Murinae	ANCESTRAL SPECIES	5	ENSGT00900000141033.b.b.u #7	ENSGT00940000156698 #9	ENSGT00390000015248 #10	ENSGT00530000064067 #11	ENSGT00390000016256 #12	ENSGT00940000159088 #13	ENSGT00940000160132 #14	ENSGT00510000047412.a #15	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #36	ENSGT00950000183076.a.b.b.a.b #37	ENSGT00730000111346	ENSGT00390000007227.a
Mus	ANCESTRAL SPECIES	7	ENSGT00900000141033.b.b.v #8	ENSGT00940000156698 #9	ENSGT00390000015248 #10	ENSGT00530000064067 #11	ENSGT00390000016256 #12	ENSGT00940000159088 #13	ENSGT00940000160132 #14	ENSGT00510000047412.a #15	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b #34	ENSGT00950000182844.b.b.a.a #35	ENSGT00940000159463 #36	ENSGT00950000183076.a.b.b.a.b #37	ENSGT00730000111346
Shrew mouse	MODERN SPECIES	17	Rusc1 (MGP_PahariEiJ_G0026629) #7	MGP_PahariEiJ_G0026628 #8	Ash1l (MGP_PahariEiJ_G0026627) #9	Dap3 (MGP_PahariEiJ_G0026626) #10	MGP_PahariEiJ_G0026625 #11	Gon4l (MGP_PahariEiJ_G0026624) #12	Syt11 (MGP_PahariEiJ_G0026623) #13	Rit1 (MGP_PahariEiJ_G0026622) #14	Khdc4 (MGP_PahariEiJ_G0026621) #15	Arhgef2 (MGP_PahariEiJ_G0026620) #16	Ssr2 (MGP_PahariEiJ_G0026619) #17	Ubqln4 (MGP_PahariEiJ_G0026618) #18	Lamtor2 (MGP_PahariEiJ_G0026617) #19	Rab25 (MGP_PahariEiJ_G0026616) #20	Mex3a (MGP_PahariEiJ_G0026615) #21	Lmna (MGP_PahariEiJ_G0026614) #22	Sema4a (MGP_PahariEiJ_G0026613) #23	Slc25a44 (MGP_PahariEiJ_G0026612) #24	Pmf1 (MGP_PahariEiJ_G0026611) #25	MGP_PahariEiJ_G0026609 #26	MGP_PahariEiJ_G0026610 #27	Paqr6 (MGP_PahariEiJ_G0026607) #28	Smg5 (MGP_PahariEiJ_G0026606) #29	Tmem79 (MGP_PahariEiJ_G0026605) #30	Glmp (MGP_PahariEiJ_G0026604) #31	MGP_PahariEiJ_G0026603 #32	Tsacc (MGP_PahariEiJ_G0026602) #33	MGP_PahariEiJ_G0026601 #34	Rhbg (MGP_PahariEiJ_G0026600) #35	Mef2d (MGP_PahariEiJ_G0026599) #36	Iqgap3 (MGP_PahariEiJ_G0026598) #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00900000141033.b.b.v #8	ENSGT00940000156698 #9	ENSGT00390000015248 #10	ENSGT00530000064067 #11	ENSGT00390000016256 #12	ENSGT00940000159088 #13	ENSGT00940000160132 #14	ENSGT00510000047412.a #15	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.e #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b #34	ENSGT00950000182844.b.b.a.a #35	ENSGT00940000159463 #36	ENSGT00950000183076.a.b.b.a.b #37	ENSGT00730000111346
Mus_B	ANCESTRAL SPECIES	8	ENSGT00900000141033.b.b.v #8	ENSGT00940000156698 #9	ENSGT00390000015248 #10	ENSGT00530000064067 #11	ENSGT00390000016256 #12	ENSGT00940000159088 #13	ENSGT00940000160132 #14	ENSGT00510000047412.a #15	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.e #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b #34	ENSGT00950000182844.b.b.a.a #35	ENSGT00940000159463 #36	ENSGT00950000183076.a.b.b.a.b #37	ENSGT00730000111346
