Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000157244 #22
Euteleostomi	ANCESTRAL SPECIES	303				ENSGT00940000159463 #35	ENSGT00570000079224 #32	ENSGT00390000005131 #31	ENSGT00390000002390.b #30	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00940000162345	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000157244 #22
Sarcopterygii	ANCESTRAL SPECIES	49							ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00550000074827	ENSGT00940000157796	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155707	ENSGT00940000160380	ENSGT00950000182989.A	ENSGT00390000006479	ENSGT00940000157327	ENSGT00940000160977	ENSGT00940000172107	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b
Tetrapoda	ANCESTRAL SPECIES	41	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b #15	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Amniota	ANCESTRAL SPECIES	28	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b #15	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Mammalia	ANCESTRAL SPECIES	25	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32
Theria	ANCESTRAL SPECIES	3	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Eutheria	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Glires	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Rodentia	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Rodentia_A	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Sciuridae	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132.e #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Marmotini	ANCESTRAL SPECIES	33	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132.e #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Marmotini_b	ANCESTRAL SPECIES	37	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132.e #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Squirrel	MODERN SPECIES	180	RUSC1 (ENSSTOG00000004516) #7	ASH1L (ENSSTOG00000019952) #8	DAP3 (ENSSTOG00000004627) #9	MSTO1 (ENSSTOG00000004655) #10	ENSSTOG00000004664 #11	SYT11 (ENSSTOG00000004720) #12	RIT1 (ENSSTOG00000021028) #13	KHDC4 (ENSSTOG00000004732) #14	RXFP4 (ENSSTOG00000000616) #15	ARHGEF2 (ENSSTOG00000000620) #16	SSR2 (ENSSTOG00000028971) #17	UBQLN4 (ENSSTOG00000020043) #18	LAMTOR2 (ENSSTOG00000023389) #19	RAB25 (ENSSTOG00000000634) #20	MEX3A (ENSSTOG00000024275) #21	LMNA (ENSSTOG00000001758) #22	SEMA4A (ENSSTOG00000028050) #23	SLC25A44 (ENSSTOG00000001764) #24	PMF1 (ENSSTOG00000001768) #25	ENSSTOG00000034466 #26	BGLAP (ENSSTOG00000027908) #27	PAQR6 (ENSSTOG00000001772) #28	SMG5 (ENSSTOG00000001780) #29	TMEM79 (ENSSTOG00000026140) #30	GLMP (ENSSTOG00000015763) #31	CCT3 (ENSSTOG00000001798) #32	TSACC (ENSSTOG00000001810) #33	RHBG (ENSSTOG00000028396) #34	MEF2D (ENSSTOG00000025590) #35	IQGAP3 (ENSSTOG00000016076) #36	ENSSTOG00000016083 #37
Arctic ground squirrel	MODERN SPECIES	309	RUSC1 (ENSUPAG00010002787) #7	ASH1L (ENSUPAG00010002818) #8	ENSUPAG00010002886 #9	MSTO1 (ENSUPAG00010002943) #10	ENSUPAG00010002975 #11	SYT11 (ENSUPAG00010003045) #12	ENSUPAG00010003055 #13	KHDC4 (ENSUPAG00010003067) #14	ENSUPAG00010003101	ARHGEF2 (ENSUPAG00010003114) #16	SSR2 (ENSUPAG00010003598) #17	UBQLN4 (ENSUPAG00010003613) #18	LAMTOR2 (ENSUPAG00010003634) #19	RAB25 (ENSUPAG00010003640) #20	MEX3A (ENSUPAG00010003653) #21	LMNA (ENSUPAG00010003669) #22	SEMA4A (ENSUPAG00010003712) #23	SLC25A44 (ENSUPAG00010004013) #24	PMF1 (ENSUPAG00010004034) #25	BGLAP (ENSUPAG00010004045) #27	ENSUPAG00010004061 #28	SMG5 (ENSUPAG00010004091) #29	TMEM79 (ENSUPAG00010004129) #30	GLMP (ENSUPAG00010004142) #31	CCT3 (ENSUPAG00010004189) #32	TSACC (ENSUPAG00010004234) #33	RHBG (ENSUPAG00010004243) #34	MEF2D (ENSUPAG00010004263) #35	IQGAP3 (ENSUPAG00010004467) #36	ENSUPAG00010004535 #37	NAXE (ENSUPAG00010004540)
Alpin marmot	MODERN SPECIES	85	ENSMMMG00000014387 #7	ASH1L (ENSMMMG00000014324) #8	DAP3 (ENSMMMG00000014245) #9	MSTO1 (ENSMMMG00000014213) #10	ENSMMMG00000014163 #11	SYT11 (ENSMMMG00000014151) #12	ENSMMMG00000014145 #13	KHDC4 (ENSMMMG00000014104) #14	RXFP4 (ENSMMMG00000014101) #15	ARHGEF2 (ENSMMMG00000013899) #16	SSR2 (ENSMMMG00000013889) #17	UBQLN4 (ENSMMMG00000013874) #18	LAMTOR2 (ENSMMMG00000013864) #19	RAB25 (ENSMMMG00000013857) #20	MEX3A (ENSMMMG00000013855) #21	LMNA (ENSMMMG00000013831) #22	SEMA4A (ENSMMMG00000013785) #23	SLC25A44 (ENSMMMG00000013773) #24	ENSMMMG00000013758	BGLAP (ENSMMMG00000013734) #27	PAQR6 (ENSMMMG00000013724) #28	SMG5 (ENSMMMG00000013706) #29	TMEM79 (ENSMMMG00000013693) #30	GLMP (ENSMMMG00000013644) #31	CCT3 (ENSMMMG00000013571) #32	TSACC (ENSMMMG00000013564) #33	RHBG (ENSMMMG00000013553) #34	ENSMMMG00000013541 #35	IQGAP3 (ENSMMMG00000013468) #36	ENSMMMG00000013455 #37	NAXE (ENSMMMG00000013443)
Eurasian red squirrel	MODERN SPECIES		FDPS (ENSSVLG00005000103)	RUSC1 (ENSSVLG00005000107) #7	ENSSVLG00005000118 #8	MSTO1 (ENSSVLG00005000136) #10	ENSSVLG00005000147 #11	ENSSVLG00005000171 #12	ENSSVLG00005000188 #13	KHDC4 (ENSSVLG00005000224) #14	RXFP4 (ENSSVLG00005000258) #15	ARHGEF2 (ENSSVLG00005000357) #16	SSR2 (ENSSVLG00005000552) #17	UBQLN4 (ENSSVLG00005000591) #18	LAMTOR2 (ENSSVLG00005000628) #19	RAB25 (ENSSVLG00005000653) #20	MEX3A (ENSSVLG00005000673) #21	LMNA (ENSSVLG00005000714) #22	SEMA4A (ENSSVLG00005000802) #23	SLC25A44 (ENSSVLG00005000872) #24	PMF1 (ENSSVLG00005000891) #25	BGLAP (ENSSVLG00005000913) #27	PAQR6 (ENSSVLG00005000936) #28	SMG5 (ENSSVLG00005000972) #29	ENSSVLG00005000998	GLMP (ENSSVLG00005001024) #31	CCT3 (ENSSVLG00005001076) #32	TSACC (ENSSVLG00005001124) #33	RHBG (ENSSVLG00005001146) #34	MEF2D (ENSSVLG00005001227) #35	IQGAP3 (ENSSVLG00005001534) #36	TTC24 (ENSSVLG00005002076) #37	ENSSVLG00005002106
Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.z.a #32	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00960000190501
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000006300 #7	ENSHGLG00000049863	ASH1L (ENSHGLG00000008090) #8	DAP3 (ENSHGLG00000013978) #9	MSTO1 (ENSHGLG00000018369) #10	ENSHGLG00000006556 #11	SYT11 (ENSHGLG00000032288) #12	ENSHGLG00000034706 #13	KHDC4 (ENSHGLG00000010495) #14	RXFP4 (ENSHGLG00000037004) #15	SSR2 (ENSHGLG00000035940) #17	UBQLN4 (ENSHGLG00000003684) #18	LAMTOR2 (ENSHGLG00000036352) #19	RAB25 (ENSHGLG00000005517) #20	MEX3A (ENSHGLG00000041429) #21	ENSHGLG00000036594 #22	SEMA4A (ENSHGLG00000003587) #23	SLC25A44 (ENSHGLG00000042222) #24	ENSHGLG00000007944 #27	PAQR6 (ENSHGLG00000015640) #28	SMG5 (ENSHGLG00000019152) #29	TMEM79 (ENSHGLG00000018185) #30	GLMP (ENSHGLG00000041332) #31	ENSHGLG00000003153 #32	RHBG (ENSHGLG00000005998) #34	MEF2D (ENSHGLG00000019055) #35	IQGAP3 (ENSHGLG00000018362) #36	NAXE (ENSHGLG00000007354)	ENSHGLG00000041268	ENSHGLG00000011346	HAPLN2 (ENSHGLG00000003467)
