Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Primates	ANCESTRAL SPECIES	17	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Cebidae	ANCESTRAL SPECIES	13	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Marmoset	MODERN SPECIES	17	CST7 (ENSCJAG00000048473) #7	APMAP (ENSCJAG00000085161) #8	SYNDIG1 (ENSCJAG00000046278) #9	CST5 (ENSCJAG00000037422) #10	ENSCJAG00000000676 #11	CST3 (ENSCJAG00000036809) #12	CST9 (ENSCJAG00000084681) #13	ENSCJAG00000078884 #14	CST8 (ENSCJAG00000000697) #15	ENSCJAG00000074097 #16	CST11 (ENSCJAG00000080392) #17	CSTL1 (ENSCJAG00000041540) #18	NAPB (ENSCJAG00000000712) #19	GZF1 (ENSCJAG00000000733) #20	NXT1 (ENSCJAG00000044836) #21	CD93 (ENSCJAG00000005796) #22	THBD (ENSCJAG00000005795) #23	FOXA2 (ENSCJAG00000005785) #24	ENSCJAG00000070048 #25	ENSCJAG00000075555 #26	PAX1 (ENSCJAG00000005773) #27	ENSCJAG00000070559 #28	ENSCJAG00000076879 #29	ENSCJAG00000051781 #30	ENSCJAG00000081459 #31	NKX2-4 (ENSCJAG00000040336) #32	XRN2 (ENSCJAG00000005611) #33	KIZ (ENSCJAG00000005568) #34	RALGAPA2 (ENSCJAG00000005471) #35	INSM1 (ENSCJAG00000040556) #36	CFAP61 (ENSCJAG00000005444) #37
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Capuchin	MODERN SPECIES	134	APMAP (ENSCCAG00000023838) #8	CST7 (ENSCCAG00000027578) #7	SYNDIG1 (ENSCCAG00000028638) #9	CST5 (ENSCCAG00000034182) #10	ENSCCAG00000033223 #11	CST3 (ENSCCAG00000001843) #12	CST9 (ENSCCAG00000024829) #13	CST9L (ENSCCAG00000026509)	CST8 (ENSCCAG00000024862) #15	ENSCCAG00000037786 #16	CST11 (ENSCCAG00000035766) #17	CSTL1 (ENSCCAG00000033212) #18	NAPB (ENSCCAG00000029344) #19	GZF1 (ENSCCAG00000035601) #20	NXT1 (ENSCCAG00000015478) #21	CD93 (ENSCCAG00000034013) #22	THBD (ENSCCAG00000020711) #23	SSTR4 (ENSCCAG00000019059)	FOXA2 (ENSCCAG00000027576) #24	PAX1 (ENSCCAG00000025569) #27	NKX2-2 (ENSCCAG00000035862) #30	NKX2-4 (ENSCCAG00000032197) #32	ENSCCAG00000036857 #33	KIZ (ENSCCAG00000031682) #34	RALGAPA2 (ENSCCAG00000028362) #35	INSM1 (ENSCCAG00000023181) #36	CFAP61 (ENSCCAG00000026777) #37	CRNKL1 (ENSCCAG00000027037)	NAA20 (ENSCCAG00000028274)
Bolivian squirrel monkey	MODERN SPECIES	211	APMAP (ENSSBOG00000035251) #8	CST7 (ENSSBOG00000021587) #7	SYNDIG1 (ENSSBOG00000023812) #9	CST5 (ENSSBOG00000022942) #10	ENSSBOG00000028716 #11	CST3 (ENSSBOG00000030007) #12	CST9 (ENSSBOG00000020759) #13	CST9L (ENSSBOG00000020799)	CST8 (ENSSBOG00000021877) #15	ENSSBOG00000025115 #16	CST11 (ENSSBOG00000025613) #17	CSTL1 (ENSSBOG00000006474) #18	NAPB (ENSSBOG00000019980) #19	GZF1 (ENSSBOG00000018893) #20	NXT1 (ENSSBOG00000036378) #21	CD93 (ENSSBOG00000018965) #22	SSTR4 (ENSSBOG00000013012)	FOXA2 (ENSSBOG00000024799) #24
Mas night monkey	MODERN SPECIES	720																CD93 (ENSANAG00000031974) #22	SSTR4 (ENSANAG00000031033)	FOXA2 (ENSANAG00000000151) #24	PAX1 (ENSANAG00000031911) #27	NKX2-2 (ENSANAG00000031496) #30	NKX2-4 (ENSANAG00000025954) #32	XRN2 (ENSANAG00000020126) #33	KIZ (ENSANAG00000030324) #34	RALGAPA2 (ENSANAG00000035297) #35	ENSANAG00000025204	INSM1 (ENSANAG00000021754) #36	ENSANAG00000026688 #37	ENSANAG00000033104 #37	ENSANAG00000023984	CRNKL1 (ENSANAG00000024889)	ENSANAG00000021111
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00940000164560 #10	ENSGT00940000163410 #11	ENSGT00860000135650	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00940000163410.a.a #11	ENSGT00860000135650	ENSGT00940000163410.a.b.a #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hominidae	ANCESTRAL SPECIES	18	ENSGT00860000135650	ENSGT00940000163410.a.b.a #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00860000135650	ENSGT00940000163410.a.b.a #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00910000148254	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931
Gorilla	MODERN SPECIES	444															ENSGGOG00000042714	CD93 (ENSGGOG00000044219) #22
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00860000135650	ENSGT00940000163410.a.b.a #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00910000148254	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931
Human	MODERN SPECIES	12	SYNDIG1 (ENSG00000101463) #9	GGTLC1 (ENSG00000149435)	CST5 (ENSG00000170367) #10	CST2 (ENSG00000170369) #11	CST1 (ENSG00000170373) #11	CST4 (ENSG00000101441) #11	CST3 (ENSG00000101439) #12	CST9 (ENSG00000173335) #13	CST9L (ENSG00000101435)	CST8 (ENSG00000125815) #15	CST11 (ENSG00000125831) #17	CSTL1 (ENSG00000125823) #18	NAPB (ENSG00000125814) #19	GZF1 (ENSG00000125812) #20	NXT1 (ENSG00000132661) #21	CD93 (ENSG00000125810) #22	THBD (ENSG00000178726) #23	SSTR4 (ENSG00000132671)	FOXA2 (ENSG00000125798) #24	PAX1 (ENSG00000125813) #27	NKX2-2 (ENSG00000125820) #30	NKX2-4 (ENSG00000125816) #32	XRN2 (ENSG00000088930) #33	KIZ (ENSG00000088970) #34	RALGAPA2 (ENSG00000188559) #35	INSM1 (ENSG00000173404) #36	CFAP61 (ENSG00000089101) #37	CRNKL1 (ENSG00000101343)	NAA20 (ENSG00000173418)	RIN2 (ENSG00000132669)	SLC24A3 (ENSG00000185052)
Pan	ANCESTRAL SPECIES	15	ENSGT00860000135650	ENSGT00940000163410.a.b.a #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00910000148254	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046
