Murinae	ANCESTRAL SPECIES	5	ENSGT00900000141033.b.b.u #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #29	ENSGT00940000154566 #30	ENSGT00390000002390.b #31	ENSGT00390000005131 #32	ENSGT00570000079224 #33	ENSGT00390000012524 #34	ENSGT00950000182844.b.b.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346	ENSGT00390000007227.a
Mus	ANCESTRAL SPECIES	7	ENSGT00900000141033.b.b.v ##7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #29	ENSGT00940000154566 #30	ENSGT00390000002390.b #31	ENSGT00390000005131 #32	ENSGT00570000079224 #33	ENSGT00390000012524 #34	ENSGT00950000182844.b.b.a.b ##36	ENSGT00950000182844.b.b.a.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Mus_A	ANCESTRAL SPECIES	9	ENSGT00900000141033.b.b.v ##7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #29	ENSGT00940000154566 #30	ENSGT00390000002390.b #31	ENSGT00390000005131.e #32	ENSGT00570000079224 #33	ENSGT00390000012524 #34	ENSGT00950000182844.b.b.a.b ##36	ENSGT00950000182844.b.b.a.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Mus_B	ANCESTRAL SPECIES	8	ENSGT00900000141033.b.b.v ##7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #29	ENSGT00940000154566 #30	ENSGT00390000002390.b #31	ENSGT00390000005131.e #32	ENSGT00570000079224 #33	ENSGT00390000012524 #34	ENSGT00950000182844.b.b.a.b ##36	ENSGT00950000182844.b.b.a.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
Mouse	MODERN SPECIES	12	Rusc1 (ENSMUSG00000041263) #7	Ash1l (ENSMUSG00000028053) #8	Dap3 (ENSMUSG00000068921) #9	Msto1 (ENSMUSG00000068922) #10	Gon4l (ENSMUSG00000054199) #11	Syt11 (ENSMUSG00000068923) #12	Rit1 (ENSMUSG00000028057) #13	Khdc4 (ENSMUSG00000028060) #14	Rxfp4 (ENSMUSG00000049741) #15	Arhgef2 (ENSMUSG00000028059) #16	Ssr2 (ENSMUSG00000041355) #17	Ubqln4 (ENSMUSG00000008604) #18	Lamtor2 (ENSMUSG00000028062) #19	Rab25 (ENSMUSG00000008601) #20	Mex3a (ENSMUSG00000074480) #21	Lmna (ENSMUSG00000028063) #22	Sema4a (ENSMUSG00000028064) #23	Slc25a44 (ENSMUSG00000050144) #24	Pmf1 (ENSMUSG00000028066) #25	Bglap (ENSMUSG00000074483) #26	Bglap2 (ENSMUSG00000074486) #27	Bglap3 (ENSMUSG00000074489) #28	Paqr6 (ENSMUSG00000041423) #29	Smg5 (ENSMUSG00000001415) #30	Tmem79 (ENSMUSG00000001420) #31	Glmp (ENSMUSG00000001418) #32	Cct3 (ENSMUSG00000001416) #33	Tsacc (ENSMUSG00000010538) #34	Gm38392 (ENSMUSG00000103766) #35	Rhbg (ENSMUSG00000104445) #36	Mef2d (ENSMUSG00000001419) #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b.v ##7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #29	ENSGT00940000154566 #30	ENSGT00390000002390.b #31	ENSGT00390000005131.e #32	ENSGT00570000079224 #33	ENSGT00390000012524 #34	ENSGT00950000182844.b.b.a.b ##36	ENSGT00950000182844.b.b.a.a #36	ENSGT00940000159463 #37	ENSGT00950000183076.a.b.b.a.b	ENSGT00730000111346