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.y #32	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.z.a #32	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765
Degu	MODERN SPECIES	73	ASH1L (ENSODEG00000009920) #8	DAP3 (ENSODEG00000010674) #9	MSTO1 (ENSODEG00000011191) #10	ENSODEG00000010737	ENSODEG00000011008 #11	SYT11 (ENSODEG00000010870) #12	RIT1 (ENSODEG00000010128) #13	ENSODEG00000009528 #14	ENSODEG00000019992	ARHGEF2 (ENSODEG00000011373) #16	SSR2 (ENSODEG00000010659) #17	UBQLN4 (ENSODEG00000010901) #18	LAMTOR2 (ENSODEG00000010141) #19	RAB25 (ENSODEG00000009908) #20	MEX3A (ENSODEG00000009643) #21	LMNA (ENSODEG00000009369) #22	SEMA4A (ENSODEG00000009359) #23	SLC25A44 (ENSODEG00000009774) #24	PMF1 (ENSODEG00000011902) #25	BGLAP (ENSODEG00000010926) #27	PAQR6 (ENSODEG00000010747) #28	SMG5 (ENSODEG00000012237) #29	TMEM79 (ENSODEG00000012508) #30	GLMP (ENSODEG00000009800) #31	ENSODEG00000009974 #32	RHBG (ENSODEG00000009136) #34	MEF2D (ENSODEG00000010190) #35	IQGAP3 (ENSODEG00000010076) #36	ENSODEG00000009606 #37	ENSODEG00000010121	ENSODEG00000010437
Long-tailed chinchilla	MODERN SPECIES	252	FDPS (ENSCLAG00000005410)	RUSC1 (ENSCLAG00000005579) #7	ASH1L (ENSCLAG00000004536) #8	DAP3 (ENSCLAG00000005599) #9	MSTO1 (ENSCLAG00000006273) #10	ENSCLAG00000006556 #11	SYT11 (ENSCLAG00000013172) #12	RIT1 (ENSCLAG00000013305) #13	KHDC4 (ENSCLAG00000010544) #14	ARHGEF2 (ENSCLAG00000013596) #16	SSR2 (ENSCLAG00000003363) #17	UBQLN4 (ENSCLAG00000003519) #18	LAMTOR2 (ENSCLAG00000003700) #19	RAB25 (ENSCLAG00000003784) #20	MEX3A (ENSCLAG00000003842) #21	LMNA (ENSCLAG00000003894) #22	SEMA4A (ENSCLAG00000005297) #23	SLC25A44 (ENSCLAG00000005587) #24	PMF1 (ENSCLAG00000003672) #25	BGLAP (ENSCLAG00000003710) #27	PAQR6 (ENSCLAG00000003899) #28	SMG5 (ENSCLAG00000003983) #29	TMEM79 (ENSCLAG00000004142) #30	GLMP (ENSCLAG00000004192) #31	ENSCLAG00000004359 #32	RHBG (ENSCLAG00000004625) #34	MEF2D (ENSCLAG00000004702) #35	IQGAP3 (ENSCLAG00000004927) #36	ENSCLAG00000002793 #37	NAXE (ENSCLAG00000002832)	ENSCLAG00000002967
Guinea pig	MODERN SPECIES	10	RUSC1 (ENSCPOG00000032934) #7	ASH1L (ENSCPOG00000004801) #8	DAP3 (ENSCPOG00000030924) #9	MSTO1 (ENSCPOG00000004857) #10	ENSCPOG00000004859 #11	SYT11 (ENSCPOG00000004866) #12	RIT1 (ENSCPOG00000004868) #13	KHDC4 (ENSCPOG00000004870) #14	ENSCPOG00000032356	ARHGEF2 (ENSCPOG00000025396) #16	SSR2 (ENSCPOG00000023729) #17	UBQLN4 (ENSCPOG00000002467) #18	LAMTOR2 (ENSCPOG00000032238) #19	RAB25 (ENSCPOG00000002472) #20	MEX3A (ENSCPOG00000020219) #21	LMNA (ENSCPOG00000023214) #22	SEMA4A (ENSCPOG00000015694) #23	SLC25A44 (ENSCPOG00000021129) #24	PMF1 (ENSCPOG00000015695) #25	BGLAP (ENSCPOG00000040505) #27	PAQR6 (ENSCPOG00000019726) #28	SMG5 (ENSCPOG00000015696) #29	TMEM79 (ENSCPOG00000033881) #30	GLMP (ENSCPOG00000032634) #31	CCT3 (ENSCPOG00000009131) #32	RHBG (ENSCPOG00000011135) #34	MEF2D (ENSCPOG00000036656) #35	IQGAP3 (ENSCPOG00000005361) #36	ENSCPOG00000012272 #37	NAXE (ENSCPOG00000024878)	ENSCPOG00000013701
Rodentia_B	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Kangaroo rat	MODERN SPECIES	345	ENSDORG00000024404 #7	ENSDORG00000025813 #7	Ash1l (ENSDORG00000025575) #8	Dap3 (ENSDORG00000003596) #9	Msto1 (ENSDORG00000029541) #10	Gon4l (ENSDORG00000003598) #11	Syt11 (ENSDORG00000023709) #12	Rit1 (ENSDORG00000014601) #13	Khdc4 (ENSDORG00000014602) #14	Arhgef2 (ENSDORG00000012162) #16	ENSDORG00000010536 #17	Ubqln4 (ENSDORG00000010538) #18	Lamtor2 (ENSDORG00000002923) #19	Rab25 (ENSDORG00000002922) #20	Mex3a (ENSDORG00000002921) #21	Lmna (ENSDORG00000002470) #22	Sema4a (ENSDORG00000008821) #23
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Muroidea	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.x #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.x #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Chinese hamster chok1gshd	MODERN SPECIES	352	Rusc1 (ENSCGRG00001009459) #7	Ash1l (ENSCGRG00001011192) #8	Dap3 (ENSCGRG00001022521) #9	Msto1 (ENSCGRG00001015681) #10	Gon4l (ENSCGRG00001023253) #11	Syt11 (ENSCGRG00001023824) #12	Rit1 (ENSCGRG00001004542) #13	Khdc4 (ENSCGRG00001012564) #14	Rxfp4 (ENSCGRG00001002374) #15	Arhgef2 (ENSCGRG00001006987) #16	Ssr2 (ENSCGRG00001006822) #17	Ubqln4 (ENSCGRG00001019653) #18	Lamtor2 (ENSCGRG00001008748) #19	Rab25 (ENSCGRG00001017341) #20	Mex3a (ENSCGRG00001000412) #21	Lmna (ENSCGRG00001003129) #22	Sema4a (ENSCGRG00001020918) #23	Slc25a44 (ENSCGRG00001021651) #24	Pmf1 (ENSCGRG00001010918) #25	ENSCGRG00001014532 #27	Paqr6 (ENSCGRG00001016796) #28	Smg5 (ENSCGRG00001006336) #29	Tmem79 (ENSCGRG00001024551) #30	Glmp (ENSCGRG00001007094) #31	Cct3 (ENSCGRG00001015935) #32	Tsacc (ENSCGRG00001019825) #33	Rhbg (ENSCGRG00001000730) #34	Mef2d (ENSCGRG00001013661) #35	Iqgap3 (ENSCGRG00001021083) #36	ENSCGRG00001013450 #37	Naxe (ENSCGRG00001023331)
Golden Hamster	MODERN SPECIES	714	Pklr (ENSMAUG00000012808)	Fdps (ENSMAUG00000020872)	ENSMAUG00000017088 #7	Ash1l (ENSMAUG00000000702) #8	Msto1 (ENSMAUG00000020345) #10	ENSMAUG00000000631 #11	ENSMAUG00000013419 #12	Rit1 (ENSMAUG00000000572) #13	Khdc4 (ENSMAUG00000019676) #14	ENSMAUG00000013645 #16	ENSMAUG00000019940 #16	Ssr2 (ENSMAUG00000021161) #17	Ubqln4 (ENSMAUG00000007686) #18	Lamtor2 (ENSMAUG00000000547) #19	Mex3a (ENSMAUG00000012601) #21	Lmna (ENSMAUG00000012838) #22	ENSMAUG00000017061 #23	Slc25a44 (ENSMAUG00000021047) #24	Pmf1 (ENSMAUG00000019629) #25	ENSMAUG00000015288 #27	Paqr6 (ENSMAUG00000010297) #28	Smg5 (ENSMAUG00000010381) #29	Tmem79 (ENSMAUG00000014791) #30	ENSMAUG00000014449 #32	Tsacc (ENSMAUG00000016723) #33	Rhbg (ENSMAUG00000009341) #34	Mef2d (ENSMAUG00000016452) #35	Iqgap3 (ENSMAUG00000008455) #36	ENSMAUG00000018760 #37	Naxe (ENSMAUG00000018064)	ENSMAUG00000008406
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224.x #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Prairie vole	MODERN SPECIES	8								ENSMOCG00000007816 #14	ENSMOCG00000019234 #16	ENSMOCG00000020991 #16	Ssr2 (ENSMOCG00000001890) #17	ENSMOCG00000013140 #18	Lamtor2 (ENSMOCG00000018988) #19	Rab25 (ENSMOCG00000010953) #20	Mex3a (ENSMOCG00000017881) #21	Lmna (ENSMOCG00000011854) #22	Sema4a (ENSMOCG00000022467) #23	Slc25a44 (ENSMOCG00000014671) #24	ENSMOCG00000018426 #25	ENSMOCG00000019680 #27	Paqr6 (ENSMOCG00000006437) #28	Smg5 (ENSMOCG00000016590) #29	Tmem79 (ENSMOCG00000017414) #30	Glmp (ENSMOCG00000009096) #31	Cct3 (ENSMOCG00000010144) #32	Tsacc (ENSMOCG00000013419) #33	ENSMOCG00000022002	Rhbg (ENSMOCG00000005326) #34	ENSMOCG00000008030	Mef2d (ENSMOCG00000003757) #35	Iqgap3 (ENSMOCG00000020658) #36