Bonobo	MODERN SPECIES	11	ENSPPAG00000038530 #11	CST4 (ENSPPAG00000035722) #11	CST3 (ENSPPAG00000041092) #12	CST9 (ENSPPAG00000037364) #13	CST9L (ENSPPAG00000033681)	ENSPPAG00000035983	ENSPPAG00000039408 #14	CST8 (ENSPPAG00000037606) #15	ENSPPAG00000034245 #16	CST11 (ENSPPAG00000025372) #17	CSTL1 (ENSPPAG00000038564) #18	NAPB (ENSPPAG00000043876) #19	GZF1 (ENSPPAG00000028487) #20	NXT1 (ENSPPAG00000020479) #21	ENSPPAG00000024534	CD93 (ENSPPAG00000040099) #22	THBD (ENSPPAG00000018179) #23	SSTR4 (ENSPPAG00000036986)	ENSPPAG00000031368 #24	ENSPPAG00000024066	ENSPPAG00000043307	PAX1 (ENSPPAG00000035911) #27	NKX2-2 (ENSPPAG00000039042) #30	ENSPPAG00000037349	XRN2 (ENSPPAG00000033549) #33	KIZ (ENSPPAG00000031020) #34	RALGAPA2 (ENSPPAG00000039422) #35	ENSPPAG00000036172 #37	CRNKL1 (ENSPPAG00000027847)	NAA20 (ENSPPAG00000016439)	RIN2 (ENSPPAG00000037433)
Chimpanzee	MODERN SPECIES	11	ENSPTRG00000049771	CST1 (ENSPTRG00000013329) #11	CST3 (ENSPTRG00000046564) #12	CST9 (ENSPTRG00000013326) #13	CST9L (ENSPTRG00000013325)	ENSPTRG00000047084	ENSPTRG00000050976 #14	CST8 (ENSPTRG00000013324) #15	ENSPTRG00000045117 #16	CST11 (ENSPTRG00000013323) #17	CSTL1 (ENSPTRG00000045776) #18	NAPB (ENSPTRG00000013321) #19	GZF1 (ENSPTRG00000013320) #20	NXT1 (ENSPTRG00000013319) #21	ENSPTRG00000046209	CD93 (ENSPTRG00000013318) #22	THBD (ENSPTRG00000013317) #23	SSTR4 (ENSPTRG00000013316)	FOXA2 (ENSPTRG00000048023) #24	ENSPTRG00000045139	ENSPTRG00000044291	PAX1 (ENSPTRG00000013311) #27	NKX2-2 (ENSPTRG00000013310) #30	NKX2-4 (ENSPTRG00000013309) #32	ENSPTRG00000047508	XRN2 (ENSPTRG00000013308) #33	ENSPTRG00000044546	KIZ (ENSPTRG00000046348) #34	RALGAPA2 (ENSPTRG00000013306) #35	CFAP61 (ENSPTRG00000013301) #37	CRNKL1 (ENSPTRG00000030609)
Orangutan	MODERN SPECIES	11	CST4 (ENSPPYG00000011266) #11	ENSPPYG00000039032 #11	CST3 (ENSPPYG00000010776) #12	CST9 (ENSPPYG00000010775) #13	CST9L (ENSPPYG00000010773)	ENSPPYG00000010772	ENSPPYG00000010771 #14	CST8 (ENSPPYG00000010770) #15	ENSPPYG00000037632 #16	CST11 (ENSPPYG00000010769) #17	CSTL1 (ENSPPYG00000010768) #18	NAPB (ENSPPYG00000010767) #19	GZF1 (ENSPPYG00000010766) #20	NXT1 (ENSPPYG00000010765) #21	ENSPPYG00000010764	CD93 (ENSPPYG00000010763) #22	THBD (ENSPPYG00000010762) #23	SSTR4 (ENSPPYG00000010761)	FOXA2 (ENSPPYG00000040463) #24	PAX1 (ENSPPYG00000010758) #27	NKX2-2 (ENSPPYG00000010757) #30	NKX2-4 (ENSPPYG00000010756) #32	XRN2 (ENSPPYG00000010755) #33	KIZ (ENSPPYG00000010754) #34	RALGAPA2 (ENSPPYG00000010751) #35	INSM1 (ENSPPYG00000010750) #36	CFAP61 (ENSPPYG00000010748) #37	CRNKL1 (ENSPPYG00000010747)	NAA20 (ENSPPYG00000010746)	RIN2 (ENSPPYG00000010745)	SLC24A3 (ENSPPYG00000010743)
Gibbon	MODERN SPECIES	3	ACSS1 (ENSNLEG00000015554)	APMAP (ENSNLEG00000032557) #8	CST7 (ENSNLEG00000015525) #7	SYNDIG1 (ENSNLEG00000015521) #9	CST5 (ENSNLEG00000015517) #10	CST2 (ENSNLEG00000036132) #11	CST3 (ENSNLEG00000035405) #12	CST9 (ENSNLEG00000011616) #13	CST8 (ENSNLEG00000011607) #15	ENSNLEG00000033018 #16	CST11 (ENSNLEG00000011603) #17	CSTL1 (ENSNLEG00000011597) #18	NAPB (ENSNLEG00000027099) #19	GZF1 (ENSNLEG00000011565) #20	ENSNLEG00000033556	CD93 (ENSNLEG00000011559) #22	THBD (ENSNLEG00000011558) #23	SSTR4 (ENSNLEG00000018627)	ENSNLEG00000031709	ENSNLEG00000031487 #24	PAX1 (ENSNLEG00000010049) #27	NKX2-2 (ENSNLEG00000010048) #30	ENSNLEG00000010047 #32	XRN2 (ENSNLEG00000009991) #33	KIZ (ENSNLEG00000009954) #34	ENSNLEG00000033115	RALGAPA2 (ENSNLEG00000009931) #35	CFAP61 (ENSNLEG00000009893) #37	ENSNLEG00000009862	NAA20 (ENSNLEG00000028442)	RIN2 (ENSNLEG00000009844)
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000164098.a.a #13	ENSGT00940000164098.a.b #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00940000161877.h	ENSGT00940000164098.a.b #13	ENSGT00860000135650.a	ENSGT00940000154755.d #12	ENSGT00940000163410 #11	ENSGT00940000164098.a.a #13	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046
Macaca	ANCESTRAL SPECIES	16	ENSGT00940000154755.d #12	ENSGT00860000135650.a	ENSGT00940000163410 #11	ENSGT00940000164098.a.a #13	ENSGT00940000161877.g.b	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046
Pig-tailed macaque	MODERN SPECIES	130	CST5 (ENSMNEG00000039359) #10	CST9L (ENSMNEG00000032753)	ENSMNEG00000044989	CST3 (ENSMNEG00000032382) #12	ENSMNEG00000039431	ENSMNEG00000039062 #11	CST9 (ENSMNEG00000039807) #13	CST8 (ENSMNEG00000037697) #15	ENSMNEG00000032864 #16	CST11 (ENSMNEG00000041474) #17	CSTL1 (ENSMNEG00000044944) #18	NAPB (ENSMNEG00000036841) #19	GZF1 (ENSMNEG00000033117) #20	NXT1 (ENSMNEG00000027745) #21	ENSMNEG00000024687	CD93 (ENSMNEG00000042460) #22	SSTR4 (ENSMNEG00000038323)	FOXA2 (ENSMNEG00000011763) #24	ENSMNEG00000028347	PAX1 (ENSMNEG00000040896) #27	NKX2-2 (ENSMNEG00000045238) #30	NKX2-4 (ENSMNEG00000028280) #32	XRN2 (ENSMNEG00000040626) #33	KIZ (ENSMNEG00000028617) #34	ENSMNEG00000039122	RALGAPA2 (ENSMNEG00000033398) #35	INSM1 (ENSMNEG00000029140) #36	CFAP61 (ENSMNEG00000036910) #37	CRNKL1 (ENSMNEG00000037490)	NAA20 (ENSMNEG00000033202)	RIN2 (ENSMNEG00000005068)
