Sarcopterygii	ANCESTRAL SPECIES	49							ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00550000074827	ENSGT00940000157796	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b
Tetrapoda	ANCESTRAL SPECIES	41	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Amniota	ANCESTRAL SPECIES	28	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Mammalia	ANCESTRAL SPECIES	25	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32
Theria	ANCESTRAL SPECIES	3	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Eutheria	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Glires	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Rodentia	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Rodentia_B	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Muroidea	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Murinae	ANCESTRAL SPECIES	5	ENSGT00900000141033.b.b.u	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Mus	ANCESTRAL SPECIES	7	ENSGT00900000141033.b.b.v	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b	ENSGT00950000182844.b.b.a.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Mus_A	ANCESTRAL SPECIES	9	ENSGT00900000141033.b.b.v	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.e #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b	ENSGT00950000182844.b.b.a.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Mus_B	ANCESTRAL SPECIES	8	ENSGT00900000141033.b.b.v	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.e #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b	ENSGT00950000182844.b.b.a.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Mus_C	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b.v	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.e #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b	ENSGT00950000182844.b.b.a.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Steppe mouse	MODERN SPECIES	2494						Syt11 (ENSMSIG00000028436) #12	Rit1 (ENSMSIG00000028448) #13	Khdc4 (ENSMSIG00000028451) #14	ENSMSIG00000028469 #15	Arhgef2 (ENSMSIG00000028473) #16	Ssr2 (ENSMSIG00000029173) #17	Ubqln4 (ENSMSIG00000029187) #18	Lamtor2 (ENSMSIG00000029190) #19	Rab25 (ENSMSIG00000029192) #20	ENSMSIG00000029193 #21	Lmna (ENSMSIG00000029196) #22	Sema4a (ENSMSIG00000029207) #23	ENSMSIG00000029223 #24	Slc25a44 (ENSMSIG00000029225) #25	Pmf1 (ENSMSIG00000029235) #26	ENSMSIG00000029238 #27	ENSMSIG00000029245 #28	Smg5 (ENSMSIG00000029250) #29	Tmem79 (ENSMSIG00000029273) #30	Glmp (ENSMSIG00000029280) #31	Cct3 (ENSMSIG00000029307) #32	ENSMSIG00000029349 #33
spretus	MODERN SPECIES	12	MGP_SPRETEiJ_G0026127	Ash1l (MGP_SPRETEiJ_G0026126)	Dap3 (MGP_SPRETEiJ_G0026125)	Msto1 (MGP_SPRETEiJ_G0026124)	Gon4l (MGP_SPRETEiJ_G0026123)	Syt11 (MGP_SPRETEiJ_G0026122) #12	Rit1 (MGP_SPRETEiJ_G0026121) #13	Khdc4 (MGP_SPRETEiJ_G0026120) #14	Rxfp4 (MGP_SPRETEiJ_G0026119)	Arhgef2 (MGP_SPRETEiJ_G0026118) #16	Ssr2 (MGP_SPRETEiJ_G0026117) #17	Ubqln4 (MGP_SPRETEiJ_G0026116) #18	Lamtor2 (MGP_SPRETEiJ_G0026115) #19	Rab25 (MGP_SPRETEiJ_G0026114) #20	MGP_SPRETEiJ_G0026113 #21	Lmna (MGP_SPRETEiJ_G0026112) #22	Sema4a (MGP_SPRETEiJ_G0026111) #23	Slc25a44 (MGP_SPRETEiJ_G0026110) #25	Pmf1 (MGP_SPRETEiJ_G0026109) #26	MGP_SPRETEiJ_G0026107 #27	MGP_SPRETEiJ_G0026108 #27	MGP_SPRETEiJ_G0026106 #27	Paqr6 (MGP_SPRETEiJ_G0026105) #28	Smg5 (MGP_SPRETEiJ_G0026104) #29	Tmem79 (MGP_SPRETEiJ_G0026103) #30	Glmp (MGP_SPRETEiJ_G0026102) #31	Cct3 (MGP_SPRETEiJ_G0026101) #32	Tsacc (MGP_SPRETEiJ_G0026100) #33	MGP_SPRETEiJ_G0026099	Rhbg (MGP_SPRETEiJ_G0026098)	Mef2d (MGP_SPRETEiJ_G0026097)
Mouse	MODERN SPECIES	12	Rusc1 (ENSMUSG00000041263)	Ash1l (ENSMUSG00000028053)	Dap3 (ENSMUSG00000068921)	Msto1 (ENSMUSG00000068922)	Gon4l (ENSMUSG00000054199)	Syt11 (ENSMUSG00000068923) #12	Rit1 (ENSMUSG00000028057) #13	Khdc4 (ENSMUSG00000028060) #14	Rxfp4 (ENSMUSG00000049741)	Arhgef2 (ENSMUSG00000028059) #16	Ssr2 (ENSMUSG00000041355) #17	Ubqln4 (ENSMUSG00000008604) #18	Lamtor2 (ENSMUSG00000028062) #19	Rab25 (ENSMUSG00000008601) #20	Mex3a (ENSMUSG00000074480) #21	Lmna (ENSMUSG00000028063) #22	Sema4a (ENSMUSG00000028064) #23	Slc25a44 (ENSMUSG00000050144) #25	Pmf1 (ENSMUSG00000028066) #26	Bglap (ENSMUSG00000074483) #27	Bglap2 (ENSMUSG00000074486) #27	Bglap3 (ENSMUSG00000074489) #27	Paqr6 (ENSMUSG00000041423) #28	Smg5 (ENSMUSG00000001415) #29	Tmem79 (ENSMUSG00000001420) #30	Glmp (ENSMUSG00000001418) #31	Cct3 (ENSMUSG00000001416) #32	Tsacc (ENSMUSG00000010538) #33	Gm38392 (ENSMUSG00000103766)	Rhbg (ENSMUSG00000104445)	Mef2d (ENSMUSG00000001419)
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0025184	Ash1l (MGP_CAROLIEiJ_G0025183)	Dap3 (MGP_CAROLIEiJ_G0025182)	Msto1 (MGP_CAROLIEiJ_G0025181)	MGP_CAROLIEiJ_G0025180	Syt11 (MGP_CAROLIEiJ_G0025179) #12	Rit1 (MGP_CAROLIEiJ_G0025178) #13	Khdc4 (MGP_CAROLIEiJ_G0025177) #14	Rxfp4 (MGP_CAROLIEiJ_G0025176)	Arhgef2 (MGP_CAROLIEiJ_G0025175) #16	Ssr2 (MGP_CAROLIEiJ_G0025174) #17	Ubqln4 (MGP_CAROLIEiJ_G0025173) #18	Lamtor2 (MGP_CAROLIEiJ_G0025172) #19	Rab25 (MGP_CAROLIEiJ_G0025171) #20	Mex3a (MGP_CAROLIEiJ_G0025170) #21	Lmna (MGP_CAROLIEiJ_G0025169) #22	Sema4a (MGP_CAROLIEiJ_G0025168) #23	Slc25a44 (MGP_CAROLIEiJ_G0025167) #25	Pmf1 (MGP_CAROLIEiJ_G0025166) #26	MGP_CAROLIEiJ_G0025165 #27	Paqr6 (MGP_CAROLIEiJ_G0025164) #28	Smg5 (MGP_CAROLIEiJ_G0025163) #29	Tmem79 (MGP_CAROLIEiJ_G0025162) #30	Glmp (MGP_CAROLIEiJ_G0025161) #31	Cct3 (MGP_CAROLIEiJ_G0025160) #32	Tsacc (MGP_CAROLIEiJ_G0025159) #33	MGP_CAROLIEiJ_G0025158	Rhbg (MGP_CAROLIEiJ_G0025157)	Mef2d (MGP_CAROLIEiJ_G0025156)	Iqgap3 (MGP_CAROLIEiJ_G0025155)	MGP_CAROLIEiJ_G0025154
Shrew mouse	MODERN SPECIES	17	Rusc1 (MGP_PahariEiJ_G0026629)	MGP_PahariEiJ_G0026628	Ash1l (MGP_PahariEiJ_G0026627)	Dap3 (MGP_PahariEiJ_G0026626)	MGP_PahariEiJ_G0026625	Gon4l (MGP_PahariEiJ_G0026624)	Syt11 (MGP_PahariEiJ_G0026623) #12	Rit1 (MGP_PahariEiJ_G0026622) #13	Khdc4 (MGP_PahariEiJ_G0026621) #14	Arhgef2 (MGP_PahariEiJ_G0026620) #16	Ssr2 (MGP_PahariEiJ_G0026619) #17	Ubqln4 (MGP_PahariEiJ_G0026618) #18	Lamtor2 (MGP_PahariEiJ_G0026617) #19	Rab25 (MGP_PahariEiJ_G0026616) #20	Mex3a (MGP_PahariEiJ_G0026615) #21	Lmna (MGP_PahariEiJ_G0026614) #22	Sema4a (MGP_PahariEiJ_G0026613) #23	Slc25a44 (MGP_PahariEiJ_G0026612) #25	Pmf1 (MGP_PahariEiJ_G0026611) #26	MGP_PahariEiJ_G0026609 #27	MGP_PahariEiJ_G0026610 #27	Paqr6 (MGP_PahariEiJ_G0026607) #28	Smg5 (MGP_PahariEiJ_G0026606) #29	Tmem79 (MGP_PahariEiJ_G0026605) #30	Glmp (MGP_PahariEiJ_G0026604) #31	MGP_PahariEiJ_G0026603 #32	Tsacc (MGP_PahariEiJ_G0026602) #33	MGP_PahariEiJ_G0026601	Rhbg (MGP_PahariEiJ_G0026600)	Mef2d (MGP_PahariEiJ_G0026599)	Iqgap3 (MGP_PahariEiJ_G0026598)
Rat	MODERN SPECIES	11	Pklr (ENSRNOG00000020420)	Fdps (ENSRNOG00000043377)	Ash1l (ENSRNOG00000020386)	Dap3 (ENSRNOG00000020373)	Msto1 (ENSRNOG00000020357)	Gon4l (ENSRNOG00000020297)	Syt11 (ENSRNOG00000020279) #12	Rit1 (ENSRNOG00000064584) #13	Khdc4 (ENSRNOG00000020139) #14	Arhgef2 (ENSRNOG00000020027) #16	Ssr2 (ENSRNOG00000019940) #17	Ubqln4 (ENSRNOG00000019933) #18	Lamtor2 (ENSRNOG00000019908) #19	Rab25 (ENSRNOG00000023640) #20	Mex3a (ENSRNOG00000058654) #21	Lmna (ENSRNOG00000019638) #22	Sema4a (ENSRNOG00000019737) #23	Slc25a44 (ENSRNOG00000025269) #25	Pmf1 (ENSRNOG00000019620) #26	Bglap (ENSRNOG00000019607) #27	Paqr6 (ENSRNOG00000026059) #28	Smg5 (ENSRNOG00000019590) #29	Tmem79 (ENSRNOG00000019414) #30	Glmp (ENSRNOG00000019281) #31	Cct3 (ENSRNOG00000019090) #32	Tsacc (ENSRNOG00000037552) #33	Rhbg (ENSRNOG00000019412)	Mef2d (ENSRNOG00000031778)	Iqgap3 (ENSRNOG00000027894)	Ttc24 (ENSRNOG00000028765)	Naxe (ENSRNOG00000019201)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.x #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.x #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Chinese hamster chok1gshd	MODERN SPECIES	352	Rusc1 (ENSCGRG00001009459)	Ash1l (ENSCGRG00001011192)	Dap3 (ENSCGRG00001022521)	Msto1 (ENSCGRG00001015681)	Gon4l (ENSCGRG00001023253)	Syt11 (ENSCGRG00001023824) #12	Rit1 (ENSCGRG00001004542) #13	Khdc4 (ENSCGRG00001012564) #14	Rxfp4 (ENSCGRG00001002374)	Arhgef2 (ENSCGRG00001006987) #16	Ssr2 (ENSCGRG00001006822) #17	Ubqln4 (ENSCGRG00001019653) #18	Lamtor2 (ENSCGRG00001008748) #19	Rab25 (ENSCGRG00001017341) #20	Mex3a (ENSCGRG00001000412) #21	Lmna (ENSCGRG00001003129) #22	Sema4a (ENSCGRG00001020918) #23	Slc25a44 (ENSCGRG00001021651) #25	Pmf1 (ENSCGRG00001010918) #26	ENSCGRG00001014532 #27	Paqr6 (ENSCGRG00001016796) #28	Smg5 (ENSCGRG00001006336) #29	Tmem79 (ENSCGRG00001024551) #30	Glmp (ENSCGRG00001007094) #31	Cct3 (ENSCGRG00001015935) #32	Tsacc (ENSCGRG00001019825) #33	Rhbg (ENSCGRG00001000730)	Mef2d (ENSCGRG00001013661)	Iqgap3 (ENSCGRG00001021083)	ENSCGRG00001013450	Naxe (ENSCGRG00001023331)
Golden Hamster	MODERN SPECIES	714	Pklr (ENSMAUG00000012808)	Fdps (ENSMAUG00000020872)	ENSMAUG00000017088	Ash1l (ENSMAUG00000000702)	Msto1 (ENSMAUG00000020345)	ENSMAUG00000000631	ENSMAUG00000013419 #12	Rit1 (ENSMAUG00000000572) #13	Khdc4 (ENSMAUG00000019676) #14	ENSMAUG00000013645 #16	ENSMAUG00000019940 #16	Ssr2 (ENSMAUG00000021161) #17	Ubqln4 (ENSMAUG00000007686) #18	Lamtor2 (ENSMAUG00000000547) #19	Mex3a (ENSMAUG00000012601) #21	Lmna (ENSMAUG00000012838) #22	ENSMAUG00000017061 #23	Slc25a44 (ENSMAUG00000021047) #25	Pmf1 (ENSMAUG00000019629) #26	ENSMAUG00000015288 #27	Paqr6 (ENSMAUG00000010297) #28	Smg5 (ENSMAUG00000010381) #29	Tmem79 (ENSMAUG00000014791) #30	ENSMAUG00000014449 #32	Tsacc (ENSMAUG00000016723) #33	Rhbg (ENSMAUG00000009341)	Mef2d (ENSMAUG00000016452)	Iqgap3 (ENSMAUG00000008455)	ENSMAUG00000018760	Naxe (ENSMAUG00000018064)	ENSMAUG00000008406
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.x #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Prairie vole	MODERN SPECIES	8								ENSMOCG00000007816 #14	ENSMOCG00000019234 #16	ENSMOCG00000020991 #16	Ssr2 (ENSMOCG00000001890) #17	ENSMOCG00000013140 #18	Lamtor2 (ENSMOCG00000018988) #19	Rab25 (ENSMOCG00000010953) #20	Mex3a (ENSMOCG00000017881) #21	Lmna (ENSMOCG00000011854) #22	Sema4a (ENSMOCG00000022467) #23	Slc25a44 (ENSMOCG00000014671) #25	ENSMOCG00000018426 #26	ENSMOCG00000019680 #27	Paqr6 (ENSMOCG00000006437) #28	Smg5 (ENSMOCG00000016590) #29	Tmem79 (ENSMOCG00000017414) #30	Glmp (ENSMOCG00000009096) #31	Cct3 (ENSMOCG00000010144) #32	Tsacc (ENSMOCG00000013419) #33	ENSMOCG00000022002	Rhbg (ENSMOCG00000005326)	ENSMOCG00000008030	Mef2d (ENSMOCG00000003757)	Iqgap3 (ENSMOCG00000020658)
Northern American deer mouse	MODERN SPECIES	19	Rusc1 (ENSPEMG00000018232)	Ash1l (ENSPEMG00000006789)	ENSPEMG00000019185	Msto1 (ENSPEMG00000016178)	Gon4l (ENSPEMG00000017252)	Syt11 (ENSPEMG00000003809) #12	Rit1 (ENSPEMG00000030433) #13	Khdc4 (ENSPEMG00000007794) #14	Rxfp4 (ENSPEMG00000011662)	Arhgef2 (ENSPEMG00000002997) #16	Ssr2 (ENSPEMG00000012464) #17	Ubqln4 (ENSPEMG00000016759) #18	Lamtor2 (ENSPEMG00000009818) #19	Rab25 (ENSPEMG00000007548) #20	Mex3a (ENSPEMG00000019014) #21	Lmna (ENSPEMG00000015821) #22	Sema4a (ENSPEMG00000015516) #23	Slc25a44 (ENSPEMG00000013362) #25	Pmf1 (ENSPEMG00000012625) #26	ENSPEMG00000025586 #27	Paqr6 (ENSPEMG00000002777) #28	Smg5 (ENSPEMG00000001819) #29	Tmem79 (ENSPEMG00000007739) #30	Glmp (ENSPEMG00000013529) #31	Cct3 (ENSPEMG00000015732) #32	Tsacc (ENSPEMG00000014593) #33	Rhbg (ENSPEMG00000011996)	Mef2d (ENSPEMG00000019035)	Iqgap3 (ENSPEMG00000016406)	ENSPEMG00000017615	Naxe (ENSPEMG00000018271)
Upper Galilee mountains blind mole rat	MODERN SPECIES	497	Rusc1 (ENSNGAG00000008260)	Ash1l (ENSNGAG00000021986)	Dap3 (ENSNGAG00000014173)	Msto1 (ENSNGAG00000022769)	Gon4l (ENSNGAG00000020844)	Syt11 (ENSNGAG00000013529) #12	Rit1 (ENSNGAG00000013104) #13	Khdc4 (ENSNGAG00000012421) #14	ENSNGAG00000011350 #16	ENSNGAG00000009107 #16	Ssr2 (ENSNGAG00000002859) #17	Ubqln4 (ENSNGAG00000020831) #18	Lamtor2 (ENSNGAG00000020249) #19	Rab25 (ENSNGAG00000019999) #20	Mex3a (ENSNGAG00000019587) #21	Lmna (ENSNGAG00000017368) #22	Sema4a (ENSNGAG00000012750) #23	Slc25a44 (ENSNGAG00000010575) #25	Pmf1 (ENSNGAG00000007750) #26	ENSNGAG00000001625 #27	Paqr6 (ENSNGAG00000000673) #28	Smg5 (ENSNGAG00000020706) #29	Tmem79 (ENSNGAG00000020294) #30	Glmp (ENSNGAG00000019347) #31	Cct3 (ENSNGAG00000016875) #32	Rhbg (ENSNGAG00000019322)	Mef2d (ENSNGAG00000016036)	Iqgap3 (ENSNGAG00000020879)	Naxe (ENSNGAG00000020268)	ENSNGAG00000019958	Hapln2 (ENSNGAG00000019736)
Lesser Egyptian jerboa	MODERN SPECIES	141	Ash1l (ENSJJAG00000017942)	Dap3 (ENSJJAG00000010235)	Msto1 (ENSJJAG00000019140)	ENSJJAG00000013614	ENSJJAG00000010636 #12	Rit1 (ENSJJAG00000023411) #13	ENSJJAG00000020627 #14	Rxfp4 (ENSJJAG00000013686)	ENSJJAG00000017646 #16	ENSJJAG00000016067 #16	Ssr2 (ENSJJAG00000024209) #17	Ubqln4 (ENSJJAG00000002118) #18	ENSJJAG00000021135 #19	Rab25 (ENSJJAG00000021013) #20	Mex3a (ENSJJAG00000020484) #21	Lmna (ENSJJAG00000019904) #22	Sema4a (ENSJJAG00000016229) #23	Slc25a44 (ENSJJAG00000001462) #25	Pmf1 (ENSJJAG00000013470) #26	ENSJJAG00000000652 #27	Paqr6 (ENSJJAG00000001367) #28	Smg5 (ENSJJAG00000022763) #29	Tmem79 (ENSJJAG00000023610) #30	ENSJJAG00000019201	Cct3 (ENSJJAG00000013939) #32	ENSJJAG00000017067	Mef2d (ENSJJAG00000011790)	Iqgap3 (ENSJJAG00000000649)	ENSJJAG00000021021	Naxe (ENSJJAG00000023933)	Hapln2 (ENSJJAG00000016470)
Kangaroo rat	MODERN SPECIES	345	ENSDORG00000024404	ENSDORG00000025813	Ash1l (ENSDORG00000025575)	Dap3 (ENSDORG00000003596)	Msto1 (ENSDORG00000029541)	Gon4l (ENSDORG00000003598)	Syt11 (ENSDORG00000023709) #12	Rit1 (ENSDORG00000014601) #13	Khdc4 (ENSDORG00000014602) #14	Arhgef2 (ENSDORG00000012162) #16	ENSDORG00000010536 #17	Ubqln4 (ENSDORG00000010538) #18	Lamtor2 (ENSDORG00000002923) #19	Rab25 (ENSDORG00000002922) #20	Mex3a (ENSDORG00000002921) #21	Lmna (ENSDORG00000002470) #22	Sema4a (ENSDORG00000008821) #23