Northern American deer mouse	MODERN SPECIES	19	Rusc1 (ENSPEMG00000018232) #7	Ash1l (ENSPEMG00000006789) #8	ENSPEMG00000019185 #9	Msto1 (ENSPEMG00000016178) #10	Gon4l (ENSPEMG00000017252) #11	Syt11 (ENSPEMG00000003809) #12	Rit1 (ENSPEMG00000030433) #13	Khdc4 (ENSPEMG00000007794) #14	Rxfp4 (ENSPEMG00000011662) #15	Arhgef2 (ENSPEMG00000002997) #16	Ssr2 (ENSPEMG00000012464) #17	Ubqln4 (ENSPEMG00000016759) #18	Lamtor2 (ENSPEMG00000009818) #19	Rab25 (ENSPEMG00000007548) #20	Mex3a (ENSPEMG00000019014) #21	Lmna (ENSPEMG00000015821) #22	Sema4a (ENSPEMG00000015516) #23	Slc25a44 (ENSPEMG00000013362) #24	Pmf1 (ENSPEMG00000012625) #25	ENSPEMG00000025586 #27	Paqr6 (ENSPEMG00000002777) #28	Smg5 (ENSPEMG00000001819) #29	Tmem79 (ENSPEMG00000007739) #30	Glmp (ENSPEMG00000013529) #31	Cct3 (ENSPEMG00000015732) #32	Tsacc (ENSPEMG00000014593) #33	Rhbg (ENSPEMG00000011996) #34	Mef2d (ENSPEMG00000019035) #35	Iqgap3 (ENSPEMG00000016406) #36	ENSPEMG00000017615 #37	Naxe (ENSPEMG00000018271)
Murinae	ANCESTRAL SPECIES	5	ENSGT00900000141033.b.b.u #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Mus	ANCESTRAL SPECIES	7	ENSGT00900000141033.b.b.v #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b #34	ENSGT00950000182844.b.b.a.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00900000141033.b.b.v #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.e #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b #34	ENSGT00950000182844.b.b.a.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00900000141033.b.b.v #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.e #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b #34	ENSGT00950000182844.b.b.a.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Mouse	MODERN SPECIES	12	Rusc1 (ENSMUSG00000041263) #7	Ash1l (ENSMUSG00000028053) #8	Dap3 (ENSMUSG00000068921) #9	Msto1 (ENSMUSG00000068922) #10	Gon4l (ENSMUSG00000054199) #11	Syt11 (ENSMUSG00000068923) #12	Rit1 (ENSMUSG00000028057) #13	Khdc4 (ENSMUSG00000028060) #14	Rxfp4 (ENSMUSG00000049741) #15	Arhgef2 (ENSMUSG00000028059) #16	Ssr2 (ENSMUSG00000041355) #17	Ubqln4 (ENSMUSG00000008604) #18	Lamtor2 (ENSMUSG00000028062) #19	Rab25 (ENSMUSG00000008601) #20	Mex3a (ENSMUSG00000074480) #21	Lmna (ENSMUSG00000028063) #22	Sema4a (ENSMUSG00000028064) #23	Slc25a44 (ENSMUSG00000050144) #24	Pmf1 (ENSMUSG00000028066) #25	Bglap (ENSMUSG00000074483) #27	Bglap2 (ENSMUSG00000074486) #27	Bglap3 (ENSMUSG00000074489) #27	Paqr6 (ENSMUSG00000041423) #28	Smg5 (ENSMUSG00000001415) #29	Tmem79 (ENSMUSG00000001420) #30	Glmp (ENSMUSG00000001418) #31	Cct3 (ENSMUSG00000001416) #32	Tsacc (ENSMUSG00000010538) #33	Gm38392 (ENSMUSG00000103766)	Rhbg (ENSMUSG00000104445) #34	Mef2d (ENSMUSG00000001419) #35
Mus_C	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b.v #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.e #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a.b #34	ENSGT00950000182844.b.b.a.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
spretus	MODERN SPECIES	12	MGP_SPRETEiJ_G0026127 #7	Ash1l (MGP_SPRETEiJ_G0026126) #8	Dap3 (MGP_SPRETEiJ_G0026125) #9	Msto1 (MGP_SPRETEiJ_G0026124) #10	Gon4l (MGP_SPRETEiJ_G0026123) #11	Syt11 (MGP_SPRETEiJ_G0026122) #12	Rit1 (MGP_SPRETEiJ_G0026121) #13	Khdc4 (MGP_SPRETEiJ_G0026120) #14	Rxfp4 (MGP_SPRETEiJ_G0026119) #15	Arhgef2 (MGP_SPRETEiJ_G0026118) #16	Ssr2 (MGP_SPRETEiJ_G0026117) #17	Ubqln4 (MGP_SPRETEiJ_G0026116) #18	Lamtor2 (MGP_SPRETEiJ_G0026115) #19	Rab25 (MGP_SPRETEiJ_G0026114) #20	MGP_SPRETEiJ_G0026113 #21	Lmna (MGP_SPRETEiJ_G0026112) #22	Sema4a (MGP_SPRETEiJ_G0026111) #23	Slc25a44 (MGP_SPRETEiJ_G0026110) #24	Pmf1 (MGP_SPRETEiJ_G0026109) #25	MGP_SPRETEiJ_G0026107 #27	MGP_SPRETEiJ_G0026108 #27	MGP_SPRETEiJ_G0026106 #27	Paqr6 (MGP_SPRETEiJ_G0026105) #28	Smg5 (MGP_SPRETEiJ_G0026104) #29	Tmem79 (MGP_SPRETEiJ_G0026103) #30	Glmp (MGP_SPRETEiJ_G0026102) #31	Cct3 (MGP_SPRETEiJ_G0026101) #32	Tsacc (MGP_SPRETEiJ_G0026100) #33	MGP_SPRETEiJ_G0026099 #34	Rhbg (MGP_SPRETEiJ_G0026098) #34	Mef2d (MGP_SPRETEiJ_G0026097) #35
Steppe mouse	MODERN SPECIES	2494						Syt11 (ENSMSIG00000028436) #12	Rit1 (ENSMSIG00000028448) #13	Khdc4 (ENSMSIG00000028451) #14	ENSMSIG00000028469	Arhgef2 (ENSMSIG00000028473) #16	Ssr2 (ENSMSIG00000029173) #17	Ubqln4 (ENSMSIG00000029187) #18	Lamtor2 (ENSMSIG00000029190) #19	Rab25 (ENSMSIG00000029192) #20	ENSMSIG00000029193 #21	Lmna (ENSMSIG00000029196) #22	Sema4a (ENSMSIG00000029207) #23	ENSMSIG00000029223	Slc25a44 (ENSMSIG00000029225) #24	Pmf1 (ENSMSIG00000029235) #25	ENSMSIG00000029238 #27	ENSMSIG00000029245 #28	Smg5 (ENSMSIG00000029250) #29	Tmem79 (ENSMSIG00000029273) #30	Glmp (ENSMSIG00000029280) #31	Cct3 (ENSMSIG00000029307) #32	ENSMSIG00000029349 #33
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0025184 #7	Ash1l (MGP_CAROLIEiJ_G0025183) #8	Dap3 (MGP_CAROLIEiJ_G0025182) #9	Msto1 (MGP_CAROLIEiJ_G0025181) #10	MGP_CAROLIEiJ_G0025180 #11	Syt11 (MGP_CAROLIEiJ_G0025179) #12	Rit1 (MGP_CAROLIEiJ_G0025178) #13	Khdc4 (MGP_CAROLIEiJ_G0025177) #14	Rxfp4 (MGP_CAROLIEiJ_G0025176) #15	Arhgef2 (MGP_CAROLIEiJ_G0025175) #16	Ssr2 (MGP_CAROLIEiJ_G0025174) #17	Ubqln4 (MGP_CAROLIEiJ_G0025173) #18	Lamtor2 (MGP_CAROLIEiJ_G0025172) #19	Rab25 (MGP_CAROLIEiJ_G0025171) #20	Mex3a (MGP_CAROLIEiJ_G0025170) #21	Lmna (MGP_CAROLIEiJ_G0025169) #22	Sema4a (MGP_CAROLIEiJ_G0025168) #23	Slc25a44 (MGP_CAROLIEiJ_G0025167) #24	Pmf1 (MGP_CAROLIEiJ_G0025166) #25	MGP_CAROLIEiJ_G0025165 #27	Paqr6 (MGP_CAROLIEiJ_G0025164) #28	Smg5 (MGP_CAROLIEiJ_G0025163) #29	Tmem79 (MGP_CAROLIEiJ_G0025162) #30	Glmp (MGP_CAROLIEiJ_G0025161) #31	Cct3 (MGP_CAROLIEiJ_G0025160) #32	Tsacc (MGP_CAROLIEiJ_G0025159) #33	MGP_CAROLIEiJ_G0025158 #34	Rhbg (MGP_CAROLIEiJ_G0025157) #34	Mef2d (MGP_CAROLIEiJ_G0025156) #35	Iqgap3 (MGP_CAROLIEiJ_G0025155) #36	MGP_CAROLIEiJ_G0025154 #37
Shrew mouse	MODERN SPECIES	17	Rusc1 (MGP_PahariEiJ_G0026629) #7	MGP_PahariEiJ_G0026628 #7	Ash1l (MGP_PahariEiJ_G0026627) #8	Dap3 (MGP_PahariEiJ_G0026626) #9	MGP_PahariEiJ_G0026625 #10	Gon4l (MGP_PahariEiJ_G0026624) #11	Syt11 (MGP_PahariEiJ_G0026623) #12	Rit1 (MGP_PahariEiJ_G0026622) #13	Khdc4 (MGP_PahariEiJ_G0026621) #14	Arhgef2 (MGP_PahariEiJ_G0026620) #16	Ssr2 (MGP_PahariEiJ_G0026619) #17	Ubqln4 (MGP_PahariEiJ_G0026618) #18	Lamtor2 (MGP_PahariEiJ_G0026617) #19	Rab25 (MGP_PahariEiJ_G0026616) #20	Mex3a (MGP_PahariEiJ_G0026615) #21	Lmna (MGP_PahariEiJ_G0026614) #22	Sema4a (MGP_PahariEiJ_G0026613) #23	Slc25a44 (MGP_PahariEiJ_G0026612) #24	Pmf1 (MGP_PahariEiJ_G0026611) #25	MGP_PahariEiJ_G0026609 #27	MGP_PahariEiJ_G0026610 #27	Paqr6 (MGP_PahariEiJ_G0026607) #28	Smg5 (MGP_PahariEiJ_G0026606) #29	Tmem79 (MGP_PahariEiJ_G0026605) #30	Glmp (MGP_PahariEiJ_G0026604) #31	MGP_PahariEiJ_G0026603 #32	Tsacc (MGP_PahariEiJ_G0026602) #33	MGP_PahariEiJ_G0026601 #34	Rhbg (MGP_PahariEiJ_G0026600) #34	Mef2d (MGP_PahariEiJ_G0026599) #35	Iqgap3 (MGP_PahariEiJ_G0026598) #36
