) #7	Apmap (ENSDORG00000025391) #8	Cst7 (ENSDORG00000005298) #9	Syndig1 (ENSDORG00000003111) #11	ENSDORG00000008948 #13	Cst3 (ENSDORG00000027673) #14	Cst13 (ENSDORG00000027228) #17	Cst8 (ENSDORG00000011859)	Cst12 (ENSDORG00000023744) #18	Napb (ENSDORG00000011856) #19	Gzf1 (ENSDORG00000011855) #20	Nxt1 (ENSDORG00000024690) #21	Cd93 (ENSDORG00000028704) #22	Sstr4 (ENSDORG00000010486) #23	Foxa2 (ENSDORG00000027269) #24	Pax1 (ENSDORG00000016051) #25	Nkx2-2 (ENSDORG00000007972) #26	Nkx2-4 (ENSDORG00000023542) #27	Xrn2 (ENSDORG00000005434) #28	ENSDORG00000024554 #30	ENSDORG00000025962 #30	Insm1 (ENSDORG00000009864) #31	ENSDORG00000000395	ENSDORG00000029623 #32	ENSDORG00000024717 #32	ENSDORG00000000394 #35	Naa20 (ENSDORG00000028339) #36	Rin2 (ENSDORG00000000392) #37
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000154755.c.b #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.d ##16	ENSGT00940000164098	ENSGT00940000161877.c.b #16	ENSGT00940000161877.c.a #15	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000154755.c.b.e #13	ENSGT00940000154755.c.a #14	ENSGT00940000164098	ENSGT00940000161877.c.b #16	ENSGT00940000161877.d ##16	ENSGT00940000161877.c.a #15	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000154755.c.b.f #13	ENSGT00940000154755.c.b.e #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.b #16	ENSGT00940000161877.d ##16	ENSGT00940000161877.c.a #15	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00390000007696.e.a.a.a	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36
Marmotini_b	ANCESTRAL SPECIES	140	ENSGT00940000154755.c.b.f #13	ENSGT00940000154755.c.b.e #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.c.b #16	ENSGT00940000161877.d ##16	ENSGT00940000161877.c.a #15	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00390000007696.e.a.a.a
Squirrel	MODERN SPECIES	220	ENSSTOG00000023496	ENSSTOG00000026963 #14	ENSSTOG00000015564 #16	ENSSTOG00000028869 ##16	ENSSTOG00000004129 #17	ENSSTOG00000020102	CST8 (ENSSTOG00000004122)	ENSSTOG00000024532 #18	ENSSTOG00000021841 ##18	CST11 (ENSSTOG00000004847)	CSTL1 (ENSSTOG00000024563)	NAPB (ENSSTOG00000022350) #19	ENSSTOG00000030626	GZF1 (ENSSTOG00000009820) #20	NXT1 (ENSSTOG00000026331) #21	CD93 (ENSSTOG00000024530) #22	SSTR4 (ENSSTOG00000021697) #23	FOXA2 (ENSSTOG00000020150) #24	PAX1 (ENSSTOG00000003000) #25	NKX2-2 (ENSSTOG00000021450) #26	XRN2 (ENSSTOG00000000589) #28	KIZ (ENSSTOG00000007449) #29
Arctic ground squirrel	MODERN SPECIES	114	ENSUPAG00010009918 #16	ENSUPAG00010009902 #15	ENSUPAG00010009895 #17	CST8 (ENSUPAG00010009884)	ENSUPAG00010009878 #18	ENSUPAG00010009872 ##18	CST11 (ENSUPAG00010009858)	CSTL1 (ENSUPAG00010009856)	ENSUPAG00010009855	ENSUPAG00010009850	NAPB (ENSUPAG00010009788) #19	GZF1 (ENSUPAG00010009780) #20	NXT1 (ENSUPAG00010009776) #21	ENSUPAG00010009772	ENSUPAG00010009759	CD93 (ENSUPAG00010009758) #22	THBD (ENSUPAG00010009753)	SSTR4 (ENSUPAG00010009751) #23	FOXA2 (ENSUPAG00010009738) #24	ENSUPAG00010009726	PAX1 (ENSUPAG00010009718) #25	NKX2-2 (ENSUPAG00010009710) #26	NKX2-4 (ENSUPAG00010009706) #27	XRN2 (ENSUPAG00010009667) #28	KIZ (ENSUPAG00010009237) #29	ENSUPAG00010009220
