Cryptodira	ANCESTRAL SPECIES	31					ENSGT00940000157554	ENSGT00390000018883 #11	ENSGT00950000182962.b.a #13	ENSGT01060000248564.b.a.a.a #14	ENSGT00530000063929.a.b #15	ENSGT00940000157531.k #16	ENSGT00940000159398 #17	ENSGT00940000160932 #18	ENSGT00940000154868.a.b #19	ENSGT00390000007371 #20	ENSGT00950000182900.B #21	ENSGT00940000156338 #22	ENSGT00940000160747 #23	ENSGT00390000017418 #24	ENSGT00390000016565 #25	ENSGT00940000155361 #26	ENSGT00390000015719.c #27	ENSGT00390000004191 #28	ENSGT00950000183172.B #29	ENSGT01090000260040.b.b.b.a #31	ENSGT00940000156585 #32	ENSGT00390000013174 #33	ENSGT00940000155194 #34	ENSGT00940000159314 #35	ENSGT00950000182802.B #36	ENSGT00390000007879 #37	ENSGT00940000153295.a
Testudinoidea	ANCESTRAL SPECIES	27					ENSGT00940000157554	ENSGT00390000018883 #11	ENSGT00950000182962.b.a #13	ENSGT01060000248564.b.a.a.a #14	ENSGT00530000063929.a.b #15	ENSGT00940000157531.k #16	ENSGT00940000159398 #17	ENSGT00940000160932 #18	ENSGT00940000154868.a.b #19	ENSGT00390000007371 #20	ENSGT00950000182900.B #21	ENSGT00940000156338 #22	ENSGT00940000160747 #23	ENSGT00390000017418 #24	ENSGT00390000016565 #25	ENSGT00940000155361 #26	ENSGT00390000015719.c #27	ENSGT00390000004191 #28	ENSGT00950000183172.B #29	ENSGT01090000260040.b.b.b.a #31	ENSGT00940000156585 #32	ENSGT00390000013174 #33	ENSGT00940000155194 #34	ENSGT00940000159314 #35	ENSGT00950000182802.B #36	ENSGT00390000007879 #37	ENSGT00940000153295.a
Emydidae	ANCESTRAL SPECIES	39							ENSGT00950000182962.b.a #13	ENSGT01060000248564.b.a.a.a #14	ENSGT00530000063929.a.b #15	ENSGT00940000157531.k #16	ENSGT00940000159398 #17	ENSGT00940000160932 #18	ENSGT00940000154868.a.b #19	ENSGT00390000007371 #20	ENSGT00950000182900.B #21	ENSGT00940000156338 #22	ENSGT00940000160747 #23	ENSGT00390000017418 #24	ENSGT00390000016565 #25	ENSGT00940000155361 #26	ENSGT00390000015719.c #27	ENSGT00390000004191 #28	ENSGT00950000183172.B #29	ENSGT01090000260040.b.b.b.a #31	ENSGT00940000156585 #32	ENSGT00390000013174 #33	ENSGT00940000155194 #34	ENSGT00940000159314 #35	ENSGT00950000182802.B #36	ENSGT00390000007879 #37	ENSGT00940000153295.a
Three-toed box turtle	MODERN SPECIES	111	ENSTMTG00000012689 #7	ENSTMTG00000012703 #8	ENSTMTG00000012717 #9	ENSTMTG00000012746 #10	AHDC1 (ENSTMTG00000012770) #11	ENSTMTG00000012779 #12	WASF2 (ENSTMTG00000012789) #13	GPR3 (ENSTMTG00000012809) #14	CD164L2 (ENSTMTG00000012818) #15	ENSTMTG00000012835 #16	MAP3K6 (ENSTMTG00000012859) #17	SYTL1 (ENSTMTG00000012905) #18	ENSTMTG00000012936 #19	TMEM222 (ENSTMTG00000012958) #20	WDTC1 (ENSTMTG00000010408) #21	SLC9A1 (ENSTMTG00000010422) #22	TENT5B (ENSTMTG00000010434) #23	TRNP1 (ENSTMTG00000010438) #24	KDF1 (ENSTMTG00000010454) #25	NUDC (ENSTMTG00000010465) #26	NR0B2 (ENSTMTG00000010483) #27	GPATCH3 (ENSTMTG00000010492) #28	GPN2 (ENSTMTG00000010508) #29	ENSTMTG00000010529 #30	SFN (ENSTMTG00000010580) #31	ZDHHC18 (ENSTMTG00000010602) #32	PIGV (ENSTMTG00000010620) #33	ARID1A (ENSTMTG00000010637) #34	RPS6KA1 (ENSTMTG00000010867) #35	ENSTMTG00000012122 #36	DHDDS (ENSTMTG00000012136) #37
painted turtle	MODERN SPECIES	757	ENSCPBG00000024868 #7	ENSCPBG00000024872 #8	ENSCPBG00000024874 #9	ENSCPBG00000024875 #10	AHDC1 (ENSCPBG00000024880) #11	ENSCPBG00000024883 #12	WASF2 (ENSCPBG00000024887) #13	GPR3 (ENSCPBG00000024890) #14	CD164L2 (ENSCPBG00000024894) #15	ENSCPBG00000024896 #16	MAP3K6 (ENSCPBG00000024904) #17	SYTL1 (ENSCPBG00000024928) #18	ENSCPBG00000024939 #19	TMEM222 (ENSCPBG00000024943) #20	WDTC1 (ENSCPBG00000024946) #21	SLC9A1 (ENSCPBG00000024951) #22	TENT5B (ENSCPBG00000024956) #23	TRNP1 (ENSCPBG00000024958) #24	KDF1 (ENSCPBG00000024960) #25	NUDC (ENSCPBG00000024964) #26	NR0B2 (ENSCPBG00000024966) #27	GPATCH3 (ENSCPBG00000024968) #28	GPN2 (ENSCPBG00000024969) #29	ENSCPBG00000024973 #30	SFN (ENSCPBG00000024974) #31	ZDHHC18 (ENSCPBG00000024975) #32	PIGV (ENSCPBG00000024976) #33	ARID1A (ENSCPBG00000024979) #34	RPS6KA1 (ENSCPBG00000024989) #35	ENSCPBG00000025004 #36	DHDDS (ENSCPBG00000025006) #37