Rodentia_A	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Sciuridae	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132.e #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Marmotini	ANCESTRAL SPECIES	33	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132.e #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Marmotini_b	ANCESTRAL SPECIES	37	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132.e #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Squirrel	MODERN SPECIES	180	RUSC1 (ENSSTOG00000004516)	ASH1L (ENSSTOG00000019952)	DAP3 (ENSSTOG00000004627)	MSTO1 (ENSSTOG00000004655)	ENSSTOG00000004664	SYT11 (ENSSTOG00000004720) #12	RIT1 (ENSSTOG00000021028) #13	KHDC4 (ENSSTOG00000004732) #14	RXFP4 (ENSSTOG00000000616)	ARHGEF2 (ENSSTOG00000000620) #16	SSR2 (ENSSTOG00000028971) #17	UBQLN4 (ENSSTOG00000020043) #18	LAMTOR2 (ENSSTOG00000023389) #19	RAB25 (ENSSTOG00000000634) #20	MEX3A (ENSSTOG00000024275) #21	LMNA (ENSSTOG00000001758) #22	SEMA4A (ENSSTOG00000028050) #23	SLC25A44 (ENSSTOG00000001764) #25	PMF1 (ENSSTOG00000001768) #26	ENSSTOG00000034466	BGLAP (ENSSTOG00000027908) #27	PAQR6 (ENSSTOG00000001772) #28	SMG5 (ENSSTOG00000001780) #29	TMEM79 (ENSSTOG00000026140) #30	GLMP (ENSSTOG00000015763) #31	CCT3 (ENSSTOG00000001798) #32	TSACC (ENSSTOG00000001810) #33	RHBG (ENSSTOG00000028396)	MEF2D (ENSSTOG00000025590)	IQGAP3 (ENSSTOG00000016076)	ENSSTOG00000016083
Arctic ground squirrel	MODERN SPECIES	309	RUSC1 (ENSUPAG00010002787)	ASH1L (ENSUPAG00010002818)	ENSUPAG00010002886	MSTO1 (ENSUPAG00010002943)	ENSUPAG00010002975	SYT11 (ENSUPAG00010003045) #12	ENSUPAG00010003055 #13	KHDC4 (ENSUPAG00010003067) #14	ENSUPAG00010003101 #15	ARHGEF2 (ENSUPAG00010003114) #16	SSR2 (ENSUPAG00010003598) #17	UBQLN4 (ENSUPAG00010003613) #18	LAMTOR2 (ENSUPAG00010003634) #19	RAB25 (ENSUPAG00010003640) #20	MEX3A (ENSUPAG00010003653) #21	LMNA (ENSUPAG00010003669) #22	SEMA4A (ENSUPAG00010003712) #23	SLC25A44 (ENSUPAG00010004013) #25	PMF1 (ENSUPAG00010004034) #26	BGLAP (ENSUPAG00010004045) #27	ENSUPAG00010004061 #28	SMG5 (ENSUPAG00010004091) #29	TMEM79 (ENSUPAG00010004129) #30	GLMP (ENSUPAG00010004142) #31	CCT3 (ENSUPAG00010004189) #32	TSACC (ENSUPAG00010004234) #33	RHBG (ENSUPAG00010004243)	MEF2D (ENSUPAG00010004263)	IQGAP3 (ENSUPAG00010004467)	ENSUPAG00010004535	NAXE (ENSUPAG00010004540)
Alpin marmot	MODERN SPECIES	85	ENSMMMG00000014387	ASH1L (ENSMMMG00000014324)	DAP3 (ENSMMMG00000014245)	MSTO1 (ENSMMMG00000014213)	ENSMMMG00000014163	SYT11 (ENSMMMG00000014151) #12	ENSMMMG00000014145 #13	KHDC4 (ENSMMMG00000014104) #14	RXFP4 (ENSMMMG00000014101)	ARHGEF2 (ENSMMMG00000013899) #16	SSR2 (ENSMMMG00000013889) #17	UBQLN4 (ENSMMMG00000013874) #18	LAMTOR2 (ENSMMMG00000013864) #19	RAB25 (ENSMMMG00000013857) #20	MEX3A (ENSMMMG00000013855) #21	LMNA (ENSMMMG00000013831) #22	SEMA4A (ENSMMMG00000013785) #23	SLC25A44 (ENSMMMG00000013773) #25	ENSMMMG00000013758	BGLAP (ENSMMMG00000013734) #27	PAQR6 (ENSMMMG00000013724) #28	SMG5 (ENSMMMG00000013706) #29	TMEM79 (ENSMMMG00000013693) #30	GLMP (ENSMMMG00000013644) #31	CCT3 (ENSMMMG00000013571) #32	TSACC (ENSMMMG00000013564) #33	RHBG (ENSMMMG00000013553)	ENSMMMG00000013541	IQGAP3 (ENSMMMG00000013468)	ENSMMMG00000013455	NAXE (ENSMMMG00000013443)
Eurasian red squirrel	MODERN SPECIES		FDPS (ENSSVLG00005000103)	RUSC1 (ENSSVLG00005000107)	ENSSVLG00005000118	MSTO1 (ENSSVLG00005000136)	ENSSVLG00005000147	ENSSVLG00005000171 #12	ENSSVLG00005000188 #13	KHDC4 (ENSSVLG00005000224) #14	RXFP4 (ENSSVLG00005000258)	ARHGEF2 (ENSSVLG00005000357) #16	SSR2 (ENSSVLG00005000552) #17	UBQLN4 (ENSSVLG00005000591) #18	LAMTOR2 (ENSSVLG00005000628) #19	RAB25 (ENSSVLG00005000653) #20	MEX3A (ENSSVLG00005000673) #21	LMNA (ENSSVLG00005000714) #22	SEMA4A (ENSSVLG00005000802) #23	SLC25A44 (ENSSVLG00005000872) #25	PMF1 (ENSSVLG00005000891) #26	BGLAP (ENSSVLG00005000913) #27	PAQR6 (ENSSVLG00005000936) #28	SMG5 (ENSSVLG00005000972) #29	ENSSVLG00005000998	GLMP (ENSSVLG00005001024) #31	CCT3 (ENSSVLG00005001076) #32	TSACC (ENSSVLG00005001124) #33	RHBG (ENSSVLG00005001146)	MEF2D (ENSSVLG00005001227)	IQGAP3 (ENSSVLG00005001534)	TTC24 (ENSSVLG00005002076)	ENSSVLG00005002106
Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.z.a #32	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00960000190501
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000006300	ENSHGLG00000049863	ASH1L (ENSHGLG00000008090)	DAP3 (ENSHGLG00000013978)	MSTO1 (ENSHGLG00000018369)	ENSHGLG00000006556	SYT11 (ENSHGLG00000032288) #12	ENSHGLG00000034706 #13	KHDC4 (ENSHGLG00000010495) #14	RXFP4 (ENSHGLG00000037004)	SSR2 (ENSHGLG00000035940) #17	UBQLN4 (ENSHGLG00000003684) #18	LAMTOR2 (ENSHGLG00000036352) #19	RAB25 (ENSHGLG00000005517) #20	MEX3A (ENSHGLG00000041429) #21	ENSHGLG00000036594 #22	SEMA4A (ENSHGLG00000003587) #23	SLC25A44 (ENSHGLG00000042222) #25	ENSHGLG00000007944 #27	PAQR6 (ENSHGLG00000015640) #28	SMG5 (ENSHGLG00000019152) #29	TMEM79 (ENSHGLG00000018185) #30	GLMP (ENSHGLG00000041332) #31	ENSHGLG00000003153 #32	RHBG (ENSHGLG00000005998)	MEF2D (ENSHGLG00000019055)	IQGAP3 (ENSHGLG00000018362)	NAXE (ENSHGLG00000007354)	ENSHGLG00000041268	ENSHGLG00000011346	HAPLN2 (ENSHGLG00000003467)
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.y #32	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.z.a #32	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765
Degu	MODERN SPECIES	73	ASH1L (ENSODEG00000009920)	DAP3 (ENSODEG00000010674)	MSTO1 (ENSODEG00000011191)	ENSODEG00000010737	ENSODEG00000011008	SYT11 (ENSODEG00000010870) #12	RIT1 (ENSODEG00000010128) #13	ENSODEG00000009528 #14	ENSODEG00000019992 #15	ARHGEF2 (ENSODEG00000011373) #16	SSR2 (ENSODEG00000010659) #17	UBQLN4 (ENSODEG00000010901) #18	LAMTOR2 (ENSODEG00000010141) #19	RAB25 (ENSODEG00000009908) #20	MEX3A (ENSODEG00000009643) #21	LMNA (ENSODEG00000009369) #22	SEMA4A (ENSODEG00000009359) #23	SLC25A44 (ENSODEG00000009774) #25	PMF1 (ENSODEG00000011902) #26	BGLAP (ENSODEG00000010926) #27	PAQR6 (ENSODEG00000010747) #28	SMG5 (ENSODEG00000012237) #29	TMEM79 (ENSODEG00000012508) #30	GLMP (ENSODEG00000009800) #31	ENSODEG00000009974 #32	RHBG (ENSODEG00000009136)	MEF2D (ENSODEG00000010190)	IQGAP3 (ENSODEG00000010076)	ENSODEG00000009606	ENSODEG00000010121	ENSODEG00000010437
Long-tailed chinchilla	MODERN SPECIES	252	FDPS (ENSCLAG00000005410)	RUSC1 (ENSCLAG00000005579)	ASH1L (ENSCLAG00000004536)	DAP3 (ENSCLAG00000005599)	MSTO1 (ENSCLAG00000006273)	ENSCLAG00000006556	SYT11 (ENSCLAG00000013172) #12	RIT1 (ENSCLAG00000013305) #13	KHDC4 (ENSCLAG00000010544) #14	ARHGEF2 (ENSCLAG00000013596) #16	SSR2 (ENSCLAG00000003363) #17	UBQLN4 (ENSCLAG00000003519) #18	LAMTOR2 (ENSCLAG00000003700) #19	RAB25 (ENSCLAG00000003784) #20	MEX3A (ENSCLAG00000003842) #21	LMNA (ENSCLAG00000003894) #22	SEMA4A (ENSCLAG00000005297) #23	SLC25A44 (ENSCLAG00000005587) #25	PMF1 (ENSCLAG00000003672) #26	BGLAP (ENSCLAG00000003710) #27	PAQR6 (ENSCLAG00000003899) #28	SMG5 (ENSCLAG00000003983) #29	TMEM79 (ENSCLAG00000004142) #30	GLMP (ENSCLAG00000004192) #31	ENSCLAG00000004359 #32	RHBG (ENSCLAG00000004625)	MEF2D (ENSCLAG00000004702)	IQGAP3 (ENSCLAG00000004927)	ENSCLAG00000002793	NAXE (ENSCLAG00000002832)	ENSCLAG00000002967
Guinea pig	MODERN SPECIES	10	RUSC1 (ENSCPOG00000032934)	ASH1L (ENSCPOG00000004801)	DAP3 (ENSCPOG00000030924)	MSTO1 (ENSCPOG00000004857)	ENSCPOG00000004859	SYT11 (ENSCPOG00000004866) #12	RIT1 (ENSCPOG00000004868) #13	KHDC4 (ENSCPOG00000004870) #14	ENSCPOG00000032356	ARHGEF2 (ENSCPOG00000025396) #16	SSR2 (ENSCPOG00000023729) #17	UBQLN4 (ENSCPOG00000002467) #18	LAMTOR2 (ENSCPOG00000032238) #19	RAB25 (ENSCPOG00000002472) #20	MEX3A (ENSCPOG00000020219) #21	LMNA (ENSCPOG00000023214) #22	SEMA4A (ENSCPOG00000015694) #23	SLC25A44 (ENSCPOG00000021129) #25	PMF1 (ENSCPOG00000015695) #26	BGLAP (ENSCPOG00000040505) #27	PAQR6 (ENSCPOG00000019726) #28	SMG5 (ENSCPOG00000015696) #29	TMEM79 (ENSCPOG00000033881) #30	GLMP (ENSCPOG00000032634) #31	CCT3 (ENSCPOG00000009131) #32	RHBG (ENSCPOG00000011135)	MEF2D (ENSCPOG00000036656)	IQGAP3 (ENSCPOG00000005361)	ENSCPOG00000012272	NAXE (ENSCPOG00000024878)	ENSCPOG00000013701
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01090000260051.b.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Pika	MODERN SPECIES	3341										ARHGEF2 (ENSOPRG00000002782) #16	SSR2 (ENSOPRG00000002830) #17	UBQLN4 (ENSOPRG00000002851) #18	LAMTOR2 (ENSOPRG00000002877) #19	RAB25 (ENSOPRG00000002894) #20	MEX3A (ENSOPRG00000002937) #21	LMNA (ENSOPRG00000002966) #22	SEMA4A (ENSOPRG00000002992) #23	SLC25A44 (ENSOPRG00000003022) #25
Rabbit	MODERN SPECIES	4	ENSOCUG00000034353	DAP3 (ENSOCUG00000004785)	MSTO1 (ENSOCUG00000010186)	ENSOCUG00000010191	ENSOCUG00000026145	SYT11 (ENSOCUG00000027971) #12	RIT1 (ENSOCUG00000006377) #13	KHDC4 (ENSOCUG00000010430) #14	ENSOCUG00000026819 #15	ARHGEF2 (ENSOCUG00000001937) #16	SSR2 (ENSOCUG00000008455) #17	UBQLN4 (ENSOCUG00000007156) #18	LAMTOR2 (ENSOCUG00000027994) #19	RAB25 (ENSOCUG00000005634) #20	ENSOCUG00000005640 #21	LMNA (ENSOCUG00000010011) #22	SEMA4A (ENSOCUG00000001326) #23	SLC25A44 (ENSOCUG00000012861) #25	PMF1 (ENSOCUG00000012870) #26	BGLAP (ENSOCUG00000025958) #27	SMG5 (ENSOCUG00000012886) #29	ENSOCUG00000012899 #30	GLMP (ENSOCUG00000026609) #31	CCT3 (ENSOCUG00000000137) #32	TSACC (ENSOCUG00000029754) #33	RHBG (ENSOCUG00000016130)	MEF2D (ENSOCUG00000012173)	TTC24 (ENSOCUG00000023015)	IQGAP3 (ENSOCUG00000012177)	NAXE (ENSOCUG00000016208)	GPATCH4 (ENSOCUG00000025781)
Tree shrew	MODERN SPECIES	3906										RXFP4 (ENSTBEG00000001002)	ARHGEF2 (ENSTBEG00000001641) #16	SSR2 (ENSTBEG00000002867) #17	UBQLN4 (ENSTBEG00000003066) #18	LAMTOR2 (ENSTBEG00000003768) #19	RAB25 (ENSTBEG00000004142) #20	LMNA (ENSTBEG00000005069) #22
Primates	ANCESTRAL SPECIES	7	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00940000156698	ENSGT00390000016256.l	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000156698	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000156698	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000156698	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067.c.b	ENSGT00530000064067.c.a	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00530000064067.d	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067.c.a	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Pan	ANCESTRAL SPECIES		ENSGT00940000156698	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067.c.a	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Chimpanzee	MODERN SPECIES		CLDN6 (ENSPTRG00000045058)	YY1AP1 (ENSPTRG00000001429)	DAP3 (ENSPTRG00000001430)	MSTO1 (ENSPTRG00000001428)	GON4L (ENSPTRG00000001433)	SYT11 (ENSPTRG00000001436) #12	RIT1 (ENSPTRG00000001437) #13	KHDC4 (ENSPTRG00000001438) #14	RXFP4 (ENSPTRG00000001439)	ARHGEF2 (ENSPTRG00000001441) #16	SSR2 (ENSPTRG00000001442) #17	UBQLN4 (ENSPTRG00000001444) #18	LAMTOR2 (ENSPTRG00000001445) #19	RAB25 (ENSPTRG00000001446) #20	MEX3A (ENSPTRG00000030373) #21	LMNA (ENSPTRG00000001447) #22	SEMA4A (ENSPTRG00000001448) #23	SLC25A44 (ENSPTRG00000001449) #25	PMF1 (ENSPTRG00000001450) #26	BGLAP (ENSPTRG00000041553) #27	PAQR6 (ENSPTRG00000001451) #28	SMG5 (ENSPTRG00000023925) #29	TMEM79 (ENSPTRG00000001453) #30	GLMP (ENSPTRG00000001455) #31	CCT3 (ENSPTRG00000001456) #32	TSACC (ENSPTRG00000001457)	RHBG (ENSPTRG00000001458)	ENSPTRG00000001459	MEF2D (ENSPTRG00000001460)	IQGAP3 (ENSPTRG00000001461)	TTC24 (ENSPTRG00000001462)
Bonobo	MODERN SPECIES		YY1AP1 (ENSPPAG00000041804)	DAP3 (ENSPPAG00000030901)	ENSPPAG00000035270	ENSPPAG00000028555	GON4L (ENSPPAG00000030169)	SYT11 (ENSPPAG00000039359) #12	RIT1 (ENSPPAG00000043026) #13	KHDC4 (ENSPPAG00000028145) #14	RXFP4 (ENSPPAG00000011483)	ARHGEF2 (ENSPPAG00000043187) #16	ENSPPAG00000036187 #17	UBQLN4 (ENSPPAG00000040262) #18	LAMTOR2 (ENSPPAG00000037502) #19	RAB25 (ENSPPAG00000031127) #20	MEX3A (ENSPPAG00000016303) #21	LMNA (ENSPPAG00000037857) #22	SEMA4A (ENSPPAG00000043828) #23	SLC25A44 (ENSPPAG00000027895) #25	ENSPPAG00000034289	BGLAP (ENSPPAG00000042608) #27	ENSPPAG00000027236 #28	SMG5 (ENSPPAG00000011996) #29	TMEM79 (ENSPPAG00000042037) #30	GLMP (ENSPPAG00000028749) #31	CCT3 (ENSPPAG00000042161) #32	TSACC (ENSPPAG00000040738) #33	RHBG (ENSPPAG00000032922)	ENSPPAG00000028566	MEF2D (ENSPPAG00000038584)	IQGAP3 (ENSPPAG00000040557)	TTC24 (ENSPPAG00000031347)
Human	MODERN SPECIES		ASH1L (ENSG00000116539)	MSTO1 (ENSG00000125459)	YY1AP1 (ENSG00000163374)	DAP3 (ENSG00000132676)	GON4L (ENSG00000116580)	SYT11 (ENSG00000132718) #12	RIT1 (ENSG00000143622) #13	KHDC4 (ENSG00000132680) #14	RXFP4 (ENSG00000173080)	ARHGEF2 (ENSG00000116584) #16	SSR2 (ENSG00000163479) #17	UBQLN4 (ENSG00000160803) #18	LAMTOR2 (ENSG00000116586) #19	RAB25 (ENSG00000132698) #20	MEX3A (ENSG00000254726) #21	LMNA (ENSG00000160789) #22	SEMA4A (ENSG00000196189) #23	SLC25A44 (ENSG00000160785) #25	PMF1-BGLAP (ENSG00000260238)	PMF1 (ENSG00000160783) #26	BGLAP (ENSG00000242252) #27	PAQR6 (ENSG00000160781) #28	SMG5 (ENSG00000198952) #29	TMEM79 (ENSG00000163472) #30	GLMP (ENSG00000198715) #31	VHLL (ENSG00000189030)	CCT3 (ENSG00000163468) #32	TSACC (ENSG00000163467) #33	RHBG (ENSG00000132677)	MEF2D (ENSG00000116604)	IQGAP3 (ENSG00000183856)
Gorilla	MODERN SPECIES		YY1AP1 (ENSGGOG00000026024)	DAP3 (ENSGGOG00000007618)	ENSGGOG00000040593	GON4L (ENSGGOG00000000477)	ENSGGOG00000025183	SYT11 (ENSGGOG00000010111) #12	RIT1 (ENSGGOG00000001461) #13	KHDC4 (ENSGGOG00000024568) #14	RXFP4 (ENSGGOG00000034869)	ARHGEF2 (ENSGGOG00000005907) #16	SSR2 (ENSGGOG00000024769) #17	ENSGGOG00000008916 #18	LAMTOR2 (ENSGGOG00000006818) #19	RAB25 (ENSGGOG00000006821) #20	MEX3A (ENSGGOG00000004513) #21	LMNA (ENSGGOG00000000813) #22	SEMA4A (ENSGGOG00000000814) #23	SLC25A44 (ENSGGOG00000010910) #25	PMF1 (ENSGGOG00000037793) #26	BGLAP (ENSGGOG00000010916) #27	ENSGGOG00000010923 #28	SMG5 (ENSGGOG00000010932) #29	TMEM79 (ENSGGOG00000014240) #30	GLMP (ENSGGOG00000014243) #31	CCT3 (ENSGGOG00000023333) #32	TSACC (ENSGGOG00000008582) #33	RHBG (ENSGGOG00000007638)	ENSGGOG00000034972	MEF2D (ENSGGOG00000008534)	IQGAP3 (ENSGGOG00000002548)	TTC24 (ENSGGOG00000012558)
Orangutan	MODERN SPECIES		YY1AP1 (ENSPPYG00000000743)	DAP3 (ENSPPYG00000000742)	MSTO1 (ENSPPYG00000000740)	MSTO2P (ENSPPYG00000010648)	GON4L (ENSPPYG00000000739)	SYT11 (ENSPPYG00000039531) #12	RIT1 (ENSPPYG00000000737) #13	KHDC4 (ENSPPYG00000000736) #14	RXFP4 (ENSPPYG00000000735)	ARHGEF2 (ENSPPYG00000000734) #16	SSR2 (ENSPPYG00000000733) #17	UBQLN4 (ENSPPYG00000000732) #18	LAMTOR2 (ENSPPYG00000000731) #19	RAB25 (ENSPPYG00000000730) #20	MEX3A (ENSPPYG00000000729) #21	LMNA (ENSPPYG00000000728) #22	SEMA4A (ENSPPYG00000000727) #23	SLC25A44 (ENSPPYG00000000726) #25	ENSPPYG00000000725	PAQR6 (ENSPPYG00000000724) #28	SMG5 (ENSPPYG00000000723) #29	TMEM79 (ENSPPYG00000000722) #30	GLMP (ENSPPYG00000000721) #31	CCT3 (ENSPPYG00000010639) #32	ENSPPYG00000031428 #33	RHBG (ENSPPYG00000000718)	ENSPPYG00000000717	MEF2D (ENSPPYG00000000716)	IQGAP3 (ENSPPYG00000000715)	TTC24 (ENSPPYG00000000714)	NAXE (ENSPPYG00000000713)
