Glires	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Rodentia	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Rodentia_B	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Muroidea	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Murinae	ANCESTRAL SPECIES	5	ENSGT00900000141033.b.b.u ##7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Mus	ANCESTRAL SPECIES	7	ENSGT00900000141033.b.b.v #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a.b #33	ENSGT00950000182844.b.b.a.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00900000141033.b.b.v #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131.e #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a.b #33	ENSGT00950000182844.b.b.a.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0025184 #7	Ash1l (MGP_CAROLIEiJ_G0025183) #8	Dap3 (MGP_CAROLIEiJ_G0025182) #9	Msto1 (MGP_CAROLIEiJ_G0025181) #10	MGP_CAROLIEiJ_G0025180 #11	Syt11 (MGP_CAROLIEiJ_G0025179) #12	Rit1 (MGP_CAROLIEiJ_G0025178) #13	Khdc4 (MGP_CAROLIEiJ_G0025177) #14	Rxfp4 (MGP_CAROLIEiJ_G0025176) #15	Arhgef2 (MGP_CAROLIEiJ_G0025175) #16	Ssr2 (MGP_CAROLIEiJ_G0025174) #17	Ubqln4 (MGP_CAROLIEiJ_G0025173) #18	Lamtor2 (MGP_CAROLIEiJ_G0025172) #19	Rab25 (MGP_CAROLIEiJ_G0025171) #20	Mex3a (MGP_CAROLIEiJ_G0025170) #21	Lmna (MGP_CAROLIEiJ_G0025169) #22	Sema4a (MGP_CAROLIEiJ_G0025168) #23	Slc25a44 (MGP_CAROLIEiJ_G0025167) #24	Pmf1 (MGP_CAROLIEiJ_G0025166) #25	MGP_CAROLIEiJ_G0025165 #26	Paqr6 (MGP_CAROLIEiJ_G0025164) #27	Smg5 (MGP_CAROLIEiJ_G0025163) #28	Tmem79 (MGP_CAROLIEiJ_G0025162) #29	Glmp (MGP_CAROLIEiJ_G0025161) #30	Cct3 (MGP_CAROLIEiJ_G0025160) #31	Tsacc (MGP_CAROLIEiJ_G0025159) #32	MGP_CAROLIEiJ_G0025158 #33	Rhbg (MGP_CAROLIEiJ_G0025157) #34	Mef2d (MGP_CAROLIEiJ_G0025156) #35	Iqgap3 (MGP_CAROLIEiJ_G0025155) #36	MGP_CAROLIEiJ_G0025154 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00900000141033.b.b.v #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131.e #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a.b #33	ENSGT00950000182844.b.b.a.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Mouse	MODERN SPECIES	12	Rusc1 (ENSMUSG00000041263) ##7	Ash1l (ENSMUSG00000028053) #8	Dap3 (ENSMUSG00000068921) #9	Msto1 (ENSMUSG00000068922) #10	Gon4l (ENSMUSG00000054199) #11	Syt11 (ENSMUSG00000068923) #12	Rit1 (ENSMUSG00000028057) #13	Khdc4 (ENSMUSG00000028060) #14	Rxfp4 (ENSMUSG00000049741) #15	Arhgef2 (ENSMUSG00000028059) #16	Ssr2 (ENSMUSG00000041355) #17	Ubqln4 (ENSMUSG00000008604) #18	Lamtor2 (ENSMUSG00000028062) #19	Rab25 (ENSMUSG00000008601) #20	Mex3a (ENSMUSG00000074480) #21	Lmna (ENSMUSG00000028063) #22	Sema4a (ENSMUSG00000028064) #23	Slc25a44 (ENSMUSG00000050144) #24	Pmf1 (ENSMUSG00000028066) #25	Bglap (ENSMUSG00000074483) #26	Bglap2 (ENSMUSG00000074486) #26	Bglap3 (ENSMUSG00000074489) #26	Paqr6 (ENSMUSG00000041423) #27	Smg5 (ENSMUSG00000001415) #28	Tmem79 (ENSMUSG00000001420) #29	Glmp (ENSMUSG00000001418) #30	Cct3 (ENSMUSG00000001416) #31	Tsacc (ENSMUSG00000010538) #32	Gm38392 (ENSMUSG00000103766)	Rhbg (ENSMUSG00000104445) #34	Mef2d (ENSMUSG00000001419) #35