Testudinidae	ANCESTRAL SPECIES	53	ENSGT00940000163282.j	ENSGT00940000163923.e.c #7	ENSGT00940000163923.e.d #8	ENSGT00940000163923.f #9	ENSGT00940000157554	ENSGT00390000018883 #11	ENSGT00950000182962.b.a #13	ENSGT01060000248564.b.a.a.a #14	ENSGT00530000063929.a.b #15	ENSGT00940000157531.k #16	ENSGT00940000159398 #17	ENSGT00940000160932 #18	ENSGT00940000154868.a.b #19	ENSGT00390000007371 #20	ENSGT00950000182900.B #21	ENSGT00940000156338 #22	ENSGT00940000160747 #23	ENSGT00390000017418 #24	ENSGT00390000016565 #25	ENSGT00940000155361 #26	ENSGT00390000015719.c #27	ENSGT00390000004191 #28	ENSGT00950000183172.B #29
Abingdon island giant tortoise	MODERN SPECIES	2225	ENSCABG00000009827	ENSCABG00000009828 #7	ENSCABG00000009830 #9	ENSCABG00000009835	FGR (ENSCABG00000009837)	AHDC1 (ENSCABG00000009842) #11	WASF2 (ENSCABG00000009843) #13	GPR3 (ENSCABG00000009844) #14	ENSCABG00000009846	ENSCABG00000009847 #16	MAP3K6 (ENSCABG00000009850) #17	SYTL1 (ENSCABG00000009852) #18	ENSCABG00000009853 #19	TMEM222 (ENSCABG00000009856) #20	WDTC1 (ENSCABG00000009862) #21	SLC9A1 (ENSCABG00000009864) #22	TENT5B (ENSCABG00000009867) #23	KDF1 (ENSCABG00000009869) #25	NUDC (ENSCABG00000009873) #26	NR0B2 (ENSCABG00000009874) #27	GPATCH3 (ENSCABG00000009876) #28	GPN2 (ENSCABG00000009877) #29	ENSCABG00000009880 #30	SFN (ENSCABG00000009891) #31	ZDHHC18 (ENSCABG00000009894) #32	PIGV (ENSCABG00000009900) #33	ARID1A (ENSCABG00000009903) #34	RPS6KA1 (ENSCABG00000009917) #35	ENSCABG00000010538 #36	DHDDS (ENSCABG00000010539) #37	LIN28A (ENSCABG00000010540)
Goode s thornscrub tortoise	MODERN SPECIES	12	ENSGEVG00005004911	ENSGEVG00005004831 #7	ENSGEVG00005004770 #8	ENSGEVG00005004746 #9	FGR (ENSGEVG00005004709)	AHDC1 (ENSGEVG00005004682) #11	WASF2 (ENSGEVG00005004635) #13	GPR3 (ENSGEVG00005004575) #14	CD164L2 (ENSGEVG00005004553) #15	ENSGEVG00005004509 #16	MAP3K6 (ENSGEVG00005004395) #17	SYTL1 (ENSGEVG00005004336) #18	ENSGEVG00005004298 #19	TMEM222 (ENSGEVG00005021265) #20	WDTC1 (ENSGEVG00005021264) #21	SLC9A1 (ENSGEVG00005021263) #22	TENT5B (ENSGEVG00005021262) #23	TRNP1 (ENSGEVG00005021261) #24	KDF1 (ENSGEVG00005021260) #25	NUDC (ENSGEVG00005021259) #26	NR0B2 (ENSGEVG00005021258) #27	GPATCH3 (ENSGEVG00005021257) #28	GPN2 (ENSGEVG00005021256) #29	ENSGEVG00005021255 #30	ZDHHC18 (ENSGEVG00005021254) #32	PIGV (ENSGEVG00005021252) #33	ARID1A (ENSGEVG00005021251) #34	RPS6KA1 (ENSGEVG00005021250) #35	ENSGEVG00005021249	ENSGEVG00005021248 #36	DHDDS (ENSGEVG00005021247) #37
Chinese turtle	MODERN SPECIES	1959										ENSPSIG00000003572 #17	SYTL1 (ENSPSIG00000003581) #18	ENSPSIG00000003708	TMEM222 (ENSPSIG00000003749) #20	ENSPSIG00000003776	WDTC1 (ENSPSIG00000003794) #21	SLC9A1 (ENSPSIG00000003949) #22	TENT5B (ENSPSIG00000000566) #23	KDF1 (ENSPSIG00000004091) #25	RHBDL2 (ENSPSIG00000004115)	GJA9 (ENSPSIG00000000575)	RRAGC (ENSPSIG00000004140)	ENSPSIG00000000580	UTP11 (ENSPSIG00000004184)	FHL3 (ENSPSIG00000004237)	SF3A3 (ENSPSIG00000004273)	INPP5B (ENSPSIG00000005118)	MTF1 (ENSPSIG00000005687)	YRDC (ENSPSIG00000006483)	MANEAL (ENSPSIG00000006656)	ENSPSIG00000006661	CDCA8 (ENSPSIG00000007288)