Rat	MODERN SPECIES	11	Pklr (ENSRNOG00000020420)	Fdps (ENSRNOG00000043377) #7	Ash1l (ENSRNOG00000020386) #8	Dap3 (ENSRNOG00000020373) #9	Msto1 (ENSRNOG00000020357) #10	Gon4l (ENSRNOG00000020297) #11	Syt11 (ENSRNOG00000020279) #12	Rit1 (ENSRNOG00000064584) #13	Khdc4 (ENSRNOG00000020139) #14	Arhgef2 (ENSRNOG00000020027) #16	Ssr2 (ENSRNOG00000019940) #17	Ubqln4 (ENSRNOG00000019933) #18	Lamtor2 (ENSRNOG00000019908) #19	Rab25 (ENSRNOG00000023640) #20	Mex3a (ENSRNOG00000058654) #21	Lmna (ENSRNOG00000019638) #22	Sema4a (ENSRNOG00000019737) #23	Slc25a44 (ENSRNOG00000025269) #24	Pmf1 (ENSRNOG00000019620) #25	Bglap (ENSRNOG00000019607) #27	Paqr6 (ENSRNOG00000026059) #28	Smg5 (ENSRNOG00000019590) #29	Tmem79 (ENSRNOG00000019414) #30	Glmp (ENSRNOG00000019281) #31	Cct3 (ENSRNOG00000019090) #32	Tsacc (ENSRNOG00000037552) #33	Rhbg (ENSRNOG00000019412) #34	Mef2d (ENSRNOG00000031778) #35	Iqgap3 (ENSRNOG00000027894) #36	Ttc24 (ENSRNOG00000028765) #37	Naxe (ENSRNOG00000019201)
Upper Galilee mountains blind mole rat	MODERN SPECIES	497	Rusc1 (ENSNGAG00000008260) #7	Ash1l (ENSNGAG00000021986) #8	Dap3 (ENSNGAG00000014173) #9	Msto1 (ENSNGAG00000022769) #10	Gon4l (ENSNGAG00000020844) #11	Syt11 (ENSNGAG00000013529) #12	Rit1 (ENSNGAG00000013104) #13	Khdc4 (ENSNGAG00000012421) #14	ENSNGAG00000011350 #16	ENSNGAG00000009107 #16	Ssr2 (ENSNGAG00000002859) #17	Ubqln4 (ENSNGAG00000020831) #18	Lamtor2 (ENSNGAG00000020249) #19	Rab25 (ENSNGAG00000019999) #20	Mex3a (ENSNGAG00000019587) #21	Lmna (ENSNGAG00000017368) #22	Sema4a (ENSNGAG00000012750) #23	Slc25a44 (ENSNGAG00000010575) #24	Pmf1 (ENSNGAG00000007750) #25	ENSNGAG00000001625 #27	Paqr6 (ENSNGAG00000000673) #28	Smg5 (ENSNGAG00000020706) #29	Tmem79 (ENSNGAG00000020294) #30	Glmp (ENSNGAG00000019347) #31	Cct3 (ENSNGAG00000016875) #32	Rhbg (ENSNGAG00000019322) #34	Mef2d (ENSNGAG00000016036) #35	Iqgap3 (ENSNGAG00000020879) #36	Naxe (ENSNGAG00000020268)	ENSNGAG00000019958	Hapln2 (ENSNGAG00000019736)
Lesser Egyptian jerboa	MODERN SPECIES	141	Ash1l (ENSJJAG00000017942) #8	Dap3 (ENSJJAG00000010235) #9	Msto1 (ENSJJAG00000019140) #10	ENSJJAG00000013614 #11	ENSJJAG00000010636 #12	Rit1 (ENSJJAG00000023411) #13	ENSJJAG00000020627 #14	Rxfp4 (ENSJJAG00000013686) #15	ENSJJAG00000017646 #16	ENSJJAG00000016067 #16	Ssr2 (ENSJJAG00000024209) #17	Ubqln4 (ENSJJAG00000002118) #18	ENSJJAG00000021135 #19	Rab25 (ENSJJAG00000021013) #20	Mex3a (ENSJJAG00000020484) #21	Lmna (ENSJJAG00000019904) #22	Sema4a (ENSJJAG00000016229) #23	Slc25a44 (ENSJJAG00000001462) #24	Pmf1 (ENSJJAG00000013470) #25	ENSJJAG00000000652 #27	Paqr6 (ENSJJAG00000001367) #28	Smg5 (ENSJJAG00000022763) #29	Tmem79 (ENSJJAG00000023610) #30	ENSJJAG00000019201	Cct3 (ENSJJAG00000013939) #32	ENSJJAG00000017067	Mef2d (ENSJJAG00000011790) #35	Iqgap3 (ENSJJAG00000000649) #36	ENSJJAG00000021021 #37	Naxe (ENSJJAG00000023933)	Hapln2 (ENSJJAG00000016470)
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01090000260051.b.b	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Pika	MODERN SPECIES	3341										ARHGEF2 (ENSOPRG00000002782) #16	SSR2 (ENSOPRG00000002830) #17	UBQLN4 (ENSOPRG00000002851) #18	LAMTOR2 (ENSOPRG00000002877) #19	RAB25 (ENSOPRG00000002894) #20	MEX3A (ENSOPRG00000002937) #21	LMNA (ENSOPRG00000002966) #22	SEMA4A (ENSOPRG00000002992) #23	SLC25A44 (ENSOPRG00000003022) #24
Rabbit	MODERN SPECIES	4	ENSOCUG00000034353	DAP3 (ENSOCUG00000004785) #9	MSTO1 (ENSOCUG00000010186) #10	ENSOCUG00000010191 #11	ENSOCUG00000026145 #11	SYT11 (ENSOCUG00000027971) #12	RIT1 (ENSOCUG00000006377) #13	KHDC4 (ENSOCUG00000010430) #14	ENSOCUG00000026819	ARHGEF2 (ENSOCUG00000001937) #16	SSR2 (ENSOCUG00000008455) #17	UBQLN4 (ENSOCUG00000007156) #18	LAMTOR2 (ENSOCUG00000027994) #19	RAB25 (ENSOCUG00000005634) #20	ENSOCUG00000005640 #21	LMNA (ENSOCUG00000010011) #22	SEMA4A (ENSOCUG00000001326) #23	SLC25A44 (ENSOCUG00000012861) #24	PMF1 (ENSOCUG00000012870) #25	BGLAP (ENSOCUG00000025958) #27	SMG5 (ENSOCUG00000012886) #29	ENSOCUG00000012899 #30	GLMP (ENSOCUG00000026609) #31	CCT3 (ENSOCUG00000000137) #32	TSACC (ENSOCUG00000029754) #33	RHBG (ENSOCUG00000016130) #34	MEF2D (ENSOCUG00000012173) #35	TTC24 (ENSOCUG00000023015) #37	IQGAP3 (ENSOCUG00000012177) #36	NAXE (ENSOCUG00000016208)	GPATCH4 (ENSOCUG00000025781)
Tree shrew	MODERN SPECIES	3906										RXFP4 (ENSTBEG00000001002) #15	ARHGEF2 (ENSTBEG00000001641) #16	SSR2 (ENSTBEG00000002867) #17	UBQLN4 (ENSTBEG00000003066) #18	LAMTOR2 (ENSTBEG00000003768) #19	RAB25 (ENSTBEG00000004142) #20	LMNA (ENSTBEG00000005069) #22
Primates	ANCESTRAL SPECIES	7	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00940000156698 #8	ENSGT00390000016256.l #11	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000156698 #8	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000156698 #8	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000156698 #8	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067.c.b #10	ENSGT00530000064067.c.a #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00530000064067.d #10	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067.c.a #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Pan	ANCESTRAL SPECIES		ENSGT00940000156698 #8	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067.c.a #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Chimpanzee	MODERN SPECIES		CLDN6 (ENSPTRG00000045058)	YY1AP1 (ENSPTRG00000001429) #11	DAP3 (ENSPTRG00000001430) #9	MSTO1 (ENSPTRG00000001428) #10	GON4L (ENSPTRG00000001433) #11	SYT11 (ENSPTRG00000001436) #12	RIT1 (ENSPTRG00000001437) #13	KHDC4 (ENSPTRG00000001438) #14	RXFP4 (ENSPTRG00000001439) #15	ARHGEF2 (ENSPTRG00000001441) #16	SSR2 (ENSPTRG00000001442) #17	UBQLN4 (ENSPTRG00000001444) #18	LAMTOR2 (ENSPTRG00000001445) #19	RAB25 (ENSPTRG00000001446) #20	MEX3A (ENSPTRG00000030373) #21	LMNA (ENSPTRG00000001447) #22	SEMA4A (ENSPTRG00000001448) #23	SLC25A44 (ENSPTRG00000001449) #24	PMF1 (ENSPTRG00000001450) #25	BGLAP (ENSPTRG00000041553) #27	PAQR6 (ENSPTRG00000001451) #28	SMG5 (ENSPTRG00000023925) #29	TMEM79 (ENSPTRG00000001453) #30	GLMP (ENSPTRG00000001455) #31	CCT3 (ENSPTRG00000001456) #32	TSACC (ENSPTRG00000001457)	RHBG (ENSPTRG00000001458) #34	ENSPTRG00000001459	MEF2D (ENSPTRG00000001460) #35	IQGAP3 (ENSPTRG00000001461) #36	TTC24 (ENSPTRG00000001462) #37
Bonobo	MODERN SPECIES		YY1AP1 (ENSPPAG00000041804) #11	DAP3 (ENSPPAG00000030901) #9	ENSPPAG00000035270	ENSPPAG00000028555 #10	GON4L (ENSPPAG00000030169) #11	SYT11 (ENSPPAG00000039359) #12	RIT1 (ENSPPAG00000043026) #13	KHDC4 (ENSPPAG00000028145) #14	RXFP4 (ENSPPAG00000011483) #15	ARHGEF2 (ENSPPAG00000043187) #16	ENSPPAG00000036187 #17	UBQLN4 (ENSPPAG00000040262) #18	LAMTOR2 (ENSPPAG00000037502) #19	RAB25 (ENSPPAG00000031127) #20	MEX3A (ENSPPAG00000016303) #21	LMNA (ENSPPAG00000037857) #22	SEMA4A (ENSPPAG00000043828) #23	SLC25A44 (ENSPPAG00000027895) #24	ENSPPAG00000034289	BGLAP (ENSPPAG00000042608) #27	ENSPPAG00000027236 #28	SMG5 (ENSPPAG00000011996) #29	TMEM79 (ENSPPAG00000042037) #30	GLMP (ENSPPAG00000028749) #31	CCT3 (ENSPPAG00000042161) #32	TSACC (ENSPPAG00000040738) #33	RHBG (ENSPPAG00000032922) #34	ENSPPAG00000028566	MEF2D (ENSPPAG00000038584) #35	IQGAP3 (ENSPPAG00000040557) #36	TTC24 (ENSPPAG00000031347) #37
