Mammalia	ANCESTRAL SPECIES	22	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Theria	ANCESTRAL SPECIES	13	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000163249 #14	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Eutheria	ANCESTRAL SPECIES	11	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Primates	ANCESTRAL SPECIES	17	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Cebidae	ANCESTRAL SPECIES	13	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Marmoset	MODERN SPECIES	17	CST7 (ENSCJAG00000048473) #7	APMAP (ENSCJAG00000085161) #8	SYNDIG1 (ENSCJAG00000046278) #9	CST5 (ENSCJAG00000037422) #10	ENSCJAG00000000676 #11	CST3 (ENSCJAG00000036809) #12	CST9 (ENSCJAG00000084681) #13	ENSCJAG00000078884 #14	CST8 (ENSCJAG00000000697) #15	ENSCJAG00000074097 #16	CST11 (ENSCJAG00000080392) #17	CSTL1 (ENSCJAG00000041540) #18	NAPB (ENSCJAG00000000712) #19	GZF1 (ENSCJAG00000000733) #20	NXT1 (ENSCJAG00000044836) #21	CD93 (ENSCJAG00000005796) #22	THBD (ENSCJAG00000005795) #23	FOXA2 (ENSCJAG00000005785) #24	ENSCJAG00000070048 #25	ENSCJAG00000075555 #26	PAX1 (ENSCJAG00000005773) #27	ENSCJAG00000070559 #28	ENSCJAG00000076879 #29	ENSCJAG00000051781 #30	ENSCJAG00000081459 #31	NKX2-4 (ENSCJAG00000040336) #32	XRN2 (ENSCJAG00000005611) #33	KIZ (ENSCJAG00000005568) #34	RALGAPA2 (ENSCJAG00000005471) #35	INSM1 (ENSCJAG00000040556) #36	CFAP61 (ENSCJAG00000005444) #37
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000163410 #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Capuchin	MODERN SPECIES	134	APMAP (ENSCCAG00000023838) #8	CST7 (ENSCCAG00000027578) #7	SYNDIG1 (ENSCCAG00000028638) #9	CST5 (ENSCCAG00000034182) #10	ENSCCAG00000033223 #11	CST3 (ENSCCAG00000001843) #12	CST9 (ENSCCAG00000024829) #13	CST9L (ENSCCAG00000026509)	CST8 (ENSCCAG00000024862) #15	ENSCCAG00000037786 #16	CST11 (ENSCCAG00000035766) #17	CSTL1 (ENSCCAG00000033212) #18	NAPB (ENSCCAG00000029344) #19	GZF1 (ENSCCAG00000035601) #20	NXT1 (ENSCCAG00000015478) #21	CD93 (ENSCCAG00000034013) #22	THBD (ENSCCAG00000020711) #23	SSTR4 (ENSCCAG00000019059)	FOXA2 (ENSCCAG00000027576) #24	PAX1 (ENSCCAG00000025569) #27	NKX2-2 (ENSCCAG00000035862) #30	NKX2-4 (ENSCCAG00000032197) #32	ENSCCAG00000036857 #33	KIZ (ENSCCAG00000031682) #34	RALGAPA2 (ENSCCAG00000028362) #35	INSM1 (ENSCCAG00000023181) #36	CFAP61 (ENSCCAG00000026777) #37	CRNKL1 (ENSCCAG00000027037)	NAA20 (ENSCCAG00000028274)
Bolivian squirrel monkey	MODERN SPECIES	211	APMAP (ENSSBOG00000035251) #8	CST7 (ENSSBOG00000021587) #7	SYNDIG1 (ENSSBOG00000023812) #9	CST5 (ENSSBOG00000022942) #10	ENSSBOG00000028716 #11	CST3 (ENSSBOG00000030007) #12	CST9 (ENSSBOG00000020759) #13	CST9L (ENSSBOG00000020799)	CST8 (ENSSBOG00000021877) #15	ENSSBOG00000025115 #16	CST11 (ENSSBOG00000025613) #17	CSTL1 (ENSSBOG00000006474) #18	NAPB (ENSSBOG00000019980) #19	GZF1 (ENSSBOG00000018893) #20	NXT1 (ENSSBOG00000036378) #21	CD93 (ENSSBOG00000018965) #22	SSTR4 (ENSSBOG00000013012)	FOXA2 (ENSSBOG00000024799) #24
Mas night monkey	MODERN SPECIES	720																CD93 (ENSANAG00000031974) #22	SSTR4 (ENSANAG00000031033)	FOXA2 (ENSANAG00000000151) #24	PAX1 (ENSANAG00000031911) #27	NKX2-2 (ENSANAG00000031496) #30	NKX2-4 (ENSANAG00000025954) #32	XRN2 (ENSANAG00000020126) #33	KIZ (ENSANAG00000030324) #34	RALGAPA2 (ENSANAG00000035297) #35	ENSANAG00000025204	INSM1 (ENSANAG00000021754) #36	ENSANAG00000026688 #37	ENSANAG00000033104 #37	ENSANAG00000023984	CRNKL1 (ENSANAG00000024889)	ENSANAG00000021111
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00940000164560 #10	ENSGT00940000163410 #11	ENSGT00860000135650	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00940000163410.a.a #11	ENSGT00860000135650	ENSGT00940000163410.a.b.a #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hominidae	ANCESTRAL SPECIES	18	ENSGT00860000135650	ENSGT00940000163410.a.b.a #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00860000135650	ENSGT00940000163410.a.b.a #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00910000148254	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931
Gorilla	MODERN SPECIES	444															ENSGGOG00000042714	CD93 (ENSGGOG00000044219) #22
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00860000135650	ENSGT00940000163410.a.b.a #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00910000148254	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931
Human	MODERN SPECIES	12	SYNDIG1 (ENSG00000101463) #9	GGTLC1 (ENSG00000149435)	CST5 (ENSG00000170367) #10	CST2 (ENSG00000170369) #11	CST1 (ENSG00000170373) #11	CST4 (ENSG00000101441) #11	CST3 (ENSG00000101439) #12	CST9 (ENSG00000173335) #13	CST9L (ENSG00000101435)	CST8 (ENSG00000125815) #15	CST11 (ENSG00000125831) #17	CSTL1 (ENSG00000125823) #18	NAPB (ENSG00000125814) #19	GZF1 (ENSG00000125812) #20	NXT1 (ENSG00000132661) #21	CD93 (ENSG00000125810) #22	THBD (ENSG00000178726) #23	SSTR4 (ENSG00000132671)	FOXA2 (ENSG00000125798) #24	PAX1 (ENSG00000125813) #27	NKX2-2 (ENSG00000125820) #30	NKX2-4 (ENSG00000125816) #32	XRN2 (ENSG00000088930) #33	KIZ (ENSG00000088970) #34	RALGAPA2 (ENSG00000188559) #35	INSM1 (ENSG00000173404) #36	CFAP61 (ENSG00000089101) #37	CRNKL1 (ENSG00000101343)	NAA20 (ENSG00000173418)	RIN2 (ENSG00000132669)	SLC24A3 (ENSG00000185052)
Pan	ANCESTRAL SPECIES	15	ENSGT00860000135650	ENSGT00940000163410.a.b.a #11	ENSGT00940000154755.d #12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00910000148254	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046
Bonobo	MODERN SPECIES	11	ENSPPAG00000038530 #11	CST4 (ENSPPAG00000035722) #11	CST3 (ENSPPAG00000041092) #12	CST9 (ENSPPAG00000037364) #13	CST9L (ENSPPAG00000033681)	ENSPPAG00000035983	ENSPPAG00000039408 #14	CST8 (ENSPPAG00000037606) #15	ENSPPAG00000034245 #16	CST11 (ENSPPAG00000025372) #17	CSTL1 (ENSPPAG00000038564) #18	NAPB (ENSPPAG00000043876) #19	GZF1 (ENSPPAG00000028487) #20	NXT1 (ENSPPAG00000020479) #21	ENSPPAG00000024534	CD93 (ENSPPAG00000040099) #22	THBD (ENSPPAG00000018179) #23	SSTR4 (ENSPPAG00000036986)	ENSPPAG00000031368 #24	ENSPPAG00000024066	ENSPPAG00000043307	PAX1 (ENSPPAG00000035911) #27	NKX2-2 (ENSPPAG00000039042) #30	ENSPPAG00000037349	XRN2 (ENSPPAG00000033549) #33	KIZ (ENSPPAG00000031020) #34	RALGAPA2 (ENSPPAG00000039422) #35	ENSPPAG00000036172 #37	CRNKL1 (ENSPPAG00000027847)	NAA20 (ENSPPAG00000016439)	RIN2 (ENSPPAG00000037433)
Chimpanzee	MODERN SPECIES	11	ENSPTRG00000049771	CST1 (ENSPTRG00000013329) #11	CST3 (ENSPTRG00000046564) #12	CST9 (ENSPTRG00000013326) #13	CST9L (ENSPTRG00000013325)	ENSPTRG00000047084	ENSPTRG00000050976 #14	CST8 (ENSPTRG00000013324) #15	ENSPTRG00000045117 #16	CST11 (ENSPTRG00000013323) #17	CSTL1 (ENSPTRG00000045776) #18	NAPB (ENSPTRG00000013321) #19	GZF1 (ENSPTRG00000013320) #20	NXT1 (ENSPTRG00000013319) #21	ENSPTRG00000046209	CD93 (ENSPTRG00000013318) #22	THBD (ENSPTRG00000013317) #23	SSTR4 (ENSPTRG00000013316)	FOXA2 (ENSPTRG00000048023) #24	ENSPTRG00000045139	ENSPTRG00000044291	PAX1 (ENSPTRG00000013311) #27	NKX2-2 (ENSPTRG00000013310) #30	NKX2-4 (ENSPTRG00000013309) #32	ENSPTRG00000047508	XRN2 (ENSPTRG00000013308) #33	ENSPTRG00000044546	KIZ (ENSPTRG00000046348) #34	RALGAPA2 (ENSPTRG00000013306) #35	CFAP61 (ENSPTRG00000013301) #37	CRNKL1 (ENSPTRG00000030609)
Orangutan	MODERN SPECIES	11	CST4 (ENSPPYG00000011266) #11	ENSPPYG00000039032 #11	CST3 (ENSPPYG00000010776) #12	CST9 (ENSPPYG00000010775) #13	CST9L (ENSPPYG00000010773)	ENSPPYG00000010772	ENSPPYG00000010771 #14	CST8 (ENSPPYG00000010770) #15	ENSPPYG00000037632 #16	CST11 (ENSPPYG00000010769) #17	CSTL1 (ENSPPYG00000010768) #18	NAPB (ENSPPYG00000010767) #19	GZF1 (ENSPPYG00000010766) #20	NXT1 (ENSPPYG00000010765) #21	ENSPPYG00000010764	CD93 (ENSPPYG00000010763) #22	THBD (ENSPPYG00000010762) #23	SSTR4 (ENSPPYG00000010761)	FOXA2 (ENSPPYG00000040463) #24	PAX1 (ENSPPYG00000010758) #27	NKX2-2 (ENSPPYG00000010757) #30	NKX2-4 (ENSPPYG00000010756) #32	XRN2 (ENSPPYG00000010755) #33	KIZ (ENSPPYG00000010754) #34	RALGAPA2 (ENSPPYG00000010751) #35	INSM1 (ENSPPYG00000010750) #36	CFAP61 (ENSPPYG00000010748) #37	CRNKL1 (ENSPPYG00000010747)	NAA20 (ENSPPYG00000010746)	RIN2 (ENSPPYG00000010745)	SLC24A3 (ENSPPYG00000010743)
Gibbon	MODERN SPECIES	3	ACSS1 (ENSNLEG00000015554)	APMAP (ENSNLEG00000032557) #8	CST7 (ENSNLEG00000015525) #7	SYNDIG1 (ENSNLEG00000015521) #9	CST5 (ENSNLEG00000015517) #10	CST2 (ENSNLEG00000036132) #11	CST3 (ENSNLEG00000035405) #12	CST9 (ENSNLEG00000011616) #13	CST8 (ENSNLEG00000011607) #15	ENSNLEG00000033018 #16	CST11 (ENSNLEG00000011603) #17	CSTL1 (ENSNLEG00000011597) #18	NAPB (ENSNLEG00000027099) #19	GZF1 (ENSNLEG00000011565) #20	ENSNLEG00000033556	CD93 (ENSNLEG00000011559) #22	THBD (ENSNLEG00000011558) #23	SSTR4 (ENSNLEG00000018627)	ENSNLEG00000031709	ENSNLEG00000031487 #24	PAX1 (ENSNLEG00000010049) #27	NKX2-2 (ENSNLEG00000010048) #30	ENSNLEG00000010047 #32	XRN2 (ENSNLEG00000009991) #33	KIZ (ENSNLEG00000009954) #34	ENSNLEG00000033115	RALGAPA2 (ENSNLEG00000009931) #35	CFAP61 (ENSNLEG00000009893) #37	ENSNLEG00000009862	NAA20 (ENSNLEG00000028442)	RIN2 (ENSNLEG00000009844)
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000164560 #10	ENSGT00940000164098.a.a #13	ENSGT00940000164098.a.b #13	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00940000161877.h	ENSGT00940000164098.a.b #13	ENSGT00860000135650.a	ENSGT00940000154755.d #12	ENSGT00940000163410 #11	ENSGT00940000164098.a.a #13	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046
Macaca	ANCESTRAL SPECIES	16	ENSGT00940000154755.d #12	ENSGT00860000135650.a	ENSGT00940000163410 #11	ENSGT00940000164098.a.a #13	ENSGT00940000161877.g.b	ENSGT00940000166721	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046