Mus_C	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b.v #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131.e #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a.b #33	ENSGT00950000182844.b.b.a.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
spretus	MODERN SPECIES	12	MGP_SPRETEiJ_G0026127 #7	Ash1l (MGP_SPRETEiJ_G0026126) #8	Dap3 (MGP_SPRETEiJ_G0026125) #9	Msto1 (MGP_SPRETEiJ_G0026124) #10	Gon4l (MGP_SPRETEiJ_G0026123) #11	Syt11 (MGP_SPRETEiJ_G0026122) #12	Rit1 (MGP_SPRETEiJ_G0026121) #13	Khdc4 (MGP_SPRETEiJ_G0026120) #14	Rxfp4 (MGP_SPRETEiJ_G0026119) #15	Arhgef2 (MGP_SPRETEiJ_G0026118) #16	Ssr2 (MGP_SPRETEiJ_G0026117) #17	Ubqln4 (MGP_SPRETEiJ_G0026116) #18	Lamtor2 (MGP_SPRETEiJ_G0026115) #19	Rab25 (MGP_SPRETEiJ_G0026114) #20	MGP_SPRETEiJ_G0026113 #21	Lmna (MGP_SPRETEiJ_G0026112) #22	Sema4a (MGP_SPRETEiJ_G0026111) #23	Slc25a44 (MGP_SPRETEiJ_G0026110) #24	Pmf1 (MGP_SPRETEiJ_G0026109) #25	MGP_SPRETEiJ_G0026107 #26	MGP_SPRETEiJ_G0026108 #26	MGP_SPRETEiJ_G0026106 #26	Paqr6 (MGP_SPRETEiJ_G0026105) #27	Smg5 (MGP_SPRETEiJ_G0026104) #28	Tmem79 (MGP_SPRETEiJ_G0026103) #29	Glmp (MGP_SPRETEiJ_G0026102) #30	Cct3 (MGP_SPRETEiJ_G0026101) #31	Tsacc (MGP_SPRETEiJ_G0026100) #32	MGP_SPRETEiJ_G0026099 #33	Rhbg (MGP_SPRETEiJ_G0026098) #34	Mef2d (MGP_SPRETEiJ_G0026097) #35
Steppe mouse	MODERN SPECIES	2494						Syt11 (ENSMSIG00000028436) #12	Rit1 (ENSMSIG00000028448) #13	Khdc4 (ENSMSIG00000028451) #14	ENSMSIG00000028469	Arhgef2 (ENSMSIG00000028473) #16	Ssr2 (ENSMSIG00000029173) #17	Ubqln4 (ENSMSIG00000029187) #18	Lamtor2 (ENSMSIG00000029190) #19	Rab25 (ENSMSIG00000029192) #20	ENSMSIG00000029193 #21	Lmna (ENSMSIG00000029196) #22	Sema4a (ENSMSIG00000029207) #23	ENSMSIG00000029223	Slc25a44 (ENSMSIG00000029225) #24	Pmf1 (ENSMSIG00000029235) #25	ENSMSIG00000029238 #26	ENSMSIG00000029245 #27	Smg5 (ENSMSIG00000029250) #28	Tmem79 (ENSMSIG00000029273) #29	Glmp (ENSMSIG00000029280) #30	Cct3 (ENSMSIG00000029307) #31	ENSMSIG00000029349 #32
Shrew mouse	MODERN SPECIES	17	Rusc1 (MGP_PahariEiJ_G0026629) ##7	MGP_PahariEiJ_G0026628 #7	Ash1l (MGP_PahariEiJ_G0026627) #8	Dap3 (MGP_PahariEiJ_G0026626) #9	MGP_PahariEiJ_G0026625 #10	Gon4l (MGP_PahariEiJ_G0026624) #11	Syt11 (MGP_PahariEiJ_G0026623) #12	Rit1 (MGP_PahariEiJ_G0026622) #13	Khdc4 (MGP_PahariEiJ_G0026621) #14	Arhgef2 (MGP_PahariEiJ_G0026620) #16	Ssr2 (MGP_PahariEiJ_G0026619) #17	Ubqln4 (MGP_PahariEiJ_G0026618) #18	Lamtor2 (MGP_PahariEiJ_G0026617) #19	Rab25 (MGP_PahariEiJ_G0026616) #20	Mex3a (MGP_PahariEiJ_G0026615) #21	Lmna (MGP_PahariEiJ_G0026614) #22	Sema4a (MGP_PahariEiJ_G0026613) #23	Slc25a44 (MGP_PahariEiJ_G0026612) #24	Pmf1 (MGP_PahariEiJ_G0026611) #25	MGP_PahariEiJ_G0026609 #26	MGP_PahariEiJ_G0026610 #26	Paqr6 (MGP_PahariEiJ_G0026607) #27	Smg5 (MGP_PahariEiJ_G0026606) #28	Tmem79 (MGP_PahariEiJ_G0026605) #29	Glmp (MGP_PahariEiJ_G0026604) #30	MGP_PahariEiJ_G0026603 #31	Tsacc (MGP_PahariEiJ_G0026602) #32	MGP_PahariEiJ_G0026601 #33	Rhbg (MGP_PahariEiJ_G0026600) #34	Mef2d (MGP_PahariEiJ_G0026599) #35	Iqgap3 (MGP_PahariEiJ_G0026598) #36