Gibbon	MODERN SPECIES	2	ASH1L (ENSNLEG00000012163)	ENSNLEG00000012222	YY1AP1 (ENSNLEG00000012206)	DAP3 (ENSNLEG00000012211)	ENSNLEG00000031265	GON4L (ENSNLEG00000035449)	SYT11 (ENSNLEG00000012224) #12	RIT1 (ENSNLEG00000012228) #13	KHDC4 (ENSNLEG00000012238) #14	ENSNLEG00000012262	ARHGEF2 (ENSNLEG00000012264) #16	SSR2 (ENSNLEG00000032588) #17	LAMTOR2 (ENSNLEG00000035591) #19	RAB25 (ENSNLEG00000012323) #20	MEX3A (ENSNLEG00000012329) #21	LMNA (ENSNLEG00000012331) #22	SEMA4A (ENSNLEG00000012367) #23	ENSNLEG00000012408 #25	ENSNLEG00000033074 #26	BGLAP (ENSNLEG00000012409) #27	ENSNLEG00000012423 #28	SMG5 (ENSNLEG00000012439) #29	TMEM79 (ENSNLEG00000012481) #30	GLMP (ENSNLEG00000032477) #31	CCT3 (ENSNLEG00000012509) #32	TSACC (ENSNLEG00000012582) #33	RHBG (ENSNLEG00000012589)	ENSNLEG00000012606	ENSNLEG00000028307	ENSNLEG00000012625	TTC24 (ENSNLEG00000012653)
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00940000156698	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000156698	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00530000064067.h	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067.g.a	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463
Macaca	ANCESTRAL SPECIES		ENSGT00390000016256.l.a.a	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067.g.a	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00990000210932	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Pig-tailed macaque	MODERN SPECIES	262	ASH1L (ENSMNEG00000004882)	MSTO1 (ENSMNEG00000030351)	YY1AP1 (ENSMNEG00000038421)	DAP3 (ENSMNEG00000043408)	GON4L (ENSMNEG00000022837)	SYT11 (ENSMNEG00000039442) #12	RIT1 (ENSMNEG00000039545) #13	KHDC4 (ENSMNEG00000005131) #14	RXFP4 (ENSMNEG00000025991)	ARHGEF2 (ENSMNEG00000030024) #16	ENSMNEG00000036868 #17	UBQLN4 (ENSMNEG00000028661) #18	LAMTOR2 (ENSMNEG00000044990) #19	RAB25 (ENSMNEG00000004251) #20	MEX3A (ENSMNEG00000031569) #21	LMNA (ENSMNEG00000045506) #22	SEMA4A (ENSMNEG00000027619) #23	ENSMNEG00000041520	SLC25A44 (ENSMNEG00000032439) #25	PMF1 (ENSMNEG00000030198) #26	BGLAP (ENSMNEG00000014728) #27	ENSMNEG00000037204 #28	SMG5 (ENSMNEG00000044425) #29	TMEM79 (ENSMNEG00000040540) #30	GLMP (ENSMNEG00000034996) #31	CCT3 (ENSMNEG00000027103) #32	TSACC (ENSMNEG00000030389) #33	RHBG (ENSMNEG00000032887)	ENSMNEG00000043633	MEF2D (ENSMNEG00000029442)	IQGAP3 (ENSMNEG00000043986)
Macaca_a	ANCESTRAL SPECIES		ENSGT00390000016256.l.a.a	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067.g.b	ENSGT00530000064067.g.a	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000005131 #31	ENSGT00390000002390.b #30	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00990000210932	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Rhesus	MODERN SPECIES		ENSMMUG00000009981	ASH1L (ENSMMUG00000023146)	DAP3 (ENSMMUG00000018080)	ENSMMUG00000062397	GON4L (ENSMMUG00000009987)	SYT11 (ENSMMUG00000021312) #12	RIT1 (ENSMMUG00000053454) #13	KHDC4 (ENSMMUG00000004648) #14	RXFP4 (ENSMMUG00000005090) #15	ARHGEF2 (ENSMMUG00000005092) #16	SSR2 (ENSMMUG00000013495) #17	UBQLN4 (ENSMMUG00000009983) #18	LAMTOR2 (ENSMMUG00000012126) #19	RAB25 (ENSMMUG00000022306) #20	MEX3A (ENSMMUG00000052160) #21	LMNA (ENSMMUG00000016096) #22	ENSMMUG00000037731	SEMA4A (ENSMMUG00000004901) #23	BGLAP (ENSMMUG00000004902) #25	PAQR6 (ENSMMUG00000000085) #28	SMG5 (ENSMMUG00000000090) #29	TMEM79 (ENSMMUG00000047929) #30	GLMP (ENSMMUG00000000092) #31	VHLL (ENSMMUG00000064443)	CCT3 (ENSMMUG00000019034) #32	TSACC (ENSMMUG00000051030) #33	RHBG (ENSMMUG00000017965)	ENSMMUG00000017966	ENSMMUG00000057120	MEF2D (ENSMMUG00000016696)	IQGAP3 (ENSMMUG00000002621)
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000050889	ENSMFAG00000044446	ENSMFAG00000056171	DAP3 (ENSMFAG00000031112)	MSTO1 (ENSMFAG00000031664)	GON4L (ENSMFAG00000035960)	SYT11 (ENSMFAG00000039413) #12	RIT1 (ENSMFAG00000054543) #13	KHDC4 (ENSMFAG00000003201) #14	ENSMFAG00000029955 #15	ARHGEF2 (ENSMFAG00000034906) #16	SSR2 (ENSMFAG00000040060) #17	LAMTOR2 (ENSMFAG00000018166) #19	RAB25 (ENSMFAG00000000115) #20	MEX3A (ENSMFAG00000000628) #21	LMNA (ENSMFAG00000045463) #22	ENSMFAG00000054546	SEMA4A (ENSMFAG00000037487) #23	SLC25A44 (ENSMFAG00000003800) #25	PMF1 (ENSMFAG00000031299) #26	BGLAP (ENSMFAG00000056045) #27	ENSMFAG00000043399 #28	TMEM79 (ENSMFAG00000002046) #30	SMG5 (ENSMFAG00000045357) #29	CCT3 (ENSMFAG00000033146) #32	TSACC (ENSMFAG00000036557) #33	RHBG (ENSMFAG00000040010)	ENSMFAG00000005400	MEF2D (ENSMFAG00000030808)	IQGAP3 (ENSMFAG00000035349)	TTC24 (ENSMFAG00000036161)
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00530000064067.h	ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067.g.a	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463
Olive baboon	MODERN SPECIES		ASH1L (ENSPANG00000004959)	MSTO1 (ENSPANG00000006654)	YY1AP1 (ENSPANG00000029721)	DAP3 (ENSPANG00000001758)	GON4L (ENSPANG00000011456)	SYT11 (ENSPANG00000018152) #12	RIT1 (ENSPANG00000035332) #13	KHDC4 (ENSPANG00000011455) #14	ENSPANG00000004167 #15	ARHGEF2 (ENSPANG00000006851) #16	SSR2 (ENSPANG00000005571) #17	UBQLN4 (ENSPANG00000001757) #18	LAMTOR2 (ENSPANG00000032414) #19	RAB25 (ENSPANG00000003113) #20	MEX3A (ENSPANG00000020303) #21	LMNA (ENSPANG00000003882) #22	SEMA4A (ENSPANG00000016075) #23	ENSPANG00000041668	SLC25A44 (ENSPANG00000008735) #25	PMF1 (ENSPANG00000010692) #26	BGLAP (ENSPANG00000023523) #27	PAQR6 (ENSPANG00000008734) #28	SMG5 (ENSPANG00000011201) #29	TMEM79 (ENSPANG00000011454) #30	GLMP (ENSPANG00000018021) #31	ENSPANG00000003881	CCT3 (ENSPANG00000026114) #32	TSACC (ENSPANG00000019713) #33	RHBG (ENSPANG00000015205)	ENSPANG00000024517	MEF2D (ENSPANG00000014079)
Cercopithecinae_d	ANCESTRAL SPECIES	33		ENSGT00390000016256.l.b	ENSGT00390000015248	ENSGT00530000064067.g.a	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00990000210932	ENSGT00940000159463
Drill	MODERN SPECIES	1097					GON4L (ENSMLEG00000039636)	SYT11 (ENSMLEG00000034240) #12	RIT1 (ENSMLEG00000030499) #13	KHDC4 (ENSMLEG00000036924) #14	RXFP4 (ENSMLEG00000000539)	ARHGEF2 (ENSMLEG00000038613) #16	SSR2 (ENSMLEG00000038454) #17	UBQLN4 (ENSMLEG00000036998) #18	LAMTOR2 (ENSMLEG00000020600) #19	RAB25 (ENSMLEG00000025037) #20	MEX3A (ENSMLEG00000023495) #21	LMNA (ENSMLEG00000030821) #22	SEMA4A (ENSMLEG00000033397) #23	ENSMLEG00000037790	SLC25A44 (ENSMLEG00000019841) #25	PMF1 (ENSMLEG00000032681) #26	BGLAP (ENSMLEG00000039620) #27	PAQR6 (ENSMLEG00000038853) #28	SMG5 (ENSMLEG00000041192) #29	TMEM79 (ENSMLEG00000038027) #30	GLMP (ENSMLEG00000038171) #31	ENSMLEG00000043471	CCT3 (ENSMLEG00000036583) #32	TSACC (ENSMLEG00000015946) #33	RHBG (ENSMLEG00000039112)	ENSMLEG00000042439	MEF2D (ENSMLEG00000043192)
Sooty mangabey	MODERN SPECIES	226		YY1AP1 (ENSCATG00000042138)	DAP3 (ENSCATG00000037832)	MSTO1 (ENSCATG00000041352)	GON4L (ENSCATG00000031497)	SYT11 (ENSCATG00000038729) #12	RIT1 (ENSCATG00000045033) #13	KHDC4 (ENSCATG00000034662) #14	RXFP4 (ENSCATG00000019172)	ARHGEF2 (ENSCATG00000029542) #16	SSR2 (ENSCATG00000030169) #17	UBQLN4 (ENSCATG00000023959) #18	LAMTOR2 (ENSCATG00000030341) #19	RAB25 (ENSCATG00000029662) #20	MEX3A (ENSCATG00000032390) #21	LMNA (ENSCATG00000033574) #22	SEMA4A (ENSCATG00000036260) #23	ENSCATG00000042076	SLC25A44 (ENSCATG00000039803) #25	PMF1 (ENSCATG00000029246) #26	BGLAP (ENSCATG00000014375) #27	PAQR6 (ENSCATG00000029286) #28	SMG5 (ENSCATG00000030539) #29	TMEM79 (ENSCATG00000041384) #30	GLMP (ENSCATG00000032524) #31	CCT3 (ENSCATG00000032970) #32	TSACC (ENSCATG00000032103) #33	RHBG (ENSCATG00000028238)	ENSCATG00000040742	MEF2D (ENSCATG00000043926)	IQGAP3 (ENSCATG00000007614)
Vervet Monkey	MODERN SPECIES	12	ASH1L (ENSCSAG00000002027)	YY1AP1 (ENSCSAG00000002031)	DAP3 (ENSCSAG00000002035)	ENSCSAG00000002038	GON4L (ENSCSAG00000002060)	SYT11 (ENSCSAG00000002072) #12	RIT1 (ENSCSAG00000002074) #13	KHDC4 (ENSCSAG00000002082) #14	ENSCSAG00000000059 #15	ARHGEF2 (ENSCSAG00000002088) #16	SSR2 (ENSCSAG00000002090) #17	UBQLN4 (ENSCSAG00000002093) #18	LAMTOR2 (ENSCSAG00000002094) #19	RAB25 (ENSCSAG00000002096) #20	MEX3A (ENSCSAG00000002097) #21	LMNA (ENSCSAG00000002099) #22	SEMA4A (ENSCSAG00000002102) #23	SLC25A44 (ENSCSAG00000002104) #25	PMF1 (ENSCSAG00000002107) #26	BGLAP (ENSCSAG00000002112) #27	PAQR6 (ENSCSAG00000002117) #28	SMG5 (ENSCSAG00000002120) #29	TMEM79 (ENSCSAG00000002125) #30	GLMP (ENSCSAG00000002123) #31	CCT3 (ENSCSAG00000002128) #32	TSACC (ENSCSAG00000002131) #33	RHBG (ENSCSAG00000002135)	MEF2D (ENSCSAG00000002143)	IQGAP3 (ENSCSAG00000002151)	TTC24 (ENSCSAG00000002156)	NAXE (ENSCSAG00000002158)
Rhinopithecus	ANCESTRAL SPECIES	59		ENSGT00390000016256.l.a.a	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b.c #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463
Golden snub-nosed monkey	MODERN SPECIES	1290												ENSRROG00000027233 #18	LAMTOR2 (ENSRROG00000045270) #19	RAB25 (ENSRROG00000028851) #20	MEX3A (ENSRROG00000029193) #21	LMNA (ENSRROG00000037915) #22	SEMA4A (ENSRROG00000043198) #23	ENSRROG00000044575	SLC25A44 (ENSRROG00000030201) #25	ENSRROG00000038103	PAQR6 (ENSRROG00000042038) #28	SMG5 (ENSRROG00000030035) #29	ENSRROG00000041912 #30
Black snub-nosed monkey	MODERN SPECIES	1571						DCDC2C (ENSRBIG00000042681)	ALLC (ENSRBIG00000032207)	KHDC4 (ENSRBIG00000013231) #14	RXFP4 (ENSRBIG00000032808)	ARHGEF2 (ENSRBIG00000035589) #16	SSR2 (ENSRBIG00000039430) #17	UBQLN4 (ENSRBIG00000033879) #18	LAMTOR2 (ENSRBIG00000043324) #19	RAB25 (ENSRBIG00000044154) #20	MEX3A (ENSRBIG00000033197) #21	LMNA (ENSRBIG00000041859) #22	SEMA4A (ENSRBIG00000037159) #23	ENSRBIG00000026928	SLC25A44 (ENSRBIG00000041041) #25	ENSRBIG00000036011	BGLAP (ENSRBIG00000000752) #27	ENSRBIG00000027798 #28	SMG5 (ENSRBIG00000027428) #29	ENSRBIG00000032628 #30	GLMP (ENSRBIG00000030275) #31	CCT3 (ENSRBIG00000032821) #32	TSACC (ENSRBIG00000036225) #33	RHBG (ENSRBIG00000029171)	ENSRBIG00000033686	MEF2D (ENSRBIG00000038018)	IQGAP3 (ENSRBIG00000036001)
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00940000156698	ENSGT00390000016256.l	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Cebidae	ANCESTRAL SPECIES	12	ENSGT00940000156698	ENSGT00390000016256.l	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00940000156698	ENSGT00390000016256.l	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.k	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00390000005493	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b
Capuchin	MODERN SPECIES	427		YY1AP1 (ENSCCAG00000026983)	DAP3 (ENSCCAG00000033532)	MSTO1 (ENSCCAG00000035498)	GON4L (ENSCCAG00000037108)	SYT11 (ENSCCAG00000016634) #12	RIT1 (ENSCCAG00000037656) #13	KHDC4 (ENSCCAG00000023017) #14	ARHGEF2 (ENSCCAG00000029636) #16	SSR2 (ENSCCAG00000037436) #17	ENSCCAG00000029510	UBQLN4 (ENSCCAG00000036689) #18	LAMTOR2 (ENSCCAG00000026308) #19	RAB25 (ENSCCAG00000021873) #20	MEX3A (ENSCCAG00000022351) #21	LMNA (ENSCCAG00000023432) #22	SEMA4A (ENSCCAG00000032806) #23	SLC25A44 (ENSCCAG00000026588) #25	PMF1 (ENSCCAG00000025850) #26	BGLAP (ENSCCAG00000020525) #27	PAQR6 (ENSCCAG00000027826) #28	SMG5 (ENSCCAG00000027409) #29	TMEM79 (ENSCCAG00000028389) #30	GLMP (ENSCCAG00000034620) #31	ENSCCAG00000011652	CCT3 (ENSCCAG00000033998) #32	TSACC (ENSCCAG00000022149) #33	RHBG (ENSCCAG00000029159)	ENSCCAG00000027166	MEF2D (ENSCCAG00000034560)	IQGAP3 (ENSCCAG00000025509)
Bolivian squirrel monkey	MODERN SPECIES	136	ASH1L (ENSSBOG00000026764)	YY1AP1 (ENSSBOG00000029484)	DAP3 (ENSSBOG00000033972)	MSTO1 (ENSSBOG00000023864)	GON4L (ENSSBOG00000032520)	SYT11 (ENSSBOG00000035584) #12	RIT1 (ENSSBOG00000023350) #13	KHDC4 (ENSSBOG00000034469) #14	RXFP4 (ENSSBOG00000034710)	ARHGEF2 (ENSSBOG00000034006) #16	SSR2 (ENSSBOG00000020706) #17	UBQLN4 (ENSSBOG00000021728) #18	LAMTOR2 (ENSSBOG00000035732) #19	RAB25 (ENSSBOG00000032212) #20	MEX3A (ENSSBOG00000025317) #21	LMNA (ENSSBOG00000014857) #22	SEMA4A (ENSSBOG00000019443) #23	SLC25A44 (ENSSBOG00000020325) #25	PMF1 (ENSSBOG00000034025) #26	BGLAP (ENSSBOG00000026047) #27	PAQR6 (ENSSBOG00000036021) #28	SMG5 (ENSSBOG00000033339) #29	TMEM79 (ENSSBOG00000021483) #30	GLMP (ENSSBOG00000020411) #31	CCT3 (ENSSBOG00000035044) #32	TSACC (ENSSBOG00000020015) #33	RHBG (ENSSBOG00000035568)	ENSSBOG00000035567	MEF2D (ENSSBOG00000033445)	IQGAP3 (ENSSBOG00000021499)	TTC24 (ENSSBOG00000027761)
Marmoset	MODERN SPECIES	9	YY1AP1 (ENSCJAG00000042285)	DAP3 (ENSCJAG00000008125)	ENSCJAG00000063148	GON4L (ENSCJAG00000007977)	SYT11 (ENSCJAG00000043885) #12	ENSCJAG00000032919	RIT1 (ENSCJAG00000061243) #13	KHDC4 (ENSCJAG00000007881) #14	ENSCJAG00000007878 #15	ARHGEF2 (ENSCJAG00000007846) #16	SSR2 (ENSCJAG00000046590) #17	UBQLN4 (ENSCJAG00000007755) #18	LAMTOR2 (ENSCJAG00000007739) #19	RAB25 (ENSCJAG00000007715) #20	MEX3A (ENSCJAG00000007711) #21	LMNA (ENSCJAG00000005413) #22	SEMA4A (ENSCJAG00000005605) #23	SLC25A44 (ENSCJAG00000005625) #25	ENSCJAG00000005636	BGLAP (ENSCJAG00000046802) #27	PAQR6 (ENSCJAG00000005656) #28	SMG5 (ENSCJAG00000005684) #29	TMEM79 (ENSCJAG00000005765) #30	GLMP (ENSCJAG00000005757) #31	ENSCJAG00000005776 #32	TSACC (ENSCJAG00000005831) #33	RHBG (ENSCJAG00000005838)	MEF2D (ENSCJAG00000005848)	IQGAP3 (ENSCJAG00000005862)	ENSCJAG00000006002	NAXE (ENSCJAG00000006018)
Mas night monkey	MODERN SPECIES	1180	YY1AP1 (ENSANAG00000022356)	DAP3 (ENSANAG00000033995)	ENSANAG00000035773	ENSANAG00000026598	GON4L (ENSANAG00000036572)	ENSANAG00000006710	SYT11 (ENSANAG00000020380) #12	RIT1 (ENSANAG00000033671) #13	ENSANAG00000034289 #14	ARHGEF2 (ENSANAG00000038394) #16	SSR2 (ENSANAG00000024178) #17	UBQLN4 (ENSANAG00000031889) #18	LAMTOR2 (ENSANAG00000036124) #19	RAB25 (ENSANAG00000036045) #20	MEX3A (ENSANAG00000032597) #21	LMNA (ENSANAG00000028703) #22	SEMA4A (ENSANAG00000032935) #23	SLC25A44 (ENSANAG00000033058) #25	ENSANAG00000028929	BGLAP (ENSANAG00000034859) #27	PAQR6 (ENSANAG00000023514) #28	SMG5 (ENSANAG00000032899) #29	TMEM79 (ENSANAG00000028444) #30	GLMP (ENSANAG00000020224) #31	ENSANAG00000026737	CCT3 (ENSANAG00000036513) #32	TSACC (ENSANAG00000036292) #33	RHBG (ENSANAG00000024190)	ENSANAG00000033733	MEF2D (ENSANAG00000033064)	IQGAP3 (ENSANAG00000024137)