Pig-tailed macaque	MODERN SPECIES	130	CST5 (ENSMNEG00000039359) #10	CST9L (ENSMNEG00000032753)	ENSMNEG00000044989	CST3 (ENSMNEG00000032382) #12	ENSMNEG00000039431	ENSMNEG00000039062 #11	CST9 (ENSMNEG00000039807) #13	CST8 (ENSMNEG00000037697) #15	ENSMNEG00000032864 #16	CST11 (ENSMNEG00000041474) #17	CSTL1 (ENSMNEG00000044944) #18	NAPB (ENSMNEG00000036841) #19	GZF1 (ENSMNEG00000033117) #20	NXT1 (ENSMNEG00000027745) #21	ENSMNEG00000024687	CD93 (ENSMNEG00000042460) #22	SSTR4 (ENSMNEG00000038323)	FOXA2 (ENSMNEG00000011763) #24	ENSMNEG00000028347	PAX1 (ENSMNEG00000040896) #27	NKX2-2 (ENSMNEG00000045238) #30	NKX2-4 (ENSMNEG00000028280) #32	XRN2 (ENSMNEG00000040626) #33	KIZ (ENSMNEG00000028617) #34	ENSMNEG00000039122	RALGAPA2 (ENSMNEG00000033398) #35	INSM1 (ENSMNEG00000029140) #36	CFAP61 (ENSMNEG00000036910) #37	CRNKL1 (ENSMNEG00000037490)	NAA20 (ENSMNEG00000033202)	RIN2 (ENSMNEG00000005068)
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00940000163410.c #11	ENSGT00940000154755.d #12	ENSGT00860000135650.a	ENSGT00940000163410.d #11	ENSGT00940000164098.a.a #13	ENSGT00940000166721.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Rhesus	MODERN SPECIES	1	CST9L (ENSMMUG00000045312)	ENSMMUG00000063629 #11	ENSMMUG00000050726	CST3 (ENSMMUG00000050596) #12	ENSMMUG00000046980 #11	CST9 (ENSMMUG00000039259) #13	ENSMMUG00000063687	ENSMMUG00000059402 #14	CST8 (ENSMMUG00000016489) #15	ENSMMUG00000016490 #16	CST11 (ENSMMUG00000022393) #17	CSTL1 (ENSMMUG00000055975) #18	NAPB (ENSMMUG00000022388) #19	GZF1 (ENSMMUG00000022387) #20	NXT1 (ENSMMUG00000022386) #21	CD93 (ENSMMUG00000016813) #22	THBD (ENSMMUG00000016814) #23	SSTR4 (ENSMMUG00000016815)	FOXA2 (ENSMMUG00000010410) #24	PAX1 (ENSMMUG00000019409) #27	ENSMMUG00000056728 #30	NKX2-4 (ENSMMUG00000011409) #32	XRN2 (ENSMMUG00000011405) #33	KIZ (ENSMMUG00000002060) #34	RALGAPA2 (ENSMMUG00000018371) #35	INSM1 (ENSMMUG00000039294) #36	CFAP61 (ENSMMUG00000042668) #37	CRNKL1 (ENSMMUG00000007709)	NAA20 (ENSMMUG00000007708)	RIN2 (ENSMMUG00000010114)	ENSMMUG00000051129
Crab-eating macaque	MODERN SPECIES	1	ENSMFAG00000032358 #11	CST3 (ENSMFAG00000062094) #12	ENSMFAG00000001311 #11	ENSMFAG00000051852 #13	ENSMFAG00000055858	ENSMFAG00000061186 #14	CST8 (ENSMFAG00000033001) #15	ENSMFAG00000032810 #16	CST11 (ENSMFAG00000038093) #17	CSTL1 (ENSMFAG00000057818) #18	NAPB (ENSMFAG00000012865) #19	ENSMFAG00000058516	GZF1 (ENSMFAG00000042408) #20	NXT1 (ENSMFAG00000065310) #21	ENSMFAG00000026040	CD93 (ENSMFAG00000043644) #22	SSTR4 (ENSMFAG00000017458)	FOXA2 (ENSMFAG00000047214) #24	ENSMFAG00000057184	PAX1 (ENSMFAG00000044435) #27	NKX2-2 (ENSMFAG00000044462) #30	XRN2 (ENSMFAG00000038122) #33	KIZ (ENSMFAG00000036086) #34	RALGAPA2 (ENSMFAG00000039275) #35	CFAP61 (ENSMFAG00000040250) #37	CRNKL1 (ENSMFAG00000039893)	RIN2 (ENSMFAG00000002995)	ENSMFAG00000065169	SLC24A3 (ENSMFAG00000037051)	SCP2D1 (ENSMFAG00000050245)	ENSMFAG00000034375
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00940000166721	ENSGT00940000161877.h	ENSGT00940000164098.a.b #13	ENSGT00940000154755.d #12	ENSGT00860000135650.a	ENSGT00940000163410 #11	ENSGT00940000164098.a.a #13	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046
Olive baboon	MODERN SPECIES	7	SYNDIG1 (ENSPANG00000047245) #9	ENSPANG00000048046	APMAP (ENSPANG00000051418) #8	CST7 (ENSPANG00000042634) #7	ACSS1 (ENSPANG00000017910)	VSX1 (ENSPANG00000021775)	ENTPD6 (ENSPANG00000026175)	ENSPANG00000045994	PYGB (ENSPANG00000024585)	ABHD12 (ENSPANG00000001312)	GINS1 (ENSPANG00000032488)	NINL (ENSPANG00000016039)	ENSPANG00000044377 ##31	NANP (ENSPANG00000031862)	ENSPANG00000048820	CD93 (ENSPANG00000018432) #22	THBD (ENSPANG00000046781) #23	SSTR4 (ENSPANG00000004090)	ENSPANG00000044373	FOXA2 (ENSPANG00000011847) #24	PAX1 (ENSPANG00000008282) #27	ENSPANG00000043988 #30	NKX2-4 (ENSPANG00000014236) #32	XRN2 (ENSPANG00000018088) #33	KIZ (ENSPANG00000025535) #34	ENSPANG00000050604	RALGAPA2 (ENSPANG00000018089) #35	ENSPANG00000046512 ##31	CFAP61 (ENSPANG00000024586) #37	ENSPANG00000045223	CRNKL1 (ENSPANG00000017420)
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00940000166721	ENSGT00940000161877.h	ENSGT00940000164098.a.b #13	ENSGT00940000163410 #11	ENSGT00860000135650.a	ENSGT00940000154755.d #12	ENSGT00940000164098.a.a #13	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Sooty mangabey	MODERN SPECIES	602	CST9L (ENSCATG00000032932)	ENSCATG00000035179 #13	ENSCATG00000035785 #11	ENSCATG00000036042	CST3 (ENSCATG00000032215) #12	ENSCATG00000043016 #11	ENSCATG00000033110 #13	CST8 (ENSCATG00000033479) #15	ENSCATG00000043404 #16	CST11 (ENSCATG00000042927) #17	CSTL1 (ENSCATG00000031751) #18	NAPB (ENSCATG00000042262) #19	GZF1 (ENSCATG00000039279) #20	NXT1 (ENSCATG00000019026) #21	ENSCATG00000019258	CD93 (ENSCATG00000009216) #22	SSTR4 (ENSCATG00000019242)	FOXA2 (ENSCATG00000033454) #24	ENSCATG00000022190	PAX1 (ENSCATG00000029185) #27	NKX2-2 (ENSCATG00000041599) #30	NKX2-4 (ENSCATG00000023019) #32	XRN2 (ENSCATG00000040350) #33	KIZ (ENSCATG00000042535) #34	ENSCATG00000043761	RALGAPA2 (ENSCATG00000035357) #35	INSM1 (ENSCATG00000037816) #36	CFAP61 (ENSCATG00000043610) #37	CRNKL1 (ENSCATG00000034247)	NAA20 (ENSCATG00000027935)	RIN2 (ENSCATG00000042503)
Drill	MODERN SPECIES	1652															ENSMLEG00000027361	CD93 (ENSMLEG00000031294) #22	FOXA2 (ENSMLEG00000030410) #24
Vervet Monkey	MODERN SPECIES	11	IDH3B (ENSCSAG00000010969)	EBF4 (ENSCSAG00000010974)	CPXM1 (ENSCSAG00000010982)	SYNDIG1 (ENSCSAG00000010985) #9	CST5 (ENSCSAG00000010994) #10	ENSCSAG00000011001	ENSCSAG00000011012	CST9L (ENSCSAG00000011017)	ENSCSAG00000011022 #13	ENSCSAG00000011025 #11	CST3 (ENSCSAG00000011027) #12	ENSCSAG00000011032	ENSCSAG00000011037	GZF1 (ENSCSAG00000011054) #20	NXT1 (ENSCSAG00000018678) #21	CD93 (ENSCSAG00000011058) #22	THBD (ENSCSAG00000018677) #23	SSTR4 (ENSCSAG00000018676)	FOXA2 (ENSCSAG00000011062) #24	PAX1 (ENSCSAG00000011068) #27	NKX2-2 (ENSCSAG00000011072) #30	NKX2-4 (ENSCSAG00000011080) #32	XRN2 (ENSCSAG00000011094) #33	KIZ (ENSCSAG00000011135) #34	RALGAPA2 (ENSCSAG00000011248) #35	INSM1 (ENSCSAG00000018675) #36	CFAP61 (ENSCSAG00000011382) #37	CRNKL1 (ENSCSAG00000011434)	NAA20 (ENSCSAG00000011440)	RIN2 (ENSCSAG00000011446)	ENSCSAG00000011450
Rhinopithecus	ANCESTRAL SPECIES	176								ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000155999 #24	ENSGT00950000183087.A.b.b	ENSGT00910000146941	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #35	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Golden snub-nosed monkey	MODERN SPECIES	1446									CST8 (ENSRROG00000030761) #15	ENSRROG00000037494 #16	CST11 (ENSRROG00000029851) #17	CSTL1 (ENSRROG00000032535) #18	NAPB (ENSRROG00000044287) #19	GZF1 (ENSRROG00000030533) #20	NXT1 (ENSRROG00000026657) #21	CD93 (ENSRROG00000012087) #22	FOXA2 (ENSRROG00000024272) #24	ENSRROG00000030464	ENSRROG00000040808	PAX1 (ENSRROG00000038854) #27	NKX2-2 (ENSRROG00000041150) #30	NKX2-4 (ENSRROG00000006364) #32	XRN2 (ENSRROG00000044400) #33	ENSRROG00000030791 #34	ENSRROG00000041676	RALGAPA2 (ENSRROG00000037467) #35	CFAP61 (ENSRROG00000040251) #37	CRNKL1 (ENSRROG00000040450)	NAA20 (ENSRROG00000036514)
Black snub-nosed monkey	MODERN SPECIES	2074								ENSRBIG00000033700 #14	CST8 (ENSRBIG00000044719) #15	ENSRBIG00000044901 #16	CST11 (ENSRBIG00000037634) #17	CSTL1 (ENSRBIG00000038994) #18	NAPB (ENSRBIG00000040673) #19	GZF1 (ENSRBIG00000028715) #20	NXT1 (ENSRBIG00000021433) #21	CD93 (ENSRBIG00000006468) #22	ENSRBIG00000025242	CDH8 (ENSRBIG00000030891)
Tarsier	MODERN SPECIES	4780										CST9 (ENSTSYG00000029266) #13	CST8 (ENSTSYG00000000658) #15	CST11 (ENSTSYG00000000187) #17	NAPB (ENSTSYG00000008750) #19	GZF1 (ENSTSYG00000028054) #20	NXT1 (ENSTSYG00000007592) #21	CD93 (ENSTSYG00000006459) #22	SSTR4 (ENSTSYG00000000585)
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000164098 #13	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Lemuriformes	ANCESTRAL SPECIES	44	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000164098 #13	ENSGT00940000162294 #15	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Mouse lemur	MODERN SPECIES	9	VSX1 (ENSMICG00000002047)	ACSS1 (ENSMICG00000002040)	APMAP (ENSMICG00000002038) #8	CST7 (ENSMICG00000002037) #7	SYNDIG1 (ENSMICG00000027578) #9	ENSMICG00000032368	ENSMICG00000043235 ##12	ENSMICG00000004617 ##12	CST9 (ENSMICG00000047052) #13	CST8 (ENSMICG00000017905) #15	CST11 (ENSMICG00000017904) #17	CSTL1 (ENSMICG00000017903) #18	NAPB (ENSMICG00000017902) #19	GZF1 (ENSMICG00000046070) #20	NXT1 (ENSMICG00000044853) #21	CD93 (ENSMICG00000017898) #22	FOXA2 (ENSMICG00000030588) #24	PAX1 (ENSMICG00000016968) #27	NKX2-2 (ENSMICG00000045009) #30	NKX2-4 (ENSMICG00000032695) #32	XRN2 (ENSMICG00000008126) #33	KIZ (ENSMICG00000008114) #34	RALGAPA2 (ENSMICG00000006077) #35	INSM1 (ENSMICG00000037992) #36	CFAP61 (ENSMICG00000006057) #37	CRNKL1 (ENSMICG00000006048)	ENSMICG00000006044	RIN2 (ENSMICG00000006035)	SLC24A3 (ENSMICG00000006014)	DTD1 (ENSMICG00000010771)	ENSMICG00000010750
Lemuriformes_a	ANCESTRAL SPECIES	137					ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000164098 #13	ENSGT00940000162294 #15	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Coquerels sifaka	MODERN SPECIES	560						ENSPCOG00000018222	ENSPCOG00000001285	CST3 (ENSPCOG00000027602) ##12	CST9L (ENSPCOG00000008034)	CST8 (ENSPCOG00000017881) #15	CST11 (ENSPCOG00000025724) #17	CSTL1 (ENSPCOG00000016553) #18	NAPB (ENSPCOG00000022495) #19	GZF1 (ENSPCOG00000024180) #20	NXT1 (ENSPCOG00000025624) #21	CD93 (ENSPCOG00000022300) #22	FOXA2 (ENSPCOG00000001633) #24	PAX1 (ENSPCOG00000027636) #27	NKX2-2 (ENSPCOG00000016151) #30
Greater bamboo lemur	MODERN SPECIES	878							ENSPSMG00000008949	ENSPSMG00000008941 #14	CST8 (ENSPSMG00000008931) #15	ENSPSMG00000008923 ##16	CST11 (ENSPSMG00000008919) #17	CSTL1 (ENSPSMG00000008917) #18	NAPB (ENSPSMG00000008819) #19	GZF1 (ENSPSMG00000008681) #20	NXT1 (ENSPSMG00000008668) #21	CD93 (ENSPSMG00000008660) #22	THBD (ENSPSMG00000008649) #23	SSTR4 (ENSPSMG00000008634)	FOXA2 (ENSPSMG00000008622) #24	PAX1 (ENSPSMG00000008610) #27	NKX2-2 (ENSPSMG00000008596) #30	NKX2-4 (ENSPSMG00000008590) #32	XRN2 (ENSPSMG00000008572) #33	KIZ (ENSPSMG00000008514) #34	ENSPSMG00000008491	RALGAPA2 (ENSPSMG00000008474) #35	INSM1 (ENSPSMG00000008427) #36