Human	MODERN SPECIES		ASH1L (ENSG00000116539) #8	MSTO1 (ENSG00000125459) #10	YY1AP1 (ENSG00000163374) #11	DAP3 (ENSG00000132676) #9	GON4L (ENSG00000116580) #11	SYT11 (ENSG00000132718) #12	RIT1 (ENSG00000143622) #13	KHDC4 (ENSG00000132680) #14	RXFP4 (ENSG00000173080) #15	ARHGEF2 (ENSG00000116584) #16	SSR2 (ENSG00000163479) #17	UBQLN4 (ENSG00000160803) #18	LAMTOR2 (ENSG00000116586) #19	RAB25 (ENSG00000132698) #20	MEX3A (ENSG00000254726) #21	LMNA (ENSG00000160789) #22	SEMA4A (ENSG00000196189) #23	SLC25A44 (ENSG00000160785) #24	PMF1-BGLAP (ENSG00000260238)	PMF1 (ENSG00000160783) #25	BGLAP (ENSG00000242252) #27	PAQR6 (ENSG00000160781) #28	SMG5 (ENSG00000198952) #29	TMEM79 (ENSG00000163472) #30	GLMP (ENSG00000198715) #31	VHLL (ENSG00000189030)	CCT3 (ENSG00000163468) #32	TSACC (ENSG00000163467) #33	RHBG (ENSG00000132677) #34	MEF2D (ENSG00000116604) #35	IQGAP3 (ENSG00000183856) #36
Gorilla	MODERN SPECIES		YY1AP1 (ENSGGOG00000026024) #11	DAP3 (ENSGGOG00000007618) #9	ENSGGOG00000040593 #10	GON4L (ENSGGOG00000000477) #11	ENSGGOG00000025183 #11	SYT11 (ENSGGOG00000010111) #12	RIT1 (ENSGGOG00000001461) #13	KHDC4 (ENSGGOG00000024568) #14	RXFP4 (ENSGGOG00000034869) #15	ARHGEF2 (ENSGGOG00000005907) #16	SSR2 (ENSGGOG00000024769) #17	ENSGGOG00000008916 #18	LAMTOR2 (ENSGGOG00000006818) #19	RAB25 (ENSGGOG00000006821) #20	MEX3A (ENSGGOG00000004513) #21	LMNA (ENSGGOG00000000813) #22	SEMA4A (ENSGGOG00000000814) #23	SLC25A44 (ENSGGOG00000010910) #24	PMF1 (ENSGGOG00000037793) #25	BGLAP (ENSGGOG00000010916) #27	ENSGGOG00000010923 #28	SMG5 (ENSGGOG00000010932) #29	TMEM79 (ENSGGOG00000014240) #30	GLMP (ENSGGOG00000014243) #31	CCT3 (ENSGGOG00000023333) #32	TSACC (ENSGGOG00000008582) #33	RHBG (ENSGGOG00000007638) #34	ENSGGOG00000034972	MEF2D (ENSGGOG00000008534) #35	IQGAP3 (ENSGGOG00000002548) #36	TTC24 (ENSGGOG00000012558) #37
Orangutan	MODERN SPECIES		YY1AP1 (ENSPPYG00000000743) #11	DAP3 (ENSPPYG00000000742) #9	MSTO1 (ENSPPYG00000000740) #10	MSTO2P (ENSPPYG00000010648)	GON4L (ENSPPYG00000000739) #11	SYT11 (ENSPPYG00000039531) #12	RIT1 (ENSPPYG00000000737) #13	KHDC4 (ENSPPYG00000000736) #14	RXFP4 (ENSPPYG00000000735) #15	ARHGEF2 (ENSPPYG00000000734) #16	SSR2 (ENSPPYG00000000733) #17	UBQLN4 (ENSPPYG00000000732) #18	LAMTOR2 (ENSPPYG00000000731) #19	RAB25 (ENSPPYG00000000730) #20	MEX3A (ENSPPYG00000000729) #21	LMNA (ENSPPYG00000000728) #22	SEMA4A (ENSPPYG00000000727) #23	SLC25A44 (ENSPPYG00000000726) #24	ENSPPYG00000000725	PAQR6 (ENSPPYG00000000724) #28	SMG5 (ENSPPYG00000000723) #29	TMEM79 (ENSPPYG00000000722) #30	GLMP (ENSPPYG00000000721) #31	CCT3 (ENSPPYG00000010639) #32	ENSPPYG00000031428 #33	RHBG (ENSPPYG00000000718) #34	ENSPPYG00000000717	MEF2D (ENSPPYG00000000716) #35	IQGAP3 (ENSPPYG00000000715) #36	TTC24 (ENSPPYG00000000714) #37	NAXE (ENSPPYG00000000713)
Gibbon	MODERN SPECIES	2	ASH1L (ENSNLEG00000012163) #8	ENSNLEG00000012222 #10	YY1AP1 (ENSNLEG00000012206) #11	DAP3 (ENSNLEG00000012211) #9	ENSNLEG00000031265 #10	GON4L (ENSNLEG00000035449) #11	SYT11 (ENSNLEG00000012224) #12	RIT1 (ENSNLEG00000012228) #13	KHDC4 (ENSNLEG00000012238) #14	ENSNLEG00000012262	ARHGEF2 (ENSNLEG00000012264) #16	SSR2 (ENSNLEG00000032588) #17	LAMTOR2 (ENSNLEG00000035591) #19	RAB25 (ENSNLEG00000012323) #20	MEX3A (ENSNLEG00000012329) #21	LMNA (ENSNLEG00000012331) #22	SEMA4A (ENSNLEG00000012367) #23	ENSNLEG00000012408 #24	ENSNLEG00000033074 #25	BGLAP (ENSNLEG00000012409) #27	ENSNLEG00000012423 #28	SMG5 (ENSNLEG00000012439) #29	TMEM79 (ENSNLEG00000012481) #30	GLMP (ENSNLEG00000032477) #31	CCT3 (ENSNLEG00000012509) #32	TSACC (ENSNLEG00000012582) #33	RHBG (ENSNLEG00000012589) #34	ENSNLEG00000012606	ENSNLEG00000028307 #35	ENSNLEG00000012625 #36	TTC24 (ENSNLEG00000012653) #37
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00940000156698 #8	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000156698 #8	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00530000064067.h #10	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067.g.a #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35
Macaca	ANCESTRAL SPECIES		ENSGT00390000016256.l.a.a #11	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067.g.a #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00990000210932	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Pig-tailed macaque	MODERN SPECIES	262	ASH1L (ENSMNEG00000004882) #8	MSTO1 (ENSMNEG00000030351) #10	YY1AP1 (ENSMNEG00000038421) #11	DAP3 (ENSMNEG00000043408) #9	GON4L (ENSMNEG00000022837) #11	SYT11 (ENSMNEG00000039442) #12	RIT1 (ENSMNEG00000039545) #13	KHDC4 (ENSMNEG00000005131) #14	RXFP4 (ENSMNEG00000025991) #15	ARHGEF2 (ENSMNEG00000030024) #16	ENSMNEG00000036868 #17	UBQLN4 (ENSMNEG00000028661) #18	LAMTOR2 (ENSMNEG00000044990) #19	RAB25 (ENSMNEG00000004251) #20	MEX3A (ENSMNEG00000031569) #21	LMNA (ENSMNEG00000045506) #22	SEMA4A (ENSMNEG00000027619) #23	ENSMNEG00000041520	SLC25A44 (ENSMNEG00000032439) #24	PMF1 (ENSMNEG00000030198) #25	BGLAP (ENSMNEG00000014728) #27	ENSMNEG00000037204 #28	SMG5 (ENSMNEG00000044425) #29	TMEM79 (ENSMNEG00000040540) #30	GLMP (ENSMNEG00000034996) #31	CCT3 (ENSMNEG00000027103) #32	TSACC (ENSMNEG00000030389) #33	RHBG (ENSMNEG00000032887) #34	ENSMNEG00000043633	MEF2D (ENSMNEG00000029442) #35	IQGAP3 (ENSMNEG00000043986) #36
Macaca_a	ANCESTRAL SPECIES		ENSGT00390000016256.l.a.a #11	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067.g.b #10	ENSGT00530000064067.g.a #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000005131 #31	ENSGT00390000002390.b #30	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00990000210932	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Rhesus	MODERN SPECIES		ENSMMUG00000009981 #10	ASH1L (ENSMMUG00000023146) #8	DAP3 (ENSMMUG00000018080) #9	ENSMMUG00000062397 #10	GON4L (ENSMMUG00000009987) #11	SYT11 (ENSMMUG00000021312) #12	RIT1 (ENSMMUG00000053454) #13	KHDC4 (ENSMMUG00000004648) #14	RXFP4 (ENSMMUG00000005090)	ARHGEF2 (ENSMMUG00000005092) #16	SSR2 (ENSMMUG00000013495) #17	UBQLN4 (ENSMMUG00000009983) #18	LAMTOR2 (ENSMMUG00000012126) #19	RAB25 (ENSMMUG00000022306) #20	MEX3A (ENSMMUG00000052160) #21	LMNA (ENSMMUG00000016096) #22	ENSMMUG00000037731	SEMA4A (ENSMMUG00000004901) #23	BGLAP (ENSMMUG00000004902) #24	PAQR6 (ENSMMUG00000000085) #28	SMG5 (ENSMMUG00000000090) #29	TMEM79 (ENSMMUG00000047929) #30	GLMP (ENSMMUG00000000092) #31	VHLL (ENSMMUG00000064443)	CCT3 (ENSMMUG00000019034) #32	TSACC (ENSMMUG00000051030) #33	RHBG (ENSMMUG00000017965) #34	ENSMMUG00000017966	ENSMMUG00000057120	MEF2D (ENSMMUG00000016696) #35	IQGAP3 (ENSMMUG00000002621) #36