Alpin marmot	MODERN SPECIES		SYNDIG1 (ENSMMMG00000004598) #11	ENSMMMG00000004547 #13	ENSMMMG00000004528 #14	ENSMMMG00000004523 #16	ENSMMMG00000004513 #17	CST8 (ENSMMMG00000004504)	ENSMMMG00000004491 #18	ENSMMMG00000004483 ##18	CST11 (ENSMMMG00000004467)	CSTL1 (ENSMMMG00000004456)	ENSMMMG00000004433	NAPB (ENSMMMG00000004419) #19	GZF1 (ENSMMMG00000004407) #20	NXT1 (ENSMMMG00000004405) #21	ENSMMMG00000004398	CD93 (ENSMMMG00000004395) #22	THBD (ENSMMMG00000004391)	SSTR4 (ENSMMMG00000004385) #23	FOXA2 (ENSMMMG00000004350) #24	PAX1 (ENSMMMG00000004326) #25	NKX2-2 (ENSMMMG00000004284) #26	XRN2 (ENSMMMG00000004161) #28	KIZ (ENSMMMG00000003881) #29	ENSMMMG00000003871	RALGAPA2 (ENSMMMG00000003453) #30	ENSMMMG00000003417	ENSMMMG00000003408 #32	ENSMMMG00000003290 #32	CRNKL1 (ENSMMMG00000003244) #35	NAA20 (ENSMMMG00000003240) #36	RIN2 (ENSMMMG00000003172) #37
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005012618	ENSSVLG00005012635 #14	ENSSVLG00005012678	ENSSVLG00005012749 #16	ENSSVLG00005012823 ##16	ENSSVLG00005012871 #17	CST8 (ENSSVLG00005000126)	ENSSVLG00005000133 #18	ENSSVLG00005000139 ##18	CST11 (ENSSVLG00005000162)	CSTL1 (ENSSVLG00005000168)	NAPB (ENSSVLG00005000227) #19	GZF1 (ENSSVLG00005000288) #20	ENSSVLG00005000304 #21	ENSSVLG00005000317 #21	CD93 (ENSSVLG00005000330) #22	THBD (ENSSVLG00005000349)	SSTR4 (ENSSVLG00005000359) #23	ENSSVLG00005000368	FOXA2 (ENSSVLG00005000389) #24	ENSSVLG00005000403	PAX1 (ENSSVLG00005000421) #25	NKX2-2 (ENSSVLG00005000441) #26	NKX2-4 (ENSSVLG00005000455) #27	XRN2 (ENSSVLG00005000470) #28	KIZ (ENSSVLG00005000513) #29	ENSSVLG00005000546	RALGAPA2 (ENSSVLG00005000611) #30	INSM1 (ENSSVLG00005000689) #31	CFAP61 (ENSSVLG00005000731) #32	ENSSVLG00005000777
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158550 #7	ENSGT00440000039984.a #8	ENSGT00940000160277 #9	ENSGT00950000183147.B #11	ENSGT00940000154755.c.b #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.d ##16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996	ENSGT00390000004987.n.a #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00440000039984.a #8	ENSGT00940000160277 #9	ENSGT00950000183147.B #11	ENSGT00940000154755.c.b.c #13	ENSGT00940000154755.c.b.d #13	ENSGT00940000154755.c.a #14	ENSGT00940000161877.d ##16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996	ENSGT00390000004987.n.a #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000158550 #7	ENSGT00440000039984.a #8	ENSGT00940000160277 #9	ENSGT00950000183147.B #11	ENSGT00940000154755.c.b.c #13	ENSGT00940000154755.c.b.d #13	ENSGT00940000154755.c.a #14	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996	ENSGT00390000004987.n.a #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Long-tailed chinchilla	MODERN SPECIES	122	VSX1 (ENSCLAG00000015160)	ACSS1 (ENSCLAG00000012190) #7	APMAP (ENSCLAG00000013445) #8	CST7 (ENSCLAG00000015428) #9	SYNDIG1 (ENSCLAG00000012586) #11	ENSCLAG00000012454 #13	ENSCLAG00000015899 #13	ENSCLAG00000017066 #17	ENSCLAG00000015212	ENSCLAG00000015474 #18	ENSCLAG00000011384	CSTL1 (ENSCLAG00000012446)	NAPB (ENSCLAG00000011540) #19	GZF1 (ENSCLAG00000014714) #20	NXT1 (ENSCLAG00000012493) #21	CD93 (ENSCLAG00000012062) #22	THBD (ENSCLAG00000011994)	FOXA2 (ENSCLAG00000014548) #24	PAX1 (ENSCLAG00000016362) #25	NKX2-2 (ENSCLAG00000016430) #26	XRN2 (ENSCLAG00000013419) #28	KIZ (ENSCLAG00000012565) #29	RALGAPA2 (ENSCLAG00000012502) #30	CFAP61 (ENSCLAG00000014155) #32	CRNKL1 (ENSCLAG00000013859) #35	NAA20 (ENSCLAG00000014313) #36	RIN2 (ENSCLAG00000015234) #37	SLC24A3 (ENSCLAG00000015547)	DTD1 (ENSCLAG00000015302)	SEC23B (ENSCLAG00000014924)	RBBP9 (ENSCLAG00000014851)