Bushbaby	MODERN SPECIES	251													NAPB (ENSOGAG00000012607) #19	GZF1 (ENSOGAG00000028389) #20	NXT1 (ENSOGAG00000000717) #21	CD93 (ENSOGAG00000017109) #22	THBD (ENSOGAG00000026061) #23	SSTR4 (ENSOGAG00000017105)	ENSOGAG00000025509	FOXA2 (ENSOGAG00000033297) #24	PAX1 (ENSOGAG00000033162) #27	NKX2-2 (ENSOGAG00000029474) #30	ENSOGAG00000025951	NKX2-4 (ENSOGAG00000024342) #32	XRN2 (ENSOGAG00000001068) #33	KIZ (ENSOGAG00000010591) #34	RALGAPA2 (ENSOGAG00000011557) #35	INSM1 (ENSOGAG00000034802) #36	ENSOGAG00000031837	CFAP61 (ENSOGAG00000011546) #37	CRNKL1 (ENSOGAG00000011544)
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Tree shrew	MODERN SPECIES	1130																CD93 (ENSTBEG00000014371) #22
Glires	ANCESTRAL SPECIES	17	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000164098 #13	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Lagomorpha	ANCESTRAL SPECIES	57							ENSGT00940000154755.c.a ##12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.B ##16	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b	ENSGT00390000006916.c	ENSGT00390000014861
Rabbit	MODERN SPECIES	15	ENSOCUG00000008071 ##12	ENSOCUG00000036359	ENSOCUG00000032386	ENSOCUG00000021033	ENSOCUG00000024585	ENSOCUG00000029526	ENSOCUG00000026263 #14	CST8 (ENSOCUG00000024979) #15	ENSOCUG00000027150 ##16	CSTL1 (ENSOCUG00000024430) #18	ENSOCUG00000025538	NAPB (ENSOCUG00000009263) #19	ENSOCUG00000025214 #20	NXT1 (ENSOCUG00000025924) #21	ENSOCUG00000024138	CD93 (ENSOCUG00000014812) #22	FOXA2 (ENSOCUG00000007368) #24	PAX1 (ENSOCUG00000003276) #27	NKX2-2 (ENSOCUG00000007166) #30	ENSOCUG00000024195	XRN2 (ENSOCUG00000013468) #33	KIZ (ENSOCUG00000013848) #34	RALGAPA2 (ENSOCUG00000017951) #35	CFAP61 (ENSOCUG00000015506) #37	CRNKL1 (ENSOCUG00000015484)	NAA20 (ENSOCUG00000015481)	RIN2 (ENSOCUG00000015450)	SLC24A3 (ENSOCUG00000009833)	ENSOCUG00000035674	SCP2D1 (ENSOCUG00000010991)	DTD1 (ENSOCUG00000010988)
Pika	MODERN SPECIES	6732															NXT1 (ENSOPRG00000006167) #21	CD93 (ENSOPRG00000006161) #22	FOXA2 (ENSOPRG00000006139) #24
Rodentia	ANCESTRAL SPECIES	18	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000164098 #13	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.b.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.b.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #9	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001019793	Cst10 (ENSCGRG00001015577) ##12	ENSCGRG00001017333 ##12	ENSCGRG00001020338	ENSCGRG00001014456	ENSCGRG00001017812	Cst13 (ENSCGRG00001024079) #14	Cst8 (ENSCGRG00001020750) #15	Cst12 (ENSCGRG00001024036) #16	Cstdc1 (ENSCGRG00001024407) ##16	Cst11 (ENSCGRG00001004859) #17	Cstl1 (ENSCGRG00001006313) #18	Napb (ENSCGRG00001015884) #19	Gzf1 (ENSCGRG00001003944) #20	ENSCGRG00001007062 #21	Cd93 (ENSCGRG00001016628) #22	Thbd (ENSCGRG00001010215) #23	Sstr4 (ENSCGRG00001010896)	Foxa2 (ENSCGRG00001000494) #24	Pax1 (ENSCGRG00001009223) #27	Nkx2-2 (ENSCGRG00001013924) #30	ENSCGRG00001016394	Nkx2-4 (ENSCGRG00001002742) #32	Xrn2 (ENSCGRG00001010676) #33	Kiz (ENSCGRG00001020800) #34	Ralgapa2 (ENSCGRG00001024249) #35	Insm1 (ENSCGRG00001011430) #36	Cfap61 (ENSCGRG00001022702) #37	Slc24a3 (ENSCGRG00001004364)	Scp2d1 (ENSCGRG00001008412)	Dtd1 (ENSCGRG00001008221)
Golden Hamster	MODERN SPECIES	650	Acss1 (ENSMAUG00000016079)	Apmap (ENSMAUG00000022255) #8	Cst7 (ENSMAUG00000006797) #7	1810024B03Rik (ENSMAUG00000019265)	Syndig1 (ENSMAUG00000012485) #9	ENSMAUG00000013001	Cst10 (ENSMAUG00000020427) ##12	Cst3 (ENSMAUG00000012476) ##12	Cstdc2 (ENSMAUG00000014409)	Cst9 (ENSMAUG00000012174)	Cst13 (ENSMAUG00000021851) #14	Cst12 (ENSMAUG00000010970) #16	Napb (ENSMAUG00000018004) #19	Gzf1 (ENSMAUG00000019656) #20	Nxt1 (ENSMAUG00000004141) #21	Cd93 (ENSMAUG00000019441) #22	Sstr4 (ENSMAUG00000008430)	Foxa2 (ENSMAUG00000016457) #24	Pax1 (ENSMAUG00000019674) #27	Nkx2-2 (ENSMAUG00000004347) #30	Nkx2-4 (ENSMAUG00000013928) #32	Xrn2 (ENSMAUG00000021842) #33	Kiz (ENSMAUG00000012933) #34	Ralgapa2 (ENSMAUG00000000917) #35	Insm1 (ENSMAUG00000008643) #36	Cfap61 (ENSMAUG00000021388) #37	ENSMAUG00000018263	ENSMAUG00000014865	Crnkl1 (ENSMAUG00000020764)	Naa20 (ENSMAUG00000016403)	Rin2 (ENSMAUG00000010319)
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00950000183147.B #9	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.b.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Northern American deer mouse	MODERN SPECIES	17	Syndig1 (ENSPEMG00000002878) #9	Cst10 (ENSPEMG00000018501) ##12	ENSPEMG00000025257	ENSPEMG00000028985 ##12	Cst3 (ENSPEMG00000019347) ##12	Cst9 (ENSPEMG00000020106)	Cst13 (ENSPEMG00000005338) #14	Cst8 (ENSPEMG00000030932) #15	Cst12 (ENSPEMG00000000557) #16	Cstdc1 (ENSPEMG00000018705) ##16	Cst11 (ENSPEMG00000000143) #17	Cstl1 (ENSPEMG00000015396) #18	Napb (ENSPEMG00000014658) #19	Gzf1 (ENSPEMG00000011285) #20	Nxt1 (ENSPEMG00000010397) #21	Cd93 (ENSPEMG00000009909) #22	Thbd (ENSPEMG00000013258) #23	Sstr4 (ENSPEMG00000013404)	Foxa2 (ENSPEMG00000018383) #24	ENSPEMG00000013352	Pax1 (ENSPEMG00000013032) #27	Nkx2-2 (ENSPEMG00000031205) #30	Xrn2 (ENSPEMG00000000111) #33	Kiz (ENSPEMG00000019926) #34	ENSPEMG00000018301	Ralgapa2 (ENSPEMG00000015207) #35	Insm1 (ENSPEMG00000011704) #36	Cfap61 (ENSPEMG00000019999) #37	Crnkl1 (ENSPEMG00000000073)	Naa20 (ENSPEMG00000019944)	Rin2 (ENSPEMG00000007218)
Prairie vole	MODERN SPECIES	86				Cst3 (ENSMOCG00000018857) ##12	Cstdc2 (ENSMOCG00000021896)	Cst13 (ENSMOCG00000012990) #14	Cst8 (ENSMOCG00000020831) #15	Cst12 (ENSMOCG00000013277) #16	Cstdc1 (ENSMOCG00000015424) ##16	Cst11 (ENSMOCG00000016678) #17	Cstl1 (ENSMOCG00000019330) #18	Napb (ENSMOCG00000000502) #19	Gzf1 (ENSMOCG00000017816) #20	Nxt1 (ENSMOCG00000018712) #21	ENSMOCG00000014565	Cd93 (ENSMOCG00000008988) #22	Thbd (ENSMOCG00000004558) #23	Sstr4 (ENSMOCG00000004743)	Foxa2 (ENSMOCG00000017025) #24	Pax1 (ENSMOCG00000000474) #27	Nkx2-2 (ENSMOCG00000016851) #30	Nkx2-4 (ENSMOCG00000012451) #32	Xrn2 (ENSMOCG00000012588) #33	Kiz (ENSMOCG00000022509) #34	ENSMOCG00000020632	Ralgapa2 (ENSMOCG00000015663) #35	Insm1 (ENSMOCG00000010418) #36	Cfap61 (ENSMOCG00000001829) #37	ENSMOCG00000000681	ENSMOCG00000021892	Rin2 (ENSMOCG00000011014)
Murinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #9	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Mus	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #9	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Mus_A	ANCESTRAL SPECIES		ENSGT00950000183147.B #9	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00970000195442	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931.m	ENSGT00550000075046	ENSGT00940000154866.B
Mus_B	ANCESTRAL SPECIES	1	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000172008	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00970000195442	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931.m	ENSGT00550000075046	ENSGT00940000154866.B
Mouse	MODERN SPECIES	11	Syndig1 (ENSMUSG00000074736) #9	Cst10 (ENSMUSG00000033156) ##12	Gm1330 (ENSMUSG00000063507)	Cst3 (ENSMUSG00000027447) ##12	Cstdc2 (ENSMUSG00000027446)	Cst9 (ENSMUSG00000027445)	Cst13 (ENSMUSG00000036924) #14	Cst8 (ENSMUSG00000027442) #15	Cst12 (ENSMUSG00000027443) #16	Cstdc1 (ENSMUSG00000027444) ##16	Cst11 (ENSMUSG00000036958) #17	Cstl1 (ENSMUSG00000055177) #18	Napb (ENSMUSG00000027438) #19	Gzf1 (ENSMUSG00000027439) #20	Nxt1 (ENSMUSG00000036992) #21	Cd93 (ENSMUSG00000027435) #22	Thbd (ENSMUSG00000074743) #23	Sstr4 (ENSMUSG00000037014)	Foxa2 (ENSMUSG00000037025) #24	Pax1 (ENSMUSG00000037034) #27	Nkx2-2 (ENSMUSG00000027434) #30	Nkx2-4 (ENSMUSG00000054160) #32	Xrn2 (ENSMUSG00000027433) #33	Kiz (ENSMUSG00000074749) #34	Ralgapa2 (ENSMUSG00000037110) #35	Insm1 (ENSMUSG00000068154) #36	Cfap61 (ENSMUSG00000037143) #37	Crnkl1 (ENSMUSG00000001767)	Naa20 (ENSMUSG00000002728)	Rin2 (ENSMUSG00000001768)	Slc24a3 (ENSMUSG00000063873)
Mus_C	ANCESTRAL SPECIES		ENSGT00860000135980	ENSGT00940000154755.c.b.a ##12	ENSGT00940000172008	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00970000195442	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931.m	ENSGT00550000075046	ENSGT00940000154866.B
spretus	MODERN SPECIES	11	Syndig1 (MGP_SPRETEiJ_G0025340) #9	Cst10 (MGP_SPRETEiJ_G0025339) ##12	MGP_SPRETEiJ_G0025338	Cst3 (MGP_SPRETEiJ_G0025337) ##12	Cstdc2 (MGP_SPRETEiJ_G0025336)	Cst9 (MGP_SPRETEiJ_G0025335)	Cst13 (MGP_SPRETEiJ_G0025334) #14	Cst8 (MGP_SPRETEiJ_G0025333) #15	Cst12 (MGP_SPRETEiJ_G0025332) #16	Cstdc1 (MGP_SPRETEiJ_G0025331) ##16	Cst11 (MGP_SPRETEiJ_G0025330) #17	Cstl1 (MGP_SPRETEiJ_G0025329) #18	Napb (MGP_SPRETEiJ_G0025328) #19	Gzf1 (MGP_SPRETEiJ_G0025327) #20	Nxt1 (MGP_SPRETEiJ_G0025326) #21	Cd93 (MGP_SPRETEiJ_G0025325) #22	Thbd (MGP_SPRETEiJ_G0025324) #23	Sstr4 (MGP_SPRETEiJ_G0025323)	Foxa2 (MGP_SPRETEiJ_G0025322) #24	Pax1 (MGP_SPRETEiJ_G0025321) #27	Nkx2-2 (MGP_SPRETEiJ_G0025320) #30	Nkx2-4 (MGP_SPRETEiJ_G0025319) #32	Xrn2 (MGP_SPRETEiJ_G0025318) #33	MGP_SPRETEiJ_G0025317	Kiz (MGP_SPRETEiJ_G0025316) #34	Ralgapa2 (MGP_SPRETEiJ_G0025315) #35	Insm1 (MGP_SPRETEiJ_G0025314) #36	Cfap61 (MGP_SPRETEiJ_G0025313) #37	Crnkl1 (MGP_SPRETEiJ_G0025312)	Naa20 (MGP_SPRETEiJ_G0025311)	Rin2 (MGP_SPRETEiJ_G0025310)
Steppe mouse	MODERN SPECIES	41			Cst3 (ENSMSIG00000003295) ##12	Cstdc2 (ENSMSIG00000003283)	Cst9 (ENSMSIG00000003261)	Cst13 (ENSMSIG00000003223) #14	Cst8 (ENSMSIG00000003194) #15	Cst12 (ENSMSIG00000003169) #16	Cstdc1 (ENSMSIG00000003153) ##16	Cst11 (ENSMSIG00000003137) #17	Cstl1 (ENSMSIG00000003118) #18	Napb (ENSMSIG00000003094) #19	Gzf1 (ENSMSIG00000003080) #20	Nxt1 (ENSMSIG00000003067) #21	ENSMSIG00000003019	Cd93 (ENSMSIG00000002996) #22	Thbd (ENSMSIG00000002989) #23	Sstr4 (ENSMSIG00000002973)	Foxa2 (ENSMSIG00000002945) #24