Rat	MODERN SPECIES	11	Pklr (ENSRNOG00000020420)	Fdps (ENSRNOG00000043377) ##7	Ash1l (ENSRNOG00000020386) #8	Dap3 (ENSRNOG00000020373) #9	Msto1 (ENSRNOG00000020357) #10	Gon4l (ENSRNOG00000020297) #11	Syt11 (ENSRNOG00000020279) #12	Rit1 (ENSRNOG00000064584) #13	Khdc4 (ENSRNOG00000020139) #14	Arhgef2 (ENSRNOG00000020027) #16	Ssr2 (ENSRNOG00000019940) #17	Ubqln4 (ENSRNOG00000019933) #18	Lamtor2 (ENSRNOG00000019908) #19	Rab25 (ENSRNOG00000023640) #20	Mex3a (ENSRNOG00000058654) #21	Lmna (ENSRNOG00000019638) #22	Sema4a (ENSRNOG00000019737) #23	Slc25a44 (ENSRNOG00000025269) #24	Pmf1 (ENSRNOG00000019620) #25	Bglap (ENSRNOG00000019607) #26	Paqr6 (ENSRNOG00000026059) #27	Smg5 (ENSRNOG00000019590) #28	Tmem79 (ENSRNOG00000019414) #29	Glmp (ENSRNOG00000019281) #30	Cct3 (ENSRNOG00000019090) #31	Tsacc (ENSRNOG00000037552) #32	Rhbg (ENSRNOG00000019412) #33	Mef2d (ENSRNOG00000031778) #35	Iqgap3 (ENSRNOG00000027894) #36	Ttc24 (ENSRNOG00000028765) #37	Naxe (ENSRNOG00000019201)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224.x #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224.x #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Chinese hamster chok1gshd	MODERN SPECIES	352	Rusc1 (ENSCGRG00001009459) #7	Ash1l (ENSCGRG00001011192) #8	Dap3 (ENSCGRG00001022521) #9	Msto1 (ENSCGRG00001015681) #10	Gon4l (ENSCGRG00001023253) #11	Syt11 (ENSCGRG00001023824) #12	Rit1 (ENSCGRG00001004542) #13	Khdc4 (ENSCGRG00001012564) #14	Rxfp4 (ENSCGRG00001002374) #15	Arhgef2 (ENSCGRG00001006987) #16	Ssr2 (ENSCGRG00001006822) #17	Ubqln4 (ENSCGRG00001019653) #18	Lamtor2 (ENSCGRG00001008748) #19	Rab25 (ENSCGRG00001017341) #20	Mex3a (ENSCGRG00001000412) #21	Lmna (ENSCGRG00001003129) #22	Sema4a (ENSCGRG00001020918) #23	Slc25a44 (ENSCGRG00001021651) #24	Pmf1 (ENSCGRG00001010918) #25	ENSCGRG00001014532 #26	Paqr6 (ENSCGRG00001016796) #27	Smg5 (ENSCGRG00001006336) #28	Tmem79 (ENSCGRG00001024551) #29	Glmp (ENSCGRG00001007094) #30	Cct3 (ENSCGRG00001015935) #31	Tsacc (ENSCGRG00001019825) #32	Rhbg (ENSCGRG00001000730) #33	Mef2d (ENSCGRG00001013661) #35	Iqgap3 (ENSCGRG00001021083) #36	ENSCGRG00001013450 #37	Naxe (ENSCGRG00001023331)
Golden Hamster	MODERN SPECIES	714	Pklr (ENSMAUG00000012808)	Fdps (ENSMAUG00000020872)	ENSMAUG00000017088 #7	Ash1l (ENSMAUG00000000702) #8	Msto1 (ENSMAUG00000020345) #10	ENSMAUG00000000631 #11	ENSMAUG00000013419 #12	Rit1 (ENSMAUG00000000572) #13	Khdc4 (ENSMAUG00000019676) #14	ENSMAUG00000013645 #16	ENSMAUG00000019940 #16	Ssr2 (ENSMAUG00000021161) #17	Ubqln4 (ENSMAUG00000007686) #18	Lamtor2 (ENSMAUG00000000547) #19	Mex3a (ENSMAUG00000012601) #21	