Tarsier	MODERN SPECIES	4936																LMNA (ENSTSYG00000012988) #22
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	750	RUSC1 (ENSPCOG00000025947)	ASH1L (ENSPCOG00000017924)	DAP3 (ENSPCOG00000027412)	MSTO1 (ENSPCOG00000017579)	ENSPCOG00000024149	SYT11 (ENSPCOG00000017038) #12	RIT1 (ENSPCOG00000027211) #13	KHDC4 (ENSPCOG00000027660) #14	ARHGEF2 (ENSPCOG00000016528) #16	ENSPCOG00000019355	SSR2 (ENSPCOG00000022217) #17	UBQLN4 (ENSPCOG00000017664) #18	LAMTOR2 (ENSPCOG00000023468) #19	RAB25 (ENSPCOG00000005144) #20	MEX3A (ENSPCOG00000019307) #21	ENSPCOG00000028240 #22	SEMA4A (ENSPCOG00000021582) #23	SLC25A44 (ENSPCOG00000017429) #25	ENSPCOG00000022530	BGLAP (ENSPCOG00000020241) #27	PAQR6 (ENSPCOG00000024324) #28	SMG5 (ENSPCOG00000004741) #29	TMEM79 (ENSPCOG00000027811) #30	GLMP (ENSPCOG00000027438) #31	CCT3 (ENSPCOG00000027102) #32	TSACC (ENSPCOG00000018038) #33	RHBG (ENSPCOG00000010688)	MEF2D (ENSPCOG00000027219)	IQGAP3 (ENSPCOG00000028184)	TTC24 (ENSPCOG00000018517)	NAXE (ENSPCOG00000005557)
Coquerels sifaka	MODERN SPECIES	589	CCDC194 (ENSPCOG00000017156)	PLVAP (ENSPCOG00000025460)	GTPBP3 (ENSPCOG00000021581)	ANO8 (ENSPCOG00000017390)	DDA1 (ENSPCOG00000020928)	ENSPCOG00000020760	ENSPCOG00000018319	ANKLE1 (ENSPCOG00000002087)	BABAM1 (ENSPCOG00000019257)	USHBP1 (ENSPCOG00000028847)	NR2F6 (ENSPCOG00000018733)	OCEL1 (ENSPCOG00000019966)	USE1 (ENSPCOG00000023271)	MYO9B (ENSPCOG00000017503)	HAUS8 (ENSPCOG00000021851)	ENSPCOG00000024385 #22	ENSPCOG00000020455
Greater bamboo lemur	MODERN SPECIES	1146																LMNA (ENSPSMG00000021251) #22	SEMA4A (ENSPSMG00000021036) #23	SLC25A44 (ENSPSMG00000020969) #25	PMF1 (ENSPSMG00000020960) #26	BGLAP (ENSPSMG00000020939) #27	PAQR6 (ENSPSMG00000020927) #28	SMG5 (ENSPSMG00000020901) #29	TMEM79 (ENSPSMG00000020834) #30	GLMP (ENSPSMG00000020821) #31	ENSPSMG00000020737 #32	TSACC (ENSPSMG00000020661) #33
Mouse lemur	MODERN SPECIES	11	RUSC1 (ENSMICG00000029028)	ASH1L (ENSMICG00000007490)	DAP3 (ENSMICG00000031947)	MSTO1 (ENSMICG00000028414)	ENSMICG00000002183	SYT11 (ENSMICG00000038586) #12	RIT1 (ENSMICG00000044667) #13	KHDC4 (ENSMICG00000002202) #14	ARHGEF2 (ENSMICG00000002212) #16	ENSMICG00000030729	ENSMICG00000038131 #17	UBQLN4 (ENSMICG00000002222) #18	LAMTOR2 (ENSMICG00000002227) #19	RAB25 (ENSMICG00000002230) #20	MEX3A (ENSMICG00000046214) #21	LMNA (ENSMICG00000002236) #22	SEMA4A (ENSMICG00000002242) #23	SLC25A44 (ENSMICG00000047168) #25	ENSMICG00000002248	BGLAP (ENSMICG00000045135) #27	PAQR6 (ENSMICG00000002252) #28	SMG5 (ENSMICG00000002257) #29	TMEM79 (ENSMICG00000002260) #30	GLMP (ENSMICG00000002263) #31	ENSMICG00000038362	ENSMICG00000030201 #32	TSACC (ENSMICG00000002266) #33	RHBG (ENSMICG00000017784)	MEF2D (ENSMICG00000034832)	IQGAP3 (ENSMICG00000008266)	TTC24 (ENSMICG00000008294)
Bushbaby	MODERN SPECIES	206	RUSC1 (ENSOGAG00000025498)	ASH1L (ENSOGAG00000009609)	DAP3 (ENSOGAG00000000845)	MSTO1 (ENSOGAG00000031236)	ENSOGAG00000000849	SYT11 (ENSOGAG00000002258) #12	ENSOGAG00000002260 #13	KHDC4 (ENSOGAG00000002261) #14	ENSOGAG00000026040 #15	ARHGEF2 (ENSOGAG00000011581) #16	SSR2 (ENSOGAG00000016945) #17	UBQLN4 (ENSOGAG00000016948) #18	LAMTOR2 (ENSOGAG00000016953) #19	RAB25 (ENSOGAG00000016955) #20	MEX3A (ENSOGAG00000029891) #21	LMNA (ENSOGAG00000016961) #22	SEMA4A (ENSOGAG00000025069) #23	ENSOGAG00000034650 #25	PMF1 (ENSOGAG00000004964) #26	BGLAP (ENSOGAG00000025659) #27	PAQR6 (ENSOGAG00000031893) #28	SMG5 (ENSOGAG00000004966) #29	TMEM79 (ENSOGAG00000012912) #30	GLMP (ENSOGAG00000030120) #31	CCT3 (ENSOGAG00000008967) #32	TSACC (ENSOGAG00000031578) #33	RHBG (ENSOGAG00000006682)	MEF2D (ENSOGAG00000011222)	IQGAP3 (ENSOGAG00000006690)	TTC24 (ENSOGAG00000030094)	NAXE (ENSOGAG00000034354)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157244 #22
Hedgehog	MODERN SPECIES	5326																LMNA (ENSEEUG00000010599) #22
Common shrew	MODERN SPECIES	4141																LMNA (ENSSARG00000000613) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000008765
Artiodactyla	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Suina	ANCESTRAL SPECIES	8	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00980000200110	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Chacoan peccary	MODERN SPECIES	139	ASH1L (ENSCWAG00000020727)	ENSCWAG00000020755	DAP3 (ENSCWAG00000020775)	MSTO1 (ENSCWAG00000020845)	ENSCWAG00000020896	SYT11 (ENSCWAG00000020979) #12	RIT1 (ENSCWAG00000020995) #13	KHDC4 (ENSCWAG00000007841) #14	ENSCWAG00000007912 #15	ARHGEF2 (ENSCWAG00000007966) #16	SSR2 (ENSCWAG00000008262) #17	UBQLN4 (ENSCWAG00000008403) #18	LAMTOR2 (ENSCWAG00000008520) #19	RAB25 (ENSCWAG00000008570) #20	MEX3A (ENSCWAG00000008643) #21	LMNA (ENSCWAG00000008705) #22	SEMA4A (ENSCWAG00000009047) #23	SLC25A44 (ENSCWAG00000009427) #25	ENSCWAG00000009485	BGLAP (ENSCWAG00000009559) #27	PAQR6 (ENSCWAG00000009611) #28	SMG5 (ENSCWAG00000009746) #29	ENSCWAG00000009845	GLMP (ENSCWAG00000009920) #31	CCT3 (ENSCWAG00000010037) #32	TSACC (ENSCWAG00000010146) #33	RHBG (ENSCWAG00000010166)	MEF2D (ENSCWAG00000010285)	IQGAP3 (ENSCWAG00000010428)	NAXE (ENSCWAG00000010793)	GPATCH4 (ENSCWAG00000010847)
Pig	MODERN SPECIES	12	ENSSSCG00000040632	ASH1L (ENSSSCG00000006508)	DAP3 (ENSSSCG00000006507)	MSTO1 (ENSSSCG00000006157)	ENSSSCG00000006510	SYT11 (ENSSSCG00000006506) #12	RIT1 (ENSSSCG00000023991) #13	KHDC4 (ENSSSCG00000006504) #14	RXFP4 (ENSSSCG00000006503)	ARHGEF2 (ENSSSCG00000006502) #16	SSR2 (ENSSSCG00000006501) #17	UBQLN4 (ENSSSCG00000006500) #18	LAMTOR2 (ENSSSCG00000006499) #19	RAB25 (ENSSSCG00000039186) #20	MEX3A (ENSSSCG00000006497) #21	LMNA (ENSSSCG00000006496) #22	SEMA4A (ENSSSCG00000006495) #23	SLC25A44 (ENSSSCG00000006494) #25	PMF1 (ENSSSCG00000052919)	BGLAP (ENSSSCG00000055767) #27	PAQR6 (ENSSSCG00000006491) #28	SMG5 (ENSSSCG00000006490) #29	TMEM79 (ENSSSCG00000006489) #30	GLMP (ENSSSCG00000006488) #31	CCT3 (ENSSSCG00000006487) #32	TSACC (ENSSSCG00000006486) #33	RHBG (ENSSSCG00000035121)	MEF2D (ENSSSCG00000006482)	IQGAP3 (ENSSSCG00000006475)	TTC24 (ENSSSCG00000006479)	NAXE (ENSSSCG00000006480)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Cetacea	ANCESTRAL SPECIES		ENSGT00900000141074.k	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524.a.a #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Odontoceti	ANCESTRAL SPECIES		ENSGT00900000141074.k	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100.g.a #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524.a.a #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00900000141074.k	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100.g.a #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524.a.a.a #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00900000141074.k	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100.g.a #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524.a.a.a #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Monodontidae	ANCESTRAL SPECIES		ENSGT00900000141074.k	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100.g.a #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524.a.a.a #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Narwhal	MODERN SPECIES	304	ENSMMNG00015012598	RUSC1 (ENSMMNG00015012570)	ASH1L (ENSMMNG00015012492)	DAP3 (ENSMMNG00015012383)	MSTO1 (ENSMMNG00015012309)	ENSMMNG00015012250	SYT11 (ENSMMNG00015012196) #12	RIT1 (ENSMMNG00015012172) #13	KHDC4 (ENSMMNG00015012142) #14	ARHGEF2 (ENSMMNG00015012060) #16	SSR2 (ENSMMNG00015012014) #17	UBQLN4 (ENSMMNG00015011968) #18	ENSMMNG00015011942 #19	RAB25 (ENSMMNG00015011919) #20	MEX3A (ENSMMNG00015011903) #21	LMNA (ENSMMNG00015011841) #22	SEMA4A (ENSMMNG00015011785) #23	SLC25A44 (ENSMMNG00015011755) #25	ENSMMNG00015011739	BGLAP (ENSMMNG00015011726) #27	ENSMMNG00015011675 #28	SMG5 (ENSMMNG00015011588) #29	TMEM79 (ENSMMNG00015011552) #30	GLMP (ENSMMNG00015011520) #31	CCT3 (ENSMMNG00015011489) #32	ENSMMNG00015011474 #33	RHBG (ENSMMNG00015011460)	MEF2D (ENSMMNG00015011394)	IQGAP3 (ENSMMNG00015011098)	TTC24 (ENSMMNG00015011000)	NAXE (ENSMMNG00015010984)
Beluga whale	MODERN SPECIES	69	PKLR (ENSDLEG00000015946)	FDPS (ENSDLEG00000016328)	RUSC1 (ENSDLEG00000016359)	ASH1L (ENSDLEG00000016452)	DAP3 (ENSDLEG00000016565)	MSTO1 (ENSDLEG00000017154)	ENSDLEG00000017562	SYT11 (ENSDLEG00000017715) #12	RIT1 (ENSDLEG00000017727) #13	KIAA0907 (ENSDLEG00000017767) #14	ARHGEF2 (ENSDLEG00000018134) #16	SSR2 (ENSDLEG00000019690) #17	UBQLN4 (ENSDLEG00000019705) #18	ENSDLEG00000019714 #19	RAB25 (ENSDLEG00000019718) #20	LMNA (ENSDLEG00000019723) #22	MEX3A (ENSDLEG00000019727) #21	SEMA4A (ENSDLEG00000019729) #23	SLC25A44 (ENSDLEG00000019739) #25	ENSDLEG00000019747	BGLAP (ENSDLEG00000019752) #27	PAQR6 (ENSDLEG00000019756) #28	SMG5 (ENSDLEG00000019769) #29	TMEM79 (ENSDLEG00000019854) #30	GLMP (ENSDLEG00000019860) #31	CCT3 (ENSDLEG00000019863) #32	ENSDLEG00000019867 #33	RHBG (ENSDLEG00000019871)	MEF2D (ENSDLEG00000019879)	IQGAP3 (ENSDLEG00000019944)	NAXE (ENSDLEG00000020367)
Vaquita	MODERN SPECIES		ENSPSNG00000000654	RUSC1 (ENSPSNG00000000714)	ASH1L (ENSPSNG00000000798)	DAP3 (ENSPSNG00000000898)	MSTO1 (ENSPSNG00000000978)	ENSPSNG00000001061	SYT11 (ENSPSNG00000001267) #12	RIT1 (ENSPSNG00000001303) #13	KHDC4 (ENSPSNG00000001328) #14	ARHGEF2 (ENSPSNG00000001483) #16	SSR2 (ENSPSNG00000001665) #17	UBQLN4 (ENSPSNG00000001709) #18	ENSPSNG00000001753 #19	RAB25 (ENSPSNG00000001780) #20	MEX3A (ENSPSNG00000001802) #21	LMNA (ENSPSNG00000001902) #22	SEMA4A (ENSPSNG00000001991) #23	SLC25A44 (ENSPSNG00000002061) #25	ENSPSNG00000002083	BGLAP (ENSPSNG00000002109) #27	PAQR6 (ENSPSNG00000002135) #28	SMG5 (ENSPSNG00000002185) #29	TMEM79 (ENSPSNG00000002228) #30	GLMP (ENSPSNG00000002245) #31	CCT3 (ENSPSNG00000002288) #32	ENSPSNG00000002309 #33	RHBG (ENSPSNG00000002332)	MEF2D (ENSPSNG00000002434)	IQGAP3 (ENSPSNG00000002502)	TTC24 (ENSPSNG00000002542)	NAXE (ENSPSNG00000002584)
Dolphin	MODERN SPECIES	1345																LMNA (ENSTTRG00000001395) #22	SEMA4A (ENSTTRG00000001397) #23	SLC25A44 (ENSTTRG00000001398) #25	ENSTTRG00000001399	ENSTTRG00000001400 #28	SMG5 (ENSTTRG00000001401) #29	TMEM79 (ENSTTRG00000001404) #30	GLMP (ENSTTRG00000001405) #31	CCT3 (ENSTTRG00000001407) #32	TSACC (ENSTTRG00000001408) #33
Sperm whale	MODERN SPECIES	365																LMNA (ENSPCTG00005019716) #22
Blue whale	MODERN SPECIES		RUSC1 (ENSBMSG00010003260)	ASH1L (ENSBMSG00010003357)	DAP3 (ENSBMSG00010003437)	MSTO1 (ENSBMSG00010003477)	ENSBMSG00010003566	ENSBMSG00010004110	SYT11 (ENSBMSG00010004119) #12	RIT1 (ENSBMSG00010004147) #13	KHDC4 (ENSBMSG00010004174) #14	ARHGEF2 (ENSBMSG00010004265) #16	SSR2 (ENSBMSG00010004540) #17	UBQLN4 (ENSBMSG00010004574) #18	LAMTOR2 (ENSBMSG00010004612) #19	RAB25 (ENSBMSG00010004624) #20	MEX3A (ENSBMSG00010004637) #21	LMNA (ENSBMSG00010004668) #22	SEMA4A (ENSBMSG00010004700) #23	SLC25A44 (ENSBMSG00010004726) #25	ENSBMSG00010004738	BGLAP (ENSBMSG00010004757) #27	SMG5 (ENSBMSG00010004787) #29	TMEM79 (ENSBMSG00010004850) #30	GLMP (ENSBMSG00010004864) #31	CCT3 (ENSBMSG00010004881) #32	RHBG (ENSBMSG00010004893)	MEF2D (ENSBMSG00010004921)	ENSBMSG00010004948	ENSBMSG00010005020	TTC24 (ENSBMSG00010005032)	NAXE (ENSBMSG00010005042)	ENSBMSG00010005049
Pecora	ANCESTRAL SPECIES	2	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.i.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Yarkand deer	MODERN SPECIES	12	FDPS (ENSCHYG00000026456)	RUSC1 (ENSCHYG00000026489)	ASH1L (ENSCHYG00000026415)	ENSCHYG00000026325	MSTO1 (ENSCHYG00000026231)	SYT11 (ENSCHYG00000026203) #12	RIT1 (ENSCHYG00000026149) #13	KHDC4 (ENSCHYG00000025994) #14	ENSCHYG00000025955 #15	ARHGEF2 (ENSCHYG00000025091) #16	SSR2 (ENSCHYG00000024941) #17	UBQLN4 (ENSCHYG00000024829) #18	ENSCHYG00000024792 #19	RAB25 (ENSCHYG00000024758) #20	MEX3A (ENSCHYG00000024742) #21	LMNA (ENSCHYG00000024365) #22	SEMA4A (ENSCHYG00000024199) #23	SLC25A44 (ENSCHYG00000024104) #25	ENSCHYG00000024011	ENSCHYG00000023870 #28	SMG5 (ENSCHYG00000023680) #29	TMEM79 (ENSCHYG00000023640) #30	GLMP (ENSCHYG00000023522) #31	CCT3 (ENSCHYG00000023340) #32	TSACC (ENSCHYG00000023310) #33	RHBG (ENSCHYG00000023227)	MEF2D (ENSCHYG00000022984)	IQGAP3 (ENSCHYG00000022712)	TTC24 (ENSCHYG00000022576)	NAXE (ENSCHYG00000022519)	GPATCH4 (ENSCHYG00000022446)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.i.a.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Siberian musk deer	MODERN SPECIES	1202	ASH1L (ENSMMSG00000006966)	DAP3 (ENSMMSG00000006783)	MSTO1 (ENSMMSG00000006647)	ENSMMSG00000006603	ENSMMSG00000005075	SYT11 (ENSMMSG00000004948) #12	RIT1 (ENSMMSG00000004820) #13	KHDC4 (ENSMMSG00000022609) #14	RXFP4 (ENSMMSG00000022594)	ARHGEF2 (ENSMMSG00000022532) #16	SSR2 (ENSMMSG00000022486) #17	UBQLN4 (ENSMMSG00000022457) #18	LAMTOR2 (ENSMMSG00000022447) #19	RAB25 (ENSMMSG00000022435) #20	MEX3A (ENSMMSG00000022428) #21	LMNA (ENSMMSG00000022290) #22	ENSMMSG00000022232	SEMA4A (ENSMMSG00000022204) #23	SLC25A44 (ENSMMSG00000022189) #25	PMF1 (ENSMMSG00000022165) #26	BGLAP (ENSMMSG00000022141) #27	PAQR6 (ENSMMSG00000022081) #28	SMG5 (ENSMMSG00000022024) #29	TMEM79 (ENSMMSG00000022007) #30	GLMP (ENSMMSG00000021977) #31	CCT3 (ENSMMSG00000021905) #32	TSACC (ENSMMSG00000021888) #33	RHBG (ENSMMSG00000021854)	MEF2D (ENSMMSG00000021733)	IQGAP3 (ENSMMSG00000021624)	NAXE (ENSMMSG00000021541)
Bovidae	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.i.a.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Bovinae	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.i.a.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Bos	ANCESTRAL SPECIES		ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.i.a.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Bos_a	ANCESTRAL SPECIES	27	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.i.a.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00390000005534.b.b.c.b.a.a.b.a.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a