Degu	MODERN SPECIES	114	VSX1 (ENSODEG00000010102)	ACSS1 (ENSODEG00000010733) #7	APMAP (ENSODEG00000010678) #8	CST7 (ENSODEG00000011264) #9	SYNDIG1 (ENSODEG00000012369) #11	ENSODEG00000019797	CST3 (ENSODEG00000012334) #14	ENSODEG00000010611 #17	ENSODEG00000010448	ENSODEG00000012595 #18	CST11 (ENSODEG00000013274)	CSTL1 (ENSODEG00000010719)	NAPB (ENSODEG00000011065) #19	GZF1 (ENSODEG00000013020) #20	NXT1 (ENSODEG00000019900) #21	CD93 (ENSODEG00000012518) #22	THBD (ENSODEG00000010709)	FOXA2 (ENSODEG00000011162) #24	PAX1 (ENSODEG00000012427) #25	ENSODEG00000019878	ENSODEG00000019885	NKX2-2 (ENSODEG00000012371) #26	ENSODEG00000012687	NKX2-4 (ENSODEG00000010842) #27	ENSODEG00000010745 #28	ENSODEG00000011188	KIZ (ENSODEG00000011491) #29	RALGAPA2 (ENSODEG00000011023) #30	INSM1 (ENSODEG00000020028) #31	ENSODEG00000011346	ENSODEG00000012124 #32
Guinea pig	MODERN SPECIES	8	APMAP (ENSCPOG00000008131) #8	CST7 (ENSCPOG00000008022) #9	SYNDIG1 (ENSCPOG00000004943) #11	ENSCPOG00000026799 #13	ENSCPOG00000030984 #13	ENSCPOG00000030716 #14	ENSCPOG00000025294 ##16	ENSCPOG00000021926 #17	CST8 (ENSCPOG00000005550)	ENSCPOG00000025993 #18	ENSCPOG00000003822	CSTL1 (ENSCPOG00000008734)	NAPB (ENSCPOG00000039063) #19	GZF1 (ENSCPOG00000010790) #20	NXT1 (ENSCPOG00000008817) #21	CD93 (ENSCPOG00000010252) #22	THBD (ENSCPOG00000030575)	FOXA2 (ENSCPOG00000033370) #24	PAX1 (ENSCPOG00000002886) #25	NKX2-2 (ENSCPOG00000000408) #26	XRN2 (ENSCPOG00000009407) #28	KIZ (ENSCPOG00000005683) #29	RALGAPA2 (ENSCPOG00000001602) #30	ENSCPOG00000038064	ENSCPOG00000039658 #32	ENSCPOG00000001594 #32	CRNKL1 (ENSCPOG00000004418) #35	NAA20 (ENSCPOG00000001593) #36	RIN2 (ENSCPOG00000013179) #37	SLC24A3 (ENSCPOG00000011970)	DTD1 (ENSCPOG00000002416)
Lagomorpha	ANCESTRAL SPECIES	57							ENSGT00940000154755.c.a #14	ENSGT00940000161877 #16	ENSGT00940000163249 #17	ENSGT00940000162294	ENSGT00940000162636.B ##18	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00670000098098 #28	ENSGT00390000010121 #29	ENSGT00950000183139.A #30	ENSGT00390000004987 #32	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b	ENSGT00390000006916.c	ENSGT00390000014861
Rabbit	MODERN SPECIES	15	ENSOCUG00000008071 #14	ENSOCUG00000036359	ENSOCUG00000032386	ENSOCUG00000021033 #16	ENSOCUG00000024585 #16	ENSOCUG00000029526 #16	ENSOCUG00000026263 #17	CST8 (ENSOCUG00000024979)	ENSOCUG00000027150 ##18	CSTL1 (ENSOCUG00000024430)	ENSOCUG00000025538	NAPB (ENSOCUG00000009263) #19	ENSOCUG00000025214 #20	NXT1 (ENSOCUG00000025924) #21	ENSOCUG00000024138	CD93 (ENSOCUG00000014812) #22	FOXA2 (ENSOCUG00000007368) #24	PAX1 (ENSOCUG00000003276) #25	NKX2-2 (ENSOCUG00000007166) #26	ENSOCUG00000024195	XRN2 (ENSOCUG00000013468) #28	KIZ (ENSOCUG00000013848) #29	RALGAPA2 (ENSOCUG00000017951) #30	CFAP61 (ENSOCUG00000015506) #32	CRNKL1 (ENSOCUG00000015484) #35	NAA20 (ENSOCUG00000015481) #36	RIN2 (ENSOCUG00000015450) #37	SLC24A3 (ENSOCUG00000009833)	ENSOCUG00000035674	SCP2D1 (ENSOCUG00000010991)	DTD1 (ENSOCUG00000010988)
Pika	MODERN SPECIES	6732															NXT1 (ENSOPRG00000006167) #21	CD93 (ENSOPRG00000006161) #22	FOXA2 (ENSOPRG00000006139) #24
Tree shrew	MODERN SPECIES	1130																CD93 (ENSTBEG00000014371) #22