Lmna (ENSMAUG00000012838) #22	ENSMAUG00000017061 #23	Slc25a44 (ENSMAUG00000021047) #24	Pmf1 (ENSMAUG00000019629) #25	ENSMAUG00000015288 #26	Paqr6 (ENSMAUG00000010297) #27	Smg5 (ENSMAUG00000010381) #28	Tmem79 (ENSMAUG00000014791) #29	ENSMAUG00000014449 #31	Tsacc (ENSMAUG00000016723) #32	Rhbg (ENSMAUG00000009341) #33	Mef2d (ENSMAUG00000016452) #35	Iqgap3 (ENSMAUG00000008455) #36	ENSMAUG00000018760 #37	Naxe (ENSMAUG00000018064)	ENSMAUG00000008406
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224.x #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Prairie vole	MODERN SPECIES	8								ENSMOCG00000007816 #14	ENSMOCG00000019234 #16	ENSMOCG00000020991 #16	Ssr2 (ENSMOCG00000001890) #17	ENSMOCG00000013140 #18	Lamtor2 (ENSMOCG00000018988) #19	Rab25 (ENSMOCG00000010953) #20	Mex3a (ENSMOCG00000017881) #21	Lmna (ENSMOCG00000011854) #22	Sema4a (ENSMOCG00000022467) #23	Slc25a44 (ENSMOCG00000014671) #24	ENSMOCG00000018426 #25	ENSMOCG00000019680 #26	Paqr6 (ENSMOCG00000006437) #27	Smg5 (ENSMOCG00000016590) #28	Tmem79 (ENSMOCG00000017414) #29	Glmp (ENSMOCG00000009096) #30	Cct3 (ENSMOCG00000010144) #31	Tsacc (ENSMOCG00000013419) #32	ENSMOCG00000022002	Rhbg (ENSMOCG00000005326) #33	ENSMOCG00000008030	Mef2d (ENSMOCG00000003757) #35	Iqgap3 (ENSMOCG00000020658) #36
Northern American deer mouse	MODERN SPECIES	19	Rusc1 (ENSPEMG00000018232) #7	Ash1l (ENSPEMG00000006789) #8	ENSPEMG00000019185 #9	Msto1 (ENSPEMG00000016178) #10	Gon4l (ENSPEMG00000017252) #11	Syt11 (ENSPEMG00000003809) #12	Rit1 (ENSPEMG00000030433) #13	Khdc4 (ENSPEMG00000007794) #14	Rxfp4 (ENSPEMG00000011662) #15	Arhgef2 (ENSPEMG00000002997) #16	Ssr2 (ENSPEMG00000012464) #17	Ubqln4 (ENSPEMG00000016759) #18	Lamtor2 (ENSPEMG00000009818) #19	Rab25 (ENSPEMG00000007548) #20	Mex3a (ENSPEMG00000019014) #21	Lmna (ENSPEMG00000015821) #22	Sema4a (ENSPEMG00000015516) #23	Slc25a44 (ENSPEMG00000013362) #24	Pmf1 (ENSPEMG00000012625) #25	ENSPEMG00000025586 #26	Paqr6 (ENSPEMG00000002777) #27	Smg5 (ENSPEMG00000001819) #28	Tmem79 (ENSPEMG00000007739) #29	Glmp (ENSPEMG00000013529) #30	Cct3 (ENSPEMG00000015732) #31	Tsacc (ENSPEMG00000014593) #32	Rhbg (ENSPEMG00000011996) #33	Mef2d (ENSPEMG00000019035) #35	Iqgap3 (ENSPEMG00000016406) #36	ENSPEMG00000017615 #37	Naxe (ENSPEMG00000018271)
Upper Galilee mountains blind mole rat	MODERN SPECIES	497	Rusc1 (ENSNGAG00000008260) #7	Ash1l (ENSNGAG00000021986) #8	Dap3 (ENSNGAG00000014173) #9	Msto1 (ENSNGAG00000022769) #10	Gon4l (ENSNGAG00000020844) #11	Syt11 (ENSNGAG00000013529) #12	Rit1 (ENSNGAG00000013104) #13	Khdc4 (ENSNGAG00000012421) #14	ENSNGAG00000011350 #16	ENSNGAG00000009107 #16	Ssr2 (ENSNGAG00000002859) #17	Ubqln4 (ENSNGAG00000020831) #18	Lamtor2 (ENSNGAG00000020249) #19	Rab25 (ENSNGAG00000019999) #20	Mex3a (ENSNGAG00000019587) #21	Lmna (ENSNGAG00000017368) #22	Sema4a (ENSNGAG00000012750) #23	Slc25a44 (ENSNGAG00000010575) #24	Pmf1 (ENSNGAG00000007750) #25	ENSNGAG00000001625 #26	Paqr6 (ENSNGAG00000000673) #27	Smg5 (ENSNGAG00000020706) #28	Tmem79 (ENSNGAG00000020294) #29	Glmp (ENSNGAG00000019347) #30	Cct3 (ENSNGAG00000016875) #31	Rhbg (ENSNGAG00000019322) #33	Mef2d (ENSNGAG00000016036) #35	Iqgap3 (ENSNGAG00000020879) #36	Naxe (ENSNGAG00000020268)	ENSNGAG00000019958	Hapln2 (ENSNGAG00000019736)