Domestic yak	MODERN SPECIES	22	MSTO1 (ENSBGRG00000020857)	ENSBGRG00000021040	ENSBGRG00000021483	ENSBGRG00000021494	SYT11 (ENSBGRG00000021562) #12	RIT1 (ENSBGRG00000021581) #13	KHDC4 (ENSBGRG00000021657) #14	ENSBGRG00000021933 #15	ARHGEF2 (ENSBGRG00000022001) #16	SSR2 (ENSBGRG00000022293) #17	ENSBGRG00000022398	UBQLN4 (ENSBGRG00000022445) #18	ENSBGRG00000022629 #19	RAB25 (ENSBGRG00000022700) #20	MEX3A (ENSBGRG00000022736) #21	LMNA (ENSBGRG00000022777) #22	SEMA4A (ENSBGRG00000023018) #23	SLC25A44 (ENSBGRG00000023097) #25	ENSBGRG00000023141	BGLAP (ENSBGRG00000023200) #27	PAQR6 (ENSBGRG00000023244) #28	SMG5 (ENSBGRG00000023383) #29	ENSBGRG00000023682	GLMP (ENSBGRG00000023724) #31	CCT3 (ENSBGRG00000023849) #32	TSACC (ENSBGRG00000024207) #33	RHBG (ENSBGRG00000024238)	ENSBGRG00000024335	ENSBGRG00000024360	ENSBGRG00000024425	ENSBGRG00000024445
Wild yak	MODERN SPECIES	1034	RUSC1 (ENSBMUG00000013186)	ASH1L (ENSBMUG00000013247)	DAP3 (ENSBMUG00000013380)	MSTO1 (ENSBMUG00000013423)	ENSBMUG00000013609	SYT11 (ENSBMUG00000013663) #12	RIT1 (ENSBMUG00000013671) #13	KHDC4 (ENSBMUG00000013747) #14	ENSBMUG00000013792 #15	ARHGEF2 (ENSBMUG00000013945) #16	SSR2 (ENSBMUG00000014061) #17	UBQLN4 (ENSBMUG00000014079) #18	ENSBMUG00000014101 #19	RAB25 (ENSBMUG00000014113) #20	MEX3A (ENSBMUG00000014139) #21	LMNA (ENSBMUG00000014271) #22	SEMA4A (ENSBMUG00000014414) #23	SLC25A44 (ENSBMUG00000014438) #25	ENSBMUG00000014459	PAQR6 (ENSBMUG00000014479) #28	SMG5 (ENSBMUG00000014498) #29	TMEM79 (ENSBMUG00000014504) #30	GLMP (ENSBMUG00000014534) #31	CCT3 (ENSBMUG00000014597) #32	TSACC (ENSBMUG00000014639) #33	RHBG (ENSBMUG00000014644)	MEF2D (ENSBMUG00000014724)	ENSBMUG00000014767	IQGAP3 (ENSBMUG00000015133)	NAXE (ENSBMUG00000015409)	GPATCH4 (ENSBMUG00000015443)
Bos_b	ANCESTRAL SPECIES	1	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.i.a.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Cow	MODERN SPECIES	22	RUSC1 (ENSBTAG00000054061)	ASH1L (ENSBTAG00000003954)	DAP3 (ENSBTAG00000001199)	MSTO1 (ENSBTAG00000026613)	ENSBTAG00000045596	GON4L (ENSBTAG00000020356)	SYT11 (ENSBTAG00000011209) #12	RIT1 (ENSBTAG00000000105) #13	KHDC4 (ENSBTAG00000000108)	ARHGEF2 (ENSBTAG00000000113) #16	SSR2 (ENSBTAG00000001212) #17	UBQLN4 (ENSBTAG00000001548) #18	LAMTOR2 (ENSBTAG00000011754) #19	RAB25 (ENSBTAG00000018914) #20	MEX3A (ENSBTAG00000019158) #21	LMNA (ENSBTAG00000017574) #22	SEMA4A (ENSBTAG00000012228) #23	SLC25A44 (ENSBTAG00000009431) #25	PMF1 (ENSBTAG00000009432)	BGLAP (ENSBTAG00000009433) #27	PAQR6 (ENSBTAG00000009434) #28	SMG5 (ENSBTAG00000009435) #29	TMEM79 (ENSBTAG00000009436) #30	GLMP (ENSBTAG00000006364) #31	CCT3 (ENSBTAG00000006370) #32	TSACC (ENSBTAG00000049722) #33	RHBG (ENSBTAG00000012234)	MEF2D (ENSBTAG00000046545)	ENSBTAG00000021649	IQGAP3 (ENSBTAG00000006882)	TTC24 (ENSBTAG00000000401)
Hybrid Bos Indicus	MODERN SPECIES	22	RUSC1 (ENSBIXG00005012185)	ASH1L (ENSBIXG00005012290)	DAP3 (ENSBIXG00005012416)	MSTO1 (ENSBIXG00005012454)	ENSBIXG00005000325	SYT11 (ENSBIXG00005012585) #12	RIT1 (ENSBIXG00005012630) #13	KHDC4 (ENSBIXG00005012701) #14	ENSBIXG00005012726 #15	ARHGEF2 (ENSBIXG00005012933) #16	SSR2 (ENSBIXG00005013052) #17	UBQLN4 (ENSBIXG00005007481) #18	LAMTOR2 (ENSBIXG00005013118) #19	RAB25 (ENSBIXG00005001504) #20	MEX3A (ENSBIXG00005013155) #21	LMNA (ENSBIXG00005013303) #22	SEMA4A (ENSBIXG00005013357) #23	SLC25A44 (ENSBIXG00005013383) #25	ENSBIXG00005013392	BGLAP (ENSBIXG00005013414) #27	PAQR6 (ENSBIXG00005001616) #28	SMG5 (ENSBIXG00005013497) #29	TMEM79 (ENSBIXG00005013531) #30	GLMP (ENSBIXG00005013569) #31	CCT3 (ENSBIXG00005013620) #32	TSACC (ENSBIXG00005013651) #33	RHBG (ENSBIXG00005013672)	MEF2D (ENSBIXG00005013762)	IQGAP3 (ENSBIXG00005013848)	NAXE (ENSBIXG00005013984)	GPATCH4 (ENSBIXG00005001766)
American bison	MODERN SPECIES	3022	ASH1L (ENSBBBG00000014991)	DAP3 (ENSBBBG00000003747)	MSTO1 (ENSBBBG00000015135)	ENSBBBG00000015141	ENSBBBG00000007558	SYT11 (ENSBBBG00000003798) #12	RIT1 (ENSBBBG00000015315) #13	KHDC4 (ENSBBBG00000001328) #14	RXFP4 (ENSBBBG00000001313)	ARHGEF2 (ENSBBBG00000001262) #16	SSR2 (ENSBBBG00000003501) #17	UBQLN4 (ENSBBBG00000007559) #18	LAMTOR2 (ENSBBBG00000003825) #19	RAB25 (ENSBBBG00000003829) #20	MEX3A (ENSBBBG00000015363) #21	LMNA (ENSBBBG00000003866) #22	SEMA4A (ENSBBBG00000003444) #23	SLC25A44 (ENSBBBG00000003424) #25	PMF1 (ENSBBBG00000015627) #26	BGLAP (ENSBBBG00000015635) #27	PAQR6 (ENSBBBG00000015650) #28	SMG5 (ENSBBBG00000015667) #29	ENSBBBG00000003912	GLMP (ENSBBBG00000015689) #31	CCT3 (ENSBBBG00000015738) #32	TSACC (ENSBBBG00000015743) #33	RHBG (ENSBBBG00000003929)	MEF2D (ENSBBBG00000000772)	IQGAP3 (ENSBBBG00000007083)	NAXE (ENSBBBG00000016391)	GPATCH4 (ENSBBBG00000016396)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.i.a.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765
Goat	MODERN SPECIES	22	DAP3 (ENSCHIG00000017638)	MSTO1 (ENSCHIG00000027233)	ENSCHIG00000021776	ENSCHIG00000011207	ENSCHIG00000025192	SYT11 (ENSCHIG00000021455) #12	RIT1 (ENSCHIG00000010506) #13	KHDC4 (ENSCHIG00000022965) #14	ENSCHIG00000012796 #15	ARHGEF2 (ENSCHIG00000018812) #16	SSR2 (ENSCHIG00000027199) #17	UBQLN4 (ENSCHIG00000015053) #18	LAMTOR2 (ENSCHIG00000026461) #19	RAB25 (ENSCHIG00000018911) #20	MEX3A (ENSCHIG00000012770) #21	LMNA (ENSCHIG00000022777) #22	SEMA4A (ENSCHIG00000022763) #23	SLC25A44 (ENSCHIG00000011510) #25	ENSCHIG00000025721	BGLAP (ENSCHIG00000025718) #27	PAQR6 (ENSCHIG00000019473) #28	SMG5 (ENSCHIG00000007709) #29	TMEM79 (ENSCHIG00000024223) #30	GLMP (ENSCHIG00000018226) #31	CCT3 (ENSCHIG00000011665) #32	TSACC (ENSCHIG00000008701) #33	RHBG (ENSCHIG00000018535)	MEF2D (ENSCHIG00000010363)	IQGAP3 (ENSCHIG00000026372)	NAXE (ENSCHIG00000014440)	GPATCH4 (ENSCHIG00000021295)
Rambouillet Sheep	MODERN SPECIES		MSTO1 (ENSOARG00020013057)	ENSOARG00020013143	ENSOARG00020013192	ENSOARG00020013774	SYT11 (ENSOARG00020013872) #12	RIT1 (ENSOARG00020013942) #13	KHDC4 (ENSOARG00020014119) #14	RXFP4 (ENSOARG00020014277)	ARHGEF2 (ENSOARG00020014346) #16	SSR2 (ENSOARG00020015600) #17	ENSOARG00020015739	UBQLN4 (ENSOARG00020015789) #18	LAMTOR2 (ENSOARG00020015838) #19	RAB25 (ENSOARG00020015913) #20	MEX3A (ENSOARG00020015946) #21	LMNA (ENSOARG00020016018) #22	SEMA4A (ENSOARG00020016412) #23	SLC25A44 (ENSOARG00020016505) #25	PMF1 (ENSOARG00020016596) #26	BGLAP (ENSOARG00020016735) #27	PAQR6 (ENSOARG00020016793) #28	SMG5 (ENSOARG00020016889) #29	TMEM79 (ENSOARG00020017071) #30	GLMP (ENSOARG00020017115) #31	CCT3 (ENSOARG00020017271) #32	TSACC (ENSOARG00020017382) #33	RHBG (ENSOARG00020017414)	MEF2D (ENSOARG00020017561)	IQGAP3 (ENSOARG00020018796)	NAXE (ENSOARG00020026107)	GPATCH4 (ENSOARG00020026108)
Camelidae	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000161384
Arabian camel	MODERN SPECIES	13	ENSCDRG00005008918	DAP3 (ENSCDRG00005008986)	ENSCDRG00005009290	ENSCDRG00005009473	MSTO1 (ENSCDRG00005009513)	SYT11 (ENSCDRG00005009687) #12	RIT1 (ENSCDRG00005009734) #13	ENSCDRG00005009887	RXFP4 (ENSCDRG00005009989)	ARHGEF2 (ENSCDRG00005010064) #16	SSR2 (ENSCDRG00005010971) #17	UBQLN4 (ENSCDRG00005011159) #18	LAMTOR2 (ENSCDRG00005011283) #19	RAB25 (ENSCDRG00005011364) #20	MEX3A (ENSCDRG00005011401) #21	LMNA (ENSCDRG00005011469) #22	SEMA4A (ENSCDRG00005011665) #23	SLC25A44 (ENSCDRG00005011792) #25	BGLAP (ENSCDRG00005011888) #27	PAQR6 (ENSCDRG00005011936) #28	SMG5 (ENSCDRG00005012076) #29	TMEM79 (ENSCDRG00005012417) #30	GLMP (ENSCDRG00005012477) #31	CCT3 (ENSCDRG00005012596) #32	TSACC (ENSCDRG00005012775) #33	RHBG (ENSCDRG00005012851)	MEF2D (ENSCDRG00005012987)	IQGAP3 (ENSCDRG00005013249)	NAXE (ENSCDRG00005013371)	ENSCDRG00005013417	HAPLN2 (ENSCDRG00005013516)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000008765
Carnivora	ANCESTRAL SPECIES	14	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Felidae	ANCESTRAL SPECIES	11	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Panthera	ANCESTRAL SPECIES	38	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Tiger	MODERN SPECIES	274	CLK2 (ENSPTIG00000010873)	HCN3 (ENSPTIG00000009244)	ENSPTIG00000008406	ASH1L (ENSPTIG00000019713)	DAP3 (ENSPTIG00000015443)	ENSPTIG00000013227	ENSPTIG00000007985	SYT11 (ENSPTIG00000007723) #12	RIT1 (ENSPTIG00000007045) #13	KHDC4 (ENSPTIG00000004498) #14	ENSPTIG00000001215 #16	SSR2 (ENSPTIG00000022102) #17	UBQLN4 (ENSPTIG00000022083) #18	LAMTOR2 (ENSPTIG00000022068) #19	RAB25 (ENSPTIG00000022049) #20	ENSPTIG00000021888 #22	SEMA4A (ENSPTIG00000016788) #23	SLC25A44 (ENSPTIG00000011099) #25	SMG5 (ENSPTIG00000007892) #29	TMEM79 (ENSPTIG00000007414) #30	GLMP (ENSPTIG00000004054) #31	CCT3 (ENSPTIG00000018610) #32	TSACC (ENSPTIG00000016816) #33	RHBG (ENSPTIG00000015826)	IQGAP3 (ENSPTIG00000013068)	TTC24 (ENSPTIG00000010925)	NAXE (ENSPTIG00000009667)	GPATCH4 (ENSPTIG00000006717)	ENSPTIG00000006345	BCAN (ENSPTIG00000000602)	NES (ENSPTIG00000021721)
Panthera_a	ANCESTRAL SPECIES	37	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
leopard	MODERN SPECIES	138	FDPS (ENSPPRG00000017484)	ENSPPRG00000015592	ASH1L (ENSPPRG00000014648)	ENSPPRG00000011971	DAP3 (ENSPPRG00000011800)	ENSPPRG00000008799	SYT11 (ENSPPRG00000000652) #12	RIT1 (ENSPPRG00000000399) #13	KHDC4 (ENSPPRG00000021149) #14	ARHGEF2 (ENSPPRG00000018064) #16	SSR2 (ENSPPRG00000009542) #17	UBQLN4 (ENSPPRG00000008090) #18	LAMTOR2 (ENSPPRG00000007518) #19	RAB25 (ENSPPRG00000006611) #20	MEX3A (ENSPPRG00000006585) #21	LMNA (ENSPPRG00000003442) #22	SEMA4A (ENSPPRG00000024539) #23	ENSPPRG00000017448 #25	ENSPPRG00000016604 #25	ENSPPRG00000015181	BGLAP (ENSPPRG00000013703) #27	PAQR6 (ENSPPRG00000013590) #28	ENSPPRG00000012440 #28	SMG5 (ENSPPRG00000011901) #29	TMEM79 (ENSPPRG00000011226) #30	GLMP (ENSPPRG00000010044) #31	CCT3 (ENSPPRG00000008924) #32	TSACC (ENSPPRG00000007969) #33	RHBG (ENSPPRG00000007022)	MEF2D (ENSPPRG00000005807)	IQGAP3 (ENSPPRG00000004143)
lion	MODERN SPECIES	44	PKLR (ENSPLOG00000008753)	FDPS (ENSPLOG00000008651)	RUSC1 (ENSPLOG00000008579)	ASH1L (ENSPLOG00000008458)	ENSPLOG00000008379	ENSPLOG00000008203	SYT11 (ENSPLOG00000008151) #12	RIT1 (ENSPLOG00000008053) #13	KHDC4 (ENSPLOG00000007865) #14	ARHGEF2 (ENSPLOG00000007611) #16	SSR2 (ENSPLOG00000007527) #17	UBQLN4 (ENSPLOG00000007496) #18	LAMTOR2 (ENSPLOG00000007417) #19	RAB25 (ENSPLOG00000007385) #20	MEX3A (ENSPLOG00000007367) #21	LMNA (ENSPLOG00000007050) #22	SEMA4A (ENSPLOG00000006968) #23	SLC25A44 (ENSPLOG00000006937) #25	ENSPLOG00000006903	BGLAP (ENSPLOG00000006890) #27	PAQR6 (ENSPLOG00000006831) #28	SMG5 (ENSPLOG00000006798) #29	ENSPLOG00000006758	GLMP (ENSPLOG00000006693) #31	CCT3 (ENSPLOG00000006587) #32	TSACC (ENSPLOG00000006484) #33	RHBG (ENSPLOG00000006433)	MEF2D (ENSPLOG00000006383)	IQGAP3 (ENSPLOG00000006262)	ENSPLOG00000006205	NAXE (ENSPLOG00000006161)
Cat	MODERN SPECIES	248	ASH1L (ENSFCAG00000012088)	DAP3 (ENSFCAG00000022787)	MSTO1 (ENSFCAG00000030966)	ENSFCAG00000012133	SYT11 (ENSFCAG00000029675) #12	ENSFCAG00000037260 #13	RIT1 (ENSFCAG00000044860) #13	KHDC4 (ENSFCAG00000012137) #14	ARHGEF2 (ENSFCAG00000030294) #16	SSR2 (ENSFCAG00000043703) #17	ENSFCAG00000050566	UBQLN4 (ENSFCAG00000011772) #18	LAMTOR2 (ENSFCAG00000028596) #19	RAB25 (ENSFCAG00000011775) #20	MEX3A (ENSFCAG00000044236) #21	LMNA (ENSFCAG00000011776) #22	SEMA4A (ENSFCAG00000011779) #23	SLC25A44 (ENSFCAG00000011780) #25	PMF1 (ENSFCAG00000011781) #26	BGLAP (ENSFCAG00000048978) #27	PAQR6 (ENSFCAG00000000759) #28	SMG5 (ENSFCAG00000011783) #29	TMEM79 (ENSFCAG00000011787) #30	GLMP (ENSFCAG00000011788) #31	CCT3 (ENSFCAG00000011789) #32	TSACC (ENSFCAG00000029523) #33	RHBG (ENSFCAG00000011790)	MEF2D (ENSFCAG00000024020)	IQGAP3 (ENSFCAG00000006549)	TTC24 (ENSFCAG00000046777)	GPATCH4 (ENSFCAG00000006554)
Caniformia	ANCESTRAL SPECIES	10	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Ursidae	ANCESTRAL SPECIES	4	ENSGT00900000141074.p	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256.f	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125.d #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765
Ursus	ANCESTRAL SPECIES	154															ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765
American black bear	MODERN SPECIES	22															MEX3A (ENSUAMG00000013807) #21	LMNA (ENSUAMG00000013784) #22	SEMA4A (ENSUAMG00000013756) #23	SLC25A44 (ENSUAMG00000013742) #25	ENSUAMG00000013738	BGLAP (ENSUAMG00000013735) #27	PAQR6 (ENSUAMG00000013731) #28	SMG5 (ENSUAMG00000013721) #29	TMEM79 (ENSUAMG00000013715) #30	GLMP (ENSUAMG00000013710) #31	CCT3 (ENSUAMG00000013707) #32	TSACC (ENSUAMG00000013704) #33	RHBG (ENSUAMG00000013701)
Polar bear	MODERN SPECIES	200	ENSUMAG00000019472	FDPS (ENSUMAG00000019468)	ASH1L (ENSUMAG00000019455)	ENSUMAG00000019450	DAP3 (ENSUMAG00000019443)	MSTO1 (ENSUMAG00000019384)	ENSUMAG00000018608	SYT11 (ENSUMAG00000018466) #12	RIT1 (ENSUMAG00000018455) #13	KHDC4 (ENSUMAG00000018427) #14	ARHGEF2 (ENSUMAG00000018398) #16	SSR2 (ENSUMAG00000018391) #17	ENSUMAG00000018385 #18	ENSUMAG00000018379	RAB25 (ENSUMAG00000018376) #20	LMNA (ENSUMAG00000018354) #22	SEMA4A (ENSUMAG00000018344) #23	SLC25A44 (ENSUMAG00000018341) #25	ENSUMAG00000018338	BGLAP (ENSUMAG00000018334) #27	ENSUMAG00000018331	SMG5 (ENSUMAG00000018041) #29	GLMP (ENSUMAG00000017987) #31	CCT3 (ENSUMAG00000017983) #32	TSACC (ENSUMAG00000017979) #33	RHBG (ENSUMAG00000017948)	MEF2D (ENSUMAG00000017857)	IQGAP3 (ENSUMAG00000017820)	ENSUMAG00000017807	GPATCH4 (ENSUMAG00000017797)	ENSUMAG00000017794
Giant Panda	MODERN SPECIES	18	PKLR (ENSAMEG00000000055)	FDPS (ENSAMEG00000000050)	ENSAMEG00000026390	ASH1L (ENSAMEG00000000049)	DAP3 (ENSAMEG00000000047)	MSTO1 (ENSAMEG00000000045)	ENSAMEG00000000043	SYT11 (ENSAMEG00000000041) #12	RIT1 (ENSAMEG00000000040) #13	KHDC4 (ENSAMEG00000000037) #14	ARHGEF2 (ENSAMEG00000000035) #16	SSR2 (ENSAMEG00000014198) #17	ENSAMEG00000028885 #19	RAB25 (ENSAMEG00000014249) #20	MEX3A (ENSAMEG00000014265) #21	LMNA (ENSAMEG00000014270) #22	SEMA4A (ENSAMEG00000014336) #23	SLC25A44 (ENSAMEG00000014397) #25	PMF1 (ENSAMEG00000014403) #26	BGLAP (ENSAMEG00000014417) #27	PAQR6 (ENSAMEG00000014419) #28	SMG5 (ENSAMEG00000014458) #29	TMEM79 (ENSAMEG00000014512) #30	GLMP (ENSAMEG00000014517) #31	CCT3 (ENSAMEG00000014524) #32	TSACC (ENSAMEG00000025844) #33	RHBG (ENSAMEG00000014562)	MEF2D (ENSAMEG00000014630)	IQGAP3 (ENSAMEG00000014672)	NAXE (ENSAMEG00000014814)	GPATCH4 (ENSAMEG00000014829)