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00940000163410.c #11	ENSGT00940000154755.d #12	ENSGT00860000135650.a	ENSGT00940000163410.d #11	ENSGT00940000164098.a.a #13	ENSGT00940000166721.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Rhesus	MODERN SPECIES	1	CST9L (ENSMMUG00000045312)	ENSMMUG00000063629 #11	ENSMMUG00000050726	CST3 (ENSMMUG00000050596) #12	ENSMMUG00000046980 #11	CST9 (ENSMMUG00000039259) #13	ENSMMUG00000063687	ENSMMUG00000059402 #14	CST8 (ENSMMUG00000016489) #15	ENSMMUG00000016490 #16	CST11 (ENSMMUG00000022393) #17	CSTL1 (ENSMMUG00000055975) #18	NAPB (ENSMMUG00000022388) #19	GZF1 (ENSMMUG00000022387) #20	NXT1 (ENSMMUG00000022386) #21	CD93 (ENSMMUG00000016813) #22	THBD (ENSMMUG00000016814) #23	SSTR4 (ENSMMUG00000016815)	FOXA2 (ENSMMUG00000010410) #24	PAX1 (ENSMMUG00000019409) #27	ENSMMUG00000056728 #30	NKX2-4 (ENSMMUG00000011409) #32	XRN2 (ENSMMUG00000011405) #33	KIZ (ENSMMUG00000002060) #34	RALGAPA2 (ENSMMUG00000018371) #35	INSM1 (ENSMMUG00000039294) #36	CFAP61 (ENSMMUG00000042668) #37	CRNKL1 (ENSMMUG00000007709)	NAA20 (ENSMMUG00000007708)	RIN2 (ENSMMUG00000010114)	ENSMMUG00000051129
Crab-eating macaque	MODERN SPECIES	1	ENSMFAG00000032358 #11	CST3 (ENSMFAG00000062094) #12	ENSMFAG00000001311 #11	ENSMFAG00000051852 #13	ENSMFAG00000055858	ENSMFAG00000061186 #14	CST8 (ENSMFAG00000033001) #15	ENSMFAG00000032810 #16	CST11 (ENSMFAG00000038093) #17	CSTL1 (ENSMFAG00000057818) #18	NAPB (ENSMFAG00000012865) #19	ENSMFAG00000058516	GZF1 (ENSMFAG00000042408) #20	NXT1 (ENSMFAG00000065310) #21	ENSMFAG00000026040	CD93 (ENSMFAG00000043644) #22	SSTR4 (ENSMFAG00000017458)	FOXA2 (ENSMFAG00000047214) #24	ENSMFAG00000057184	PAX1 (ENSMFAG00000044435) #27	NKX2-2 (ENSMFAG00000044462) #30	XRN2 (ENSMFAG00000038122) #33	KIZ (ENSMFAG00000036086) #34	RALGAPA2 (ENSMFAG00000039275) #35	CFAP61 (ENSMFAG00000040250) #37	CRNKL1 (ENSMFAG00000039893)	RIN2 (ENSMFAG00000002995)	ENSMFAG00000065169	SLC24A3 (ENSMFAG00000037051)	SCP2D1 (ENSMFAG00000050245)	ENSMFAG00000034375
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00940000166721	ENSGT00940000161877.h	ENSGT00940000164098.a.b #13	ENSGT00940000154755.d #12	ENSGT00860000135650.a	ENSGT00940000163410 #11	ENSGT00940000164098.a.a #13	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046
Olive baboon	MODERN SPECIES	7	SYNDIG1 (ENSPANG00000047245) #9	ENSPANG00000048046	APMAP (ENSPANG00000051418) #8	CST7 (ENSPANG00000042634) #7	ACSS1 (ENSPANG00000017910)	VSX1 (ENSPANG00000021775)	ENTPD6 (ENSPANG00000026175)	ENSPANG00000045994	PYGB (ENSPANG00000024585)	ABHD12 (ENSPANG00000001312)	GINS1 (ENSPANG00000032488)	NINL (ENSPANG00000016039)	ENSPANG00000044377 ##31	NANP (ENSPANG00000031862)	ENSPANG00000048820	CD93 (ENSPANG00000018432) #22	THBD (ENSPANG00000046781) #23	SSTR4 (ENSPANG00000004090)	ENSPANG00000044373	FOXA2 (ENSPANG00000011847) #24	PAX1 (ENSPANG00000008282) #27	ENSPANG00000043988 #30	NKX2-4 (ENSPANG00000014236) #32	XRN2 (ENSPANG00000018088) #33	KIZ (ENSPANG00000025535) #34	ENSPANG00000050604	RALGAPA2 (ENSPANG00000018089) #35	ENSPANG00000046512 ##31	CFAP61 (ENSPANG00000024586) #37	ENSPANG00000045223	CRNKL1 (ENSPANG00000017420)
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00940000166721	ENSGT00940000161877.h	ENSGT00940000164098.a.b #13	ENSGT00940000163410 #11	ENSGT00860000135650.a	ENSGT00940000154755.d #12	ENSGT00940000164098.a.a #13	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Sooty mangabey	MODERN SPECIES	602	CST9L (ENSCATG00000032932)	ENSCATG00000035179 #13	ENSCATG00000035785 #11	ENSCATG00000036042	CST3 (ENSCATG00000032215) #12	ENSCATG00000043016 #11	ENSCATG00000033110 #13	CST8 (ENSCATG00000033479) #15	ENSCATG00000043404 #16	CST11 (ENSCATG00000042927) #17	CSTL1 (ENSCATG00000031751) #18	NAPB (ENSCATG00000042262) #19	GZF1 (ENSCATG00000039279) #20	NXT1 (ENSCATG00000019026) #21	ENSCATG00000019258	CD93 (ENSCATG00000009216) #22	SSTR4 (ENSCATG00000019242)	FOXA2 (ENSCATG00000033454) #24	ENSCATG00000022190	PAX1 (ENSCATG00000029185) #27	NKX2-2 (ENSCATG00000041599) #30	NKX2-4 (ENSCATG00000023019) #32	XRN2 (ENSCATG00000040350) #33	KIZ (ENSCATG00000042535) #34	ENSCATG00000043761	RALGAPA2 (ENSCATG00000035357) #35	INSM1 (ENSCATG00000037816) #36	CFAP61 (ENSCATG00000043610) #37	CRNKL1 (ENSCATG00000034247)	NAA20 (ENSCATG00000027935)	RIN2 (ENSCATG00000042503)
Drill	MODERN SPECIES	1652															ENSMLEG00000027361	CD93 (ENSMLEG00000031294) #22	FOXA2 (ENSMLEG00000030410) #24
Vervet Monkey	MODERN SPECIES	11	IDH3B (ENSCSAG00000010969)	EBF4 (ENSCSAG00000010974)	CPXM1 (ENSCSAG00000010982)	SYNDIG1 (ENSCSAG00000010985) #9	CST5 (ENSCSAG00000010994) #10	ENSCSAG00000011001	ENSCSAG00000011012	CST9L (ENSCSAG00000011017)	ENSCSAG00000011022 #13	ENSCSAG00000011025 #11	CST3 (ENSCSAG00000011027) #12	ENSCSAG00000011032	ENSCSAG00000011037	GZF1 (ENSCSAG00000011054) #20	NXT1 (ENSCSAG00000018678) #21	CD93 (ENSCSAG00000011058) #22	THBD (ENSCSAG00000018677) #23	SSTR4 (ENSCSAG00000018676)	FOXA2 (ENSCSAG00000011062) #24	PAX1 (ENSCSAG00000011068) #27	NKX2-2 (ENSCSAG00000011072) #30	NKX2-4 (ENSCSAG00000011080) #32	XRN2 (ENSCSAG00000011094) #33	KIZ (ENSCSAG00000011135) #34	RALGAPA2 (ENSCSAG00000011248) #35	INSM1 (ENSCSAG00000018675) #36	CFAP61 (ENSCSAG00000011382) #37	CRNKL1 (ENSCSAG00000011434)	NAA20 (ENSCSAG00000011440)	RIN2 (ENSCSAG00000011446)	ENSCSAG00000011450