Lesser Egyptian jerboa	MODERN SPECIES	141	Ash1l (ENSJJAG00000017942) #8	Dap3 (ENSJJAG00000010235) #9	Msto1 (ENSJJAG00000019140) #10	ENSJJAG00000013614 #11	ENSJJAG00000010636 #12	Rit1 (ENSJJAG00000023411) #13	ENSJJAG00000020627 #14	Rxfp4 (ENSJJAG00000013686) #15	ENSJJAG00000017646 #16	ENSJJAG00000016067 #16	Ssr2 (ENSJJAG00000024209) #17	Ubqln4 (ENSJJAG00000002118) #18	ENSJJAG00000021135 #19	Rab25 (ENSJJAG00000021013) #20	Mex3a (ENSJJAG00000020484) #21	Lmna (ENSJJAG00000019904) #22	Sema4a (ENSJJAG00000016229) #23	Slc25a44 (ENSJJAG00000001462) #24	Pmf1 (ENSJJAG00000013470) #25	ENSJJAG00000000652 #26	Paqr6 (ENSJJAG00000001367) #27	Smg5 (ENSJJAG00000022763) #28	Tmem79 (ENSJJAG00000023610) #29	ENSJJAG00000019201	Cct3 (ENSJJAG00000013939) #31	ENSJJAG00000017067	Mef2d (ENSJJAG00000011790) #35	Iqgap3 (ENSJJAG00000000649) #36	ENSJJAG00000021021 #37	Naxe (ENSJJAG00000023933)	Hapln2 (ENSJJAG00000016470)
Kangaroo rat	MODERN SPECIES	345	ENSDORG00000024404 #7	ENSDORG00000025813 #7	Ash1l (ENSDORG00000025575) #8	Dap3 (ENSDORG00000003596) #9	Msto1 (ENSDORG00000029541) #10	Gon4l (ENSDORG00000003598) #11	Syt11 (ENSDORG00000023709) #12	Rit1 (ENSDORG00000014601) #13	Khdc4 (ENSDORG00000014602) #14	Arhgef2 (ENSDORG00000012162) #16	ENSDORG00000010536 #17	Ubqln4 (ENSDORG00000010538) #18	Lamtor2 (ENSDORG00000002923) #19	Rab25 (ENSDORG00000002922) #20	Mex3a (ENSDORG00000002921) #21	Lmna (ENSDORG00000002470) #22	Sema4a (ENSDORG00000008821) #23
Rodentia_A	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Sciuridae	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132.e #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Marmotini	ANCESTRAL SPECIES	33	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132.e #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Marmotini_b	ANCESTRAL SPECIES	37	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132.e #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Squirrel	MODERN SPECIES	180	RUSC1 (ENSSTOG00000004516) #7	ASH1L (ENSSTOG00000019952) #8	DAP3 (ENSSTOG00000004627) #9	MSTO1 (ENSSTOG00000004655) #10	ENSSTOG00000004664 #11	SYT11 (ENSSTOG00000004720) #12	RIT1 (ENSSTOG00000021028) #13	KHDC4 (ENSSTOG00000004732) #14	RXFP4 (ENSSTOG00000000616) #15	ARHGEF2 (ENSSTOG00000000620) #16	SSR2 (ENSSTOG00000028971) #17	UBQLN4 (ENSSTOG00000020043) #18	LAMTOR2 (ENSSTOG00000023389) #19	RAB25 (ENSSTOG00000000634) #20	MEX3A (ENSSTOG00000024275) #21	LMNA (ENSSTOG00000001758) #22	SEMA4A (ENSSTOG00000028050) #23	SLC25A44 (ENSSTOG00000001764) #24	PMF1 (ENSSTOG00000001768) #25	ENSSTOG00000034466	BGLAP (ENSSTOG00000027908) #26	PAQR6 (ENSSTOG00000001772) #27	SMG5 (ENSSTOG00000001780) #28	TMEM79 (ENSSTOG00000026140) #29	GLMP (ENSSTOG00000015763) #30	CCT3 (ENSSTOG00000001798) #31	TSACC (ENSSTOG00000001810) #32	RHBG (ENSSTOG00000028396) #33	MEF2D (ENSSTOG00000025590) #35	IQGAP3 (ENSSTOG00000016076) #36	ENSSTOG00000016083 #37