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0024422	Syndig1 (MGP_CAROLIEiJ_G0024421) #9	Cst10 (MGP_CAROLIEiJ_G0024420) ##12	Cst3 (MGP_CAROLIEiJ_G0024419) ##12	Cstdc2 (MGP_CAROLIEiJ_G0024418)	Cst9 (MGP_CAROLIEiJ_G0024417)	Cst13 (MGP_CAROLIEiJ_G0024416) #14	Cst8 (MGP_CAROLIEiJ_G0024415) #15	Cst12 (MGP_CAROLIEiJ_G0024414) #16	Cstdc1 (MGP_CAROLIEiJ_G0024413) ##16	Cst11 (MGP_CAROLIEiJ_G0024412) #17	Cstl1 (MGP_CAROLIEiJ_G0024411) #18	Napb (MGP_CAROLIEiJ_G0024410) #19	Gzf1 (MGP_CAROLIEiJ_G0024409) #20	Nxt1 (MGP_CAROLIEiJ_G0024408) #21	Cd93 (MGP_CAROLIEiJ_G0024407) #22	Thbd (MGP_CAROLIEiJ_G0024406) #23	Sstr4 (MGP_CAROLIEiJ_G0024405)	Foxa2 (MGP_CAROLIEiJ_G0024404) #24	Pax1 (MGP_CAROLIEiJ_G0024403) #27	Nkx2-2 (MGP_CAROLIEiJ_G0024402) #30	Nkx2-4 (MGP_CAROLIEiJ_G0024401) #32	Xrn2 (MGP_CAROLIEiJ_G0024400) #33	MGP_CAROLIEiJ_G0024399	Kiz (MGP_CAROLIEiJ_G0024398) #34	Ralgapa2 (MGP_CAROLIEiJ_G0024397) #35	Insm1 (MGP_CAROLIEiJ_G0024396) #36	Cfap61 (MGP_CAROLIEiJ_G0024395) #37	Crnkl1 (MGP_CAROLIEiJ_G0024394)	Naa20 (MGP_CAROLIEiJ_G0024393)	Rin2 (MGP_CAROLIEiJ_G0024392)
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025865	MGP_PahariEiJ_G0025864	Syndig1 (MGP_PahariEiJ_G0025863) #9	Cst10 (MGP_PahariEiJ_G0025862) ##12	Cst3 (MGP_PahariEiJ_G0025861) ##12	Cstdc2 (MGP_PahariEiJ_G0025860)	Cst13 (MGP_PahariEiJ_G0025859) #14	Cst8 (MGP_PahariEiJ_G0025858) #15	Cst12 (MGP_PahariEiJ_G0025857) #16	Cstdc1 (MGP_PahariEiJ_G0025856) ##16	Cst11 (MGP_PahariEiJ_G0025855) #17	Cstl1 (MGP_PahariEiJ_G0025854) #18	Napb (MGP_PahariEiJ_G0025853) #19	Gzf1 (MGP_PahariEiJ_G0025852) #20	Nxt1 (MGP_PahariEiJ_G0025851) #21	Cd93 (MGP_PahariEiJ_G0025850) #22	Thbd (MGP_PahariEiJ_G0025849) #23	Sstr4 (MGP_PahariEiJ_G0025848)	Foxa2 (MGP_PahariEiJ_G0025847) #24	Pax1 (MGP_PahariEiJ_G0025846) #27	Nkx2-2 (MGP_PahariEiJ_G0025845) #30	Nkx2-4 (MGP_PahariEiJ_G0025844) #32	Xrn2 (MGP_PahariEiJ_G0025843) #33	Kiz (MGP_PahariEiJ_G0025842) #34	Ralgapa2 (MGP_PahariEiJ_G0025841) #35	Insm1 (MGP_PahariEiJ_G0025840) #36	Cfap61 (MGP_PahariEiJ_G0025839) #37	Crnkl1 (MGP_PahariEiJ_G0025838)	Naa20 (MGP_PahariEiJ_G0025837)	Rin2 (MGP_PahariEiJ_G0025836)	MGP_PahariEiJ_G0025835
Rat	MODERN SPECIES	13	Fth1-ps5 (ENSRNOG00000033100)	Andpro (ENSRNOG00000031840) ##12	AABR07054186.1 (ENSRNOG00000032769)	Cst3 (ENSRNOG00000005195) ##12	Cstdc2 (ENSRNOG00000005178)	Cst9l (ENSRNOG00000005162)	Cst13 (ENSRNOG00000005103) #14	Cst8 (ENSRNOG00000004989) #15	Cst12 (ENSRNOG00000004946) #16	LOC257643 (ENSRNOG00000004858) ##16	Cst11 (ENSRNOG00000004808) #17	Cstl1 (ENSRNOG00000004779) #18	Napb (ENSRNOG00000004753) #19	Gzf1 (ENSRNOG00000004735) #20	Nxt1 (ENSRNOG00000004700) #21	Cd93 (ENSRNOG00000024799) #22	Thbd (ENSRNOG00000004687) #23	Sstr4 (ENSRNOG00000004641)	Foxa2 (ENSRNOG00000013133) #24	Pax1 (ENSRNOG00000024882) #27	Nkx2-2 (ENSRNOG00000012728) #30	Nkx2-4 (ENSRNOG00000012647) #32	Xrn2 (ENSRNOG00000011785) #33	Kiz (ENSRNOG00000025141) #34	ENSRNOG00000070752	Ralgapa2 (ENSRNOG00000036964) #35	Insm1 (ENSRNOG00000068937) #36	AABR07054096.1 (ENSRNOG00000011028) #37	Crnkl1 (ENSRNOG00000010587)	Naa20 (ENSRNOG00000010523)	Rin2 (ENSRNOG00000010131)
Upper Galilee mountains blind mole rat	MODERN SPECIES	353											Cst11 (ENSNGAG00000023054) #17	Cstl1 (ENSNGAG00000023212) #18	Napb (ENSNGAG00000023681) #19	Gzf1 (ENSNGAG00000024012) #20	Nxt1 (ENSNGAG00000000803) #21	Cd93 (ENSNGAG00000013591) #22	Sstr4 (ENSNGAG00000012473)
Lesser Egyptian jerboa	MODERN SPECIES	159						Cst3 (ENSJJAG00000013565) ##12	Cst9 (ENSJJAG00000013510)	Cst13 (ENSJJAG00000013369) #14	Cst8 (ENSJJAG00000013212) #15	Cst12 (ENSJJAG00000012500) #16	Cstdc1 (ENSJJAG00000012315) ##16	Cstl1 (ENSJJAG00000011653) #18	Napb (ENSJJAG00000010872) #19	Gzf1 (ENSJJAG00000008172) #20	ENSJJAG00000012022 #21	Cd93 (ENSJJAG00000007591) #22	Sstr4 (ENSJJAG00000023336)	Foxa2 (ENSJJAG00000023228) #24	Pax1 (ENSJJAG00000023177) #27	Nkx2-2 (ENSJJAG00000022426) #30	Nkx2-4 (ENSJJAG00000022335) #32	Xrn2 (ENSJJAG00000022128) #33	Kiz (ENSJJAG00000021546) #34	ENSJJAG00000020834	ENSJJAG00000020710 #35	ENSJJAG00000020467 #35	Insm1 (ENSJJAG00000020276) #36	Cfap61 (ENSJJAG00000018922) #37	Crnkl1 (ENSJJAG00000016926)	Naa20 (ENSJJAG00000016004)	ENSJJAG00000015745
Kangaroo rat	MODERN SPECIES	418	Pygb (ENSDORG00000007176)	Entpd6 (ENSDORG00000007175)	Vsx1 (ENSDORG00000005490)	Acss1 (ENSDORG00000004006)	Apmap (ENSDORG00000025391) #8	Cst7 (ENSDORG00000005298) #7	Syndig1 (ENSDORG00000003111) #9	ENSDORG00000008948 ##12	Cst3 (ENSDORG00000027673) ##12	Cst13 (ENSDORG00000027228) #14	Cst8 (ENSDORG00000011859) #15	Cst12 (ENSDORG00000023744) #16	Napb (ENSDORG00000011856) #19	Gzf1 (ENSDORG00000011855) #20	Nxt1 (ENSDORG00000024690) #21	Cd93 (ENSDORG00000028704) #22	Sstr4 (ENSDORG00000010486)	Foxa2 (ENSDORG00000027269) #24	Pax1 (ENSDORG00000016051) #27	Nkx2-2 (ENSDORG00000007972) #30	Nkx2-4 (ENSDORG00000023542) #32	Xrn2 (ENSDORG00000005434) #33	ENSDORG00000024554 #35	ENSDORG00000025962 #35	Insm1 (ENSDORG00000009864) #36	ENSDORG00000000395	ENSDORG00000029623 #37	ENSDORG00000024717 #37	ENSDORG00000000394	Naa20 (ENSDORG00000028339)	Rin2 (ENSDORG00000000392)
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.d	ENSGT00940000164098 #13	ENSGT00940000161877.c.b	ENSGT00940000161877.c.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000154755.c.b.e ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000164098 #13	ENSGT00940000161877.c.b	ENSGT00940000161877.d	ENSGT00940000161877.c.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000154755.c.b.f ##12	ENSGT00940000154755.c.b.e ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.b	ENSGT00940000161877.d	ENSGT00940000161877.c.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00390000007696.e.a.a.a	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046
Marmotini_b	ANCESTRAL SPECIES	140	ENSGT00940000154755.c.b.f ##12	ENSGT00940000154755.c.b.e ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.c.b	ENSGT00940000161877.d	ENSGT00940000161877.c.a	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00390000007696.e.a.a.a
Squirrel	MODERN SPECIES	220	ENSSTOG00000023496	ENSSTOG00000026963 ##12	ENSSTOG00000015564	ENSSTOG00000028869	ENSSTOG00000004129 #14	ENSSTOG00000020102	CST8 (ENSSTOG00000004122) #15	ENSSTOG00000024532 #16	ENSSTOG00000021841 ##16	CST11 (ENSSTOG00000004847) #17	CSTL1 (ENSSTOG00000024563) #18	NAPB (ENSSTOG00000022350) #19	ENSSTOG00000030626	GZF1 (ENSSTOG00000009820) #20	NXT1 (ENSSTOG00000026331) #21	CD93 (ENSSTOG00000024530) #22	SSTR4 (ENSSTOG00000021697)	FOXA2 (ENSSTOG00000020150) #24	PAX1 (ENSSTOG00000003000) #27	NKX2-2 (ENSSTOG00000021450) #30	XRN2 (ENSSTOG00000000589) #33	KIZ (ENSSTOG00000007449) #34
Arctic ground squirrel	MODERN SPECIES	114	ENSUPAG00010009918	ENSUPAG00010009902	ENSUPAG00010009895 #14	CST8 (ENSUPAG00010009884) #15	ENSUPAG00010009878 #16	ENSUPAG00010009872 ##16	CST11 (ENSUPAG00010009858) #17	CSTL1 (ENSUPAG00010009856) #18	ENSUPAG00010009855	ENSUPAG00010009850	NAPB (ENSUPAG00010009788) #19	GZF1 (ENSUPAG00010009780) #20	NXT1 (ENSUPAG00010009776) #21	ENSUPAG00010009772	ENSUPAG00010009759	CD93 (ENSUPAG00010009758) #22	THBD (ENSUPAG00010009753) #23	SSTR4 (ENSUPAG00010009751)	FOXA2 (ENSUPAG00010009738) #24	ENSUPAG00010009726	PAX1 (ENSUPAG00010009718) #27	NKX2-2 (ENSUPAG00010009710) #30	NKX2-4 (ENSUPAG00010009706) #32	XRN2 (ENSUPAG00010009667) #33	KIZ (ENSUPAG00010009237) #34	ENSUPAG00010009220
Alpin marmot	MODERN SPECIES		SYNDIG1 (ENSMMMG00000004598) #9	ENSMMMG00000004547 ##12	ENSMMMG00000004528 ##12	ENSMMMG00000004523	ENSMMMG00000004513 #14	CST8 (ENSMMMG00000004504) #15	ENSMMMG00000004491 #16	ENSMMMG00000004483 ##16	CST11 (ENSMMMG00000004467) #17	CSTL1 (ENSMMMG00000004456) #18	ENSMMMG00000004433	NAPB (ENSMMMG00000004419) #19	GZF1 (ENSMMMG00000004407) #20	NXT1 (ENSMMMG00000004405) #21	ENSMMMG00000004398	CD93 (ENSMMMG00000004395) #22	THBD (ENSMMMG00000004391) #23	SSTR4 (ENSMMMG00000004385)	FOXA2 (ENSMMMG00000004350) #24	PAX1 (ENSMMMG00000004326) #27	NKX2-2 (ENSMMMG00000004284) #30	XRN2 (ENSMMMG00000004161) #33	KIZ (ENSMMMG00000003881) #34	ENSMMMG00000003871	RALGAPA2 (ENSMMMG00000003453) #35	ENSMMMG00000003417	ENSMMMG00000003408 #37	ENSMMMG00000003290 #37	CRNKL1 (ENSMMMG00000003244)	NAA20 (ENSMMMG00000003240)	RIN2 (ENSMMMG00000003172)
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005012618	ENSSVLG00005012635 ##12	ENSSVLG00005012678 #13	ENSSVLG00005012749	ENSSVLG00005012823	ENSSVLG00005012871 #14	CST8 (ENSSVLG00005000126) #15	ENSSVLG00005000133 #16	ENSSVLG00005000139 ##16	CST11 (ENSSVLG00005000162) #17	CSTL1 (ENSSVLG00005000168) #18	NAPB (ENSSVLG00005000227) #19	GZF1 (ENSSVLG00005000288) #20	ENSSVLG00005000304 #21	ENSSVLG00005000317 #21	CD93 (ENSSVLG00005000330) #22	THBD (ENSSVLG00005000349) #23	SSTR4 (ENSSVLG00005000359)	ENSSVLG00005000368	FOXA2 (ENSSVLG00005000389) #24	ENSSVLG00005000403	PAX1 (ENSSVLG00005000421) #27	NKX2-2 (ENSSVLG00005000441) #30	NKX2-4 (ENSSVLG00005000455) #32	XRN2 (ENSSVLG00005000470) #33	KIZ (ENSSVLG00005000513) #34	ENSSVLG00005000546	RALGAPA2 (ENSSVLG00005000611) #35	INSM1 (ENSSVLG00005000689) #36	CFAP61 (ENSSVLG00005000731) #37	ENSSVLG00005000777
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.d	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987.n.a #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b.c ##12	ENSGT00940000154755.c.b.d ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000161877.d	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987.n.a #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.c.b.c ##12	ENSGT00940000154755.c.b.d ##12	ENSGT00940000154755.c.a ##12	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987.n.a #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Long-tailed chinchilla	MODERN SPECIES	122	VSX1 (ENSCLAG00000015160)	ACSS1 (ENSCLAG00000012190)	APMAP (ENSCLAG00000013445) #8	CST7 (ENSCLAG00000015428) #7	SYNDIG1 (ENSCLAG00000012586) #9	ENSCLAG00000012454 ##12	ENSCLAG00000015899 ##12	ENSCLAG00000017066 #14	ENSCLAG00000015212 #15	ENSCLAG00000015474 #16	ENSCLAG00000011384 #17	CSTL1 (ENSCLAG00000012446) #18	NAPB (ENSCLAG00000011540) #19	GZF1 (ENSCLAG00000014714) #20	NXT1 (ENSCLAG00000012493) #21	CD93 (ENSCLAG00000012062) #22	THBD (ENSCLAG00000011994) #23	FOXA2 (ENSCLAG00000014548) #24	PAX1 (ENSCLAG00000016362) #27	NKX2-2 (ENSCLAG00000016430) #30	XRN2 (ENSCLAG00000013419) #33	KIZ (ENSCLAG00000012565) #34	RALGAPA2 (ENSCLAG00000012502) #35	CFAP61 (ENSCLAG00000014155) #37	CRNKL1 (ENSCLAG00000013859)	NAA20 (ENSCLAG00000014313)	RIN2 (ENSCLAG00000015234)	SLC24A3 (ENSCLAG00000015547)	DTD1 (ENSCLAG00000015302)	SEC23B (ENSCLAG00000014924)	RBBP9 (ENSCLAG00000014851)