Mustelinae	ANCESTRAL SPECIES	23	ENSGT00900000141074.m	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Ferret	MODERN SPECIES	441	ENSMPUG00000005496	ENSMPUG00000005484	ASH1L (ENSMPUG00000005465)	DAP3 (ENSMPUG00000005314)	MSTO1 (ENSMPUG00000005298)	ENSMPUG00000005274	SYT11 (ENSMPUG00000005268) #12	RIT1 (ENSMPUG00000005245) #13	KHDC4 (ENSMPUG00000005186) #14	ARHGEF2 (ENSMPUG00000005016) #16	SSR2 (ENSMPUG00000004963) #17	UBQLN4 (ENSMPUG00000004855) #18	LAMTOR2 (ENSMPUG00000004826) #19	RAB25 (ENSMPUG00000004790) #20	MEX3A (ENSMPUG00000004774) #21	LMNA (ENSMPUG00000004761) #22	SEMA4A (ENSMPUG00000004742) #23	SLC25A44 (ENSMPUG00000004717) #25	PMF1 (ENSMPUG00000004672) #26	BGLAP (ENSMPUG00000004628) #27	PAQR6 (ENSMPUG00000004566) #28	SMG5 (ENSMPUG00000004546) #29	TMEM79 (ENSMPUG00000004531) #30	GLMP (ENSMPUG00000004537) #31	CCT3 (ENSMPUG00000004401) #32	TSACC (ENSMPUG00000004391) #33	RHBG (ENSMPUG00000004385)	ENSMPUG00000018432	MEF2D (ENSMPUG00000004235)	ENSMPUG00000018431	IQGAP3 (ENSMPUG00000004216)
American mink	MODERN SPECIES	260	PKLR (ENSNVIG00000019507)	FDPS (ENSNVIG00000019613)	ENSNVIG00000019622	ASH1L (ENSNVIG00000019642)	DAP3 (ENSNVIG00000019822)	MSTO1 (ENSNVIG00000019933)	ENSNVIG00000019964	SYT11 (ENSNVIG00000020257) #12	RIT1 (ENSNVIG00000020272) #13	ENSNVIG00000020342 #14	ARHGEF2 (ENSNVIG00000020356) #16	SSR2 (ENSNVIG00000020385) #17	UBQLN4 (ENSNVIG00000020416) #18	LAMTOR2 (ENSNVIG00000020427) #19	RAB25 (ENSNVIG00000020433) #20	LMNA (ENSNVIG00000020473) #22	SEMA4A (ENSNVIG00000020558) #23	SLC25A44 (ENSNVIG00000020603) #25	ENSNVIG00000020609	BGLAP (ENSNVIG00000020619) #27	ENSNVIG00000020635 #28	SMG5 (ENSNVIG00000020654) #29	ENSNVIG00000020679	GLMP (ENSNVIG00000020700) #31	CCT3 (ENSNVIG00000020748) #32	TSACC (ENSNVIG00000020774) #33	RHBG (ENSNVIG00000020780)	ENSNVIG00000020791	IQGAP3 (ENSNVIG00000020810)	TTC24 (ENSNVIG00000020904)	NAXE (ENSNVIG00000020938)
Canidae	ANCESTRAL SPECIES	1	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Dingo	MODERN SPECIES	271	FDPS (ENSCAFG00020006959)	ENSCAFG00020006949	ASH1L (ENSCAFG00020006713)	DAP3 (ENSCAFG00020006662)	MSTO1 (ENSCAFG00020006658)	ENSCAFG00020006650	SYT11 (ENSCAFG00020006484) #12	RIT1 (ENSCAFG00020006481) #13	KHDC4 (ENSCAFG00020006317) #14	ARHGEF2 (ENSCAFG00020006291) #16	SSR2 (ENSCAFG00020006268) #17	UBQLN4 (ENSCAFG00020006198) #18	ENSCAFG00020006183 #19	RAB25 (ENSCAFG00020006179) #20	MEX3A (ENSCAFG00020006171) #21	LMNA (ENSCAFG00020006147) #22	SEMA4A (ENSCAFG00020006101) #23	SLC25A44 (ENSCAFG00020006099) #25	ENSCAFG00020006096	BGLAP (ENSCAFG00020006091) #27	PAQR6 (ENSCAFG00020006075) #28	SMG5 (ENSCAFG00020006061) #29	TMEM79 (ENSCAFG00020006056) #30	GLMP (ENSCAFG00020006053) #31	CCT3 (ENSCAFG00020005487) #32	TSACC (ENSCAFG00020005438) #33	RHBG (ENSCAFG00020005431)	MEF2D (ENSCAFG00020005413)	IQGAP3 (ENSCAFG00020005293)	NAXE (ENSCAFG00020005285)	ENSCAFG00020005274
Dog	MODERN SPECIES	35	FDPS (ENSCAFG00845011910)	RUSC1 (ENSCAFG00845011825)	ASH1L (ENSCAFG00845011740)	DAP3 (ENSCAFG00845011528)	MSTO1 (ENSCAFG00845011422)	ENSCAFG00845011319	SYT11 (ENSCAFG00845011235) #12	RIT1 (ENSCAFG00845011170) #13	KHDC4 (ENSCAFG00845011090) #14	ARHGEF2 (ENSCAFG00845010726) #16	SSR2 (ENSCAFG00845010530) #17	UBQLN4 (ENSCAFG00845010456) #18	LAMTOR2 (ENSCAFG00845010372) #19	RAB25 (ENSCAFG00845010319) #20	MEX3A (ENSCAFG00845010291) #21	LMNA (ENSCAFG00845010163) #22	SEMA4A (ENSCAFG00845010023) #23	SLC25A44 (ENSCAFG00845009963) #25	BGLAP (ENSCAFG00845009909) #27	SMG5 (ENSCAFG00845009772) #29	PAQR6 (ENSCAFG00845009665) #28	TMEM79 (ENSCAFG00845009619) #30	GLMP (ENSCAFG00845009558) #31	CCT3 (ENSCAFG00845009435) #32	RHBG (ENSCAFG00845009336)	MEF2D (ENSCAFG00845009027)	IQGAP3 (ENSCAFG00845008852)	ENSCAFG00845008793	NAXE (ENSCAFG00845008732)	ENSCAFG00845008688	HAPLN2 (ENSCAFG00845008623)
Red fox	MODERN SPECIES	23	FDPS (ENSVVUG00000004041)	RUSC1 (ENSVVUG00000004055)	ASH1L (ENSVVUG00000004069)	DAP3 (ENSVVUG00000004090)	MSTO1 (ENSVVUG00000004113)	ENSVVUG00000004239	SYT11 (ENSVVUG00000005667) #12	RIT1 (ENSVVUG00000005671) #13	KHDC4 (ENSVVUG00000005679) #14	ARHGEF2 (ENSVVUG00000005746) #16	SSR2 (ENSVVUG00000005756) #17	UBQLN4 (ENSVVUG00000005763) #18	LAMTOR2 (ENSVVUG00000005816) #19	RAB25 (ENSVVUG00000005821) #20	MEX3A (ENSVVUG00000005834) #21	LMNA (ENSVVUG00000005843) #22	ENSVVUG00000005853 #23	ENSVVUG00000005856 #23	SLC25A44 (ENSVVUG00000005863) #25	ENSVVUG00000005870	BGLAP (ENSVVUG00000005877) #27	PAQR6 (ENSVVUG00000005883) #28	SMG5 (ENSVVUG00000005887) #29	TMEM79 (ENSVVUG00000005892) #30	GLMP (ENSVVUG00000005893) #31	CCT3 (ENSVVUG00000005916) #32	ENSVVUG00000005925 #33	RHBG (ENSVVUG00000005930)	MEF2D (ENSVVUG00000005939)	IQGAP3 (ENSVVUG00000005972)	NAXE (ENSVVUG00000005999)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Megabat	MODERN SPECIES	1703																LMNA (ENSPVAG00000016740) #22	SEMA4A (ENSPVAG00000016741) #23	SLC25A44 (ENSPVAG00000016744) #25	ENSPVAG00000016745	ENSPVAG00000016747 #28	SMG5 (ENSPVAG00000016748) #29	GLMP (ENSPVAG00000016753) #31	CCT3 (ENSPVAG00000016756) #32	TSACC (ENSPVAG00000016762) #33	ENSPVAG00000016764
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Microbat	MODERN SPECIES	1148	RUSC1 (ENSMLUG00000013446)	ASH1L (ENSMLUG00000013461)	DAP3 (ENSMLUG00000005848)	MSTO1 (ENSMLUG00000009855)	ENSMLUG00000009868	SYT11 (ENSMLUG00000009918) #12	RIT1 (ENSMLUG00000009935) #13	KHDC4 (ENSMLUG00000009967) #14	RXFP4 (ENSMLUG00000010023)	ARHGEF2 (ENSMLUG00000010039) #16	SSR2 (ENSMLUG00000010102) #17	UBQLN4 (ENSMLUG00000010131) #18	ENSMLUG00000023871 #19	RAB25 (ENSMLUG00000010153) #20	MEX3A (ENSMLUG00000010185) #21	LMNA (ENSMLUG00000026412) #22	SEMA4A (ENSMLUG00000000639) #23	SLC25A44 (ENSMLUG00000008481) #25	PMF1 (ENSMLUG00000008489) #26	BGLAP (ENSMLUG00000029723) #27	PAQR6 (ENSMLUG00000008500) #28	SMG5 (ENSMLUG00000008518) #29	TMEM79 (ENSMLUG00000008551) #30	GLMP (ENSMLUG00000008556) #31	CCT3 (ENSMLUG00000015678) #32	RHBG (ENSMLUG00000008585)	ENSMLUG00000030150	ENSMLUG00000029510	MEF2D (ENSMLUG00000013967)	IQGAP3 (ENSMLUG00000009473)	TTC24 (ENSMLUG00000009528)
Greater horseshoe bat	MODERN SPECIES	14	RUSC1 (ENSRFEG00010013073)	ASH1L (ENSRFEG00010013223)	DAP3 (ENSRFEG00010013351)	MSTO1 (ENSRFEG00010013673)	ENSRFEG00010013759	SYT11 (ENSRFEG00010014057) #12	RIT1 (ENSRFEG00010014140) #13	KHDC4 (ENSRFEG00010014273) #14	RXFP4 (ENSRFEG00010014369)	ARHGEF2 (ENSRFEG00010014408) #16	SSR2 (ENSRFEG00010014692) #17	UBQLN4 (ENSRFEG00010014900) #18	ENSRFEG00010014949 #19	RAB25 (ENSRFEG00010015038) #20	MEX3A (ENSRFEG00010015157) #21	LMNA (ENSRFEG00010015236) #22	SEMA4A (ENSRFEG00010015377) #23	SLC25A44 (ENSRFEG00010015502) #25	PMF1 (ENSRFEG00010015555) #26	BGLAP (ENSRFEG00010015652) #27	PAQR6 (ENSRFEG00010015723) #28	SMG5 (ENSRFEG00010015872) #29	TMEM79 (ENSRFEG00010015938) #30	GLMP (ENSRFEG00010016041) #31	CCT3 (ENSRFEG00010010707) #32	TSACC (ENSRFEG00010010848) #33	RHBG (ENSRFEG00010010915)	MEF2D (ENSRFEG00010010994)	IQGAP3 (ENSRFEG00010011228)	NAXE (ENSRFEG00010012092)	GPATCH4 (ENSRFEG00010012165)
Equus	ANCESTRAL SPECIES	3	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Donkey	MODERN SPECIES	17	ENSEASG00005010484	ENSEASG00005019185	ENSEASG00005024932	DAP3 (ENSEASG00005019165)	ENSEASG00005019163	ENSEASG00005019154	SYT11 (ENSEASG00005019151) #12	RIT1 (ENSEASG00005019149) #13	KHDC4 (ENSEASG00005019143) #14	ARHGEF2 (ENSEASG00005019138) #16	SSR2 (ENSEASG00005019136) #17	UBQLN4 (ENSEASG00005019135) #18	LAMTOR2 (ENSEASG00005031172) #19	RAB25 (ENSEASG00005019133) #20	MEX3A (ENSEASG00005031469) #21	LMNA (ENSEASG00005019130) #22	SEMA4A (ENSEASG00005019129) #23	SLC25A44 (ENSEASG00005019128) #25	ENSEASG00005019127 #27	PAQR6 (ENSEASG00005019125) #28	SMG5 (ENSEASG00005019122) #29	TMEM79 (ENSEASG00005019119) #30	GLMP (ENSEASG00005019116) #31	CCT3 (ENSEASG00005019113) #32	TSACC (ENSEASG00005019110) #33	RHBG (ENSEASG00005019109)	MEF2D (ENSEASG00005019100)	IQGAP3 (ENSEASG00005018530)	TTC24 (ENSEASG00005030608)	NAXE (ENSEASG00005030968)	GPATCH4 (ENSEASG00005018284)
Horse	MODERN SPECIES	26	RUSC1 (ENSECAG00000023262)	ASH1L (ENSECAG00000018527)	ENSECAG00000049880	DAP3 (ENSECAG00000016401)	MSTO1 (ENSECAG00000008798)	SYT11 (ENSECAG00000019725) #12	ENSECAG00000019775	RIT1 (ENSECAG00000015714) #13	KHDC4 (ENSECAG00000011569) #14	ARHGEF2 (ENSECAG00000013759) #16	SSR2 (ENSECAG00000013740) #17	UBQLN4 (ENSECAG00000009993) #18	LAMTOR2 (ENSECAG00000009193) #19	RAB25 (ENSECAG00000023191) #20	MEX3A (ENSECAG00000007279) #21	LMNA (ENSECAG00000011097) #22	SEMA4A (ENSECAG00000008622) #23	SLC25A44 (ENSECAG00000007577) #25	ENSECAG00000005938	SMG5 (ENSECAG00000001389) #29	TMEM79 (ENSECAG00000001165) #30	GLMP (ENSECAG00000024928) #31	CCT3 (ENSECAG00000020633) #32	TSACC (ENSECAG00000020624) #33	RHBG (ENSECAG00000013494)	MEF2D (ENSECAG00000020356)	ENSECAG00000053296	IQGAP3 (ENSECAG00000020111)	TTC24 (ENSECAG00000019286)	NAXE (ENSECAG00000013968)	GPATCH4 (ENSECAG00000011135)
Atlantogenata	ANCESTRAL SPECIES	15	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Afrotheria	ANCESTRAL SPECIES	36	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Tenrec	MODERN SPECIES	5182																LMNA (ENSETEG00000010326) #22	SEMA4A (ENSETEG00000010330) #23	SLC25A44 (ENSETEG00000010331) #25	ENSETEG00000010334 #28	SMG5 (ENSETEG00000010336) #29	TMEM79 (ENSETEG00000010339) #30	GLMP (ENSETEG00000010343) #31	CCT3 (ENSETEG00000010344) #32
Afrotheria_a	ANCESTRAL SPECIES	37	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00530000064067	ENSGT00390000016256	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Elephant	MODERN SPECIES	325	ASH1L (ENSLAFG00000002197)	DAP3 (ENSLAFG00000005200)	MSTO1 (ENSLAFG00000006224)	ENSLAFG00000005205	SYT11 (ENSLAFG00000030067) #12	RIT1 (ENSLAFG00000014967) #13	KHDC4 (ENSLAFG00000014971) #14	RXFP4 (ENSLAFG00000011205)	ARHGEF2 (ENSLAFG00000011210) #16	SLC25A44 (ENSLAFG00000022753) #25	SSR2 (ENSLAFG00000011219) #17	UBQLN4 (ENSLAFG00000011221) #18	LAMTOR2 (ENSLAFG00000029041) #19	RAB25 (ENSLAFG00000009222) #20	MEX3A (ENSLAFG00000009220) #21	LMNA (ENSLAFG00000002832) #22	SEMA4A (ENSLAFG00000002834) #23	PMF1 (ENSLAFG00000025558) #26	BGLAP (ENSLAFG00000016824) #27	PAQR6 (ENSLAFG00000026867) #28	SMG5 (ENSLAFG00000006241) #29	TMEM79 (ENSLAFG00000027928) #30	GLMP (ENSLAFG00000005387) #31	CCT3 (ENSLAFG00000005391) #32	TSACC (ENSLAFG00000005393) #33	RHBG (ENSLAFG00000005397)	MEF2D (ENSLAFG00000015564)	IQGAP3 (ENSLAFG00000003433)	ENSLAFG00000003438	NAXE (ENSLAFG00000005283)	ENSLAFG00000028327
Hyrax	MODERN SPECIES	11196																LMNA (ENSPCAG00000012533) #22
Xenarthra	ANCESTRAL SPECIES	37											ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Armadillo	MODERN SPECIES	1939											SSR2 (ENSDNOG00000017062) #17	ENSDNOG00000017067 #18	LAMTOR2 (ENSDNOG00000017068) #19	RAB25 (ENSDNOG00000039155) #20	ENSDNOG00000037981 #21	LMNA (ENSDNOG00000010869) #22	ENSDNOG00000035727 #23
Sloth	MODERN SPECIES	4770																LMNA (ENSCHOG00000007028) #22
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00390000016256.b	ENSGT00530000064067	ENSGT00390000016256.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00390000016256.b	ENSGT00530000064067	ENSGT00390000016256.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Diprotodontia	ANCESTRAL SPECIES	30	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00390000016256.b	ENSGT00530000064067	ENSGT00390000016256.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Diprotodontia_a	ANCESTRAL SPECIES	28	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00390000016256.b	ENSGT00530000064067	ENSGT00390000016256.a	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
koala	MODERN SPECIES	42	DAP3 (ENSPCIG00000021692)	ENSPCIG00000021691	ENSPCIG00000035411	MSTO1 (ENSPCIG00000021688)	ENSPCIG00000019134	ENSPCIG00000031923	SYT11 (ENSPCIG00000036428) #12	RIT1 (ENSPCIG00000019094) #13	KHDC4 (ENSPCIG00000019084) #14	ARHGEF2 (ENSPCIG00000019069) #16	SSR2 (ENSPCIG00000019065) #17	UBQLN4 (ENSPCIG00000018959) #18	LAMTOR2 (ENSPCIG00000018952) #19	RAB25 (ENSPCIG00000018951) #20	MEX3A (ENSPCIG00000018950) #21	LMNA (ENSPCIG00000018949) #22	SEMA4A (ENSPCIG00000018948) #23	SLC25A44 (ENSPCIG00000018947) #25	PMF1 (ENSPCIG00000018946) #26	PAQR6 (ENSPCIG00000018944) #28	SMG5 (ENSPCIG00000018938) #29	TMEM79 (ENSPCIG00000018937) #30	GLMP (ENSPCIG00000018935) #31	CCT3 (ENSPCIG00000018933) #32	TSACC (ENSPCIG00000018932) #33	RHBG (ENSPCIG00000018705)	MEF2D (ENSPCIG00000024228)	IQGAP3 (ENSPCIG00000024229)	TTC24 (ENSPCIG00000024231)	NAXE (ENSPCIG00000024232)	ENSPCIG00000031639
Common wonbat	MODERN SPECIES	1035	ENSVURG00010014964	ENSVURG00010014951	ENSVURG00010014937	MSTO1 (ENSVURG00010014920)	ENSVURG00010014888	SYT11 (ENSVURG00010014876) #12	RIT1 (ENSVURG00010014864) #13	KHDC4 (ENSVURG00010014857) #14	ENSVURG00010014832	ARHGEF2 (ENSVURG00010014790) #16	SSR2 (ENSVURG00010014748) #17	UBQLN4 (ENSVURG00010014662) #18	LAMTOR2 (ENSVURG00010014640) #19	RAB25 (ENSVURG00010014628) #20	MEX3A (ENSVURG00010014622) #21	LMNA (ENSVURG00010014586) #22	SEMA4A (ENSVURG00010014559) #23	SLC25A44 (ENSVURG00010014546) #25	PMF1 (ENSVURG00010014537) #26	BGLAP (ENSVURG00010014520) #27	PAQR6 (ENSVURG00010014505) #28	SMG5 (ENSVURG00010014439) #29	TMEM79 (ENSVURG00010014422) #30	GLMP (ENSVURG00010014413) #31	CCT3 (ENSVURG00010014395) #32	ENSVURG00010014387 #33	RHBG (ENSVURG00010014362)	MEF2D (ENSVURG00010014293)	IQGAP3 (ENSVURG00010014258)	NAXE (ENSVURG00010014244)	ENSVURG00010014235
Wallaby	MODERN SPECIES	6518																LMNA (ENSMEUG00000006464) #22
Tasmanian devil	MODERN SPECIES	3	ASH1L (ENSSHAG00000009472)	ENSSHAG00000028324	ENSSHAG00000011327	ENSSHAG00000030016	ENSSHAG00000011742	ENSSHAG00000011779	ENSSHAG00000012239 #12	RIT1 (ENSSHAG00000012524) #13	KHDC4 (ENSSHAG00000012665) #14	ARHGEF2 (ENSSHAG00000020979) #16	ENSSHAG00000012964 #17	UBQLN4 (ENSSHAG00000013254) #18	LAMTOR2 (ENSSHAG00000013314) #19	RAB25 (ENSSHAG00000013327) #20	MEX3A (ENSSHAG00000032241) #21	LMNA (ENSSHAG00000013712) #22	SEMA4A (ENSSHAG00000013803) #23	SLC25A44 (ENSSHAG00000023169) #25	PMF1 (ENSSHAG00000013991) #26	BGLAP (ENSSHAG00000022571) #27	PAQR6 (ENSSHAG00000014101) #28	SMG5 (ENSSHAG00000014163) #29	TMEM79 (ENSSHAG00000014298) #30	ENSSHAG00000014320 #31	CCT3 (ENSSHAG00000014346) #32	TSACC (ENSSHAG00000024448) #33	RHBG (ENSSHAG00000014508)	MEF2D (ENSSHAG00000014927)	IQGAP3 (ENSSHAG00000015187)	ENSSHAG00000015427	ENSSHAG00000020807