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000050889 #11	ENSMFAG00000044446 #11	ENSMFAG00000056171	DAP3 (ENSMFAG00000031112) #9	MSTO1 (ENSMFAG00000031664) #10	GON4L (ENSMFAG00000035960) #11	SYT11 (ENSMFAG00000039413) #12	RIT1 (ENSMFAG00000054543) #13	KHDC4 (ENSMFAG00000003201) #14	ENSMFAG00000029955	ARHGEF2 (ENSMFAG00000034906) #16	SSR2 (ENSMFAG00000040060) #17	LAMTOR2 (ENSMFAG00000018166) #19	RAB25 (ENSMFAG00000000115) #20	MEX3A (ENSMFAG00000000628) #21	LMNA (ENSMFAG00000045463) #22	ENSMFAG00000054546	SEMA4A (ENSMFAG00000037487) #23	SLC25A44 (ENSMFAG00000003800) #24	PMF1 (ENSMFAG00000031299) #25	BGLAP (ENSMFAG00000056045) #27	ENSMFAG00000043399 #28	TMEM79 (ENSMFAG00000002046) #30	SMG5 (ENSMFAG00000045357) #29	CCT3 (ENSMFAG00000033146) #32	TSACC (ENSMFAG00000036557) #33	RHBG (ENSMFAG00000040010) #34	ENSMFAG00000005400	MEF2D (ENSMFAG00000030808) #35	IQGAP3 (ENSMFAG00000035349) #36	TTC24 (ENSMFAG00000036161) #37
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00530000064067.h #10	ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067.g.a #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35
Olive baboon	MODERN SPECIES		ASH1L (ENSPANG00000004959) #8	MSTO1 (ENSPANG00000006654) #10	YY1AP1 (ENSPANG00000029721) #11	DAP3 (ENSPANG00000001758) #9	GON4L (ENSPANG00000011456) #11	SYT11 (ENSPANG00000018152) #12	RIT1 (ENSPANG00000035332) #13	KHDC4 (ENSPANG00000011455) #14	ENSPANG00000004167	ARHGEF2 (ENSPANG00000006851) #16	SSR2 (ENSPANG00000005571) #17	UBQLN4 (ENSPANG00000001757) #18	LAMTOR2 (ENSPANG00000032414) #19	RAB25 (ENSPANG00000003113) #20	MEX3A (ENSPANG00000020303) #21	LMNA (ENSPANG00000003882) #22	SEMA4A (ENSPANG00000016075) #23	ENSPANG00000041668	SLC25A44 (ENSPANG00000008735) #24	PMF1 (ENSPANG00000010692) #25	BGLAP (ENSPANG00000023523) #27	PAQR6 (ENSPANG00000008734) #28	SMG5 (ENSPANG00000011201) #29	TMEM79 (ENSPANG00000011454) #30	GLMP (ENSPANG00000018021) #31	ENSPANG00000003881	CCT3 (ENSPANG00000026114) #32	TSACC (ENSPANG00000019713) #33	RHBG (ENSPANG00000015205) #34	ENSPANG00000024517	MEF2D (ENSPANG00000014079) #35
Cercopithecinae_d	ANCESTRAL SPECIES	33		ENSGT00390000016256.l.b #11	ENSGT00390000015248 #9	ENSGT00530000064067.g.a #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00990000210932	ENSGT00940000159463 #35
Drill	MODERN SPECIES	1097					GON4L (ENSMLEG00000039636) #11	SYT11 (ENSMLEG00000034240) #12	RIT1 (ENSMLEG00000030499) #13	KHDC4 (ENSMLEG00000036924) #14	RXFP4 (ENSMLEG00000000539) #15	ARHGEF2 (ENSMLEG00000038613) #16	SSR2 (ENSMLEG00000038454) #17	UBQLN4 (ENSMLEG00000036998) #18	LAMTOR2 (ENSMLEG00000020600) #19	RAB25 (ENSMLEG00000025037) #20	MEX3A (ENSMLEG00000023495) #21	LMNA (ENSMLEG00000030821) #22	SEMA4A (ENSMLEG00000033397) #23	ENSMLEG00000037790	SLC25A44 (ENSMLEG00000019841) #24	PMF1 (ENSMLEG00000032681) #25	BGLAP (ENSMLEG00000039620) #27	PAQR6 (ENSMLEG00000038853) #28	SMG5 (ENSMLEG00000041192) #29	TMEM79 (ENSMLEG00000038027) #30	GLMP (ENSMLEG00000038171) #31	ENSMLEG00000043471	CCT3 (ENSMLEG00000036583) #32	TSACC (ENSMLEG00000015946) #33	RHBG (ENSMLEG00000039112) #34	ENSMLEG00000042439	MEF2D (ENSMLEG00000043192) #35
Sooty mangabey	MODERN SPECIES	226		YY1AP1 (ENSCATG00000042138) #11	DAP3 (ENSCATG00000037832) #9	MSTO1 (ENSCATG00000041352) #10	GON4L (ENSCATG00000031497) #11	SYT11 (ENSCATG00000038729) #12	RIT1 (ENSCATG00000045033) #13	KHDC4 (ENSCATG00000034662) #14	RXFP4 (ENSCATG00000019172) #15	ARHGEF2 (ENSCATG00000029542) #16	SSR2 (ENSCATG00000030169) #17	UBQLN4 (ENSCATG00000023959) #18	LAMTOR2 (ENSCATG00000030341) #19	RAB25 (ENSCATG00000029662) #20	MEX3A (ENSCATG00000032390) #21	LMNA (ENSCATG00000033574) #22	SEMA4A (ENSCATG00000036260) #23	ENSCATG00000042076	SLC25A44 (ENSCATG00000039803) #24	PMF1 (ENSCATG00000029246) #25	BGLAP (ENSCATG00000014375) #27	PAQR6 (ENSCATG00000029286) #28	SMG5 (ENSCATG00000030539) #29	TMEM79 (ENSCATG00000041384) #30	GLMP (ENSCATG00000032524) #31	CCT3 (ENSCATG00000032970) #32	TSACC (ENSCATG00000032103) #33	RHBG (ENSCATG00000028238) #34	ENSCATG00000040742	MEF2D (ENSCATG00000043926) #35	IQGAP3 (ENSCATG00000007614) #36
Vervet Monkey	MODERN SPECIES	12	ASH1L (ENSCSAG00000002027) #8	YY1AP1 (ENSCSAG00000002031) #11	DAP3 (ENSCSAG00000002035) #9	ENSCSAG00000002038 #10	GON4L (ENSCSAG00000002060) #11	SYT11 (ENSCSAG00000002072) #12	RIT1 (ENSCSAG00000002074) #13	KHDC4 (ENSCSAG00000002082) #14	ENSCSAG00000000059	ARHGEF2 (ENSCSAG00000002088) #16	SSR2 (ENSCSAG00000002090) #17	UBQLN4 (ENSCSAG00000002093) #18	LAMTOR2 (ENSCSAG00000002094) #19	RAB25 (ENSCSAG00000002096) #20	MEX3A (ENSCSAG00000002097) #21	LMNA (ENSCSAG00000002099) #22	SEMA4A (ENSCSAG00000002102) #23	SLC25A44 (ENSCSAG00000002104) #24	PMF1 (ENSCSAG00000002107) #25	BGLAP (ENSCSAG00000002112) #27	PAQR6 (ENSCSAG00000002117) #28	SMG5 (ENSCSAG00000002120) #29	TMEM79 (ENSCSAG00000002125) #30	GLMP (ENSCSAG00000002123) #31	CCT3 (ENSCSAG00000002128) #32	TSACC (ENSCSAG00000002131) #33	RHBG (ENSCSAG00000002135) #34	MEF2D (ENSCSAG00000002143) #35	IQGAP3 (ENSCSAG00000002151) #36	TTC24 (ENSCSAG00000002156) #37	NAXE (ENSCSAG00000002158)
Rhinopithecus	ANCESTRAL SPECIES	59		ENSGT00390000016256.l.a.a #11	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b.c #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35
Golden snub-nosed monkey	MODERN SPECIES	1290												ENSRROG00000027233 #18	LAMTOR2 (ENSRROG00000045270) #19	RAB25 (ENSRROG00000028851) #20	MEX3A (ENSRROG00000029193) #21	LMNA (ENSRROG00000037915) #22	SEMA4A (ENSRROG00000043198) #23	ENSRROG00000044575	SLC25A44 (ENSRROG00000030201) #24	ENSRROG00000038103	PAQR6 (ENSRROG00000042038) #28	SMG5 (ENSRROG00000030035) #29	ENSRROG00000041912 #30
Black snub-nosed monkey	MODERN SPECIES	1571						DCDC2C (ENSRBIG00000042681)	ALLC (ENSRBIG00000032207)	KHDC4 (ENSRBIG00000013231) #14	RXFP4 (ENSRBIG00000032808) #15	ARHGEF2 (ENSRBIG00000035589) #16	SSR2 (ENSRBIG00000039430) #17	UBQLN4 (ENSRBIG00000033879) #18	LAMTOR2 (ENSRBIG00000043324) #19	RAB25 (ENSRBIG00000044154) #20	MEX3A (ENSRBIG00000033197) #21	LMNA (ENSRBIG00000041859) #22	SEMA4A (ENSRBIG00000037159) #23	ENSRBIG00000026928	SLC25A44 (ENSRBIG00000041041) #24	ENSRBIG00000036011	BGLAP (ENSRBIG00000000752) #27	ENSRBIG00000027798 #28	SMG5 (ENSRBIG00000027428) #29	ENSRBIG00000032628 #30	GLMP (ENSRBIG00000030275) #31	CCT3 (ENSRBIG00000032821) #32	TSACC (ENSRBIG00000036225) #33	RHBG (ENSRBIG00000029171) #34	ENSRBIG00000033686	MEF2D (ENSRBIG00000038018) #35	IQGAP3 (ENSRBIG00000036001) #36