Degu	MODERN SPECIES	114	VSX1 (ENSODEG00000010102)	ACSS1 (ENSODEG00000010733)	APMAP (ENSODEG00000010678) #8	CST7 (ENSODEG00000011264) #7	SYNDIG1 (ENSODEG00000012369) #9	ENSODEG00000019797	CST3 (ENSODEG00000012334) ##12	ENSODEG00000010611 #14	ENSODEG00000010448 #15	ENSODEG00000012595 #16	CST11 (ENSODEG00000013274) #17	CSTL1 (ENSODEG00000010719) #18	NAPB (ENSODEG00000011065) #19	GZF1 (ENSODEG00000013020) #20	NXT1 (ENSODEG00000019900) #21	CD93 (ENSODEG00000012518) #22	THBD (ENSODEG00000010709) #23	FOXA2 (ENSODEG00000011162) #24	PAX1 (ENSODEG00000012427) #27	ENSODEG00000019878	ENSODEG00000019885	NKX2-2 (ENSODEG00000012371) #30	ENSODEG00000012687	NKX2-4 (ENSODEG00000010842) #32	ENSODEG00000010745 #33	ENSODEG00000011188	KIZ (ENSODEG00000011491) #34	RALGAPA2 (ENSODEG00000011023) #35	INSM1 (ENSODEG00000020028) #36	ENSODEG00000011346	ENSODEG00000012124 #37
Guinea pig	MODERN SPECIES	8	APMAP (ENSCPOG00000008131) #8	CST7 (ENSCPOG00000008022) #7	SYNDIG1 (ENSCPOG00000004943) #9	ENSCPOG00000026799 ##12	ENSCPOG00000030984 ##12	ENSCPOG00000030716 ##12	ENSCPOG00000025294	ENSCPOG00000021926 #14	CST8 (ENSCPOG00000005550) #15	ENSCPOG00000025993 #16	ENSCPOG00000003822 #17	CSTL1 (ENSCPOG00000008734) #18	NAPB (ENSCPOG00000039063) #19	GZF1 (ENSCPOG00000010790) #20	NXT1 (ENSCPOG00000008817) #21	CD93 (ENSCPOG00000010252) #22	THBD (ENSCPOG00000030575) #23	FOXA2 (ENSCPOG00000033370) #24	PAX1 (ENSCPOG00000002886) #27	NKX2-2 (ENSCPOG00000000408) #30	XRN2 (ENSCPOG00000009407) #33	KIZ (ENSCPOG00000005683) #34	RALGAPA2 (ENSCPOG00000001602) #35	ENSCPOG00000038064	ENSCPOG00000039658 #37	ENSCPOG00000001594 #37	CRNKL1 (ENSCPOG00000004418)	NAA20 (ENSCPOG00000001593)	RIN2 (ENSCPOG00000013179)	SLC24A3 (ENSCPOG00000011970)	DTD1 (ENSCPOG00000002416)
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Suina	ANCESTRAL SPECIES	9	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Chacoan peccary	MODERN SPECIES	801	VSX1 (ENSCWAG00000016751)	ACSS1 (ENSCWAG00000016802)	APMAP (ENSCWAG00000016906) #8	CST7 (ENSCWAG00000016930) #7	SYNDIG1 (ENSCWAG00000016959) #9	CST3 (ENSCWAG00000016979) #12	ENSCWAG00000017004	ENSCWAG00000017060 #14	CST8 (ENSCWAG00000017086) #15	ENSCWAG00000017127	CST11 (ENSCWAG00000017158) #17	CSTL1 (ENSCWAG00000017189) #18	NAPB (ENSCWAG00000017225) #19	GZF1 (ENSCWAG00000017910) #20	NXT1 (ENSCWAG00000017956) #21	CD93 (ENSCWAG00000017965) #22	THBD (ENSCWAG00000017996) #23	FOXA2 (ENSCWAG00000007985) #24	PAX1 (ENSCWAG00000008052) #27	NKX2-2 (ENSCWAG00000008122) #30	NKX2-4 (ENSCWAG00000008162) #32	XRN2 (ENSCWAG00000008201) #33	KIZ (ENSCWAG00000008351) #34	RALGAPA2 (ENSCWAG00000008863) #35	INSM1 (ENSCWAG00000009223) #36	CFAP61 (ENSCWAG00000009261) #37	CRNKL1 (ENSCWAG00000009575)	NAA20 (ENSCWAG00000009645)	ENSCWAG00000009830	SLC24A3 (ENSCWAG00000009885)	SCP2D1 (ENSCWAG00000010002)
Pig	MODERN SPECIES	8	VSX1 (ENSSSCG00000023887)	ACSS1 (ENSSSCG00000007133)	APMAP (ENSSSCG00000036286) #8	CST7 (ENSSSCG00000007131) #7	SYNDIG1 (ENSSSCG00000007130) #9	CST3 (ENSSSCG00000037360) #12	CST9L (ENSSSCG00000029289)	ENSSSCG00000007125 #14	ENSSSCG00000007124 #15	ENSSSCG00000007123	CST11 (ENSSSCG00000007122) #17	CSTL1 (ENSSSCG00000007121) #18	NAPB (ENSSSCG00000031219) #19	GZF1 (ENSSSCG00000007117) #20	NXT1 (ENSSSCG00000007119) #21	CD93 (ENSSSCG00000007116) #22	THBD (ENSSSCG00000053422) #23	FOXA2 (ENSSSCG00000007114) #24	PAX1 (ENSSSCG00000007112) #27	NKX2-2 (ENSSSCG00000040017) #30	NKX2-4 (ENSSSCG00000007110) #32	XRN2 (ENSSSCG00000007109) #33	KIZ (ENSSSCG00000007108) #34	ENSSSCG00000048962	RALGAPA2 (ENSSSCG00000026506) #35	INSM1 (ENSSSCG00000062159) #36	CFAP61 (ENSSSCG00000038858) #37	CRNKL1 (ENSSSCG00000038587)	NAA20 (ENSSSCG00000028132)	ENSSSCG00000028004	SLC24A3 (ENSSSCG00000007100)
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Odontoceti	ANCESTRAL SPECIES	3	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000163249 #14	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000163249 #14	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000163249 #14	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931
Monodontidae	ANCESTRAL SPECIES	1	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000163249 #14	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931	ENSGT00550000075046
Narwhal	MODERN SPECIES	299	PYGB (ENSMMNG00015013588)	ENTPD6 (ENSMMNG00015013636)	VSX1 (ENSMMNG00015013692)	ACSS1 (ENSMMNG00015013713)	APMAP (ENSMMNG00015013737) #8	CST7 (ENSMMNG00015013746) #7	SYNDIG1 (ENSMMNG00015013754) #9	CST3 (ENSMMNG00015013767) #12	ENSMMNG00015013782	ENSMMNG00015013807 #14	CST11 (ENSMMNG00015013816) #17	CSTL1 (ENSMMNG00015013827) #18	ENSMMNG00015013840 #19	GZF1 (ENSMMNG00015013857) #20	NXT1 (ENSMMNG00015013866) #21	CD93 (ENSMMNG00015013869) #22	THBD (ENSMMNG00015013881) #23	SSTR4 (ENSMMNG00015013888)	FOXA2 (ENSMMNG00015013909) #24	PAX1 (ENSMMNG00015013924) #27	NKX2-2 (ENSMMNG00015013937) #30	NKX2-4 (ENSMMNG00015013943) #32	XRN2 (ENSMMNG00015013954) #33	KIZ (ENSMMNG00015014032) #34	RALGAPA2 (ENSMMNG00015014137) #35	INSM1 (ENSMMNG00015014194) #36	CFAP61 (ENSMMNG00015014206) #37	ENSMMNG00015014237	ENSMMNG00015014247	CRNKL1 (ENSMMNG00015014256)	NAA20 (ENSMMNG00015014274)
Beluga whale	MODERN SPECIES	48	ENTPD6 (ENSDLEG00000004868)	VSX1 (ENSDLEG00000004879)	ACSS1 (ENSDLEG00000004910)	APMAP (ENSDLEG00000004961) #8	CST7 (ENSDLEG00000004970) #7	SYNDIG1 (ENSDLEG00000004982) #9	CST3 (ENSDLEG00000004985) #12	ENSDLEG00000005018	ENSDLEG00000005035 #14	ENSDLEG00000005044 ##16	CST11 (ENSDLEG00000005067) #17	CSTL1 (ENSDLEG00000005075) #18	ENSDLEG00000005080 #19	GZF1 (ENSDLEG00000005091) #20	NXT1 (ENSDLEG00000005096) #21	CD93 (ENSDLEG00000005100) #22	THBD (ENSDLEG00000005104) #23	SSTR4 (ENSDLEG00000005108)	FOXA2 (ENSDLEG00000005115) #24	PAX1 (ENSDLEG00000005123) #27	NKX2-2 (ENSDLEG00000005132) #30	NKX2-4 (ENSDLEG00000005154) #32	XRN2 (ENSDLEG00000005166) #33	KIZ (ENSDLEG00000005207) #34	RALGAPA2 (ENSDLEG00000005252) #35	CFAP61 (ENSDLEG00000005301) #37	ENSDLEG00000005319	ENSDLEG00000005324	CRNKL1 (ENSDLEG00000005333)	NAA20 (ENSDLEG00000005370)	RIN2 (ENSDLEG00000005378)
Vaquita	MODERN SPECIES	6	GINS1 (ENSPSNG00000009717)	ABHD12 (ENSPSNG00000009768)	PYGB (ENSPSNG00000009852)	ENTPD6 (ENSPSNG00000010051)	VSX1 (ENSPSNG00000010521)	ACSS1 (ENSPSNG00000010625)	APMAP (ENSPSNG00000010757) #8	CST7 (ENSPSNG00000010836) #7	SYNDIG1 (ENSPSNG00000010897) #9	CST3 (ENSPSNG00000010957) #12	ENSPSNG00000011009	ENSPSNG00000011147 #14	ENSPSNG00000011208 #19	GZF1 (ENSPSNG00000011314) #20	NXT1 (ENSPSNG00000011355) #21	CD93 (ENSPSNG00000011407) #22	THBD (ENSPSNG00000011441) #23	SSTR4 (ENSPSNG00000011467)	FOXA2 (ENSPSNG00000004696) #24	PAX1 (ENSPSNG00000004773) #27	NKX2-2 (ENSPSNG00000004832) #30	NKX2-4 (ENSPSNG00000004868) #32	XRN2 (ENSPSNG00000004918) #33	KIZ (ENSPSNG00000005041) #34	ENSPSNG00000005168 #35	ENSPSNG00000005197 #35	INSM1 (ENSPSNG00000005223) #36	ENSPSNG00000005235	ENSPSNG00000005250 #37	ENSPSNG00000005292 #37	BLCAP (ENSPSNG00000005346)
Dolphin	MODERN SPECIES	4356																CD93 (ENSTTRG00000003436) #22	THBD (ENSTTRG00000003437) #23
Sperm whale	MODERN SPECIES	5	SCP2D1 (ENSPCTG00005011622)	SLC24A3 (ENSPCTG00005011433)	ENSPCTG00005011375	NAA20 (ENSPCTG00005011278)	CRNKL1 (ENSPCTG00005011230)	CFAP61 (ENSPCTG00005011086) #37	INSM1 (ENSPCTG00005011042) #36	RALGAPA2 (ENSPCTG00005010848) #35	KIZ (ENSPCTG00005010162) #34	XRN2 (ENSPCTG00005010006) #33	NKX2-4 (ENSPCTG00005009959) #32	NKX2-2 (ENSPCTG00005009931) #30	PAX1 (ENSPCTG00005009858) #27	FOXA2 (ENSPCTG00005009780) #24	SSTR4 (ENSPCTG00005009716)	CD93 (ENSPCTG00005009671) #22	CST3 (ENSPCTG00005009637) #12	ENSPCTG00005009585	ENSPCTG00005009530	ENSPCTG00005009487 #14	ENSPCTG00005009442 ##16	CST11 (ENSPCTG00005009381) #17	CSTL1 (ENSPCTG00005009306) #18	ENSPCTG00005009273 #19	ENSPCTG00005009228 #9	CST7 (ENSPCTG00005009166) #7	APMAP (ENSPCTG00005009088) #8	ENSPCTG00005009058	VSX1 (ENSPCTG00005008966)	ENTPD6 (ENSPCTG00005008559)	ABHD12 (ENSPCTG00005008481)
Blue whale	MODERN SPECIES	6	CST7 (ENSBMSG00010012340) #7	SYNDIG1 (ENSBMSG00010012350) #9	CST3 (ENSBMSG00010012360) #12	ENSBMSG00010012375	ENSBMSG00010012390	ENSBMSG00010012402 #14	CST8 (ENSBMSG00010012422) #15	ENSBMSG00010012475	ENSBMSG00010012491 ##16	CST11 (ENSBMSG00010012502) #17	CSTL1 (ENSBMSG00010012521) #18	NAPB (ENSBMSG00010012544) #19	ENSBMSG00010012568 #20	ENSBMSG00010012580 #20	NXT1 (ENSBMSG00010012589) #21	CD93 (ENSBMSG00010012595) #22	THBD (ENSBMSG00010012612) #23	SSTR4 (ENSBMSG00010013828)	FOXA2 (ENSBMSG00010013859) #24	PAX1 (ENSBMSG00010013891) #27	NKX2-2 (ENSBMSG00010013921) #30	NKX2-4 (ENSBMSG00010013938) #32	XRN2 (ENSBMSG00010014058) #33	KIZ (ENSBMSG00010014281) #34	RALGAPA2 (ENSBMSG00010014396) #35	INSM1 (ENSBMSG00010014572) #36	CFAP61 (ENSBMSG00010014638) #37	CRNKL1 (ENSBMSG00010014711)	NAA20 (ENSBMSG00010014762)	RIN2 (ENSBMSG00010014833)	SLC24A3 (ENSBMSG00010014883)
Pecora	ANCESTRAL SPECIES	9	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Yarkand deer	MODERN SPECIES	15	ENSCHYG00000024206 #7	APMAP (ENSCHYG00000024095) #8	SYNDIG1 (ENSCHYG00000024042) #9	CST3 (ENSCHYG00000024014) #12	ENSCHYG00000023998	ENSCHYG00000023958	ENSCHYG00000023931 #14	ENSCHYG00000023900 #15	ENSCHYG00000023874	ENSCHYG00000023860 ##16	ENSCHYG00000023824 #17	ENSCHYG00000023804 #18	NAPB (ENSCHYG00000023659) #19	GZF1 (ENSCHYG00000023598) #20	NXT1 (ENSCHYG00000023576) #21	CD93 (ENSCHYG00000023556) #22	THBD (ENSCHYG00000023542) #23	ENSCHYG00000023501	ENSCHYG00000023462	FOXA2 (ENSCHYG00000023420) #24	PAX1 (ENSCHYG00000023364) #27	ENSCHYG00000023344	NKX2-2 (ENSCHYG00000023304) #30	NKX2-4 (ENSCHYG00000023282) #32	XRN2 (ENSCHYG00000022819) #33	ENSCHYG00000022761	ENSCHYG00000022734	KIZ (ENSCHYG00000022176) #34	RALGAPA2 (ENSCHYG00000021147) #35	INSM1 (ENSCHYG00000021030) #36	CFAP61 (ENSCHYG00000020914) #37