Rhinopithecus	ANCESTRAL SPECIES	176								ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000155999 #24	ENSGT00950000183087.A.b.b	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Golden snub-nosed monkey	MODERN SPECIES	1446									CST8 (ENSRROG00000030761) #15	ENSRROG00000037494 #16	CST11 (ENSRROG00000029851) #17	CSTL1 (ENSRROG00000032535) #18	NAPB (ENSRROG00000044287) #19	GZF1 (ENSRROG00000030533) #20	NXT1 (ENSRROG00000026657) #21	CD93 (ENSRROG00000012087) #22	FOXA2 (ENSRROG00000024272) #24	ENSRROG00000030464	ENSRROG00000040808	PAX1 (ENSRROG00000038854) #27	NKX2-2 (ENSRROG00000041150) #30	NKX2-4 (ENSRROG00000006364) #32	XRN2 (ENSRROG00000044400) #33	ENSRROG00000030791 #34	ENSRROG00000041676	RALGAPA2 (ENSRROG00000037467) #35	CFAP61 (ENSRROG00000040251) #37	CRNKL1 (ENSRROG00000040450)	NAA20 (ENSRROG00000036514)
Black snub-nosed monkey	MODERN SPECIES	2074								ENSRBIG00000033700 #14	CST8 (ENSRBIG00000044719) #15	ENSRBIG00000044901 #16	CST11 (ENSRBIG00000037634) #17	CSTL1 (ENSRBIG00000038994) #18	NAPB (ENSRBIG00000040673) #19	GZF1 (ENSRBIG00000028715) #20	NXT1 (ENSRBIG00000021433) #21	CD93 (ENSRBIG00000006468) #22	ENSRBIG00000025242	CDH8 (ENSRBIG00000030891)
Tarsier	MODERN SPECIES	4780										CST9 (ENSTSYG00000029266) #13	CST8 (ENSTSYG00000000658) #15	CST11 (ENSTSYG00000000187) #17	NAPB (ENSTSYG00000008750) #19	GZF1 (ENSTSYG00000028054) #20	NXT1 (ENSTSYG00000007592) #21	CD93 (ENSTSYG00000006459) #22	SSTR4 (ENSTSYG00000000585)
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000164098 #13	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Lemuriformes	ANCESTRAL SPECIES	44	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000164098 #13	ENSGT00940000162294 #15	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Mouse lemur	MODERN SPECIES	9	VSX1 (ENSMICG00000002047)	ACSS1 (ENSMICG00000002040)	APMAP (ENSMICG00000002038) #8	CST7 (ENSMICG00000002037) #7	SYNDIG1 (ENSMICG00000027578) #9	ENSMICG00000032368	ENSMICG00000043235 ##12	ENSMICG00000004617 ##12	CST9 (ENSMICG00000047052) #13	CST8 (ENSMICG00000017905) #15	CST11 (ENSMICG00000017904) #17	CSTL1 (ENSMICG00000017903) #18	NAPB (ENSMICG00000017902) #19	GZF1 (ENSMICG00000046070) #20	NXT1 (ENSMICG00000044853) #21	CD93 (ENSMICG00000017898) #22	FOXA2 (ENSMICG00000030588) #24	PAX1 (ENSMICG00000016968) #27	NKX2-2 (ENSMICG00000045009) #30	NKX2-4 (ENSMICG00000032695) #32	XRN2 (ENSMICG00000008126) #33	KIZ (ENSMICG00000008114) #34	RALGAPA2 (ENSMICG00000006077) #35	INSM1 (ENSMICG00000037992) #36	CFAP61 (ENSMICG00000006057) #37	CRNKL1 (ENSMICG00000006048)	ENSMICG00000006044	RIN2 (ENSMICG00000006035)	SLC24A3 (ENSMICG00000006014)	DTD1 (ENSMICG00000010771)	ENSMICG00000010750
Lemuriformes_a	ANCESTRAL SPECIES	137					ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000164098 #13	ENSGT00940000162294 #15	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Coquerels sifaka	MODERN SPECIES	560						ENSPCOG00000018222	ENSPCOG00000001285	CST3 (ENSPCOG00000027602) ##12	CST9L (ENSPCOG00000008034)	CST8 (ENSPCOG00000017881) #15	CST11 (ENSPCOG00000025724) #17	CSTL1 (ENSPCOG00000016553) #18	NAPB (ENSPCOG00000022495) #19	GZF1 (ENSPCOG00000024180) #20	NXT1 (ENSPCOG00000025624) #21	CD93 (ENSPCOG00000022300) #22	FOXA2 (ENSPCOG00000001633) #24	PAX1 (ENSPCOG00000027636) #27	NKX2-2 (ENSPCOG00000016151) #30
Greater bamboo lemur	MODERN SPECIES	878							ENSPSMG00000008949	ENSPSMG00000008941 #14	CST8 (ENSPSMG00000008931) #15	ENSPSMG00000008923 ##16	CST11 (ENSPSMG00000008919) #17	CSTL1 (ENSPSMG00000008917) #18	NAPB (ENSPSMG00000008819) #19	GZF1 (ENSPSMG00000008681) #20	NXT1 (ENSPSMG00000008668) #21	CD93 (ENSPSMG00000008660) #22	THBD (ENSPSMG00000008649) #23	SSTR4 (ENSPSMG00000008634)	FOXA2 (ENSPSMG00000008622) #24	PAX1 (ENSPSMG00000008610) #27	NKX2-2 (ENSPSMG00000008596) #30	NKX2-4 (ENSPSMG00000008590) #32	XRN2 (ENSPSMG00000008572) #33	KIZ (ENSPSMG00000008514) #34	ENSPSMG00000008491	RALGAPA2 (ENSPSMG00000008474) #35	INSM1 (ENSPSMG00000008427) #36
Bushbaby	MODERN SPECIES	251													NAPB (ENSOGAG00000012607) #19	GZF1 (ENSOGAG00000028389) #20	NXT1 (ENSOGAG00000000717) #21	CD93 (ENSOGAG00000017109) #22	THBD (ENSOGAG00000026061) #23	SSTR4 (ENSOGAG00000017105)	ENSOGAG00000025509	FOXA2 (ENSOGAG00000033297) #24	PAX1 (ENSOGAG00000033162) #27	NKX2-2 (ENSOGAG00000029474) #30	ENSOGAG00000025951	NKX2-4 (ENSOGAG00000024342) #32	XRN2 (ENSOGAG00000001068) #33	KIZ (ENSOGAG00000010591) #34	RALGAPA2 (ENSOGAG00000011557) #35	INSM1 (ENSOGAG00000034802) #36	ENSOGAG00000031837	CFAP61 (ENSOGAG00000011546) #37	CRNKL1 (ENSOGAG00000011544)
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Tree shrew	MODERN SPECIES	1130																CD93 (ENSTBEG00000014371) #22
Glires	ANCESTRAL SPECIES	17	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Lagomorpha	ANCESTRAL SPECIES	57							ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.B ##16	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b	ENSGT00390000006916.c	ENSGT00390000014861