Mouse	MODERN SPECIES	12	Rusc1 (ENSMUSG00000041263) #7	Ash1l (ENSMUSG00000028053) #9	Dap3 (ENSMUSG00000068921) #10	Msto1 (ENSMUSG00000068922) #11	Gon4l (ENSMUSG00000054199) #12	Syt11 (ENSMUSG00000068923) #13	Rit1 (ENSMUSG00000028057) #14	Khdc4 (ENSMUSG00000028060) #15	Rxfp4 (ENSMUSG00000049741)	Arhgef2 (ENSMUSG00000028059) #16	Ssr2 (ENSMUSG00000041355) #17	Ubqln4 (ENSMUSG00000008604) #18	Lamtor2 (ENSMUSG00000028062) #19	Rab25 (ENSMUSG00000008601) #20	Mex3a (ENSMUSG00000074480) #21	Lmna (ENSMUSG00000028063) #22	Sema4a (ENSMUSG00000028064) #23	Slc25a44 (ENSMUSG00000050144) #24	Pmf1 (ENSMUSG00000028066) #25	Bglap (ENSMUSG00000074483) #26	Bglap2 (ENSMUSG00000074486) #26	Bglap3 (ENSMUSG00000074489) #26	Paqr6 (ENSMUSG00000041423) #28	Smg5 (ENSMUSG00000001415) #29	Tmem79 (ENSMUSG00000001420) #30	Glmp (ENSMUSG00000001418) #31	Cct3 (ENSMUSG00000001416) #32	Tsacc (ENSMUSG00000010538) #33	Gm38392 (ENSMUSG00000103766)	Rhbg (ENSMUSG00000104445) #35	Mef2d (ENSMUSG00000001419) #36
Mus_C	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b.v #8	ENSGT00940000156698 #9	ENSGT00390000015248 #10	ENSGT00530000064067 #11	ENSGT00390000016256 #12	ENSGT00940000159088 #13	ENSGT00940000160132 #14	ENSGT00510000047412.a #15	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.e #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b #34	ENSGT00950000182844.b.b.a.a #35	ENSGT00940000159463 #36	ENSGT00950000183076.a.b.b.a.b #37	ENSGT00730000111346
spretus	MODERN SPECIES	12	MGP_SPRETEiJ_G0026127 #8	Ash1l (MGP_SPRETEiJ_G0026126) #9	Dap3 (MGP_SPRETEiJ_G0026125) #10	Msto1 (MGP_SPRETEiJ_G0026124) #11	Gon4l (MGP_SPRETEiJ_G0026123) #12	Syt11 (MGP_SPRETEiJ_G0026122) #13	Rit1 (MGP_SPRETEiJ_G0026121) #14	Khdc4 (MGP_SPRETEiJ_G0026120) #15	Rxfp4 (MGP_SPRETEiJ_G0026119)	Arhgef2 (MGP_SPRETEiJ_G0026118) #16	Ssr2 (MGP_SPRETEiJ_G0026117) #17	Ubqln4 (MGP_SPRETEiJ_G0026116) #18	Lamtor2 (MGP_SPRETEiJ_G0026115) #19	Rab25 (MGP_SPRETEiJ_G0026114) #20	MGP_SPRETEiJ_G0026113 #21	Lmna (MGP_SPRETEiJ_G0026112) #22	Sema4a (MGP_SPRETEiJ_G0026111) #23	Slc25a44 (MGP_SPRETEiJ_G0026110) #24	Pmf1 (MGP_SPRETEiJ_G0026109) #25	MGP_SPRETEiJ_G0026107 #26	MGP_SPRETEiJ_G0026108 #26	MGP_SPRETEiJ_G0026106 #26	Paqr6 (MGP_SPRETEiJ_G0026105) #28	Smg5 (MGP_SPRETEiJ_G0026104) #29	Tmem79 (MGP_SPRETEiJ_G0026103) #30	Glmp (MGP_SPRETEiJ_G0026102) #31	Cct3 (MGP_SPRETEiJ_G0026101) #32	Tsacc (MGP_SPRETEiJ_G0026100) #33	MGP_SPRETEiJ_G0026099 #34	Rhbg (MGP_SPRETEiJ_G0026098) #35	Mef2d (MGP_SPRETEiJ_G0026097) #36