Percora_a	ANCESTRAL SPECIES	10	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Siberian musk deer	MODERN SPECIES	1194	ACSS1 (ENSMMSG00000018444)	APMAP (ENSMMSG00000018481) #8	CST7 (ENSMMSG00000018529) #7	SYNDIG1 (ENSMMSG00000018548) #9	CST3 (ENSMMSG00000018564) #12	ENSMMSG00000018584	ENSMMSG00000018603 #14	CST8 (ENSMMSG00000018626) #15	ENSMMSG00000018653	ENSMMSG00000018676 ##16	ENSMMSG00000018712 #17	CSTL1 (ENSMMSG00000018731) #18	NAPB (ENSMMSG00000018763) #19	GZF1 (ENSMMSG00000018836) #20	NXT1 (ENSMMSG00000018866) #21	CD93 (ENSMMSG00000018871) #22	THBD (ENSMMSG00000018897) #23	FOXA2 (ENSMMSG00000018910) #24	PAX1 (ENSMMSG00000018943) #27	NKX2-2 (ENSMMSG00000018973) #30	ENSMMSG00000018994	ENSMMSG00000019016	NKX2-4 (ENSMMSG00000019032) #32	XRN2 (ENSMMSG00000019064) #33	KIZ (ENSMMSG00000019151) #34	RALGAPA2 (ENSMMSG00000019313) #35	INSM1 (ENSMMSG00000019511) #36	ENSMMSG00000019522	ENSMMSG00000019535 #37	ENSMMSG00000019564 #37	CRNKL1 (ENSMMSG00000019594)
Bovidae	ANCESTRAL SPECIES	10	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Caprinae	ANCESTRAL SPECIES	23	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183014.f.a.h.u.a.a.b.a	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155114.wb.b	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT00390000001138.a.g
Rambouillet Sheep	MODERN SPECIES	4	SYNDIG1 (ENSOARG00020005336) #9	CST3 (ENSOARG00020005311) #12	ENSOARG00020005305	ENSOARG00020005290	ENSOARG00020005269	ENSOARG00020005253 #14	ENSOARG00020005233 #15	ENSOARG00020005223	ENSOARG00020005206 ##16	ENSOARG00020005178 #17	CSTL1 (ENSOARG00020005157) #18	NAPB (ENSOARG00020004860) #19	GZF1 (ENSOARG00020004766) #20	NXT1 (ENSOARG00020004744) #21	ENSOARG00020004719	CD93 (ENSOARG00020004706) #22	ENSOARG00020004667	FOXA2 (ENSOARG00020004643) #24	ENSOARG00020004631	PAX1 (ENSOARG00020004579) #27	NKX2-2 (ENSOARG00020004554) #30	NKX2-4 (ENSOARG00020004533) #32	XRN2 (ENSOARG00020004498) #33	KIZ (ENSOARG00020004321) #34	RALGAPA2 (ENSOARG00020003837) #35	INSM1 (ENSOARG00020003800) #36	CFAP61 (ENSOARG00020003632) #37	CRNKL1 (ENSOARG00020003543)	NAA20 (ENSOARG00020003499)	RIN2 (ENSOARG00020003240)	ENSOARG00020023127
Goat	MODERN SPECIES	4	ACSS1 (ENSCHIG00000021744)	APMAP (ENSCHIG00000013115) #8	CST7 (ENSCHIG00000021898) #7	SYNDIG1 (ENSCHIG00000020378) #9	CST3 (ENSCHIG00000009090) #12	ENSCHIG00000022173	ENSCHIG00000009930	ENSCHIG00000021829 #14	ENSCHIG00000025947 #15	ENSCHIG00000017766	ENSCHIG00000003642 ##16	ENSCHIG00000021813 #17	NAPB (ENSCHIG00000020249) #19	GZF1 (ENSCHIG00000008882) #20	ENSCHIG00000021979	CD93 (ENSCHIG00000009092) #22	THBD (ENSCHIG00000010975) #23	ENSCHIG00000022438	FOXA2 (ENSCHIG00000013879) #24	PAX1 (ENSCHIG00000025250) #27	NKX2-2 (ENSCHIG00000025252) #30	NKX2-4 (ENSCHIG00000017092) #32	ENSCHIG00000009213	XRN2 (ENSCHIG00000006921) #33	KIZ (ENSCHIG00000020496) #34	ENSCHIG00000001410	ENSCHIG00000005268	RALGAPA2 (ENSCHIG00000023081) #35	INSM1 (ENSCHIG00000002944) #36	CFAP61 (ENSCHIG00000022048) #37	CRNKL1 (ENSCHIG00000013171)
Bovinae	ANCESTRAL SPECIES	20	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT00390000001138.a.g.b
Bos	ANCESTRAL SPECIES	22	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554.jb #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137.d #27	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B.d	ENSGT00390000001138.a.g.b
Bos_a	ANCESTRAL SPECIES	7	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554.jb #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137.d #27	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B.d	ENSGT00960000190537
Wild yak	MODERN SPECIES	194																CD93 (ENSBMUG00000003082) #22	ENSBMUG00000003102 #23	FOXA2 (ENSBMUG00000003127) #24	PAX1 (ENSBMUG00000003140) #27	ENSBMUG00000003171	NKX2-2 (ENSBMUG00000003181) #30	XRN2 (ENSBMUG00000003295) #33	KIZ (ENSBMUG00000003411) #34	RALGAPA2 (ENSBMUG00000003599) #35	CFAP61 (ENSBMUG00000003762) #37	CRNKL1 (ENSBMUG00000003809)	NAA20 (ENSBMUG00000003835)	RIN2 (ENSBMUG00000003883)	ENSBMUG00000003910	SLC24A3 (ENSBMUG00000003930)	SCP2D1 (ENSBMUG00000003945)
Domestic yak	MODERN SPECIES	3	CST7 (ENSBGRG00000008014) #7	SYNDIG1 (ENSBGRG00000007905) #9	CST3 (ENSBGRG00000007838) #12	ENSBGRG00000007806	ENSBGRG00000007774 #14	CST8 (ENSBGRG00000007704) #15	ENSBGRG00000007655	ENSBGRG00000007612 ##16	ENSBGRG00000007520 #17	CSTL1 (ENSBGRG00000007456) #18	NAPB (ENSBGRG00000007201) #19	ENSBGRG00000007150 #20	ENSBGRG00000007097 #20	NXT1 (ENSBGRG00000007076) #21	ENSBGRG00000007043	CD93 (ENSBGRG00000006986) #22	THBD (ENSBGRG00000006963) #23	FOXA2 (ENSBGRG00000006927) #24	PAX1 (ENSBGRG00000006855) #27	ENSBGRG00000006824 #27	ENSBGRG00000006808	NKX2-2 (ENSBGRG00000006790) #30	NKX2-4 (ENSBGRG00000006760) #32	XRN2 (ENSBGRG00000006633) #33	KIZ (ENSBGRG00000006486) #34	ENSBGRG00000006333 #35	ENSBGRG00000006247 #35	INSM1 (ENSBGRG00000006219) #36	CFAP61 (ENSBGRG00000006111) #37	CRNKL1 (ENSBGRG00000006006)	NAA20 (ENSBGRG00000005893)
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877.j	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554.jb #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137.d #27	ENSGT00940000153362.a.bb.b.a	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B.d	ENSGT00390000001138.a.g.b
Hybrid Bos Indicus	MODERN SPECIES	4	ACSS1 (ENSBIXG00005011033)	APMAP (ENSBIXG00005010989) #8	CST7 (ENSBIXG00005000982) #7	SYNDIG1 (ENSBIXG00005010911) #9	ENSBIXG00005010878 #12	ENSBIXG00005010849	ENSBIXG00005000954 #14	CST8 (ENSBIXG00005006779) #15	ENSBIXG00005010816	ENSBIXG00005000950 ##16	ENSBIXG00005010800 #17	ENSBIXG00005000943 #18	NAPB (ENSBIXG00005000942) #19	GZF1 (ENSBIXG00005010698) #20	NXT1 (ENSBIXG00005010690) #21	CD93 (ENSBIXG00005010666) #22	ENSBIXG00005000916	THBD (ENSBIXG00005010640) #23	FOXA2 (ENSBIXG00005000913) #24	PAX1 (ENSBIXG00005010606) #27	ENSBIXG00005000694	ENSBIXG00005000714 #32	XRN2 (ENSBIXG00005006105) #33	ENSBIXG00005010385 #34	RALGAPA2 (ENSBIXG00005010322) #35	INSM1 (ENSBIXG00005010299) #36	CFAP61 (ENSBIXG00005010280) #37	CRNKL1 (ENSBIXG00005010247)	NAA20 (ENSBIXG00005010224)	RIN2 (ENSBIXG00005010179)	ENSBIXG00005010143
Cow	MODERN SPECIES	4	ENTPD6 (ENSBTAG00000009881)	VSX1 (ENSBTAG00000003335)	ACSS1 (ENSBTAG00000004281)	APMAP (ENSBTAG00000004278) #8	CST7 (ENSBTAG00000004273) #7	SYNDIG1 (ENSBTAG00000040147) #9	CST3 (ENSBTAG00000000598) #12	ENSBTAG00000032687	ENSBTAG00000015949 #14	CST8 (ENSBTAG00000032694) #15	MGC133636 (ENSBTAG00000013416) ##16	ENSBTAG00000027420	NAPB (ENSBTAG00000032704) #19	GZF1 (ENSBTAG00000008908) #20	NXT1 (ENSBTAG00000004993) #21	CD93 (ENSBTAG00000004207) #22	THBD (ENSBTAG00000048591) #23	FOXA2 (ENSBTAG00000012407) #24	PAX1 (ENSBTAG00000006742) #27	ENSBTAG00000035643	NKX2-2 (ENSBTAG00000010277) #30	NKX2-4 (ENSBTAG00000011312) #32	XRN2 (ENSBTAG00000011304) #33	KIZ (ENSBTAG00000020988) #34	RALGAPA2 (ENSBTAG00000014178) #35	CFAP61 (ENSBTAG00000009291) #37	CRNKL1 (ENSBTAG00000008472)	NAA20 (ENSBTAG00000001144)	RIN2 (ENSBTAG00000020382)	ENSBTAG00000032893	SLC24A3 (ENSBTAG00000011882)
American bison	MODERN SPECIES	2997	ENSBBBG00000022411	ACSS1 (ENSBBBG00000022438)	APMAP (ENSBBBG00000005932) #8	ENSBBBG00000022484 #7	SYNDIG1 (ENSBBBG00000022490) #9	CST3 (ENSBBBG00000005938) #12	ENSBBBG00000022502	ENSBBBG00000022506 #14	CST8 (ENSBBBG00000022516) #15	ENSBBBG00000005942	ENSBBBG00000022528 ##16	ENSBBBG00000022535 #17	CSTL1 (ENSBBBG00000022543) #18	NAPB (ENSBBBG00000022632) #19	GZF1 (ENSBBBG00000022655) #20	CD93 (ENSBBBG00000005967) #22	THBD (ENSBBBG00000022684) #23	FOXA2 (ENSBBBG00000022700) #24	PAX1 (ENSBBBG00000022763) #27	ENSBBBG00000022780	ENSBBBG00000022786 #30	XRN2 (ENSBBBG00000022814) #33	KIZ (ENSBBBG00000022908) #34	RALGAPA2 (ENSBBBG00000022984) #35	ENSBBBG00000022996 #36	CFAP61 (ENSBBBG00000006046) #37	CRNKL1 (ENSBBBG00000008793)	NAA20 (ENSBBBG00000023097)	RIN2 (ENSBBBG00000023140)	ENSBBBG00000023147	SLC24A3 (ENSBBBG00000000461)
Camelidae	ANCESTRAL SPECIES	49	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b	ENSGT00860000134050
Arabian camel	MODERN SPECIES	10	CST7 (ENSCDRG00005019480) #7	SYNDIG1 (ENSCDRG00005019502) #9	CST3 (ENSCDRG00005019511) #12	ENSCDRG00005019523	ENSCDRG00005019533	ENSCDRG00005019539	ENSCDRG00005019553 #14	CST8 (ENSCDRG00005019565) #15	ENSCDRG00005019579	ENSCDRG00005019599 ##16	ENSCDRG00005019617 #17	CSTL1 (ENSCDRG00005019624) #18	ENSCDRG00005019640 #19	GZF1 (ENSCDRG00005019674) #20	ENSCDRG00005019685 #21	CD93 (ENSCDRG00005019688) #22	ENSCDRG00005019694	FOXA2 (ENSCDRG00005019700) #24	PAX1 (ENSCDRG00005019717) #27	NKX2-2 (ENSCDRG00005019726) #30	XRN2 (ENSCDRG00005019738) #33	KIZ (ENSCDRG00005019794) #34	ENSCDRG00005020052 #35	ENSCDRG00005020129 #35	CFAP61 (ENSCDRG00005020211) #37	CRNKL1 (ENSCDRG00005020237)	NAA20 (ENSCDRG00005020249)	RIN2 (ENSCDRG00005020269)	SLC24A3 (ENSCDRG00005020283)	SCP2D1 (ENSCDRG00005020314)	DTD1 (ENSCDRG00005003474)
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Carnivora	ANCESTRAL SPECIES	20	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410 #11	ENSGT00940000154755.e.a #12	ENSGT00940000161877.n	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Caniformia	ANCESTRAL SPECIES		ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.e.a #12	ENSGT00940000161877.n	ENSGT00940000161877.m	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.e.a #12	ENSGT00940000161877.m.a	ENSGT00940000161877.n	ENSGT00940000161877.m.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Ursidae	ANCESTRAL SPECIES	14			ENSGT00940000154755.e.a #12	ENSGT00940000161877.m.a	ENSGT00940000161877.n	ENSGT00940000161877.m.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Ursus	ANCESTRAL SPECIES	191			ENSGT00940000154755.e.a #12	ENSGT00940000161877.m.a	ENSGT00940000161877.n	ENSGT00940000161877.m.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34