spretus	MODERN SPECIES	12	MGP_SPRETEiJ_G0026127 ##7	Ash1l (MGP_SPRETEiJ_G0026126) #8	Dap3 (MGP_SPRETEiJ_G0026125) #9	Msto1 (MGP_SPRETEiJ_G0026124) #10	Gon4l (MGP_SPRETEiJ_G0026123) #11	Syt11 (MGP_SPRETEiJ_G0026122) #12	Rit1 (MGP_SPRETEiJ_G0026121) #13	Khdc4 (MGP_SPRETEiJ_G0026120) #14	Rxfp4 (MGP_SPRETEiJ_G0026119) #15	Arhgef2 (MGP_SPRETEiJ_G0026118) #16	Ssr2 (MGP_SPRETEiJ_G0026117) #17	Ubqln4 (MGP_SPRETEiJ_G0026116) #18	Lamtor2 (MGP_SPRETEiJ_G0026115) #19	Rab25 (MGP_SPRETEiJ_G0026114) #20	MGP_SPRETEiJ_G0026113 #21	Lmna (MGP_SPRETEiJ_G0026112) #22	Sema4a (MGP_SPRETEiJ_G0026111) #23	Slc25a44 (MGP_SPRETEiJ_G0026110) #24	Pmf1 (MGP_SPRETEiJ_G0026109) #25	MGP_SPRETEiJ_G0026107 #26	MGP_SPRETEiJ_G0026108 #26	MGP_SPRETEiJ_G0026106 #26	Paqr6 (MGP_SPRETEiJ_G0026105) #29	Smg5 (MGP_SPRETEiJ_G0026104) #30	Tmem79 (MGP_SPRETEiJ_G0026103) #31	Glmp (MGP_SPRETEiJ_G0026102) #32	Cct3 (MGP_SPRETEiJ_G0026101) #33	Tsacc (MGP_SPRETEiJ_G0026100) #34	MGP_SPRETEiJ_G0026099 ##36	Rhbg (MGP_SPRETEiJ_G0026098) #36	Mef2d (MGP_SPRETEiJ_G0026097) #37
Steppe mouse	MODERN SPECIES	2494						Syt11 (ENSMSIG00000028436) #12	Rit1 (ENSMSIG00000028448) #13	Khdc4 (ENSMSIG00000028451) #14	ENSMSIG00000028469	Arhgef2 (ENSMSIG00000028473) #16	Ssr2 (ENSMSIG00000029173) #17	Ubqln4 (ENSMSIG00000029187) #18	Lamtor2 (ENSMSIG00000029190) #19	Rab25 (ENSMSIG00000029192) #20	ENSMSIG00000029193 #21	Lmna (ENSMSIG00000029196) #22	Sema4a (ENSMSIG00000029207) #23	ENSMSIG00000029223	Slc25a44 (ENSMSIG00000029225) #24	Pmf1 (ENSMSIG00000029235) #25	ENSMSIG00000029238 #26	ENSMSIG00000029245 #29	Smg5 (ENSMSIG00000029250) #30	Tmem79 (ENSMSIG00000029273) #31	Glmp (ENSMSIG00000029280) #32	Cct3 (ENSMSIG00000029307) #33	ENSMSIG00000029349 #34
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0025184 ##7	Ash1l (MGP_CAROLIEiJ_G0025183) #8	Dap3 (MGP_CAROLIEiJ_G0025182) #9	Msto1 (MGP_CAROLIEiJ_G0025181) #10	MGP_CAROLIEiJ_G0025180 #11	Syt11 (MGP_CAROLIEiJ_G0025179) #12	Rit1 (MGP_CAROLIEiJ_G0025178) #13	Khdc4 (MGP_CAROLIEiJ_G0025177) #14	Rxfp4 (MGP_CAROLIEiJ_G0025176) #15	Arhgef2 (MGP_CAROLIEiJ_G0025175) #16	Ssr2 (MGP_CAROLIEiJ_G0025174) #17	Ubqln4 (MGP_CAROLIEiJ_G0025173) #18	Lamtor2 (MGP_CAROLIEiJ_G0025172) #19	Rab25 (MGP_CAROLIEiJ_G0025171) #20	Mex3a (MGP_CAROLIEiJ_G0025170) #21	Lmna (MGP_CAROLIEiJ_G0025169) #22	Sema4a (MGP_CAROLIEiJ_G0025168) #23	Slc25a44 (MGP_CAROLIEiJ_G0025167) #24	Pmf1 (MGP_CAROLIEiJ_G0025166) #25	MGP_CAROLIEiJ_G0025165 #26	Paqr6 (MGP_CAROLIEiJ_G0025164) #29	Smg5 (MGP_CAROLIEiJ_G0025163) #30	Tmem79 (MGP_CAROLIEiJ_G0025162) #31	Glmp (MGP_CAROLIEiJ_G0025161) #32	Cct3 (MGP_CAROLIEiJ_G0025160) #33	Tsacc (MGP_CAROLIEiJ_G0025159) #34	MGP_CAROLIEiJ_G0025158 ##36	Rhbg (MGP_CAROLIEiJ_G0025157) #36	Mef2d (MGP_CAROLIEiJ_G0025156) #37	Iqgap3 (MGP_CAROLIEiJ_G0025155)	MGP_CAROLIEiJ_G0025154
Shrew mouse	MODERN SPECIES	17	Rusc1 (MGP_PahariEiJ_G0026629) #7	MGP_PahariEiJ_G0026628 ##7	Ash1l (MGP_PahariEiJ_G0026627) #8	Dap3 (MGP_PahariEiJ_G0026626) #9	MGP_PahariEiJ_G0026625 #10	Gon4l (MGP_PahariEiJ_G0026624) #11	Syt11 (MGP_PahariEiJ_G0026623) #12	Rit1 (MGP_PahariEiJ_G0026622) #13	Khdc4 (MGP_PahariEiJ_G0026621) #14	Arhgef2 (MGP_PahariEiJ_G0026620) #16	Ssr2 (MGP_PahariEiJ_G0026619) #17	Ubqln4 (MGP_PahariEiJ_G0026618) #18	Lamtor2 (MGP_PahariEiJ_G0026617) #19	Rab25 (MGP_PahariEiJ_G0026616) #20	Mex3a (MGP_PahariEiJ_G0026615) #21	Lmna (MGP_PahariEiJ_G0026614) #22	Sema4a (MGP_PahariEiJ_G0026613) #23	Slc25a44 (MGP_PahariEiJ_G0026612) #24	Pmf1 (MGP_PahariEiJ_G0026611) #25	MGP_PahariEiJ_G0026609 #26	MGP_PahariEiJ_G0026610 #26	Paqr6 (MGP_PahariEiJ_G0026607) #29	Smg5 (MGP_PahariEiJ_G0026606) #30	Tmem79 (MGP_PahariEiJ_G0026605) #31	Glmp (MGP_PahariEiJ_G0026604) #32	MGP_PahariEiJ_G0026603 #33	Tsacc (MGP_PahariEiJ_G0026602) #34	MGP_PahariEiJ_G0026601 ##36	Rhbg (MGP_PahariEiJ_G0026600) #36	Mef2d (MGP_PahariEiJ_G0026599) #37	Iqgap3 (MGP_PahariEiJ_G0026598)
Rat	MODERN SPECIES	11	Pklr (ENSRNOG00000020420)	Fdps (ENSRNOG00000043377) #7	Ash1l (ENSRNOG00000020386) #8	Dap3 (ENSRNOG00000020373) #9	Msto1 (ENSRNOG00000020357) #10	Gon4l (ENSRNOG00000020297) #11	Syt11 (ENSRNOG00000020279) #12	Rit1 (ENSRNOG00000064584) #13	Khdc4 (ENSRNOG00000020139) #14	Arhgef2 (ENSRNOG00000020027) #16	Ssr2 (ENSRNOG00000019940) #17	Ubqln4 (ENSRNOG00000019933) #18	Lamtor2 (ENSRNOG00000019908) #19	Rab25 (ENSRNOG00000023640) #20	Mex3a (ENSRNOG00000058654) #21	Lmna (ENSRNOG00000019638) #22	Sema4a (ENSRNOG00000019737) #23	Slc25a44 (ENSRNOG00000025269) #24	Pmf1 (ENSRNOG00000019620) #25	Bglap (ENSRNOG00000019607) #26	Paqr6 (ENSRNOG00000026059) #29	Smg5 (ENSRNOG00000019590) #30	Tmem79 (ENSRNOG00000019414) #31	Glmp (ENSRNOG00000019281) #32	Cct3 (ENSRNOG00000019090) #33	Tsacc (ENSRNOG00000037552) #34	Rhbg (ENSRNOG00000019412) #36	Mef2d (ENSRNOG00000031778) #37	Iqgap3 (ENSRNOG00000027894)	Ttc24 (ENSRNOG00000028765)	Naxe (ENSRNOG00000019201)