Rabbit	MODERN SPECIES	15	ENSOCUG00000008071 ##12	ENSOCUG00000036359	ENSOCUG00000032386	ENSOCUG00000021033	ENSOCUG00000024585	ENSOCUG00000029526	ENSOCUG00000026263 #14	CST8 (ENSOCUG00000024979) #15	ENSOCUG00000027150 ##16	CSTL1 (ENSOCUG00000024430) #18	ENSOCUG00000025538	NAPB (ENSOCUG00000009263) #19	ENSOCUG00000025214 #20	NXT1 (ENSOCUG00000025924) #21	ENSOCUG00000024138	CD93 (ENSOCUG00000014812) #22	FOXA2 (ENSOCUG00000007368) #24	PAX1 (ENSOCUG00000003276) #27	NKX2-2 (ENSOCUG00000007166) #30	ENSOCUG00000024195	XRN2 (ENSOCUG00000013468) #33	KIZ (ENSOCUG00000013848) #34	RALGAPA2 (ENSOCUG00000017951) #35	CFAP61 (ENSOCUG00000015506) #37	CRNKL1 (ENSOCUG00000015484)	NAA20 (ENSOCUG00000015481)	RIN2 (ENSOCUG00000015450)	SLC24A3 (ENSOCUG00000009833)	ENSOCUG00000035674	SCP2D1 (ENSOCUG00000010991)	DTD1 (ENSOCUG00000010988)
Pika	MODERN SPECIES	6732															NXT1 (ENSOPRG00000006167) #21	CD93 (ENSOPRG00000006161) #22	FOXA2 (ENSOPRG00000006139) #24
Rodentia	ANCESTRAL SPECIES	18	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000164098 #13	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.b.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.b.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #9	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001019793	Cst10 (ENSCGRG00001015577) ##12	ENSCGRG00001017333 ##12	ENSCGRG00001020338	ENSCGRG00001014456	ENSCGRG00001017812	Cst13 (ENSCGRG00001024079) #14	Cst8 (ENSCGRG00001020750) #15	Cst12 (ENSCGRG00001024036) #16	Cstdc1 (ENSCGRG00001024407) ##16	Cst11 (ENSCGRG00001004859) #17	Cstl1 (ENSCGRG00001006313) #18	Napb (ENSCGRG00001015884) #19	Gzf1 (ENSCGRG00001003944) #20	ENSCGRG00001007062 #21	Cd93 (ENSCGRG00001016628) #22	Thbd (ENSCGRG00001010215) #23	Sstr4 (ENSCGRG00001010896)	Foxa2 (ENSCGRG00001000494) #24	Pax1 (ENSCGRG00001009223) #27	Nkx2-2 (ENSCGRG00001013924) #30	ENSCGRG00001016394	Nkx2-4 (ENSCGRG00001002742) #32	Xrn2 (ENSCGRG00001010676) #33	Kiz (ENSCGRG00001020800) #34	Ralgapa2 (ENSCGRG00001024249) #35	Insm1 (ENSCGRG00001011430) #36	Cfap61 (ENSCGRG00001022702) #37	Slc24a3 (ENSCGRG00001004364)	Scp2d1 (ENSCGRG00001008412)	Dtd1 (ENSCGRG00001008221)
Golden Hamster	MODERN SPECIES	650	Acss1 (ENSMAUG00000016079)	Apmap (ENSMAUG00000022255) #8	Cst7 (ENSMAUG00000006797) #7	1810024B03Rik (ENSMAUG00000019265)	Syndig1 (ENSMAUG00000012485) #9	ENSMAUG00000013001	Cst10 (ENSMAUG00000020427) ##12	Cst3 (ENSMAUG00000012476) ##12	Cstdc2 (ENSMAUG00000014409)	Cst9 (ENSMAUG00000012174)	Cst13 (ENSMAUG00000021851) #14	Cst12 (ENSMAUG00000010970) #16	Napb (ENSMAUG00000018004) #19	Gzf1 (ENSMAUG00000019656) #20	Nxt1 (ENSMAUG00000004141) #21	Cd93 (ENSMAUG00000019441) #22	Sstr4 (ENSMAUG00000008430)	Foxa2 (ENSMAUG00000016457) #24	Pax1 (ENSMAUG00000019674) #27	Nkx2-2 (ENSMAUG00000004347) #30	Nkx2-4 (ENSMAUG00000013928) #32	Xrn2 (ENSMAUG00000021842) #33	Kiz (ENSMAUG00000012933) #34	Ralgapa2 (ENSMAUG00000000917) #35	Insm1 (ENSMAUG00000008643) #36	Cfap61 (ENSMAUG00000021388) #37	ENSMAUG00000018263	ENSMAUG00000014865	Crnkl1 (ENSMAUG00000020764)	Naa20 (ENSMAUG00000016403)	Rin2 (ENSMAUG00000010319)
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00950000183147.B #9	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.b.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Northern American deer mouse	MODERN SPECIES	17	Syndig1 (ENSPEMG00000002878) #9	Cst10 (ENSPEMG00000018501) ##12	ENSPEMG00000025257	ENSPEMG00000028985 ##12	Cst3 (ENSPEMG00000019347) ##12	Cst9 (ENSPEMG00000020106)	Cst13 (ENSPEMG00000005338) #14	Cst8 (ENSPEMG00000030932) #15	Cst12 (ENSPEMG00000000557) #16	Cstdc1 (ENSPEMG00000018705) ##16	Cst11 (ENSPEMG00000000143) #17	Cstl1 (ENSPEMG00000015396) #18	Napb (ENSPEMG00000014658) #19	Gzf1 (ENSPEMG00000011285) #20	Nxt1 (ENSPEMG00000010397) #21	Cd93 (ENSPEMG00000009909) #22	Thbd (ENSPEMG00000013258) #23	Sstr4 (ENSPEMG00000013404)	Foxa2 (ENSPEMG00000018383) #24	ENSPEMG00000013352	Pax1 (ENSPEMG00000013032) #27	Nkx2-2 (ENSPEMG00000031205) #30	Xrn2 (ENSPEMG00000000111) #33	Kiz (ENSPEMG00000019926) #34	ENSPEMG00000018301	Ralgapa2 (ENSPEMG00000015207) #35	Insm1 (ENSPEMG00000011704) #36	Cfap61 (ENSPEMG00000019999) #37	Crnkl1 (ENSPEMG00000000073)	Naa20 (ENSPEMG00000019944)	Rin2 (ENSPEMG00000007218)
Prairie vole	MODERN SPECIES	86				Cst3 (ENSMOCG00000018857) ##12	Cstdc2 (ENSMOCG00000021896)	Cst13 (ENSMOCG00000012990) #14	Cst8 (ENSMOCG00000020831) #15	Cst12 (ENSMOCG00000013277) #16	Cstdc1 (ENSMOCG00000015424) ##16	Cst11 (ENSMOCG00000016678) #17	Cstl1 (ENSMOCG00000019330) #18	Napb (ENSMOCG00000000502) #19	Gzf1 (ENSMOCG00000017816) #20	Nxt1 (ENSMOCG00000018712) #21	ENSMOCG00000014565	Cd93 (ENSMOCG00000008988) #22	Thbd (ENSMOCG00000004558) #23	Sstr4 (ENSMOCG00000004743)	Foxa2 (ENSMOCG00000017025) #24	Pax1 (ENSMOCG00000000474) #27	Nkx2-2 (ENSMOCG00000016851) #30	Nkx2-4 (ENSMOCG00000012451) #32	Xrn2 (ENSMOCG00000012588) #33	Kiz (ENSMOCG00000022509) #34	ENSMOCG00000020632	Ralgapa2 (ENSMOCG00000015663) #35	Insm1 (ENSMOCG00000010418) #36	Cfap61 (ENSMOCG00000001829) #37	ENSMOCG00000000681	ENSMOCG00000021892	Rin2 (ENSMOCG00000011014)
Murinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #9	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Mus	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #9	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Mus_A	ANCESTRAL SPECIES		ENSGT00950000183147.B #9	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00970000195442	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931.m	ENSGT00550000075046	ENSGT00940000154866.B