Opossum	MODERN SPECIES	1	RUSC1 (ENSMODG00000017044)	ASH1L (ENSMODG00000017033)	DAP3 (ENSMODG00000017024)	ENSMODG00000025668	MSTO1 (ENSMODG00000017015)	ENSMODG00000017006	SYT11 (ENSMODG00000016994) #12	RIT1 (ENSMODG00000016989) #13	KHDC4 (ENSMODG00000016981) #14	ARHGEF2 (ENSMODG00000016970) #16	SSR2 (ENSMODG00000016964) #17	UBQLN4 (ENSMODG00000016961) #18	LAMTOR2 (ENSMODG00000016959) #19	RAB25 (ENSMODG00000048622) #20	MEX3A (ENSMODG00000016954) #21	LMNA (ENSMODG00000016946) #22	SEMA4A (ENSMODG00000016928) #23	SLC25A44 (ENSMODG00000016921) #25	PMF1 (ENSMODG00000016918) #26	ENSMODG00000016914 #27	PAQR6 (ENSMODG00000016910) #28	SMG5 (ENSMODG00000016901) #29	TMEM79 (ENSMODG00000016892) #30	GLMP (ENSMODG00000016888) #31	CCT3 (ENSMODG00000016883) #32	TSACC (ENSMODG00000016872) #33	RHBG (ENSMODG00000016867)	MEF2D (ENSMODG00000016861)	IQGAP3 (ENSMODG00000016849)	ENSMODG00000045953	NAXE (ENSMODG00000016821)
Platypus	MODERN SPECIES	88	FDPS (ENSOANG00000051014)	ENSOANG00000043091	DAP3 (ENSOANG00000031925)	ENSOANG00000042137	ENSOANG00000049330	SYT11 (ENSOANG00000042253) #12	KHDC4 (ENSOANG00000031515) #14	ARHGEF2 (ENSOANG00000047409) #16	SSR2 (ENSOANG00000041072) #17	UBQLN4 (ENSOANG00000040199) #18	ENSOANG00000039502 #19	RAB25 (ENSOANG00000036213) #20	MEX3A (ENSOANG00000039670) #21	ENSOANG00000048604	ENSOANG00000041083	LMNA (ENSOANG00000012813) #22	SEMA4A (ENSOANG00000009659) #23	SLC25A44 (ENSOANG00000043363) #25	ENSOANG00000050835 #26	ENSOANG00000036654	SMG5 (ENSOANG00000048288) #29	GLMP (ENSOANG00000031128) #31	CCT3 (ENSOANG00000003511) #32	ENSOANG00000046848	MEF2D (ENSOANG00000049864)	RHBG (ENSOANG00000044068)	HAPLN2 (ENSOANG00000031852)	ENSOANG00000044512	ENSOANG00000040887	ENSOANG00000041452	CRABP2 (ENSOANG00000038309)
Sauria	ANCESTRAL SPECIES	28	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Lepidosauria	ANCESTRAL SPECIES	36				ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847	ENSGT00390000002799
Episquamata	ANCESTRAL SPECIES	33	ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00940000167298	ENSGT00410000026290.i #27
Toxicofera	ANCESTRAL SPECIES	61					ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451
Elapidae	ANCESTRAL SPECIES	41		ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151	ENSGT00640000091486.a	ENSGT00390000018613.b	ENSGT00940000164681	ENSGT00390000011180
Indian cobra	MODERN SPECIES	17	ENSNNAG00000018802	ENSNNAG00000018804	RHBG (ENSNNAG00000018811)	ENSNNAG00000018829	ENSNNAG00000018839	HAPLN2 (ENSNNAG00000018844)	MEF2D (ENSNNAG00000018857)	IQGAP3 (ENSNNAG00000018874)	NAXE (ENSNNAG00000018884)	UBQLN4 (ENSNNAG00000018894) #18	LAMTOR2 (ENSNNAG00000018899) #19	RAB25 (ENSNNAG00000018902) #20	ENSNNAG00000018907	ENSNNAG00000018909	MEX3A (ENSNNAG00000018913) #21	LMNA (ENSNNAG00000018915) #22	SEMA4A (ENSNNAG00000018920) #23	SLC25A44 (ENSNNAG00000018928) #25	BGLAP (ENSNNAG00000018931) #27	ENSNNAG00000018936	ENSNNAG00000018941	ENSNNAG00000018945	ENSNNAG00000018946	CX3CR1 (ENSNNAG00000018948)	ENSNNAG00000018951	ENSNNAG00000018956	ENSNNAG00000018960	ENSNNAG00000018962	NHLH1 (ENSNNAG00000018963)	NCSTN (ENSNNAG00000018964)	COPA (ENSNNAG00000018975)
Elapidae_a	ANCESTRAL SPECIES	94		ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151	ENSGT00640000091486.a	ENSGT00390000018613.b	ENSGT00940000164681	ENSGT00390000011180	ENSGT00390000007071	ENSGT00390000008714.a	ENSGT00550000075099
Acanthophiinae	ANCESTRAL SPECIES	81	ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000163126	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151	ENSGT00640000091486.a	ENSGT00390000018613.b	ENSGT00940000164681	ENSGT00390000011180	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272
Eastern brown snake	MODERN SPECIES	96	ENSPTXG00000016490	ENSPTXG00000016488	PC (ENSPTXG00000016469)	ENSPTXG00000016468	ENSPTXG00000016467	HAPLN2 (ENSPTXG00000016465)	RHBG (ENSPTXG00000016463)	MEF2D (ENSPTXG00000016452)	IQGAP3 (ENSPTXG00000016444)	UBQLN4 (ENSPTXG00000016442) #18	LAMTOR2 (ENSPTXG00000016441) #19	RAB25 (ENSPTXG00000016440) #20	ENSPTXG00000016439	ENSPTXG00000016437	MEX3A (ENSPTXG00000016434) #21	LMNA (ENSPTXG00000016432) #22	ENSPTXG00000016426	ENSPTXG00000016424	ENSPTXG00000016422	ENSPTXG00000016419	CX3CR1 (ENSPTXG00000016417)	VANGL2 (ENSPTXG00000016413)	ENSPTXG00000016411	NHLH1 (ENSPTXG00000016409)	NCSTN (ENSPTXG00000016406)	COPA (ENSPTXG00000015419)	ENSPTXG00000015401	TAF6L (ENSPTXG00000015400)	BANF1 (ENSPTXG00000015398)	ENSPTXG00000015396	EIF1AD (ENSPTXG00000015395)
Mainland tiger snake	MODERN SPECIES	2861																ENSNSUG00000000342 #22
Blue-lipped sea krait	MODERN SPECIES	2119																LMNA (ENSLLTG00000002945) #22
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1846																ENSACAG00000017030 #22
Lizard	MODERN SPECIES	1	ENSACAG00000039006	ENSACAG00000001721	HNRNPK (ENSACAG00000001479)	RMI1 (ENSACAG00000001474)	SLC28A3 (ENSACAG00000001185)	NTRK2 (ENSACAG00000000978)	AGTPBP1 (ENSACAG00000022596)	NAA35 (ENSACAG00000000424)	GOLM1 (ENSACAG00000000371)	ISCA1 (ENSACAG00000038585)	TUT7 (ENSACAG00000000279)	ENSACAG00000042784	ENSACAG00000014320	ENSACAG00000014306	GAS1 (ENSACAG00000014344)	ENSACAG00000013200 #22	ENSACAG00000041193	ENSACAG00000013377	ENSACAG00000013328	FBP2 (ENSACAG00000038303)	FBP1 (ENSACAG00000013243)	ENSACAG00000036791	ENSACAG00000013209	FANCC (ENSACAG00000013146)	ENSACAG00000039829	PTCH1 (ENSACAG00000012983)	ENSACAG00000039786	ENSACAG00000012947	HSD17B3 (ENSACAG00000038601)	SLC35D2 (ENSACAG00000037323)	ZNF367 (ENSACAG00000012929)
Laterata	ANCESTRAL SPECIES	79											ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00940000167298	ENSGT00410000026290.i #27
Argentine black and white tegu	MODERN SPECIES	150	LGALS12 (ENSSMRG00000015858)	PC (ENSSMRG00000015860)	ENSSMRG00000015861	BCAN (ENSSMRG00000015863)	HAPLN2 (ENSSMRG00000015864)	GPATCH4 (ENSSMRG00000015866)	NAXE (ENSSMRG00000015867)	ENSSMRG00000015868	IQGAP3 (ENSSMRG00000015869)	MEF2D (ENSSMRG00000017410)	UBQLN4 (ENSSMRG00000017524) #18	LAMTOR2 (ENSSMRG00000017526) #19	RAB25 (ENSSMRG00000017527) #20	ENSSMRG00000017528	MEX3A (ENSSMRG00000017529) #21	LMNA (ENSSMRG00000017530) #22	SEMA4A (ENSSMRG00000017533) #23	SLC25A44 (ENSSMRG00000017536) #25	ENSSMRG00000017539	ENSSMRG00000017540 #27	VANGL2 (ENSSMRG00000017543)	ENSSMRG00000017546	NHLH1 (ENSSMRG00000017548)	NCSTN (ENSSMRG00000017550)	COPA (ENSSMRG00000017553)
Common wall lizard	MODERN SPECIES	7	NAXE (ENSPMRG00000017502)	ENSPMRG00000017504	ENSPMRG00000017511	ENSPMRG00000017521	ENSPMRG00000017525	ENSPMRG00000017535	ENSPMRG00000017541	ENSPMRG00000017551	ENSPMRG00000017565	UBQLN4 (ENSPMRG00000017572) #18	LAMTOR2 (ENSPMRG00000017582) #19	RAB25 (ENSPMRG00000017595) #20	ENSPMRG00000017624	ENSPMRG00000017630	MEX3A (ENSPMRG00000017636) #21	LMNA (ENSPMRG00000017646) #22	ENSPMRG00000017660 #23	ENSPMRG00000017669 #23	ENSPMRG00000017683 #23	SLC25A44 (ENSPMRG00000017691) #25	PMF1 (ENSPMRG00000017696) #26	ENSPMRG00000017700	ENSPMRG00000017706	VANGL2 (ENSPMRG00000017711)	ENSPMRG00000017721	NHLH1 (ENSPMRG00000017730)	NCSTN (ENSPMRG00000017736)	COPA (ENSPMRG00000017757)	MEN1 (ENSPMRG00000017785)	ENSPMRG00000017794	ENSPMRG00000017800
tuatara	MODERN SPECIES	1930				ENSSPUG00000004101	ENSSPUG00000004095	RHBG (ENSSPUG00000003411)	MEF2D (ENSSPUG00000003141)	IQGAP3 (ENSSPUG00000002736)	NAXE (ENSSPUG00000002689)	GPATCH4 (ENSSPUG00000002674)	UBQLN4 (ENSSPUG00000002649) #18	LAMTOR2 (ENSSPUG00000002639) #19	RAB25 (ENSSPUG00000002555) #20	ENSSPUG00000002526	MEX3A (ENSSPUG00000002522) #21	LMNA (ENSSPUG00000002510) #22	SEMA4A (ENSSPUG00000002416) #23	SLC25A44 (ENSSPUG00000002391) #25	PMF1 (ENSSPUG00000002356) #26	PAQR6 (ENSSPUG00000002286) #28	SMG5 (ENSSPUG00000002260) #29	TMEM79 (ENSSPUG00000002207) #30	GLMP (ENSSPUG00000002191) #31	CCT3 (ENSSPUG00000002180) #32	SSR2 (ENSSPUG00000002144) #17	ARHGEF2 (ENSSPUG00000002103) #16	ENSSPUG00000002083	PIAS3 (ENSSPUG00000001929)	NUDT17 (ENSSPUG00000001888)	POLR3C (ENSSPUG00000001834)	RNF115 (ENSSPUG00000001822)
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Archosauria	ANCESTRAL SPECIES	28	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00510000047412.a #14	ENSGT00940000160132 #13	ENSGT00940000159088 #12	ENSGT00390000016256	ENSGT00530000064067
Aves	ANCESTRAL SPECIES	31	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00510000047412.a #14	ENSGT00940000160132 #13	ENSGT00940000159088 #12	ENSGT00390000016256	ENSGT00530000064067
Neognathae	ANCESTRAL SPECIES	28	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17
Galloanserae	ANCESTRAL SPECIES	36	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000155176	ENSGT00940000157759	ENSGT00940000157585	ENSGT01040000240780	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a
Anatidae	ANCESTRAL SPECIES	81			ENSGT00940000167106	ENSGT00940000157343.g	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463.b	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00960000189418	ENSGT00940000154566 #29	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610
Pink-footed goose	MODERN SPECIES	362	ENSABRG00000006524	ENSABRG00000006516	ENSABRG00000006508	HAPLN2 (ENSABRG00000006504)	RHBG (ENSABRG00000006501)	MEF2D (ENSABRG00000006481)	ENSABRG00000006474	IQGAP3 (ENSABRG00000006462)	ENSABRG00000006447	ENSABRG00000006441	LAMTOR2 (ENSABRG00000006434) #19	UBQLN4 (ENSABRG00000006418) #18	RAB25 (ENSABRG00000006405) #20	ENSABRG00000006400	MEX3A (ENSABRG00000006394) #21	LMNA (ENSABRG00000006382) #22	SEMA4A (ENSABRG00000006369) #23	SLC25A44 (ENSABRG00000006360) #25	PMF1 (ENSABRG00000006352) #26	ENSABRG00000006348 #27	SMG5 (ENSABRG00000006336) #29	HORMAD1 (ENSABRG00000006294)	GOLPH3L (ENSABRG00000006261)	ENSA (ENSABRG00000006255)	MCL1 (ENSABRG00000006246)
Duck	MODERN SPECIES	17										ENSAPLG00000030819	HAPLN2 (ENSAPLG00000016119)	MEF2D (ENSAPLG00000007271)	IQGAP3 (ENSAPLG00000007690)	UBQLN4 (ENSAPLG00000009055) #18	MEX3A (ENSAPLG00000009476) #21	LMNA (ENSAPLG00000009487) #22	ENSAPLG00000022171	SMG5 (ENSAPLG00000010263) #29	HORMAD1 (ENSAPLG00000009738)	GOLPH3L (ENSAPLG00000009987)	ENSA (ENSAPLG00000010036)	ENSAPLG00000021823	ENSAPLG00000002706	PRPF3 (ENSAPLG00000002440)	ETV3 (ENSAPLG00000023696)	ENSAPLG00000019128	OTUD7B (ENSAPLG00000004627)	VPS45 (ENSAPLG00000002351)	PLEKHO1 (ENSAPLG00000002526)	ANP32E (ENSAPLG00000002620)	ENSAPLG00000020034
Phasianidae	ANCESTRAL SPECIES	30	ENSGT00940000165753	ENSGT00510000048165	ENSGT00950000182940.b.a.b	ENSGT00870000136537	ENSGT00940000160276	ENSGT00940000159172	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00960000189418	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000010993	ENSGT00950000182900.D	ENSGT00390000000230	ENSGT00390000019377.a	ENSGT00940000159936	ENSGT00940000159186	ENSGT00940000157083	ENSGT00940000161411
Phasianidae_b	ANCESTRAL SPECIES	38	ENSGT00940000165753	ENSGT00510000048165	ENSGT00950000182940.b.a.b	ENSGT00870000136537	ENSGT00940000160276	ENSGT00940000159172	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00440000037582
Chicken	MODERN SPECIES	17	MTMR11 (ENSGALG00010028752)	OTUD7B (ENSGALG00010028750)	ENSGALG00010027297	ENSGALG00010027354	ARHGEF2 (ENSGALG00010027310) #16	IQGAP3 (ENSGALG00010028108)	TTC24 (ENSGALG00010028097)	ENSGALG00010028094	NAXE (ENSGALG00010028088)	ENSGALG00010028085	UBQLN4 (ENSGALG00010028081) #18	LAMTOR2 (ENSGALG00010028078) #19	RAB25 (ENSGALG00010028075) #20	ENSGALG00010028072	MEX3A (ENSGALG00010028070) #21	ENSGALG00010028066 #22	ENSGALG00010027294	ENSGALG00010027978	ENSGALG00010027300	ANP32E (ENSGALG00010028507)	PLEKHO1 (ENSGALG00010028502)	VPS45 (ENSGALG00010028500)	ENSGALG00010028494	ENSGALG00010028492	NECTIN4 (ENSGALG00010028490)	ARHGAP30 (ENSGALG00010028486)	USF1 (ENSGALG00010028485)	F11R (ENSGALG00010028480)	CASQ1 (ENSGALG00010028479)	PEA15 (ENSGALG00010028478)	ENSGALG00010028476
Japanese quail	MODERN SPECIES	17							ANP32E (ENSCJPG00005013913)	PLEKHO1 (ENSCJPG00005013914)	VPS45 (ENSCJPG00005013915)	ENSCJPG00005013916	UBQLN4 (ENSCJPG00005013917) #18	LAMTOR2 (ENSCJPG00005013918) #19	RAB25 (ENSCJPG00005013919) #20	ENSCJPG00005013920	MEX3A (ENSCJPG00005013921) #21	LMNA (ENSCJPG00005013923) #22	SEMA4A (ENSCJPG00005013924) #23	SLC25A44 (ENSCJPG00005013925) #25	ENSCJPG00005013926	SMG5 (ENSCJPG00005013927) #29	TMEM79 (ENSCJPG00005013928) #30	GLMP (ENSCJPG00005013929) #31	CCT3 (ENSCJPG00005013930) #32	PEX19 (ENSCJPG00005013931)	ENSCJPG00005013932	PEA15 (ENSCJPG00005013933)	CASQ1 (ENSCJPG00005013934)	ENSCJPG00005013966	F11R (ENSCJPG00005013969)	USF1 (ENSCJPG00005013970)	ENSCJPG00005013971
Neognathae_b	ANCESTRAL SPECIES	33	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17
Neognathae_c	ANCESTRAL SPECIES	33	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b.z	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509.c #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT01030000234542.b.a.a.a.b	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324
Golden eagle	MODERN SPECIES	25	ENSACCG00020001921	ENSACCG00020001947	ENSACCG00020001960	BCAN (ENSACCG00020001979)	HAPLN2 (ENSACCG00020002002)	RHBG (ENSACCG00020002042)	MEF2D (ENSACCG00020002103)	IQGAP3 (ENSACCG00020002188)	NAXE (ENSACCG00020002232)	GPATCH4 (ENSACCG00020002248)	UBQLN4 (ENSACCG00020002302) #18	LAMTOR2 (ENSACCG00020002334) #19	RAB25 (ENSACCG00020002353) #20	ENSACCG00020002373	MEX3A (ENSACCG00020002384) #21	LMNA (ENSACCG00020002398) #22	SEMA4A (ENSACCG00020002423) #23	SLC25A44 (ENSACCG00020002449) #25	ENSACCG00020002471	ENSACCG00020002491 #27	PAQR6 (ENSACCG00020002533) #28	SMG5 (ENSACCG00020002562) #29	TMEM79 (ENSACCG00020002589) #30	GLMP (ENSACCG00020002603) #31	CCT3 (ENSACCG00020002624) #32	SSR2 (ENSACCG00020002642) #17	TPM3 (ENSACCG00020002664)	ENSACCG00020002693	C1orf43 (ENSACCG00020008270)	UBAP2L (ENSACCG00020008313)	HAX1 (ENSACCG00020008371)
