Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224.z.a ##31	ENSGT00950000182844.b.b.a #32	ENSGT00940000159463 #33	ENSGT00950000183076.a.b.b.a.b #34	ENSGT00730000111346 #35	ENSGT00390000007227.a #36	ENSGT00960000190501
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224.y #31	ENSGT00950000182844.b.b.a #32	ENSGT00940000159463 #33	ENSGT00950000183076.a.b.b.a.b #34	ENSGT00730000111346 #35	ENSGT00390000007227.a #36	ENSGT00390000008765 #37
Guinea pig	MODERN SPECIES	10	RUSC1 (ENSCPOG00000032934) #7	ASH1L (ENSCPOG00000004801) #8	DAP3 (ENSCPOG00000030924) #9	MSTO1 (ENSCPOG00000004857) #10	ENSCPOG00000004859 #11	SYT11 (ENSCPOG00000004866) #12	RIT1 (ENSCPOG00000004868) #13	KHDC4 (ENSCPOG00000004870) #14	ENSCPOG00000032356 #15	ARHGEF2 (ENSCPOG00000025396) #16	SSR2 (ENSCPOG00000023729) #17	UBQLN4 (ENSCPOG00000002467) #18	LAMTOR2 (ENSCPOG00000032238) #19	RAB25 (ENSCPOG00000002472) #20	MEX3A (ENSCPOG00000020219) #21	LMNA (ENSCPOG00000023214) #22	SEMA4A (ENSCPOG00000015694) #23	SLC25A44 (ENSCPOG00000021129) #24	PMF1 (ENSCPOG00000015695) #25	BGLAP (ENSCPOG00000040505) #26	PAQR6 (ENSCPOG00000019726) #27	SMG5 (ENSCPOG00000015696) #28	TMEM79 (ENSCPOG00000033881) #29	GLMP (ENSCPOG00000032634) #30	CCT3 (ENSCPOG00000009131) #31	RHBG (ENSCPOG00000011135) #32	MEF2D (ENSCPOG00000036656) #33	IQGAP3 (ENSCPOG00000005361) #34	ENSCPOG00000012272 #35	NAXE (ENSCPOG00000024878) #36	ENSCPOG00000013701 #37
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #26	ENSGT00940000160567 #27	ENSGT00940000154566 #28	ENSGT00390000002390.b #29	ENSGT00390000005131 #30	ENSGT00570000079224.z.a ##31	ENSGT00950000182844.b.b.a #32	ENSGT00940000159463 #33	ENSGT00950000183076.a.b.b.a.b #34	ENSGT00730000111346 #35	ENSGT00390000007227.a #36	ENSGT00390000008765 #37
Degu	MODERN SPECIES	73	ASH1L (ENSODEG00000009920) #8	DAP3 (ENSODEG00000010674) #9	MSTO1 (ENSODEG00000011191) #10	ENSODEG00000010737	ENSODEG00000011008 #11	SYT11 (ENSODEG00000010870) #12	RIT1 (ENSODEG00000010128) #13	ENSODEG00000009528 #14	ENSODEG00000019992	ARHGEF2 (ENSODEG00000011373) #16	SSR2 (ENSODEG00000010659) #17	UBQLN4 (ENSODEG00000010901) #18	LAMTOR2 (ENSODEG00000010141) #19	RAB25 (ENSODEG00000009908) #20	MEX3A (ENSODEG00000009643) #21	LMNA (ENSODEG00000009369) #22	SEMA4A (ENSODEG00000009359) #23	SLC25A44 (ENSODEG00000009774) #24	PMF1 (ENSODEG00000011902) #25	BGLAP (ENSODEG00000010926) #26	PAQR6 (ENSODEG00000010747) #27	SMG5 (ENSODEG00000012237) #28	TMEM79 (ENSODEG00000012508) #29	GLMP (ENSODEG00000009800) #30	ENSODEG00000009974 #31	RHBG (ENSODEG00000009136) #32	MEF2D (ENSODEG00000010190) #33	IQGAP3 (ENSODEG00000010076) #34	ENSODEG00000009606 #35	ENSODEG00000010121 #36	ENSODEG00000010437 #37
Long-tailed chinchilla	MODERN SPECIES	252	FDPS (ENSCLAG00000005410)	RUSC1 (ENSCLAG00000005579) #7	ASH1L (ENSCLAG00000004536) #8	DAP3 (ENSCLAG00000005599) #9	MSTO1 (ENSCLAG00000006273) #10	ENSCLAG00000006556 #11	SYT11 (ENSCLAG00000013172) #12	RIT1 (ENSCLAG00000013305) #13	KHDC4 (ENSCLAG00000010544) #14	ARHGEF2 (ENSCLAG00000013596) #16	SSR2 (ENSCLAG00000003363) #17	UBQLN4 (ENSCLAG00000003519) #18	LAMTOR2 (ENSCLAG00000003700) #19	RAB25 (ENSCLAG00000003784) #20	MEX3A (ENSCLAG00000003842) #21	LMNA (ENSCLAG00000003894) #22	SEMA4A (ENSCLAG00000005297) #23	SLC25A44 (ENSCLAG00000005587) #24	PMF1 (ENSCLAG00000003672) #25	BGLAP (ENSCLAG00000003710) #26	PAQR6 (ENSCLAG00000003899) #27	SMG5 (ENSCLAG00000003983) #28	TMEM79 (ENSCLAG00000004142) #29	GLMP (ENSCLAG00000004192) #30	ENSCLAG00000004359 ##31	RHBG (ENSCLAG00000004625) #32	MEF2D (ENSCLAG00000004702) #33	IQGAP3 (ENSCLAG00000004927) #34	ENSCLAG00000002793 #35	NAXE (ENSCLAG00000002832) #36	ENSCLAG00000002967 #37
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000006300 #7	ENSHGLG00000049863	ASH1L (ENSHGLG00000008090) #8	DAP3 (ENSHGLG00000013978) #9	MSTO1 (ENSHGLG00000018369) #10	ENSHGLG00000006556 #11	SYT11 (ENSHGLG00000032288) #12	ENSHGLG00000034706 #13	KHDC4 (ENSHGLG00000010495) #14	RXFP4 (ENSHGLG00000037004)	SSR2 (ENSHGLG00000035940) #17	UBQLN4 (ENSHGLG00000003684) #18	LAMTOR2 (ENSHGLG00000036352) #19	RAB25 (ENSHGLG00000005517) #20	MEX3A (ENSHGLG00000041429) #21	ENSHGLG00000036594 #22	SEMA4A (ENSHGLG00000003587) #23	SLC25A44 (ENSHGLG00000042222) #24	ENSHGLG00000007944 #26	PAQR6 (ENSHGLG00000015640) #27	SMG5 (ENSHGLG00000019152) #28	TMEM79 (ENSHGLG00000018185) #29	GLMP (ENSHGLG00000041332) #30	ENSHGLG00000003153 ##31	RHBG (ENSHGLG00000005998) #32	MEF2D (ENSHGLG00000019055) #33	IQGAP3 (ENSHGLG00000018362) #34	NAXE (ENSHGLG00000007354) #36	ENSHGLG00000041268	ENSHGLG00000011346 #37	HAPLN2 (ENSHGLG00000003467)