Mus_B	ANCESTRAL SPECIES	1	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000172008	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00970000195442	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931.m	ENSGT00550000075046	ENSGT00940000154866.B
Mouse	MODERN SPECIES	11	Syndig1 (ENSMUSG00000074736) #9	Cst10 (ENSMUSG00000033156) ##12	Gm1330 (ENSMUSG00000063507)	Cst3 (ENSMUSG00000027447) ##12	Cstdc2 (ENSMUSG00000027446)	Cst9 (ENSMUSG00000027445)	Cst13 (ENSMUSG00000036924) #14	Cst8 (ENSMUSG00000027442) #15	Cst12 (ENSMUSG00000027443) #16	Cstdc1 (ENSMUSG00000027444) ##16	Cst11 (ENSMUSG00000036958) #17	Cstl1 (ENSMUSG00000055177) #18	Napb (ENSMUSG00000027438) #19	Gzf1 (ENSMUSG00000027439) #20	Nxt1 (ENSMUSG00000036992) #21	Cd93 (ENSMUSG00000027435) #22	Thbd (ENSMUSG00000074743) #23	Sstr4 (ENSMUSG00000037014)	Foxa2 (ENSMUSG00000037025) #24	Pax1 (ENSMUSG00000037034) #27	Nkx2-2 (ENSMUSG00000027434) #30	Nkx2-4 (ENSMUSG00000054160) #32	Xrn2 (ENSMUSG00000027433) #33	Kiz (ENSMUSG00000074749) #34	Ralgapa2 (ENSMUSG00000037110) #35	Insm1 (ENSMUSG00000068154) #36	Cfap61 (ENSMUSG00000037143) #37	Crnkl1 (ENSMUSG00000001767)	Naa20 (ENSMUSG00000002728)	Rin2 (ENSMUSG00000001768)	Slc24a3 (ENSMUSG00000063873)
Mus_C	ANCESTRAL SPECIES		ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000172008	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00970000195442	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931.m	ENSGT00550000075046	ENSGT00940000154866.B
spretus	MODERN SPECIES	11	Syndig1 (MGP_SPRETEiJ_G0025340) #9	Cst10 (MGP_SPRETEiJ_G0025339) ##12	MGP_SPRETEiJ_G0025338	Cst3 (MGP_SPRETEiJ_G0025337) ##12	Cstdc2 (MGP_SPRETEiJ_G0025336)	Cst9 (MGP_SPRETEiJ_G0025335)	Cst13 (MGP_SPRETEiJ_G0025334) #14	Cst8 (MGP_SPRETEiJ_G0025333) #15	Cst12 (MGP_SPRETEiJ_G0025332) #16	Cstdc1 (MGP_SPRETEiJ_G0025331) ##16	Cst11 (MGP_SPRETEiJ_G0025330) #17	Cstl1 (MGP_SPRETEiJ_G0025329) #18	Napb (MGP_SPRETEiJ_G0025328) #19	Gzf1 (MGP_SPRETEiJ_G0025327) #20	Nxt1 (MGP_SPRETEiJ_G0025326) #21	Cd93 (MGP_SPRETEiJ_G0025325) #22	Thbd (MGP_SPRETEiJ_G0025324) #23	Sstr4 (MGP_SPRETEiJ_G0025323)	Foxa2 (MGP_SPRETEiJ_G0025322) #24	Pax1 (MGP_SPRETEiJ_G0025321) #27	Nkx2-2 (MGP_SPRETEiJ_G0025320) #30	Nkx2-4 (MGP_SPRETEiJ_G0025319) #32	Xrn2 (MGP_SPRETEiJ_G0025318) #33	MGP_SPRETEiJ_G0025317	Kiz (MGP_SPRETEiJ_G0025316) #34	Ralgapa2 (MGP_SPRETEiJ_G0025315) #35	Insm1 (MGP_SPRETEiJ_G0025314) #36	Cfap61 (MGP_SPRETEiJ_G0025313) #37	Crnkl1 (MGP_SPRETEiJ_G0025312)	Naa20 (MGP_SPRETEiJ_G0025311)	Rin2 (MGP_SPRETEiJ_G0025310)
Steppe mouse	MODERN SPECIES	41			Cst3 (ENSMSIG00000003295) ##12	Cstdc2 (ENSMSIG00000003283)	Cst9 (ENSMSIG00000003261)	Cst13 (ENSMSIG00000003223) #14	Cst8 (ENSMSIG00000003194) #15	Cst12 (ENSMSIG00000003169) #16	Cstdc1 (ENSMSIG00000003153) ##16	Cst11 (ENSMSIG00000003137) #17	Cstl1 (ENSMSIG00000003118) #18	Napb (ENSMSIG00000003094) #19	Gzf1 (ENSMSIG00000003080) #20	Nxt1 (ENSMSIG00000003067) #21	ENSMSIG00000003019	Cd93 (ENSMSIG00000002996) #22	Thbd (ENSMSIG00000002989) #23	Sstr4 (ENSMSIG00000002973)	Foxa2 (ENSMSIG00000002945) #24
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0024422	Syndig1 (MGP_CAROLIEiJ_G0024421) #9	Cst10 (MGP_CAROLIEiJ_G0024420) ##12	Cst3 (MGP_CAROLIEiJ_G0024419) ##12	Cstdc2 (MGP_CAROLIEiJ_G0024418)	Cst9 (MGP_CAROLIEiJ_G0024417)	Cst13 (MGP_CAROLIEiJ_G0024416) #14	Cst8 (MGP_CAROLIEiJ_G0024415) #15	Cst12 (MGP_CAROLIEiJ_G0024414) #16	Cstdc1 (MGP_CAROLIEiJ_G0024413) ##16	Cst11 (MGP_CAROLIEiJ_G0024412) #17	Cstl1 (MGP_CAROLIEiJ_G0024411) #18	Napb (MGP_CAROLIEiJ_G0024410) #19	Gzf1 (MGP_CAROLIEiJ_G0024409) #20	Nxt1 (MGP_CAROLIEiJ_G0024408) #21	Cd93 (MGP_CAROLIEiJ_G0024407) #22	Thbd (MGP_CAROLIEiJ_G0024406) #23	Sstr4 (MGP_CAROLIEiJ_G0024405)	Foxa2 (MGP_CAROLIEiJ_G0024404) #24	Pax1 (MGP_CAROLIEiJ_G0024403) #27	Nkx2-2 (MGP_CAROLIEiJ_G0024402) #30	Nkx2-4 (MGP_CAROLIEiJ_G0024401) #32	Xrn2 (MGP_CAROLIEiJ_G0024400) #33	MGP_CAROLIEiJ_G0024399	Kiz (MGP_CAROLIEiJ_G0024398) #34	Ralgapa2 (MGP_CAROLIEiJ_G0024397) #35	Insm1 (MGP_CAROLIEiJ_G0024396) #36	Cfap61 (MGP_CAROLIEiJ_G0024395) #37	Crnkl1 (MGP_CAROLIEiJ_G0024394)	Naa20 (MGP_CAROLIEiJ_G0024393)	Rin2 (MGP_CAROLIEiJ_G0024392)
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025865	MGP_PahariEiJ_G0025864	Syndig1 (MGP_PahariEiJ_G0025863) #9	Cst10 (MGP_PahariEiJ_G0025862) ##12	Cst3 (MGP_PahariEiJ_G0025861) ##12	Cstdc2 (MGP_PahariEiJ_G0025860)	Cst13 (MGP_PahariEiJ_G0025859) #14	Cst8 (MGP_PahariEiJ_G0025858) #15	Cst12 (MGP_PahariEiJ_G0025857) #16	Cstdc1 (MGP_PahariEiJ_G0025856) ##16	Cst11 (MGP_PahariEiJ_G0025855) #17	Cstl1 (MGP_PahariEiJ_G0025854) #18	Napb (MGP_PahariEiJ_G0025853) #19	Gzf1 (MGP_PahariEiJ_G0025852) #20	Nxt1 (MGP_PahariEiJ_G0025851) #21	Cd93 (MGP_PahariEiJ_G0025850) #22	Thbd (MGP_PahariEiJ_G0025849) #23	Sstr4 (MGP_PahariEiJ_G0025848)	Foxa2 (MGP_PahariEiJ_G0025847) #24	Pax1 (MGP_PahariEiJ_G0025846) #27	Nkx2-2 (MGP_PahariEiJ_G0025845) #30	Nkx2-4 (MGP_PahariEiJ_G0025844) #32	Xrn2 (MGP_PahariEiJ_G0025843) #33	Kiz (MGP_PahariEiJ_G0025842) #34	Ralgapa2 (MGP_PahariEiJ_G0025841) #35	Insm1 (MGP_PahariEiJ_G0025840) #36	Cfap61 (MGP_PahariEiJ_G0025839) #37	Crnkl1 (MGP_PahariEiJ_G0025838)	Naa20 (MGP_PahariEiJ_G0025837)	Rin2 (MGP_PahariEiJ_G0025836)	MGP_PahariEiJ_G0025835