American black bear	MODERN SPECIES	4688																CD93 (ENSUAMG00000002525) #22	THBD (ENSUAMG00000002521) #23	SSTR4 (ENSUAMG00000002519)
Polar bear	MODERN SPECIES	300			ENSUMAG00000004197 #12	ENSUMAG00000004190	ENSUMAG00000004185	ENSUMAG00000004168	ENSUMAG00000004162 #14	CST8 (ENSUMAG00000004155) #15	ENSUMAG00000004147	ENSUMAG00000004140 ##16	CST11 (ENSUMAG00000004135) #17	CSTL1 (ENSUMAG00000004128) #18	NAPB (ENSUMAG00000004081) #19	GZF1 (ENSUMAG00000004065) #20	NXT1 (ENSUMAG00000004062) #21	CD93 (ENSUMAG00000004052) #22	SSTR4 (ENSUMAG00000004048)	PAX1 (ENSUMAG00000004035) #27	ENSUMAG00000004026 #30	XRN2 (ENSUMAG00000004012) #33	KIZ (ENSUMAG00000003912) #34	ENSUMAG00000003879 #35
Giant Panda	MODERN SPECIES	4						ENSAMEG00000030212	ENSAMEG00000009914 #14	CST8 (ENSAMEG00000009906) #15	ENSAMEG00000009904	CST11 (ENSAMEG00000009897) #17	CSTL1 (ENSAMEG00000026681) #18	NAPB (ENSAMEG00000009863) #19	GZF1 (ENSAMEG00000009853) #20	NXT1 (ENSAMEG00000018729) #21	ENSAMEG00000024065	CD93 (ENSAMEG00000009849) #22	THBD (ENSAMEG00000019083) #23	SSTR4 (ENSAMEG00000019048)	FOXA2 (ENSAMEG00000015802) #24	ENSAMEG00000031412	PAX1 (ENSAMEG00000012642) #27	NKX2-2 (ENSAMEG00000029802) #30	NKX2-4 (ENSAMEG00000030670) #32	XRN2 (ENSAMEG00000012581) #33	KIZ (ENSAMEG00000012566) #34	RALGAPA2 (ENSAMEG00000000299) #35	CFAP61 (ENSAMEG00000000288) #37	CRNKL1 (ENSAMEG00000000270)	NAA20 (ENSAMEG00000000262)	RIN2 (ENSAMEG00000000240)	SLC24A3 (ENSAMEG00000000234)
Mustelinae	ANCESTRAL SPECIES	43	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.e.a #12	ENSGT00940000161877.m.a	ENSGT00940000161877.n	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Ferret	MODERN SPECIES	204	ACSS1 (ENSMPUG00000001109)	APMAP (ENSMPUG00000001112) #8	CST7 (ENSMPUG00000001114) #7	SYNDIG1 (ENSMPUG00000001115) #9	ENSMPUG00000001119	CST3 (ENSMPUG00000001122) #12	ENSMPUG00000001137	ENSMPUG00000001138	ENSMPUG00000001140	CST8 (ENSMPUG00000001143) #15	ENSMPUG00000001151	CST11 (ENSMPUG00000001154) #17	NAPB (ENSMPUG00000001158) #19	GZF1 (ENSMPUG00000001160) #20	NXT1 (ENSMPUG00000019260) #21	CD93 (ENSMPUG00000001163) #22	THBD (ENSMPUG00000019265) #23	SSTR4 (ENSMPUG00000019271)	FOXA2 (ENSMPUG00000001166) #24	ENSMPUG00000001167	PAX1 (ENSMPUG00000001187) #27	NKX2-2 (ENSMPUG00000001196) #30	XRN2 (ENSMPUG00000001198) #33	KIZ (ENSMPUG00000001201) #34	ENSMPUG00000019274	ENSMPUG00000001204	RALGAPA2 (ENSMPUG00000001210) #35	INSM1 (ENSMPUG00000001216) #36	CFAP61 (ENSMPUG00000001219) #37	CRNKL1 (ENSMPUG00000001226)	NAA20 (ENSMPUG00000001228)
American mink	MODERN SPECIES	503													CSTL1 (ENSNVIG00000020955) #18	NAPB (ENSNVIG00000020894) #19	GZF1 (ENSNVIG00000020871) #20	CD93 (ENSNVIG00000020862) #22	THBD (ENSNVIG00000020858) #23	SSTR4 (ENSNVIG00000020855)
Canidae	ANCESTRAL SPECIES	19							ENSGT00940000157363.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046.j.a	ENSGT00940000161804.d.a	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Canis_lupus	ANCESTRAL SPECIES	13							ENSGT00940000157363.b	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT01100000263605.j	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046.j.a	ENSGT00940000161804.d.a	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Dingo	MODERN SPECIES	343							ENSCAFG00020027456 #14	CST8 (ENSCAFG00020027457) #15	ENSCAFG00020027458	CST11 (ENSCAFG00020027459) #17	CSTL1 (ENSCAFG00020027460) #18	ENSCAFG00020027461 #19	ENSCAFG00020027463 #20	ENSCAFG00020027464 #20	ENSCAFG00020027465 #21	CD93 (ENSCAFG00020027467) #22	THBD (ENSCAFG00020027468) #23	ENSCAFG00020027470	ENSCAFG00020027471	FOXA2 (ENSCAFG00020027472) #24	PAX1 (ENSCAFG00020027475) #27	NKX2-2 (ENSCAFG00020027477) #30	NKX2-4 (ENSCAFG00020027478) #32	XRN2 (ENSCAFG00020027479) #33	KIZ (ENSCAFG00020027480) #34	RALGAPA2 (ENSCAFG00020027484) #35	CFAP61 (ENSCAFG00020027486) #37	ENSCAFG00020027487	CRNKL1 (ENSCAFG00020027488)	ENSCAFG00020027489	ENSCAFG00020027490
Dog	MODERN SPECIES	16							HUS1 (ENSCAFG00845026030)	ENSCAFG00845026576	ENSCAFG00845026609 #14	CST8 (ENSCAFG00845026649) #15	ENSCAFG00845026671	CST11 (ENSCAFG00845026760) #17	CSTL1 (ENSCAFG00845026794) #18	NAPB (ENSCAFG00845026852) #19	GZF1 (ENSCAFG00845027001) #20	CD93 (ENSCAFG00845027134) #22	THBD (ENSCAFG00845027195) #23	ENSCAFG00845027219	ENSCAFG00845027242	FOXA2 (ENSCAFG00845027259) #24	PAX1 (ENSCAFG00845027290) #27	NKX2-2 (ENSCAFG00845027437) #30	NKX2-4 (ENSCAFG00845027483) #32	XRN2 (ENSCAFG00845027569) #33	KIZ (ENSCAFG00845028046) #34	RALGAPA2 (ENSCAFG00845028444) #35	CFAP61 (ENSCAFG00845028852) #37	ENSCAFG00845028933	CRNKL1 (ENSCAFG00845028961)	NAA20 (ENSCAFG00845029048)	ENSCAFG00845029111
Red fox	MODERN SPECIES	506																CD93 (ENSVVUG00000003201) #22
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000163410.k #11	ENSGT00940000154755.e.a #12	ENSGT00940000161877.n	ENSGT00940000163249 #14	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Panthera	ANCESTRAL SPECIES	2	ENSGT00950000183147.B #9	ENSGT00940000154755.e.b #12	ENSGT00940000163410.k #11	ENSGT00940000154755.e.a #12	ENSGT00940000161877.n	ENSGT00940000163249 #14	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #9	ENSGT00940000154755.e.b #12	ENSGT00940000163410.k #11	ENSGT00940000154755.e.a #12	ENSGT00940000161877.n	ENSGT00940000163249 #14	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046.k	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
leopard	MODERN SPECIES	39			SYNDIG1 (ENSPPRG00000024465) #9	ENSPPRG00000024520 #12	ENSPPRG00000016720 #12	ENSPPRG00000015946 #14	ENSPPRG00000015501	CST8 (ENSPPRG00000015009) #15	ENSPPRG00000014635	ENSPPRG00000013202 ##16	CST11 (ENSPPRG00000011764) #17	ENSPPRG00000011394	NAPB (ENSPPRG00000010805) #19	GZF1 (ENSPPRG00000010040) #20	NXT1 (ENSPPRG00000021392) #21	CD93 (ENSPPRG00000009570) #22	THBD (ENSPPRG00000021378) #23	SSTR4 (ENSPPRG00000021367)	FOXA2 (ENSPPRG00000009206) #24	PAX1 (ENSPPRG00000009070) #27	NKX2-2 (ENSPPRG00000008916) #30	NKX2-4 (ENSPPRG00000008761) #32	XRN2 (ENSPPRG00000008732) #33	KIZ (ENSPPRG00000007745) #34	RALGAPA2 (ENSPPRG00000006401) #35	INSM1 (ENSPPRG00000021271) #36	CFAP61 (ENSPPRG00000004321) #37	CRNKL1 (ENSPPRG00000001955)	ENSPPRG00000001197	ENSPPRG00000000577	SLC24A3 (ENSPPRG00000022720)
lion	MODERN SPECIES	3	CST7 (ENSPLOG00000000513) #7	ENSPLOG00000000534	SYNDIG1 (ENSPLOG00000000543) #9	ENSPLOG00000000559 #11	CST3 (ENSPLOG00000000650) #12	CST9L (ENSPLOG00000000670)	ENSPLOG00000000686 #14	CST8 (ENSPLOG00000000695) #15	ENSPLOG00000000715	ENSPLOG00000000735 ##16	CST11 (ENSPLOG00000000758) #17	CSTL1 (ENSPLOG00000000776) #18	NAPB (ENSPLOG00000000809) #19	GZF1 (ENSPLOG00000000839) #20	NXT1 (ENSPLOG00000000844) #21	CD93 (ENSPLOG00000000855) #22	THBD (ENSPLOG00000000869) #23	SSTR4 (ENSPLOG00000000946)	FOXA2 (ENSPLOG00000000959) #24	PAX1 (ENSPLOG00000000971) #27	NKX2-2 (ENSPLOG00000000985) #30	NKX2-4 (ENSPLOG00000001002) #32	XRN2 (ENSPLOG00000001042) #33	KIZ (ENSPLOG00000001155) #34	RALGAPA2 (ENSPLOG00000001266) #35	INSM1 (ENSPLOG00000001312) #36	CFAP61 (ENSPLOG00000001356) #37	CRNKL1 (ENSPLOG00000001416)	NAA20 (ENSPLOG00000001447)	RIN2 (ENSPLOG00000001490)	SLC24A3 (ENSPLOG00000001538)
Tiger	MODERN SPECIES	535	APMAP (ENSPTIG00000009330) #8	CST7 (ENSPTIG00000009188) #7	SYNDIG1 (ENSPTIG00000008709) #9	ENSPTIG00000007645 #11	ENSPTIG00000007325 #11	CST9L (ENSPTIG00000007266)	ENSPTIG00000007155 #14	CST8 (ENSPTIG00000006377) #15	ENSPTIG00000005641	ENSPTIG00000005550 ##16	CST11 (ENSPTIG00000003091) #17	ENSPTIG00000001355	NAPB (ENSPTIG00000019947) #19	GZF1 (ENSPTIG00000019328) #20	NXT1 (ENSPTIG00000003788) #21	CD93 (ENSPTIG00000018580) #22	SSTR4 (ENSPTIG00000003769)	PAX1 (ENSPTIG00000017141) #27	NKX2-2 (ENSPTIG00000016807) #30	XRN2 (ENSPTIG00000015683) #33	KIZ (ENSPTIG00000015123) #34	RALGAPA2 (ENSPTIG00000012682) #35	CFAP61 (ENSPTIG00000009217) #37	CRNKL1 (ENSPTIG00000007393)	NAA20 (ENSPTIG00000006328)	RIN2 (ENSPTIG00000003100)	SLC24A3 (ENSPTIG00000021465)	SCP2D1 (ENSPTIG00000002789)	DTD1 (ENSPTIG00000020971)	SEC23B (ENSPTIG00000020593)	RBBP9 (ENSPTIG00000020464)
Cat	MODERN SPECIES	2	CST7 (ENSFCAG00000014543) #7	SYNDIG1 (ENSFCAG00000033652) #9	ENSFCAG00000035754 #11	CST3 (ENSFCAG00000038525) #12	ENSFCAG00000030881	ENSFCAG00000027887 #14	ENSFCAG00000023071	CST8 (ENSFCAG00000023255) #15	ENSFCAG00000042989	ENSFCAG00000026179 ##16	CST11 (ENSFCAG00000003949) #17	CSTL1 (ENSFCAG00000041684) #18	NAPB (ENSFCAG00000037279) #19	GZF1 (ENSFCAG00000006484) #20	NXT1 (ENSFCAG00000006482) #21	CD93 (ENSFCAG00000025238) #22	THBD (ENSFCAG00000011513) #23	SSTR4 (ENSFCAG00000022777)	FOXA2 (ENSFCAG00000012368) #24	PAX1 (ENSFCAG00000004293) #27	NKX2-2 (ENSFCAG00000008740) #30	NKX2-4 (ENSFCAG00000045261) #32	XRN2 (ENSFCAG00000007970) #33	KIZ (ENSFCAG00000007966) #34	RALGAPA2 (ENSFCAG00000028385) #35	INSM1 (ENSFCAG00000040680) #36	CFAP61 (ENSFCAG00000000715) #37	CRNKL1 (ENSFCAG00000000714)	NAA20 (ENSFCAG00000028113)	RIN2 (ENSFCAG00000014527)	SLC24A3 (ENSFCAG00000008015)
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Equus	ANCESTRAL SPECIES	8	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00510000047812.l	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Horse	MODERN SPECIES	14	ACSS1 (ENSECAG00000023870)	APMAP (ENSECAG00000014524) #8	CST7 (ENSECAG00000000268) #7	ENSECAG00000050617	SYNDIG1 (ENSECAG00000006421) #9	CST3 (ENSECAG00000038893) #12	ENSECAG00000045045 #14	CST9L (ENSECAG00000010654)	CST8 (ENSECAG00000029932) #15	ENSECAG00000014988 ##16	CST11 (ENSECAG00000016342) #17	CSTL1 (ENSECAG00000019672) #18	NAPB (ENSECAG00000022016) #19	GZF1 (ENSECAG00000011343) #20	NXT1 (ENSECAG00000035032) #21	CD93 (ENSECAG00000016324) #22	THBD (ENSECAG00000005241) #23	FOXA2 (ENSECAG00000032004) #24	PAX1 (ENSECAG00000016945) #27	NKX2-2 (ENSECAG00000018977) #30	NKX2-4 (ENSECAG00000037105) #32	XRN2 (ENSECAG00000018988) #33	KIZ (ENSECAG00000016626) #34	ENSECAG00000036437	RALGAPA2 (ENSECAG00000019950) #35	INSM1 (ENSECAG00000037552) #36	CFAP61 (ENSECAG00000004364) #37	CRNKL1 (ENSECAG00000022215)	NAA20 (ENSECAG00000012609)	RIN2 (ENSECAG00000015381)	SLC24A3 (ENSECAG00000019334)