Kakapo	MODERN SPECIES	60	BCAN (ENSSHBG00005016921)	HAPLN2 (ENSSHBG00005016914)	RHBG (ENSSHBG00005016897)	MEF2D (ENSSHBG00005016873)	ENSSHBG00005016853	ENSSHBG00005016844	ENSSHBG00005016834	ENSSHBG00005016829	NAXE (ENSSHBG00005016822)	GPATCH4 (ENSSHBG00005016818)	UBQLN4 (ENSSHBG00005016810) #18	LAMTOR2 (ENSSHBG00005016803) #19	RAB25 (ENSSHBG00005016798) #20	ENSSHBG00005016791	MEX3A (ENSSHBG00005016781) #21	LMNA (ENSSHBG00005016768) #22	ENSSHBG00005016763 #23	ENSSHBG00005016749 #23	SLC25A44 (ENSSHBG00005016737) #25	PMF1 (ENSSHBG00005016733) #26	BGLAP (ENSSHBG00005016730) #27	SMG5 (ENSSHBG00005015374) #29	TMEM79 (ENSSHBG00005015292) #30	CCT3 (ENSSHBG00005015253) #32	SSR2 (ENSSHBG00005015244) #17	APH1A (ENSSHBG00005015233)	ENSSHBG00005015053	ENSSHBG00005015032	PRPF3 (ENSSHBG00005015012)	RPRD2 (ENSSHBG00005014997)	ENSSHBG00005014679
Passeriformes	ANCESTRAL SPECIES	37	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT01030000234542.b.a.a.a.b	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000162648	ENSGT00940000160804	ENSGT00940000161919	ENSGT00940000159107
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000154566.i #29	ENSGT00390000002390.b #30	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000162648	ENSGT00940000160804	ENSGT00940000161919
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000154566.i #29	ENSGT00390000002390.b #30	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000162648	ENSGT00940000160804	ENSGT00940000161919
Passeroidea	ANCESTRAL SPECIES	28	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000154566.i #29	ENSGT00390000002390.b #30	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000162648	ENSGT00940000160804	ENSGT00940000161919
Common canary	MODERN SPECIES	81		ENSSCAG00000014510	ENSSCAG00000014506	ENSSCAG00000014502	HAPLN2 (ENSSCAG00000014493)	RHBG (ENSSCAG00000014483)	MEF2D (ENSSCAG00000014461)	IQGAP3 (ENSSCAG00000013560)	NAXE (ENSSCAG00000013155)	ENSSCAG00000013149	UBQLN4 (ENSSCAG00000013141) #18	LAMTOR2 (ENSSCAG00000013138) #19	RAB25 (ENSSCAG00000013131) #20	ENSSCAG00000013124	MEX3A (ENSSCAG00000013118) #21	LMNA (ENSSCAG00000013107) #22	SEMA4A (ENSSCAG00000013096) #23	SLC25A44 (ENSSCAG00000013089) #25	PMF1 (ENSSCAG00000013084) #26	BGLAP (ENSSCAG00000013078) #27	SMG5 (ENSSCAG00000013067) #29	TMEM79 (ENSSCAG00000013060) #30	ENSSCAG00000013039	C1orf43 (ENSSCAG00000013023)	UBAP2L (ENSSCAG00000012983)	HAX1 (ENSSCAG00000012964)	AQP10 (ENSSCAG00000012955)	ATP8B2 (ENSSCAG00000012942)	IL6R (ENSSCAG00000012928)	SHE (ENSSCAG00000012923)	UBE2Q1 (ENSSCAG00000012918)
Zebra finch	MODERN SPECIES	18	ENSTGUG00000022793	ENSTGUG00000026517	BCAN (ENSTGUG00000023506)	HAPLN2 (ENSTGUG00000025869)	RHBG (ENSTGUG00000003473)	MEF2D (ENSTGUG00000003481)	IQGAP3 (ENSTGUG00000003501)	ENSTGUG00000003613	NAXE (ENSTGUG00000003621)	ENSTGUG00000003636	UBQLN4 (ENSTGUG00000003644) #18	LAMTOR2 (ENSTGUG00000003670) #19	RAB25 (ENSTGUG00000003675) #20	ENSTGUG00000003680	MEX3A (ENSTGUG00000003692) #21	LMNA (ENSTGUG00000015888) #22	SEMA4A (ENSTGUG00000003695) #23	ENSTGUG00000018930	SLC25A44 (ENSTGUG00000015885) #25	ENSTGUG00000024980 #26	BGLAP (ENSTGUG00000003747) #27	SMG5 (ENSTGUG00000003748) #29	TMEM79 (ENSTGUG00000022613) #30	TPM3 (ENSTGUG00000003785)	ENSTGUG00000029068	UBAP2L (ENSTGUG00000003834)	HAX1 (ENSTGUG00000003919)	AQP10 (ENSTGUG00000020695)	ATP8B2 (ENSTGUG00000003921)	IL6R (ENSTGUG00000024535)	SHE (ENSTGUG00000004055)
Medium ground finch	MODERN SPECIES	247	ENSGFOG00000010024	ENSGFOG00000010028	ENSGFOG00000010037	BCAN (ENSGFOG00000010058)	HAPLN2 (ENSGFOG00000010066)	RHBG (ENSGFOG00000010070)	MEF2D (ENSGFOG00000010083)	IQGAP3 (ENSGFOG00000010097)	ENSGFOG00000010121	NAXE (ENSGFOG00000010126)	UBQLN4 (ENSGFOG00000010134) #18	LAMTOR2 (ENSGFOG00000010143) #19	RAB25 (ENSGFOG00000010146) #20	ENSGFOG00000010153	MEX3A (ENSGFOG00000010158) #21	LMNA (ENSGFOG00000010161) #22	SEMA4A (ENSGFOG00000010172) #23	SLC25A44 (ENSGFOG00000010182) #25	SMG5 (ENSGFOG00000010189) #29	TMEM79 (ENSGFOG00000010207) #30	TPM3 (ENSGFOG00000010212)	C1orf43 (ENSGFOG00000010231)	UBAP2L (ENSGFOG00000010247)	ENSGFOG00000010280	AQP10 (ENSGFOG00000010284)	ATP8B2 (ENSGFOG00000010292)	IL6R (ENSGFOG00000010325)	SHE (ENSGFOG00000010337)	UBE2Q1 (ENSGFOG00000010349)	CHRNB2 (ENSGFOG00000010362)	ADAR (ENSGFOG00000010376)
Flycatcher	MODERN SPECIES	17	ENSFALG00000003229	ENSFALG00000028936	ENSFALG00000025964	ENSFALG00000003292	ENSFALG00000028856	RHBG (ENSFALG00000003358)	MEF2D (ENSFALG00000013606)	IQGAP3 (ENSFALG00000002642)	ENSFALG00000002636	NAXE (ENSFALG00000002625)	UBQLN4 (ENSFALG00000002609) #18	LAMTOR2 (ENSFALG00000002604) #19	RAB25 (ENSFALG00000002597) #20	ENSFALG00000002594	MEX3A (ENSFALG00000014982) #21	LMNA (ENSFALG00000002586) #22	SEMA4A (ENSFALG00000002573) #23	SLC25A44 (ENSFALG00000002568) #25	PMF1 (ENSFALG00000028987) #26	ENSFALG00000024781 #27	ENSFALG00000002560 #29	ENSFALG00000002555 #17	ENSFALG00000002550 #32	ENSFALG00000024237	ENSFALG00000024658	ENSFALG00000024050	FLAD1 (ENSFALG00000001270)	CKS1B (ENSFALG00000024948)	SHC1 (ENSFALG00000001262)	PYGO2 (ENSFALG00000015227)	PBXIP1 (ENSFALG00000001259)
Great tit	MODERN SPECIES	17	CRABP2 (ENSPMJG00000009888)	ENSPMJG00000009890	ENSPMJG00000009894	ENSPMJG00000009896	BCAN (ENSPMJG00000009899)	HAPLN2 (ENSPMJG00000009900)	RHBG (ENSPMJG00000009901)	MEF2D (ENSPMJG00000009914)	IQGAP3 (ENSPMJG00000009919)	ENSPMJG00000000065	GPATCH4 (ENSPMJG00000000160)	UBQLN4 (ENSPMJG00000000181) #18	RAB25 (ENSPMJG00000000212) #20	ENSPMJG00000000220	MEX3A (ENSPMJG00000000236) #21	LMNA (ENSPMJG00000000245) #22	SEMA4A (ENSPMJG00000000261) #23	SLC25A44 (ENSPMJG00000000271) #25	PMF1 (ENSPMJG00000000278) #26	ENSPMJG00000000280 #27	SMG5 (ENSPMJG00000000283) #29	TMEM79 (ENSPMJG00000000349) #30	TPM3 (ENSPMJG00000000373)	ENSPMJG00000000449	C1orf43 (ENSPMJG00000000460)	UBAP2L (ENSPMJG00000000484)	HAX1 (ENSPMJG00000000564)	AQP10 (ENSPMJG00000000574)	ATP8B2 (ENSPMJG00000000586)	IL6R (ENSPMJG00000000621)	SHE (ENSPMJG00000000635)
African ostrich	MODERN SPECIES	347																LMNA (ENSSCUG00000003819) #22	SLC25A44 (ENSSCUG00000003817) #25	ENSSCUG00000003814	ENSSCUG00000003811 #28	SMG5 (ENSSCUG00000003808) #29	CCT3 (ENSSCUG00000003804) #32	SSR2 (ENSSCUG00000003801) #17	KHDC4 (ENSSCUG00000003793) #14	RIT1 (ENSSCUG00000003792) #13	SYT11 (ENSSCUG00000003791) #12	ENSSCUG00000003718	MSTO1 (ENSSCUG00000003686)	DAP3 (ENSSCUG00000003685)	ASH1L (ENSSCUG00000003684)	ENSSCUG00000003682	FDPS (ENSSCUG00000003679)
Australian saltwater crocodile	MODERN SPECIES	15	ENSCPRG00005007931	ENSCPRG00005007929	BCAN (ENSCPRG00005007910)	HAPLN2 (ENSCPRG00005007895)	RHBG (ENSCPRG00005007888)	MEF2D (ENSCPRG00005007870)	IQGAP3 (ENSCPRG00005007853)	TTC24 (ENSCPRG00005007848)	NAXE (ENSCPRG00005007843)	GPATCH4 (ENSCPRG00005007835)	UBQLN4 (ENSCPRG00005007826) #18	LAMTOR2 (ENSCPRG00005007823) #19	RAB25 (ENSCPRG00005007819) #20	ENSCPRG00005007809	MEX3A (ENSCPRG00005007807) #21	LMNA (ENSCPRG00005007803) #22	BGLAP (ENSCPRG00005007799) #27	ENSCPRG00005007797	ENSCPRG00005007796 #28	ENSCPRG00005007795 #28	SMG5 (ENSCPRG00005007786) #29	TMEM79 (ENSCPRG00005007775) #30	GLMP (ENSCPRG00005007771) #31
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Chinese turtle	MODERN SPECIES	370	CRABP2 (ENSPSIG00000007402)	ENSPSIG00000007701	ENSPSIG00000001994	BCAN (ENSPSIG00000008257)	ENSPSIG00000009263	ENSPSIG00000009383	RHBG (ENSPSIG00000009777)	MEF2D (ENSPSIG00000010381)	NAXE (ENSPSIG00000010506)	IQGAP3 (ENSPSIG00000010888)	TTC24 (ENSPSIG00000010973)	GPATCH4 (ENSPSIG00000011317)	UBQLN4 (ENSPSIG00000012561) #18	RAB25 (ENSPSIG00000013051) #20	ENSPSIG00000013143	LMNA (ENSPSIG00000013224) #22	ENSPSIG00000014092	SEMA4A (ENSPSIG00000014103) #23	SLC25A44 (ENSPSIG00000014778) #25	PMF1 (ENSPSIG00000014836) #26	BGLAP (ENSPSIG00000015018) #27	PAQR6 (ENSPSIG00000015029) #28	SMG5 (ENSPSIG00000015198) #29	TMEM79 (ENSPSIG00000015365) #30	GLMP (ENSPSIG00000015712) #31	CCT3 (ENSPSIG00000015722) #32	ENSPSIG00000016401	ENSPSIG00000001047	ENSPSIG00000016408	KLHDC9 (ENSPSIG00000016412)	PFDN2 (ENSPSIG00000016446)
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.a #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000163126	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00960000189418	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.a #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Goode s thornscrub tortoise	MODERN SPECIES	16	ENSGEVG00005014250	ENSGEVG00005014272	ENSGEVG00005014294	BCAN (ENSGEVG00005014368)	HAPLN2 (ENSGEVG00005014721)	RHBG (ENSGEVG00005015040)	MEF2D (ENSGEVG00005015371)	IQGAP3 (ENSGEVG00005015449)	NAXE (ENSGEVG00005016400)	GPATCH4 (ENSGEVG00005016428)	UBQLN4 (ENSGEVG00005016451) #18	LAMTOR2 (ENSGEVG00005016481) #19	RAB25 (ENSGEVG00005016498) #20	ENSGEVG00005016590	MEX3A (ENSGEVG00005016649) #21	LMNA (ENSGEVG00005016668) #22	SEMA4A (ENSGEVG00005016697) #23	SLC25A44 (ENSGEVG00005016726) #25	PMF1 (ENSGEVG00005016760) #26	ENSGEVG00005016778	PAQR6 (ENSGEVG00005016803) #28	SMG5 (ENSGEVG00005016873) #29	TMEM79 (ENSGEVG00005016914) #30	GLMP (ENSGEVG00005017028) #31	CCT3 (ENSGEVG00005017052) #32	SSR2 (ENSGEVG00005017086) #17	ARHGEF2 (ENSGEVG00005017131) #16	ENSGEVG00005017171	RXFP4 (ENSGEVG00005017219)	ANKRD35 (ENSGEVG00005017285)	PIAS3 (ENSGEVG00005017589)
Abingdon island giant tortoise	MODERN SPECIES	1671	ENSCABG00000017759	ENSCABG00000017765	HAPLN2 (ENSCABG00000017810)	RHBG (ENSCABG00000017984)	MEF2D (ENSCABG00000017991)	IQGAP3 (ENSCABG00000018011)	NAXE (ENSCABG00000018099)	ENSCABG00000018102	ENSCABG00000018117	UBQLN4 (ENSCABG00000018121) #18	LAMTOR2 (ENSCABG00000018126) #19	RAB25 (ENSCABG00000018130) #20	ENSCABG00000018133	ENSCABG00000018135	MEX3A (ENSCABG00000018137) #21	LMNA (ENSCABG00000018140) #22	SEMA4A (ENSCABG00000018143) #23	SLC25A44 (ENSCABG00000018148) #25	PMF1 (ENSCABG00000018150) #26	ENSCABG00000018151 #28	ENSCABG00000018152 #28	SMG5 (ENSCABG00000018154) #29	TMEM79 (ENSCABG00000018156) #30	ENSCABG00000018157 #31	ENSCABG00000018158 #31	CCT3 (ENSCABG00000018159) #32	SSR2 (ENSCABG00000018160) #17	ARHGEF2 (ENSCABG00000018164) #16	ENSCABG00000018294	RXFP4 (ENSCABG00000018295)	ENSCABG00000018296
Emydidae	DUPLICATION
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000157244.g #22
Three-toed box turtle	MODERN SPECIES	2994																ENSTMTG00000018887 #22
Emydidae	DUPLICATION
Emydidae	DUPLICATION
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000157244.h.a.a #22
painted turtle	MODERN SPECIES	1883																ENSCPBG00000011091 #22
Three-toed box turtle	MODERN SPECIES	1691																ENSTMTG00000020139 #22
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000157244.h.a.b #22
painted turtle	MODERN SPECIES	1741																ENSCPBG00000003754 #22
Emydidae	ANCESTRAL SPECIES	18	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a	ENSGT00940000159463	ENSGT00950000183076.a.b.b.a.b	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244.h.b #22	ENSGT00940000161509 #23	ENSGT00940000155399 #25	ENSGT00940000162656 #26	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.a #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
painted turtle	MODERN SPECIES	785	KHDC4 (ENSCPBG00000025715) #14	RIT1 (ENSCPBG00000025719) #13	SYT11 (ENSCPBG00000025720) #12	ENSCPBG00000025730	MSTO1 (ENSCPBG00000025784)	DAP3 (ENSCPBG00000025787)	ENSCPBG00000025790	IQGAP3 (ENSCPBG00000025794)	NAXE (ENSCPBG00000025800)	GPATCH4 (ENSCPBG00000025803)	UBQLN4 (ENSCPBG00000025810) #18	LAMTOR2 (ENSCPBG00000025814) #19	RAB25 (ENSCPBG00000025817) #20	ENSCPBG00000025819	MEX3A (ENSCPBG00000025821) #21	ENSCPBG00000025823 #22	SEMA4A (ENSCPBG00000025830) #23	SLC25A44 (ENSCPBG00000025837) #25	PMF1 (ENSCPBG00000025840) #26	BGLAP (ENSCPBG00000025842) #27	PAQR6 (ENSCPBG00000025845) #28	SMG5 (ENSCPBG00000025848) #29	TMEM79 (ENSCPBG00000025854) #30	GLMP (ENSCPBG00000025860) #31	CCT3 (ENSCPBG00000025861) #32	SSR2 (ENSCPBG00000025864) #17	ARHGEF2 (ENSCPBG00000025867) #16	ENSCPBG00000025870
Anura	ANCESTRAL SPECIES	302										ENSGT01070000257261	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272	ENSGT00390000011582	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23
Frog	MODERN SPECIES	8	c1orf43 (ENSXETG00000020733)	ubap2l (ENSXETG00000015342)	ENSXETG00000003406	ENSXETG00000032437	ENSXETG00000033258	ENSXETG00000041624	ENSXETG00000049031	hax1 (ENSXETG00000030686)	ENSXETG00000041583	ENSXETG00000041733	nit1 (ENSXETG00000012699)	pfdn2 (ENSXETG00000040839)	klhdc9 (ENSXETG00000012703)	mex3a (ENSXETG00000012704) #21	ENSXETG00000043762	lmna (ENSXETG00000024161) #22	ENSXETG00000048424	sema4a (ENSXETG00000018164) #23	ENSXETG00000042509	ENSXETG00000039965	ufc1 (ENSXETG00000017667)	usp21 (ENSXETG00000017669)	b4galt3 (ENSXETG00000042843)	ENSXETG00000034513	ppox (ENSXETG00000017673)	ENSXETG00000044288	dnz1 (ENSXETG00000036687)	adamts4 (ENSXETG00000017676)	ENSXETG00000045055	ENSXETG00000047100	ndufs2 (ENSXETG00000025925)
Leishan spiny toad	MODERN SPECIES	4	B4GALT3 (ENSLLEG00000016905)	PPOX (ENSLLEG00000016330)	ENSLLEG00000016146	ENSLLEG00000016119	ADAMTS4 (ENSLLEG00000016043)	NDUFS2 (ENSLLEG00000015940)	ENSLLEG00000015883	DEDD (ENSLLEG00000015831)	NIT1 (ENSLLEG00000015737)	PFDN2 (ENSLLEG00000015547)	KLHDC9 (ENSLLEG00000015496)	MEX3A (ENSLLEG00000015368) #21	ENSLLEG00000015289	ENSLLEG00000015252	ENSLLEG00000015219	LMNA (ENSLLEG00000024512) #22	ENSLLEG00000024433	SEMA4A (ENSLLEG00000024301) #23	ENSLLEG00000024273	KCNN3 (ENSLLEG00000024129)	ENSLLEG00000024069	ADAR (ENSLLEG00000022684)	CHRNB2 (ENSLLEG00000022363)	ENSLLEG00000022295	SHE (ENSLLEG00000022092)	ENSLLEG00000022061	IL6R (ENSLLEG00000021954)	AQP10 (ENSLLEG00000021832)	HAX1 (ENSLLEG00000021641)	C1orf43 (ENSLLEG00000021373)	UBAP2L (ENSLLEG00000020043)
Coelacanth	MODERN SPECIES	815				rhbg (ENSLACG00000001771)	hapln2 (ENSLACG00000004507)	bcan (ENSLACG00000005636)	IQGAP3 (ENSLACG00000007771)	TTC24 (ENSLACG00000009122)	NAXE (ENSLACG00000009488)	GPATCH4 (ENSLACG00000009700)	UBQLN4 (ENSLACG00000010468) #18	LAMTOR2 (ENSLACG00000010926) #19	RAB25 (ENSLACG00000011157) #20	rab11al (ENSLACG00000011380)	MEX3A (ENSLACG00000011943) #21	LMNA (ENSLACG00000012778) #22	ENSLACG00000013812	SLC25A44 (ENSLACG00000014139) #25	PMF1 (ENSLACG00000014303) #26	ENSLACG00000014491