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00940000156698 #8	ENSGT00390000016256.l #11	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Cebidae	ANCESTRAL SPECIES	12	ENSGT00940000156698 #8	ENSGT00390000016256.l #11	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00940000156698 #8	ENSGT00390000016256.l #11	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.k #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT01010000224083	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00390000005493	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36
Capuchin	MODERN SPECIES	427		YY1AP1 (ENSCCAG00000026983) #11	DAP3 (ENSCCAG00000033532) #9	MSTO1 (ENSCCAG00000035498) #10	GON4L (ENSCCAG00000037108) #11	SYT11 (ENSCCAG00000016634) #12	RIT1 (ENSCCAG00000037656) #13	KHDC4 (ENSCCAG00000023017) #14	ARHGEF2 (ENSCCAG00000029636) #16	SSR2 (ENSCCAG00000037436) #17	ENSCCAG00000029510	UBQLN4 (ENSCCAG00000036689) #18	LAMTOR2 (ENSCCAG00000026308) #19	RAB25 (ENSCCAG00000021873) #20	MEX3A (ENSCCAG00000022351) #21	LMNA (ENSCCAG00000023432) #22	SEMA4A (ENSCCAG00000032806) #23	SLC25A44 (ENSCCAG00000026588) #24	PMF1 (ENSCCAG00000025850) #25	BGLAP (ENSCCAG00000020525) #27	PAQR6 (ENSCCAG00000027826) #28	SMG5 (ENSCCAG00000027409) #29	TMEM79 (ENSCCAG00000028389) #30	GLMP (ENSCCAG00000034620) #31	ENSCCAG00000011652	CCT3 (ENSCCAG00000033998) #32	TSACC (ENSCCAG00000022149) #33	RHBG (ENSCCAG00000029159) #34	ENSCCAG00000027166	MEF2D (ENSCCAG00000034560) #35	IQGAP3 (ENSCCAG00000025509) #36
Bolivian squirrel monkey	MODERN SPECIES	136	ASH1L (ENSSBOG00000026764) #8	YY1AP1 (ENSSBOG00000029484) #11	DAP3 (ENSSBOG00000033972) #9	MSTO1 (ENSSBOG00000023864) #10	GON4L (ENSSBOG00000032520) #11	SYT11 (ENSSBOG00000035584) #12	RIT1 (ENSSBOG00000023350) #13	KHDC4 (ENSSBOG00000034469) #14	RXFP4 (ENSSBOG00000034710) #15	ARHGEF2 (ENSSBOG00000034006) #16	SSR2 (ENSSBOG00000020706) #17	UBQLN4 (ENSSBOG00000021728) #18	LAMTOR2 (ENSSBOG00000035732) #19	RAB25 (ENSSBOG00000032212) #20	MEX3A (ENSSBOG00000025317) #21	LMNA (ENSSBOG00000014857) #22	SEMA4A (ENSSBOG00000019443) #23	SLC25A44 (ENSSBOG00000020325) #24	PMF1 (ENSSBOG00000034025) #25	BGLAP (ENSSBOG00000026047) #27	PAQR6 (ENSSBOG00000036021) #28	SMG5 (ENSSBOG00000033339) #29	TMEM79 (ENSSBOG00000021483) #30	GLMP (ENSSBOG00000020411) #31	CCT3 (ENSSBOG00000035044) #32	TSACC (ENSSBOG00000020015) #33	RHBG (ENSSBOG00000035568) #34	ENSSBOG00000035567	MEF2D (ENSSBOG00000033445) #35	IQGAP3 (ENSSBOG00000021499) #36	TTC24 (ENSSBOG00000027761) #37
Marmoset	MODERN SPECIES	9	YY1AP1 (ENSCJAG00000042285) #11	DAP3 (ENSCJAG00000008125) #9	ENSCJAG00000063148 #10	GON4L (ENSCJAG00000007977) #11	SYT11 (ENSCJAG00000043885) #12	ENSCJAG00000032919	RIT1 (ENSCJAG00000061243) #13	KHDC4 (ENSCJAG00000007881) #14	ENSCJAG00000007878	ARHGEF2 (ENSCJAG00000007846) #16	SSR2 (ENSCJAG00000046590) #17	UBQLN4 (ENSCJAG00000007755) #18	LAMTOR2 (ENSCJAG00000007739) #19	RAB25 (ENSCJAG00000007715) #20	MEX3A (ENSCJAG00000007711) #21	LMNA (ENSCJAG00000005413) #22	SEMA4A (ENSCJAG00000005605) #23	SLC25A44 (ENSCJAG00000005625) #24	ENSCJAG00000005636	BGLAP (ENSCJAG00000046802) #27	PAQR6 (ENSCJAG00000005656) #28	SMG5 (ENSCJAG00000005684) #29	TMEM79 (ENSCJAG00000005765) #30	GLMP (ENSCJAG00000005757) #31	ENSCJAG00000005776 #32	TSACC (ENSCJAG00000005831) #33	RHBG (ENSCJAG00000005838) #34	MEF2D (ENSCJAG00000005848) #35	IQGAP3 (ENSCJAG00000005862) #36	ENSCJAG00000006002 #37	NAXE (ENSCJAG00000006018)
Mas night monkey	MODERN SPECIES	1180	YY1AP1 (ENSANAG00000022356) #11	DAP3 (ENSANAG00000033995) #9	ENSANAG00000035773 #10	ENSANAG00000026598	GON4L (ENSANAG00000036572) #11	ENSANAG00000006710	SYT11 (ENSANAG00000020380) #12	RIT1 (ENSANAG00000033671) #13	ENSANAG00000034289 #14	ARHGEF2 (ENSANAG00000038394) #16	SSR2 (ENSANAG00000024178) #17	UBQLN4 (ENSANAG00000031889) #18	LAMTOR2 (ENSANAG00000036124) #19	RAB25 (ENSANAG00000036045) #20	MEX3A (ENSANAG00000032597) #21	LMNA (ENSANAG00000028703) #22	SEMA4A (ENSANAG00000032935) #23	SLC25A44 (ENSANAG00000033058) #24	ENSANAG00000028929	BGLAP (ENSANAG00000034859) #27	PAQR6 (ENSANAG00000023514) #28	SMG5 (ENSANAG00000032899) #29	TMEM79 (ENSANAG00000028444) #30	GLMP (ENSANAG00000020224) #31	ENSANAG00000026737	CCT3 (ENSANAG00000036513) #32	TSACC (ENSANAG00000036292) #33	RHBG (ENSANAG00000024190) #34	ENSANAG00000033733	MEF2D (ENSANAG00000033064) #35	IQGAP3 (ENSANAG00000024137) #36
Tarsier	MODERN SPECIES	4936																LMNA (ENSTSYG00000012988) #22
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	750	RUSC1 (ENSPCOG00000025947) #7	ASH1L (ENSPCOG00000017924) #8	DAP3 (ENSPCOG00000027412) #9	MSTO1 (ENSPCOG00000017579) #10	ENSPCOG00000024149 #11	SYT11 (ENSPCOG00000017038) #12	RIT1 (ENSPCOG00000027211) #13	KHDC4 (ENSPCOG00000027660) #14	ARHGEF2 (ENSPCOG00000016528) #16	ENSPCOG00000019355	SSR2 (ENSPCOG00000022217) #17	UBQLN4 (ENSPCOG00000017664) #18	LAMTOR2 (ENSPCOG00000023468) #19	RAB25 (ENSPCOG00000005144) #20	MEX3A (ENSPCOG00000019307) #21	ENSPCOG00000028240 #22	SEMA4A (ENSPCOG00000021582) #23	SLC25A44 (ENSPCOG00000017429) #24	ENSPCOG00000022530	BGLAP (ENSPCOG00000020241) #27	PAQR6 (ENSPCOG00000024324) #28	SMG5 (ENSPCOG00000004741) #29	TMEM79 (ENSPCOG00000027811) #30	GLMP (ENSPCOG00000027438) #31	CCT3 (ENSPCOG00000027102) #32	TSACC (ENSPCOG00000018038) #33	RHBG (ENSPCOG00000010688) #34	MEF2D (ENSPCOG00000027219) #35	IQGAP3 (ENSPCOG00000028184) #36	TTC24 (ENSPCOG00000018517) #37	NAXE (ENSPCOG00000005557)
Coquerels sifaka	MODERN SPECIES	589	CCDC194 (ENSPCOG00000017156)	PLVAP (ENSPCOG00000025460)	GTPBP3 (ENSPCOG00000021581)	ANO8 (ENSPCOG00000017390)	DDA1 (ENSPCOG00000020928)	ENSPCOG00000020760	ENSPCOG00000018319	ANKLE1 (ENSPCOG00000002087)	BABAM1 (ENSPCOG00000019257)	USHBP1 (ENSPCOG00000028847)	NR2F6 (ENSPCOG00000018733)	OCEL1 (ENSPCOG00000019966)	USE1 (ENSPCOG00000023271)	MYO9B (ENSPCOG00000017503)	HAUS8 (ENSPCOG00000021851)	ENSPCOG00000024385 #22	ENSPCOG00000020455
Greater bamboo lemur	MODERN SPECIES	1146																LMNA (ENSPSMG00000021251) #22	SEMA4A (ENSPSMG00000021036) #23	SLC25A44 (ENSPSMG00000020969) #24	PMF1 (ENSPSMG00000020960) #25	BGLAP (ENSPSMG00000020939) #27	PAQR6 (ENSPSMG00000020927) #28	SMG5 (ENSPSMG00000020901) #29	TMEM79 (ENSPSMG00000020834) #30	GLMP (ENSPSMG00000020821) #31	ENSPSMG00000020737 #32	TSACC (ENSPSMG00000020661) #33
Mouse lemur	MODERN SPECIES	11	RUSC1 (ENSMICG00000029028) #7	ASH1L (ENSMICG00000007490) #8	DAP3 (ENSMICG00000031947) #9	MSTO1 (ENSMICG00000028414) #10	ENSMICG00000002183 #11	SYT11 (ENSMICG00000038586) #12	RIT1 (ENSMICG00000044667) #13	KHDC4 (ENSMICG00000002202) #14	ARHGEF2 (ENSMICG00000002212) #16	ENSMICG00000030729	ENSMICG00000038131 #17	UBQLN4 (ENSMICG00000002222) #18	LAMTOR2 (ENSMICG00000002227) #19	RAB25 (ENSMICG00000002230) #20	MEX3A (ENSMICG00000046214) #21	LMNA (ENSMICG00000002236) #22	SEMA4A (ENSMICG00000002242) #23	SLC25A44 (ENSMICG00000047168) #24	ENSMICG00000002248	BGLAP (ENSMICG00000045135) #27	PAQR6 (ENSMICG00000002252) #28	SMG5 (ENSMICG00000002257) #29	TMEM79 (ENSMICG00000002260) #30	GLMP (ENSMICG00000002263) #31	ENSMICG00000038362	ENSMICG00000030201 #32	TSACC (ENSMICG00000002266) #33	RHBG (ENSMICG00000017784) #34	MEF2D (ENSMICG00000034832) #35	IQGAP3 (ENSMICG00000008266) #36	TTC24 (ENSMICG00000008294) #37