Steppe mouse	MODERN SPECIES	2494						Syt11 (ENSMSIG00000028436) #13	Rit1 (ENSMSIG00000028448) #14	Khdc4 (ENSMSIG00000028451) #15	ENSMSIG00000028469	Arhgef2 (ENSMSIG00000028473) #16	Ssr2 (ENSMSIG00000029173) #17	Ubqln4 (ENSMSIG00000029187) #18	Lamtor2 (ENSMSIG00000029190) #19	Rab25 (ENSMSIG00000029192) #20	ENSMSIG00000029193 #21	Lmna (ENSMSIG00000029196) #22	Sema4a (ENSMSIG00000029207) #23	ENSMSIG00000029223	Slc25a44 (ENSMSIG00000029225) #24	Pmf1 (ENSMSIG00000029235) #25	ENSMSIG00000029238 #26	ENSMSIG00000029245 #28	Smg5 (ENSMSIG00000029250) #29	Tmem79 (ENSMSIG00000029273) #30	Glmp (ENSMSIG00000029280) #31	Cct3 (ENSMSIG00000029307) #32	ENSMSIG00000029349 #33
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0025184 #8	Ash1l (MGP_CAROLIEiJ_G0025183) #9	Dap3 (MGP_CAROLIEiJ_G0025182) #10	Msto1 (MGP_CAROLIEiJ_G0025181) #11	MGP_CAROLIEiJ_G0025180 #12	Syt11 (MGP_CAROLIEiJ_G0025179) #13	Rit1 (MGP_CAROLIEiJ_G0025178) #14	Khdc4 (MGP_CAROLIEiJ_G0025177) #15	Rxfp4 (MGP_CAROLIEiJ_G0025176)	Arhgef2 (MGP_CAROLIEiJ_G0025175) #16	Ssr2 (MGP_CAROLIEiJ_G0025174) #17	Ubqln4 (MGP_CAROLIEiJ_G0025173) #18	Lamtor2 (MGP_CAROLIEiJ_G0025172) #19	Rab25 (MGP_CAROLIEiJ_G0025171) #20	Mex3a (MGP_CAROLIEiJ_G0025170) #21	Lmna (MGP_CAROLIEiJ_G0025169) #22	Sema4a (MGP_CAROLIEiJ_G0025168) #23	Slc25a44 (MGP_CAROLIEiJ_G0025167) #24	Pmf1 (MGP_CAROLIEiJ_G0025166) #25	MGP_CAROLIEiJ_G0025165 #26	Paqr6 (MGP_CAROLIEiJ_G0025164) #28	Smg5 (MGP_CAROLIEiJ_G0025163) #29	Tmem79 (MGP_CAROLIEiJ_G0025162) #30	Glmp (MGP_CAROLIEiJ_G0025161) #31	Cct3 (MGP_CAROLIEiJ_G0025160) #32	Tsacc (MGP_CAROLIEiJ_G0025159) #33	MGP_CAROLIEiJ_G0025158 #34	Rhbg (MGP_CAROLIEiJ_G0025157) #35	Mef2d (MGP_CAROLIEiJ_G0025156) #36	Iqgap3 (MGP_CAROLIEiJ_G0025155) #37	MGP_CAROLIEiJ_G0025154
Rat	MODERN SPECIES	11	Pklr (ENSRNOG00000020420)	Fdps (ENSRNOG00000043377) #7	Ash1l (ENSRNOG00000020386) #9	Dap3 (ENSRNOG00000020373) #10	Msto1 (ENSRNOG00000020357) #11	Gon4l (ENSRNOG00000020297) #12	Syt11 (ENSRNOG00000020279) #13	Rit1 (ENSRNOG00000064584) #14	Khdc4 (ENSRNOG00000020139) #15	Arhgef2 (ENSRNOG00000020027) #16	Ssr2 (ENSRNOG00000019940) #17	Ubqln4 (ENSRNOG00000019933) #18	Lamtor2 (ENSRNOG00000019908) #19	Rab25 (ENSRNOG00000023640) #20	Mex3a (ENSRNOG00000058654) #21	Lmna (ENSRNOG00000019638) #22	Sema4a (ENSRNOG00000019737) #23	Slc25a44 (ENSRNOG00000025269) #24	Pmf1 (ENSRNOG00000019620) #25	Bglap (ENSRNOG00000019607) #26	Paqr6 (ENSRNOG00000026059) #28	Smg5 (ENSRNOG00000019590) #29	Tmem79 (ENSRNOG00000019414) #30	Glmp (ENSRNOG00000019281) #31	Cct3 (ENSRNOG00000019090) #32	Tsacc (ENSRNOG00000037552) #33	Rhbg (ENSRNOG00000019412) #34	Mef2d (ENSRNOG00000031778) #36	Iqgap3 (ENSRNOG00000027894) #37	Ttc24 (ENSRNOG00000028765)	Naxe (ENSRNOG00000019201)