Arctic ground squirrel	MODERN SPECIES	309	RUSC1 (ENSUPAG00010002787) #7	ASH1L (ENSUPAG00010002818) #8	ENSUPAG00010002886 #9	MSTO1 (ENSUPAG00010002943) #10	ENSUPAG00010002975 #11	SYT11 (ENSUPAG00010003045) #12	ENSUPAG00010003055 #13	KHDC4 (ENSUPAG00010003067) #14	ENSUPAG00010003101	ARHGEF2 (ENSUPAG00010003114) #16	SSR2 (ENSUPAG00010003598) #17	UBQLN4 (ENSUPAG00010003613) #18	LAMTOR2 (ENSUPAG00010003634) #19	RAB25 (ENSUPAG00010003640) #20	MEX3A (ENSUPAG00010003653) #21	LMNA (ENSUPAG00010003669) #22	SEMA4A (ENSUPAG00010003712) #23	SLC25A44 (ENSUPAG00010004013) #24	PMF1 (ENSUPAG00010004034) #25	BGLAP (ENSUPAG00010004045) #26	ENSUPAG00010004061 #27	SMG5 (ENSUPAG00010004091) #28	TMEM79 (ENSUPAG00010004129) #29	GLMP (ENSUPAG00010004142) #30	CCT3 (ENSUPAG00010004189) #31	TSACC (ENSUPAG00010004234) #32	RHBG (ENSUPAG00010004243) #33	MEF2D (ENSUPAG00010004263) #35	IQGAP3 (ENSUPAG00010004467) #36	ENSUPAG00010004535 #37	NAXE (ENSUPAG00010004540)
Alpin marmot	MODERN SPECIES	85	ENSMMMG00000014387 #7	ASH1L (ENSMMMG00000014324) #8	DAP3 (ENSMMMG00000014245) #9	MSTO1 (ENSMMMG00000014213) #10	ENSMMMG00000014163 #11	SYT11 (ENSMMMG00000014151) #12	ENSMMMG00000014145 #13	KHDC4 (ENSMMMG00000014104) #14	RXFP4 (ENSMMMG00000014101) #15	ARHGEF2 (ENSMMMG00000013899) #16	SSR2 (ENSMMMG00000013889) #17	UBQLN4 (ENSMMMG00000013874) #18	LAMTOR2 (ENSMMMG00000013864) #19	RAB25 (ENSMMMG00000013857) #20	MEX3A (ENSMMMG00000013855) #21	LMNA (ENSMMMG00000013831) #22	SEMA4A (ENSMMMG00000013785) #23	SLC25A44 (ENSMMMG00000013773) #24	ENSMMMG00000013758	BGLAP (ENSMMMG00000013734) #26	PAQR6 (ENSMMMG00000013724) #27	SMG5 (ENSMMMG00000013706) #28	TMEM79 (ENSMMMG00000013693) #29	GLMP (ENSMMMG00000013644) #30	CCT3 (ENSMMMG00000013571) #31	TSACC (ENSMMMG00000013564) #32	RHBG (ENSMMMG00000013553) #33	ENSMMMG00000013541 #35	IQGAP3 (ENSMMMG00000013468) #36	ENSMMMG00000013455 #37	NAXE (ENSMMMG00000013443)
Eurasian red squirrel	MODERN SPECIES		FDPS (ENSSVLG00005000103)	RUSC1 (ENSSVLG00005000107) #7	ENSSVLG00005000118 #8	MSTO1 (ENSSVLG00005000136) #10	ENSSVLG00005000147 #11	ENSSVLG00005000171 #12	ENSSVLG00005000188 #13	KHDC4 (ENSSVLG00005000224) #14	RXFP4 (ENSSVLG00005000258) #15	ARHGEF2 (ENSSVLG00005000357) #16	SSR2 (ENSSVLG00005000552) #17	UBQLN4 (ENSSVLG00005000591) #18	LAMTOR2 (ENSSVLG00005000628) #19	RAB25 (ENSSVLG00005000653) #20	MEX3A (ENSSVLG00005000673) #21	LMNA (ENSSVLG00005000714) #22	SEMA4A (ENSSVLG00005000802) #23	SLC25A44 (ENSSVLG00005000872) #24	PMF1 (ENSSVLG00005000891) #25	BGLAP (ENSSVLG00005000913) #26	PAQR6 (ENSSVLG00005000936) #27	SMG5 (ENSSVLG00005000972) #28	ENSSVLG00005000998	GLMP (ENSSVLG00005001024) #30	CCT3 (ENSSVLG00005001076) #31	TSACC (ENSSVLG00005001124) #32	RHBG (ENSSVLG00005001146) #33	MEF2D (ENSSVLG00005001227) #35	IQGAP3 (ENSSVLG00005001534) #36	TTC24 (ENSSVLG00005002076) #37	ENSSVLG00005002106
Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224.z.a #31	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00960000190501
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000006300 #7	ENSHGLG00000049863	ASH1L (ENSHGLG00000008090) #8	DAP3 (ENSHGLG00000013978) #9	MSTO1 (ENSHGLG00000018369) #10	ENSHGLG00000006556 #11	SYT11 (ENSHGLG00000032288) #12	ENSHGLG00000034706 #13	KHDC4 (ENSHGLG00000010495) #14	RXFP4 (ENSHGLG00000037004) #15	SSR2 (ENSHGLG00000035940) #17	UBQLN4 (ENSHGLG00000003684) #18	LAMTOR2 (ENSHGLG00000036352) #19	RAB25 (ENSHGLG00000005517) #20	MEX3A (ENSHGLG00000041429) #21	ENSHGLG00000036594 #22	SEMA4A (ENSHGLG00000003587) #23	SLC25A44 (ENSHGLG00000042222) #24	ENSHGLG00000007944 #26	PAQR6 (ENSHGLG00000015640) #27	SMG5 (ENSHGLG00000019152) #28	TMEM79 (ENSHGLG00000018185) #29	GLMP (ENSHGLG00000041332) #30	ENSHGLG00000003153 #31	RHBG (ENSHGLG00000005998) #33	MEF2D (ENSHGLG00000019055) #35	IQGAP3 (ENSHGLG00000018362) #36	NAXE (ENSHGLG00000007354)	ENSHGLG00000041268	ENSHGLG00000011346	HAPLN2 (ENSHGLG00000003467)
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224.y #31	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224.z.a #31	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765
Degu	MODERN SPECIES	73	ASH1L (ENSODEG00000009920) #8	DAP3 (ENSODEG00000010674) #9	MSTO1 (ENSODEG00000011191) #10	ENSODEG00000010737	ENSODEG00000011008 #11	SYT11 (ENSODEG00000010870) #12	RIT1 (ENSODEG00000010128) #13	ENSODEG00000009528 #14	ENSODEG00000019992	ARHGEF2 (ENSODEG00000011373) #16	SSR2 (ENSODEG00000010659) #17	UBQLN4 (ENSODEG00000010901) #18	LAMTOR2 (ENSODEG00000010141) #19	RAB25 (ENSODEG00000009908) #20	MEX3A (ENSODEG00000009643) #21	LMNA (ENSODEG00000009369) #22	SEMA4A (ENSODEG00000009359) #23	SLC25A44 (ENSODEG00000009774) #24	PMF1 (ENSODEG00000011902) #25	BGLAP (ENSODEG00000010926) #26	PAQR6 (ENSODEG00000010747) #27	SMG5 (ENSODEG00000012237) #28	TMEM79 (ENSODEG00000012508) #29	GLMP (ENSODEG00000009800) #30	ENSODEG00000009974 #31	RHBG (ENSODEG00000009136) #33	MEF2D (ENSODEG00000010190) #35	IQGAP3 (ENSODEG00000010076) #36	ENSODEG00000009606 #37	ENSODEG00000010121	ENSODEG00000010437
Long-tailed chinchilla	MODERN SPECIES	252	FDPS (ENSCLAG00000005410)	RUSC1 (ENSCLAG00000005579) #7	ASH1L (ENSCLAG00000004536) #8	DAP3 (ENSCLAG00000005599) #9	MSTO1 (ENSCLAG00000006273) #10	ENSCLAG00000006556 #11	SYT11 (ENSCLAG00000013172) #12	RIT1 (ENSCLAG00000013305) #13	KHDC4 (ENSCLAG00000010544) #14	ARHGEF2 (ENSCLAG00000013596) #16	SSR2 (ENSCLAG00000003363) #17	UBQLN4 (ENSCLAG00000003519) #18	LAMTOR2 (ENSCLAG00000003700) #19	RAB25 (ENSCLAG00000003784) #20	MEX3A (ENSCLAG00000003842) #21	