Rat	MODERN SPECIES	13	Fth1-ps5 (ENSRNOG00000033100)	Andpro (ENSRNOG00000031840) ##12	AABR07054186.1 (ENSRNOG00000032769)	Cst3 (ENSRNOG00000005195) ##12	Cstdc2 (ENSRNOG00000005178)	Cst9l (ENSRNOG00000005162)	Cst13 (ENSRNOG00000005103) #14	Cst8 (ENSRNOG00000004989) #15	Cst12 (ENSRNOG00000004946) #16	LOC257643 (ENSRNOG00000004858) ##16	Cst11 (ENSRNOG00000004808) #17	Cstl1 (ENSRNOG00000004779) #18	Napb (ENSRNOG00000004753) #19	Gzf1 (ENSRNOG00000004735) #20	Nxt1 (ENSRNOG00000004700) #21	Cd93 (ENSRNOG00000024799) #22	Thbd (ENSRNOG00000004687) #23	Sstr4 (ENSRNOG00000004641)	Foxa2 (ENSRNOG00000013133) #24	Pax1 (ENSRNOG00000024882) #27	Nkx2-2 (ENSRNOG00000012728) #30	Nkx2-4 (ENSRNOG00000012647) #32	Xrn2 (ENSRNOG00000011785) #33	Kiz (ENSRNOG00000025141) #34	ENSRNOG00000070752	Ralgapa2 (ENSRNOG00000036964) #35	Insm1 (ENSRNOG00000068937) #36	AABR07054096.1 (ENSRNOG00000011028) #37	Crnkl1 (ENSRNOG00000010587)	Naa20 (ENSRNOG00000010523)	Rin2 (ENSRNOG00000010131)
Upper Galilee mountains blind mole rat	MODERN SPECIES	353											Cst11 (ENSNGAG00000023054) #17	Cstl1 (ENSNGAG00000023212) #18	Napb (ENSNGAG00000023681) #19	Gzf1 (ENSNGAG00000024012) #20	Nxt1 (ENSNGAG00000000803) #21	Cd93 (ENSNGAG00000013591) #22	Sstr4 (ENSNGAG00000012473)
Lesser Egyptian jerboa	MODERN SPECIES	159						Cst3 (ENSJJAG00000013565) ##12	Cst9 (ENSJJAG00000013510)	Cst13 (ENSJJAG00000013369) #14	Cst8 (ENSJJAG00000013212) #15	Cst12 (ENSJJAG00000012500) #16	Cstdc1 (ENSJJAG00000012315) ##16	Cstl1 (ENSJJAG00000011653) #18	Napb (ENSJJAG00000010872) #19	Gzf1 (ENSJJAG00000008172) #20	ENSJJAG00000012022 #21	Cd93 (ENSJJAG00000007591) #22	Sstr4 (ENSJJAG00000023336)	Foxa2 (ENSJJAG00000023228) #24	Pax1 (ENSJJAG00000023177) #27	Nkx2-2 (ENSJJAG00000022426) #30	Nkx2-4 (ENSJJAG00000022335) #32	Xrn2 (ENSJJAG00000022128) #33	Kiz (ENSJJAG00000021546) #34	ENSJJAG00000020834	ENSJJAG00000020710 #35	ENSJJAG00000020467 #35	Insm1 (ENSJJAG00000020276) #36	Cfap61 (ENSJJAG00000018922) #37	Crnkl1 (ENSJJAG00000016926)	Naa20 (ENSJJAG00000016004)	ENSJJAG00000015745
Kangaroo rat	MODERN SPECIES	418	Pygb (ENSDORG00000007176)	Entpd6 (ENSDORG00000007175)	Vsx1 (ENSDORG00000005490)	Acss1 (ENSDORG00000004006)	Apmap (ENSDORG00000025391) #8	Cst7 (ENSDORG00000005298) #7	Syndig1 (ENSDORG00000003111) #9	ENSDORG00000008948 ##12	Cst3 (ENSDORG00000027673) ##12	Cst13 (ENSDORG00000027228) #14	Cst8 (ENSDORG00000011859) #15	Cst12 (ENSDORG00000023744) #16	Napb (ENSDORG00000011856) #19	Gzf1 (ENSDORG00000011855) #20	Nxt1 (ENSDORG00000024690) #21	Cd93 (ENSDORG00000028704) #22	Sstr4 (ENSDORG00000010486)	Foxa2 (ENSDORG00000027269) #24	Pax1 (ENSDORG00000016051) #27	Nkx2-2 (ENSDORG00000007972) #30	Nkx2-4 (ENSDORG00000023542) #32	Xrn2 (ENSDORG00000005434) #33	ENSDORG00000024554 #35	ENSDORG00000025962 #35	Insm1 (ENSDORG00000009864) #36	ENSDORG00000000395	ENSDORG00000029623 #37	ENSDORG00000024717 #37	ENSDORG00000000394	Naa20 (ENSDORG00000028339)	Rin2 (ENSDORG00000000392)
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.d	ENSGT00940000164098 #13	ENSGT00940000161877.c.b	ENSGT00940000161877.c.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000154755.c.b.e ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000164098 #13	ENSGT00940000161877.c.b	ENSGT00940000161877.d	ENSGT00940000161877.c.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000154755.c.b.f ##12	ENSGT00940000154755.c.b.e ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.b	ENSGT00940000161877.d	ENSGT00940000161877.c.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00390000007696.e.a.a.a	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046
Marmotini_b	ANCESTRAL SPECIES	140	ENSGT00940000154755.c.b.f ##12	ENSGT00940000154755.c.b.e ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.b	ENSGT00940000161877.d	ENSGT00940000161877.c.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00390000007696.e.a.a.a
Squirrel	MODERN SPECIES	220	ENSSTOG00000023496	ENSSTOG00000026963 ##12	ENSSTOG00000015564	ENSSTOG00000028869	ENSSTOG00000004129 #14	ENSSTOG00000020102	CST8 (ENSSTOG00000004122) #15	ENSSTOG00000024532 #16	ENSSTOG00000021841 ##16	CST11 (ENSSTOG00000004847) #17	CSTL1 (ENSSTOG00000024563) #18	NAPB (ENSSTOG00000022350) #19	ENSSTOG00000030626	GZF1 (ENSSTOG00000009820) #20	NXT1 (ENSSTOG00000026331) #21	CD93 (ENSSTOG00000024530) #22	SSTR4 (ENSSTOG00000021697)	FOXA2 (ENSSTOG00000020150) #24	PAX1 (ENSSTOG00000003000) #27	NKX2-2 (ENSSTOG00000021450) #30	XRN2 (ENSSTOG00000000589) #33	KIZ (ENSSTOG00000007449) #34
Arctic ground squirrel	MODERN SPECIES	114	ENSUPAG00010009918	ENSUPAG00010009902	ENSUPAG00010009895 #14	CST8 (ENSUPAG00010009884) #15	ENSUPAG00010009878 #16	ENSUPAG00010009872 ##16	CST11 (ENSUPAG00010009858) #17	CSTL1 (ENSUPAG00010009856) #18	ENSUPAG00010009855	ENSUPAG00010009850	NAPB (ENSUPAG00010009788) #19	GZF1 (ENSUPAG00010009780) #20	NXT1 (ENSUPAG00010009776) #21	ENSUPAG00010009772	ENSUPAG00010009759	CD93 (ENSUPAG00010009758) #22	THBD (ENSUPAG00010009753) #23	SSTR4 (ENSUPAG00010009751)	FOXA2 (ENSUPAG00010009738) #24	ENSUPAG00010009726	PAX1 (ENSUPAG00010009718) #27	NKX2-2 (ENSUPAG00010009710) #30	NKX2-4 (ENSUPAG00010009706) #32	XRN2 (ENSUPAG00010009667) #33	KIZ (ENSUPAG00010009237) #34	ENSUPAG00010009220