Donkey	MODERN SPECIES	6	ENSEASG00005030814	ACSS1 (ENSEASG00005002623)	APMAP (ENSEASG00005002617) #8	CST7 (ENSEASG00005029197) #7	ENSEASG00005002614 #9	ENSEASG00005002598 #12	ENSEASG00005027176	ENSEASG00005025391 #14	CST8 (ENSEASG00005030555) #15	ENSEASG00005031840	CST11 (ENSEASG00005002576) #17	CSTL1 (ENSEASG00005002572) #18	NAPB (ENSEASG00005002564) #19	GZF1 (ENSEASG00005002557) #20	NXT1 (ENSEASG00005033641) #21	CD93 (ENSEASG00005002547) #22	THBD (ENSEASG00005027531) #23	SSTR4 (ENSEASG00005002540)	FOXA2 (ENSEASG00005002535) #24	PAX1 (ENSEASG00005002521) #27	NKX2-2 (ENSEASG00005038540) #30	NKX2-4 (ENSEASG00005002501) #32	XRN2 (ENSEASG00005002484) #33	KIZ (ENSEASG00005002467) #34	ENSEASG00005002454	RALGAPA2 (ENSEASG00005002224) #35	INSM1 (ENSEASG00005002118) #36	CFAP61 (ENSEASG00005002079) #37	CRNKL1 (ENSEASG00005002072)	NAA20 (ENSEASG00005002069)	RIN2 (ENSEASG00005002067)
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000165454	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Greater horseshoe bat	MODERN SPECIES	15	ENTPD6 (ENSRFEG00010011594)	ENSRFEG00010011488	ABHD12 (ENSRFEG00010011429)	GINS1 (ENSRFEG00010011337)	NINL (ENSRFEG00010011279)	NANP (ENSRFEG00010011232)	CST3 (ENSRFEG00010011121) #12	CST9L (ENSRFEG00010011055)	ENSRFEG00010011001 #14	ENSRFEG00010010952	CST11 (ENSRFEG00010010901) #17	CSTL1 (ENSRFEG00010010843) #18	NAPB (ENSRFEG00010010719) #19	GZF1 (ENSRFEG00010010618) #20	NXT1 (ENSRFEG00010010600) #21	CD93 (ENSRFEG00010010553) #22	THBD (ENSRFEG00010010533) #23	ENSRFEG00010010499	ENSRFEG00010010431	FOXA2 (ENSRFEG00010010354) #24	ENSRFEG00010010271	PAX1 (ENSRFEG00010010205) #27	NKX2-2 (ENSRFEG00010010185) #30	NKX2-4 (ENSRFEG00010010146) #32	XRN2 (ENSRFEG00010010058) #33	ENSRFEG00010010021	KIZ (ENSRFEG00010009832) #34	ENSRFEG00010009788	RALGAPA2 (ENSRFEG00010009655) #35	INSM1 (ENSRFEG00010009617) #36	CFAP61 (ENSRFEG00010009533) #37
Microbat	MODERN SPECIES	1151	CST7 (ENSMLUG00000004912) #7	SYNDIG1 (ENSMLUG00000012716) #9	ENSMLUG00000011668	ENSMLUG00000026533	ENSMLUG00000010298	CST3 (ENSMLUG00000028312) #12	ENSMLUG00000007975	ENSMLUG00000024267 #14	CST8 (ENSMLUG00000002227) #15	ENSMLUG00000028493	CST11 (ENSMLUG00000002218) #17	CSTL1 (ENSMLUG00000002210) #18	NAPB (ENSMLUG00000002203) #19	GZF1 (ENSMLUG00000002194) #20	NXT1 (ENSMLUG00000006881) #21	CD93 (ENSMLUG00000011185) #22	THBD (ENSMLUG00000011192) #23	FOXA2 (ENSMLUG00000025149) #24
Megabat	MODERN SPECIES	6108																CD93 (ENSPVAG00000003132) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156996 #22
Common shrew	MODERN SPECIES	8163																CD93 (ENSSARG00000002968) #22
Atlantogenata	ANCESTRAL SPECIES	6	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.l #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Xenarthra	ANCESTRAL SPECIES	526										ENSGT00940000162636.B ##16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.l #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a
Armadillo	MODERN SPECIES	3602							ENSDNOG00000031973	ENSDNOG00000031415 ##16	CST11 (ENSDNOG00000018232) #17	CSTL1 (ENSDNOG00000001781) #18	NAPB (ENSDNOG00000047292) #19	GZF1 (ENSDNOG00000014290) #20	ENSDNOG00000040022 #21	NXT1 (ENSDNOG00000015112) #21	ENSDNOG00000044722	CD93 (ENSDNOG00000001591) #22	THBD (ENSDNOG00000015285) #23	SSTR4 (ENSDNOG00000038307)	ENSDNOG00000046682	FOXA2 (ENSDNOG00000006385) #24	ENSDNOG00000032532
Sloth	MODERN SPECIES	8365																ENSCHOG00000011843 #22
Afrotheria	ANCESTRAL SPECIES	3	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.l #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Afrotheria_a	ANCESTRAL SPECIES	3	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755 #12	ENSGT00940000161877	ENSGT00940000163249 #14	ENSGT00940000162294 #15	ENSGT00940000162636.A #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.l #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Elephant	MODERN SPECIES	180	VSX1 (ENSLAFG00000018392)	ACSS1 (ENSLAFG00000011493)	APMAP (ENSLAFG00000011820) #8	CST7 (ENSLAFG00000022218) #7	SYNDIG1 (ENSLAFG00000013030) #9	CST3 (ENSLAFG00000015020) #12	ENSLAFG00000002805	ENSLAFG00000006741 #14	CST8 (ENSLAFG00000002803) #15	ENSLAFG00000030756 #16	ENSLAFG00000008240 #17	CSTL1 (ENSLAFG00000008243) #18	NAPB (ENSLAFG00000002461) #19	GZF1 (ENSLAFG00000002458) #20	NXT1 (ENSLAFG00000029098) #21	CD93 (ENSLAFG00000027545) #22	THBD (ENSLAFG00000012832) #23	ENSLAFG00000032254	FOXA2 (ENSLAFG00000026345) #24	ENSLAFG00000031871	PAX1 (ENSLAFG00000008908) #27	NKX2-2 (ENSLAFG00000002379) #30	ENSLAFG00000014638 #32	XRN2 (ENSLAFG00000014624) #33	KIZ (ENSLAFG00000002389) #34	ENSLAFG00000032497 #35	ENSLAFG00000011596 #35	INSM1 (ENSLAFG00000011594) #36	ENSLAFG00000029531	ENSLAFG00000028424 #37	ENSLAFG00000004520 #37
Hyrax	MODERN SPECIES	8469																CD93 (ENSPCAG00000003989) #22
Tenrec	MODERN SPECIES	10186																CD93 (ENSETEG00000008394) #22
Marsupialia	ANCESTRAL SPECIES	19	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.b #12	ENSGT00940000163249 #14	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00390000004987 #37	ENSGT00550000074931.g	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.b #12	ENSGT00940000163249 #14	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931.g	ENSGT00550000075046	ENSGT00940000154866.B
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.b #12	ENSGT00940000163249 #14	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931.g	ENSGT00550000075046	ENSGT00940000154866.B
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a #8	ENSGT00940000160277 #7	ENSGT00950000183147.B #9	ENSGT00940000154755.b #12	ENSGT00940000163249 #14	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a	ENSGT00940000155999 #24	ENSGT00940000159137 #27	ENSGT00940000159727 #30	ENSGT00940000162247 #32	ENSGT00670000098098 #33	ENSGT00390000010121 #34	ENSGT00950000183139.A #35	ENSGT00940000162552 #36	ENSGT00940000167996	ENSGT00390000004987 #37	ENSGT00550000074931.g	ENSGT00550000075046	ENSGT00940000154866.B
koala	MODERN SPECIES	1	ENSPCIG00000033046	ENSPCIG00000025179	VSX1 (ENSPCIG00000025170)	ACSS1 (ENSPCIG00000025166)	APMAP (ENSPCIG00000025164) #8	CST7 (ENSPCIG00000035164) #7	SYNDIG1 (ENSPCIG00000008651) #9	ENSPCIG00000008654	ENSPCIG00000036306 #12	ENSPCIG00000013810 #14	ENSPCIG00000013809	NAPB (ENSPCIG00000013805) #19	ENSPCIG00000031294 #20	ENSPCIG00000013803 #20	ENSPCIG00000013801	CD93 (ENSPCIG00000015492) #22	ENSPCIG00000015494	SSTR4 (ENSPCIG00000015498)	FOXA2 (ENSPCIG00000025918) #24	PAX1 (ENSPCIG00000031385) #27	NKX2-2 (ENSPCIG00000034162) #30	ENSPCIG00000031596	NKX2-4 (ENSPCIG00000024538) #32	XRN2 (ENSPCIG00000001237) #33	ENSPCIG00000001346 #35	ENSPCIG00000008868 #35	INSM1 (ENSPCIG00000025810) #36	ENSPCIG00000034193	CFAP61 (ENSPCIG00000025813) #37	CRNKL1 (ENSPCIG00000025825)	NAA20 (ENSPCIG00000025955)
Common wonbat	MODERN SPECIES	1073																CD93 (ENSVURG00010005436) #22	THBD (ENSVURG00010005445) #23	SSTR4 (ENSVURG00010005456)	FOXA2 (ENSVURG00010005464) #24	PAX1 (ENSVURG00010005488) #27	NKX2-2 (ENSVURG00010005501) #30	NKX2-4 (ENSVURG00010005513) #32	XRN2 (ENSVURG00010005531) #33	KIZ (ENSVURG00010005599) #34	ENSVURG00010005678	RALGAPA2 (ENSVURG00010005756) #35	INSM1 (ENSVURG00010005820) #36	ENSVURG00010005834	ENSVURG00010005838	ENSVURG00010005844 #37	ENSVURG00010005874 #37
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000017247	GINS1 (ENSSHAG00000017422)	ABHD12 (ENSSHAG00000017466)	PYGB (ENSSHAG00000017620)	ENTPD6 (ENSSHAG00000017761)	VSX1 (ENSSHAG00000027598)	ENSSHAG00000031963	ACSS1 (ENSSHAG00000004290)	APMAP (ENSSHAG00000002616) #8	ENSSHAG00000000722 #7	SYNDIG1 (ENSSHAG00000026100) #9	ENSSHAG00000032132 #12	ENSSHAG00000031598 #12	NAPB (ENSSHAG00000022875) #19	ENSSHAG00000009367 #20	CD93 (ENSSHAG00000031195) #22	THBD (ENSSHAG00000028423) #23	SSTR4 (ENSSHAG00000012685)	FOXA2 (ENSSHAG00000014905) #24	PAX1 (ENSSHAG00000017556) #27	NKX2-2 (ENSSHAG00000004915) #30	NKX2-4 (ENSSHAG00000024664) #32	XRN2 (ENSSHAG00000023603) #33	KIZ (ENSSHAG00000027601) #34	RALGAPA2 (ENSSHAG00000011234) #35	CFAP61 (ENSSHAG00000013786) #37	ENSSHAG00000030457	ENSSHAG00000022346	ENSSHAG00000027541	ENSSHAG00000025214	RIN2 (ENSSHAG00000014834)
Opossum	MODERN SPECIES		ENSMODG00000006490	ENSMODG00000006443	ABHD12 (ENSMODG00000006439)	PYGB (ENSMODG00000006424)	ENTPD6 (ENSMODG00000006375)	VSX1 (ENSMODG00000006351)	ACSS1 (ENSMODG00000006345)	APMAP (ENSMODG00000006313) #8	ENSMODG00000006300 #7	ENSMODG00000044809	SYNDIG1 (ENSMODG00000006293) #9	ENSMODG00000048042 #12	NAPB (ENSMODG00000006277) #19	GZF1 (ENSMODG00000006238) #20	ENSMODG00000044175 #20	CD93 (ENSMODG00000006221) #22	ENSMODG00000023139 #23	SSTR4 (ENSMODG00000023138)	FOXA2 (ENSMODG00000006213) #24	PAX1 (ENSMODG00000006198) #27	NKX2-2 (ENSMODG00000006177) #30	NKX2-4 (ENSMODG00000006170) #32	XRN2 (ENSMODG00000006163) #33	ENSMODG00000040034	KIZ (ENSMODG00000006125) #34	ENSMODG00000006089 #35	ENSMODG00000036552	ENSMODG00000050875	ENSMODG00000043419 #35	INSM1 (ENSMODG00000006031) #36	CFAP61 (ENSMODG00000005981) #37
Platypus	MODERN SPECIES		ENSOANG00000010714	ENSOANG00000039008	ENSOANG00000002187	KCNS3 (ENSOANG00000014360)	RDH14 (ENSOANG00000049985)	NT5C1B (ENSOANG00000007019)	OSR1 (ENSOANG00000045764)	ENSOANG00000007840	CST7 (ENSOANG00000042962) #7	SYNDIG1 (ENSOANG00000010870) #9	ENSOANG00000051113 #12	NAPB (ENSOANG00000000251) #19	ENSOANG00000045902	GZF1 (ENSOANG00000038746) #20	ENSOANG00000022376 #20	ENSOANG00000041257 #22	ENSOANG00000015171	SSTR4 (ENSOANG00000037977)	FOXA2 (ENSOANG00000015108) #24	PAX1 (ENSOANG00000002008) #27	ENSOANG00000047729 #30	NKX2-4 (ENSOANG00000048651) #32	XRN2 (ENSOANG00000015673) #33	ENSOANG00000002851 #34	RALGAPA2 (ENSOANG00000002499) #35	INSM1 (ENSOANG00000038669) #36	CFAP61 (ENSOANG00000046492) #37	CRNKL1 (ENSOANG00000031667)	NAA20 (ENSOANG00000036301)	RIN2 (ENSOANG00000002281)	SLC24A3 (ENSOANG00000015699)