LMNA (ENSCLAG00000003894) #22	SEMA4A (ENSCLAG00000005297) #23	SLC25A44 (ENSCLAG00000005587) #24	PMF1 (ENSCLAG00000003672) #25	BGLAP (ENSCLAG00000003710) #26	PAQR6 (ENSCLAG00000003899) #27	SMG5 (ENSCLAG00000003983) #28	TMEM79 (ENSCLAG00000004142) #29	GLMP (ENSCLAG00000004192) #30	ENSCLAG00000004359 #31	RHBG (ENSCLAG00000004625) #33	MEF2D (ENSCLAG00000004702) #35	IQGAP3 (ENSCLAG00000004927) #36	ENSCLAG00000002793 #37	NAXE (ENSCLAG00000002832)	ENSCLAG00000002967
Guinea pig	MODERN SPECIES	10	RUSC1 (ENSCPOG00000032934) #7	ASH1L (ENSCPOG00000004801) #8	DAP3 (ENSCPOG00000030924) #9	MSTO1 (ENSCPOG00000004857) #10	ENSCPOG00000004859 #11	SYT11 (ENSCPOG00000004866) #12	RIT1 (ENSCPOG00000004868) #13	KHDC4 (ENSCPOG00000004870) #14	ENSCPOG00000032356	ARHGEF2 (ENSCPOG00000025396) #16	SSR2 (ENSCPOG00000023729) #17	UBQLN4 (ENSCPOG00000002467) #18	LAMTOR2 (ENSCPOG00000032238) #19	RAB25 (ENSCPOG00000002472) #20	MEX3A (ENSCPOG00000020219) #21	LMNA (ENSCPOG00000023214) #22	SEMA4A (ENSCPOG00000015694) #23	SLC25A44 (ENSCPOG00000021129) #24	PMF1 (ENSCPOG00000015695) #25	BGLAP (ENSCPOG00000040505) #26	PAQR6 (ENSCPOG00000019726) #27	SMG5 (ENSCPOG00000015696) #28	TMEM79 (ENSCPOG00000033881) #29	GLMP (ENSCPOG00000032634) #30	CCT3 (ENSCPOG00000009131) #31	RHBG (ENSCPOG00000011135) #33	MEF2D (ENSCPOG00000036656) #35	IQGAP3 (ENSCPOG00000005361) #36	ENSCPOG00000012272 #37	NAXE (ENSCPOG00000024878)	ENSCPOG00000013701
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01090000260051.b.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224 #31	ENSGT00390000012524 #32	ENSGT00950000182844.b.b.a #33	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Pika	MODERN SPECIES	3341										ARHGEF2 (ENSOPRG00000002782) #16	SSR2 (ENSOPRG00000002830) #17	UBQLN4 (ENSOPRG00000002851) #18	LAMTOR2 (ENSOPRG00000002877) #19	RAB25 (ENSOPRG00000002894) #20	MEX3A (ENSOPRG00000002937) #21	LMNA (ENSOPRG00000002966) #22	SEMA4A (ENSOPRG00000002992) #23	SLC25A44 (ENSOPRG00000003022) #24
Rabbit	MODERN SPECIES	4	ENSOCUG00000034353	DAP3 (ENSOCUG00000004785) #9	MSTO1 (ENSOCUG00000010186) #10	ENSOCUG00000010191 #11	ENSOCUG00000026145 #11	SYT11 (ENSOCUG00000027971) #12	RIT1 (ENSOCUG00000006377) #13	KHDC4 (ENSOCUG00000010430) #14	ENSOCUG00000026819	ARHGEF2 (ENSOCUG00000001937) #16	SSR2 (ENSOCUG00000008455) #17	UBQLN4 (ENSOCUG00000007156) #18	LAMTOR2 (ENSOCUG00000027994) #19	RAB25 (ENSOCUG00000005634) #20	ENSOCUG00000005640 #21	LMNA (ENSOCUG00000010011) #22	SEMA4A (ENSOCUG00000001326) #23	SLC25A44 (ENSOCUG00000012861) #24	PMF1 (ENSOCUG00000012870) #25	BGLAP (ENSOCUG00000025958) #26	SMG5 (ENSOCUG00000012886) #28	ENSOCUG00000012899 #29	GLMP (ENSOCUG00000026609) #30	CCT3 (ENSOCUG00000000137) #31	TSACC (ENSOCUG00000029754) #32	RHBG (ENSOCUG00000016130) #33	MEF2D (ENSOCUG00000012173) #35	TTC24 (ENSOCUG00000023015) #37	IQGAP3 (ENSOCUG00000012177) #36	NAXE (ENSOCUG00000016208)	GPATCH4 (ENSOCUG00000025781)