Alpin marmot	MODERN SPECIES		SYNDIG1 (ENSMMMG00000004598) #9	ENSMMMG00000004547 ##12	ENSMMMG00000004528 ##12	ENSMMMG00000004523	ENSMMMG00000004513 #14	CST8 (ENSMMMG00000004504) #15	ENSMMMG00000004491 #16	ENSMMMG00000004483 ##16	CST11 (ENSMMMG00000004467) #17	CSTL1 (ENSMMMG00000004456) #18	ENSMMMG00000004433	NAPB (ENSMMMG00000004419) #19	GZF1 (ENSMMMG00000004407) #20	NXT1 (ENSMMMG00000004405) #21	ENSMMMG00000004398	CD93 (ENSMMMG00000004395) #22	THBD (ENSMMMG00000004391) #23	SSTR4 (ENSMMMG00000004385)	FOXA2 (ENSMMMG00000004350) #24	PAX1 (ENSMMMG00000004326) #27	NKX2-2 (ENSMMMG00000004284) #30	XRN2 (ENSMMMG00000004161) #33	KIZ (ENSMMMG00000003881) #34	ENSMMMG00000003871	RALGAPA2 (ENSMMMG00000003453) #35	ENSMMMG00000003417	ENSMMMG00000003408 #37	ENSMMMG00000003290 #37	CRNKL1 (ENSMMMG00000003244)	NAA20 (ENSMMMG00000003240)	RIN2 (ENSMMMG00000003172)
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005012618	ENSSVLG00005012635 ##12	ENSSVLG00005012678 #13	ENSSVLG00005012749	ENSSVLG00005012823	ENSSVLG00005012871 #14	CST8 (ENSSVLG00005000126) #15	ENSSVLG00005000133 #16	ENSSVLG00005000139 ##16	CST11 (ENSSVLG00005000162) #17	CSTL1 (ENSSVLG00005000168) #18	NAPB (ENSSVLG00005000227) #19	GZF1 (ENSSVLG00005000288) #20	ENSSVLG00005000304 #21	ENSSVLG00005000317 #21	CD93 (ENSSVLG00005000330) #22	THBD (ENSSVLG00005000349) #23	SSTR4 (ENSSVLG00005000359)	ENSSVLG00005000368	FOXA2 (ENSSVLG00005000389) #24	ENSSVLG00005000403	PAX1 (ENSSVLG00005000421) #27	NKX2-2 (ENSSVLG00005000441) #30	NKX2-4 (ENSSVLG00005000455) #32	XRN2 (ENSSVLG00005000470) #33	KIZ (ENSSVLG00005000513) #34	ENSSVLG00005000546	RALGAPA2 (ENSSVLG00005000611) #35	INSM1 (ENSSVLG00005000689) #36	CFAP61 (ENSSVLG00005000731) #37	ENSSVLG00005000777
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.d	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987.n.a #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b.c ##12	ENSGT00940000154755.c.b.d ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.d	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987.n.a #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b.c ##12	ENSGT00940000154755.c.b.d ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987.n.a #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Long-tailed chinchilla	MODERN SPECIES	122	VSX1 (ENSCLAG00000015160)	ACSS1 (ENSCLAG00000012190)	APMAP (ENSCLAG00000013445) #8	CST7 (ENSCLAG00000015428) #7	SYNDIG1 (ENSCLAG00000012586) #9	ENSCLAG00000012454 ##12	ENSCLAG00000015899 ##12	ENSCLAG00000017066 #14	ENSCLAG00000015212 #15	ENSCLAG00000015474 #16	ENSCLAG00000011384 #17	CSTL1 (ENSCLAG00000012446) #18	NAPB (ENSCLAG00000011540) #19	GZF1 (ENSCLAG00000014714) #20	NXT1 (ENSCLAG00000012493) #21	CD93 (ENSCLAG00000012062) #22	THBD (ENSCLAG00000011994) #23	FOXA2 (ENSCLAG00000014548) #24	PAX1 (ENSCLAG00000016362) #27	NKX2-2 (ENSCLAG00000016430) #30	XRN2 (ENSCLAG00000013419) #33	KIZ (ENSCLAG00000012565) #34	RALGAPA2 (ENSCLAG00000012502) #35	CFAP61 (ENSCLAG00000014155) #37	CRNKL1 (ENSCLAG00000013859)	NAA20 (ENSCLAG00000014313)	RIN2 (ENSCLAG00000015234)	SLC24A3 (ENSCLAG00000015547)	DTD1 (ENSCLAG00000015302)	SEC23B (ENSCLAG00000014924)	RBBP9 (ENSCLAG00000014851)
Degu	MODERN SPECIES	114	VSX1 (ENSODEG00000010102)	ACSS1 (ENSODEG00000010733)	APMAP (ENSODEG00000010678) #8	CST7 (ENSODEG00000011264) #7	SYNDIG1 (ENSODEG00000012369) #9	ENSODEG00000019797	CST3 (ENSODEG00000012334) ##12	ENSODEG00000010611 #14	ENSODEG00000010448 #15	ENSODEG00000012595 #16	CST11 (ENSODEG00000013274) #17	CSTL1 (ENSODEG00000010719) #18	NAPB (ENSODEG00000011065) #19	GZF1 (ENSODEG00000013020) #20	NXT1 (ENSODEG00000019900) #21	CD93 (ENSODEG00000012518) #22	THBD (ENSODEG00000010709) #23	FOXA2 (ENSODEG00000011162) #24	PAX1 (ENSODEG00000012427) #27	ENSODEG00000019878	ENSODEG00000019885	NKX2-2 (ENSODEG00000012371) #30	ENSODEG00000012687	NKX2-4 (ENSODEG00000010842) #32	ENSODEG00000010745 #33	ENSODEG00000011188	KIZ (ENSODEG00000011491) #34	RALGAPA2 (ENSODEG00000011023) #35	INSM1 (ENSODEG00000020028) #36	ENSODEG00000011346	ENSODEG00000012124 #37
Guinea pig	MODERN SPECIES	8	APMAP (ENSCPOG00000008131) #8	CST7 (ENSCPOG00000008022) #7	SYNDIG1 (ENSCPOG00000004943) #9	ENSCPOG00000026799 ##12	ENSCPOG00000030984 ##12	ENSCPOG00000030716 ##12	ENSCPOG00000025294	ENSCPOG00000021926 #14	CST8 (ENSCPOG00000005550) #15	ENSCPOG00000025993 #16	ENSCPOG00000003822 #17	CSTL1 (ENSCPOG00000008734) #18	NAPB (ENSCPOG00000039063) #19	GZF1 (ENSCPOG00000010790) #20	NXT1 (ENSCPOG00000008817) #21	CD93 (ENSCPOG00000010252) #22	THBD (ENSCPOG00000030575) #23	FOXA2 (ENSCPOG00000033370) #24	PAX1 (ENSCPOG00000002886) #27	NKX2-2 (ENSCPOG00000000408) #30	XRN2 (ENSCPOG00000009407) #33	KIZ (ENSCPOG00000005683) #34	RALGAPA2 (ENSCPOG00000001602) #35	ENSCPOG00000038064	ENSCPOG00000039658 #37	ENSCPOG00000001594 #37	CRNKL1 (ENSCPOG00000004418)	NAA20 (ENSCPOG00000001593)	RIN2 (ENSCPOG00000013179)	SLC24A3 (ENSCPOG00000011970)	DTD1 (ENSCPOG00000002416)