Bushbaby	MODERN SPECIES	206	RUSC1 (ENSOGAG00000025498) #7	ASH1L (ENSOGAG00000009609) #8	DAP3 (ENSOGAG00000000845) #9	MSTO1 (ENSOGAG00000031236) #10	ENSOGAG00000000849 #11	SYT11 (ENSOGAG00000002258) #12	ENSOGAG00000002260 #13	KHDC4 (ENSOGAG00000002261) #14	ENSOGAG00000026040	ARHGEF2 (ENSOGAG00000011581) #16	SSR2 (ENSOGAG00000016945) #17	UBQLN4 (ENSOGAG00000016948) #18	LAMTOR2 (ENSOGAG00000016953) #19	RAB25 (ENSOGAG00000016955) #20	MEX3A (ENSOGAG00000029891) #21	LMNA (ENSOGAG00000016961) #22	SEMA4A (ENSOGAG00000025069) #23	ENSOGAG00000034650 #24	PMF1 (ENSOGAG00000004964) #25	BGLAP (ENSOGAG00000025659) #27	PAQR6 (ENSOGAG00000031893) #28	SMG5 (ENSOGAG00000004966) #29	TMEM79 (ENSOGAG00000012912) #30	GLMP (ENSOGAG00000030120) #31	CCT3 (ENSOGAG00000008967) #32	TSACC (ENSOGAG00000031578) #33	RHBG (ENSOGAG00000006682) #34	MEF2D (ENSOGAG00000011222) #35	IQGAP3 (ENSOGAG00000006690) #36	TTC24 (ENSOGAG00000030094) #37	NAXE (ENSOGAG00000034354)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157244 #22
Hedgehog	MODERN SPECIES	5326																LMNA (ENSEEUG00000010599) #22
Common shrew	MODERN SPECIES	4141																LMNA (ENSSARG00000000613) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000008765
Artiodactyla	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Suina	ANCESTRAL SPECIES	8	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00980000200110	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Chacoan peccary	MODERN SPECIES	139	ASH1L (ENSCWAG00000020727) #8	ENSCWAG00000020755	DAP3 (ENSCWAG00000020775) #9	MSTO1 (ENSCWAG00000020845) #10	ENSCWAG00000020896 #11	SYT11 (ENSCWAG00000020979) #12	RIT1 (ENSCWAG00000020995) #13	KHDC4 (ENSCWAG00000007841) #14	ENSCWAG00000007912	ARHGEF2 (ENSCWAG00000007966) #16	SSR2 (ENSCWAG00000008262) #17	UBQLN4 (ENSCWAG00000008403) #18	LAMTOR2 (ENSCWAG00000008520) #19	RAB25 (ENSCWAG00000008570) #20	MEX3A (ENSCWAG00000008643) #21	LMNA (ENSCWAG00000008705) #22	SEMA4A (ENSCWAG00000009047) #23	SLC25A44 (ENSCWAG00000009427) #24	ENSCWAG00000009485	BGLAP (ENSCWAG00000009559) #27	PAQR6 (ENSCWAG00000009611) #28	SMG5 (ENSCWAG00000009746) #29	ENSCWAG00000009845	GLMP (ENSCWAG00000009920) #31	CCT3 (ENSCWAG00000010037) #32	TSACC (ENSCWAG00000010146) #33	RHBG (ENSCWAG00000010166) #34	MEF2D (ENSCWAG00000010285) #35	IQGAP3 (ENSCWAG00000010428) #36	NAXE (ENSCWAG00000010793)	GPATCH4 (ENSCWAG00000010847)
Pig	MODERN SPECIES	12	ENSSSCG00000040632	ASH1L (ENSSSCG00000006508) #8	DAP3 (ENSSSCG00000006507) #9	MSTO1 (ENSSSCG00000006157) #10	ENSSSCG00000006510 #11	SYT11 (ENSSSCG00000006506) #12	RIT1 (ENSSSCG00000023991) #13	KHDC4 (ENSSSCG00000006504) #14	RXFP4 (ENSSSCG00000006503) #15	ARHGEF2 (ENSSSCG00000006502) #16	SSR2 (ENSSSCG00000006501) #17	UBQLN4 (ENSSSCG00000006500) #18	LAMTOR2 (ENSSSCG00000006499) #19	RAB25 (ENSSSCG00000039186) #20	MEX3A (ENSSSCG00000006497) #21	LMNA (ENSSSCG00000006496) #22	SEMA4A (ENSSSCG00000006495) #23	SLC25A44 (ENSSSCG00000006494) #24	PMF1 (ENSSSCG00000052919)	BGLAP (ENSSSCG00000055767) #27	PAQR6 (ENSSSCG00000006491) #28	SMG5 (ENSSSCG00000006490) #29	TMEM79 (ENSSSCG00000006489) #30	GLMP (ENSSSCG00000006488) #31	CCT3 (ENSSSCG00000006487) #32	TSACC (ENSSSCG00000006486) #33	RHBG (ENSSSCG00000035121) #34	MEF2D (ENSSSCG00000006482) #35	IQGAP3 (ENSSSCG00000006475) #36	TTC24 (ENSSSCG00000006479) #37	NAXE (ENSSSCG00000006480)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Cetacea	ANCESTRAL SPECIES		ENSGT00900000141074.k	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524.a.a #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Odontoceti	ANCESTRAL SPECIES		ENSGT00900000141074.k	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100.g.a #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524.a.a #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00900000141074.k	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100.g.a #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524.a.a.a #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00900000141074.k	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100.g.a #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524.a.a.a #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Monodontidae	ANCESTRAL SPECIES		ENSGT00900000141074.k	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100.g.a #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524.a.a.a #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Narwhal	MODERN SPECIES	304	ENSMMNG00015012598	RUSC1 (ENSMMNG00015012570) #7	ASH1L (ENSMMNG00015012492) #8	DAP3 (ENSMMNG00015012383) #9	MSTO1 (ENSMMNG00015012309) #10	ENSMMNG00015012250 #11	SYT11 (ENSMMNG00015012196) #12	RIT1 (ENSMMNG00015012172) #13	KHDC4 (ENSMMNG00015012142) #14	ARHGEF2 (ENSMMNG00015012060) #16	SSR2 (ENSMMNG00015012014) #17	UBQLN4 (ENSMMNG00015011968) #18	ENSMMNG00015011942 #19	RAB25 (ENSMMNG00015011919) #20	MEX3A (ENSMMNG00015011903) #21	LMNA (ENSMMNG00015011841) #22	SEMA4A (ENSMMNG00015011785) #23	SLC25A44 (ENSMMNG00015011755) #24	ENSMMNG00015011739	BGLAP (ENSMMNG00015011726) #27	ENSMMNG00015011675 #28	SMG5 (ENSMMNG00015011588) #29	TMEM79 (ENSMMNG00015011552) #30	GLMP (ENSMMNG00015011520) #31	CCT3 (ENSMMNG00015011489) #32	ENSMMNG00015011474 #33	RHBG (ENSMMNG00015011460) #34	MEF2D (ENSMMNG00015011394) #35	IQGAP3 (ENSMMNG00015011098) #36	TTC24 (ENSMMNG00015011000) #37	NAXE (ENSMMNG00015010984)
Beluga whale	MODERN SPECIES	69	PKLR (ENSDLEG00000015946)	FDPS (ENSDLEG00000016328)	RUSC1 (ENSDLEG00000016359) #7	ASH1L (ENSDLEG00000016452) #8	DAP3 (ENSDLEG00000016565) #9	MSTO1 (ENSDLEG00000017154) #10	ENSDLEG00000017562 #11	SYT11 (ENSDLEG00000017715) #12	RIT1 (ENSDLEG00000017727) #13	KIAA0907 (ENSDLEG00000017767) #14	ARHGEF2 (ENSDLEG00000018134) #16	SSR2 (ENSDLEG00000019690) #17	UBQLN4 (ENSDLEG00000019705) #18	ENSDLEG00000019714 #19	RAB25 (ENSDLEG00000019718) #20	LMNA (ENSDLEG00000019723) #22	MEX3A (ENSDLEG00000019727) #21	SEMA4A (ENSDLEG00000019729) #23	SLC25A44 (ENSDLEG00000019739) #24	ENSDLEG00000019747	BGLAP (ENSDLEG00000019752) #27	PAQR6 (ENSDLEG00000019756) #28	SMG5 (ENSDLEG00000019769) #29	TMEM79 (ENSDLEG00000019854) #30	GLMP (ENSDLEG00000019860) #31	CCT3 (ENSDLEG00000019863) #32	ENSDLEG00000019867 #33	RHBG (ENSDLEG00000019871) #34	MEF2D (ENSDLEG00000019879) #35	IQGAP3 (ENSDLEG00000019944) #36	NAXE (ENSDLEG00000020367)
Vaquita	MODERN SPECIES		ENSPSNG00000000654	RUSC1 (ENSPSNG00000000714) #7	ASH1L (ENSPSNG00000000798) #8	DAP3 (ENSPSNG00000000898) #9	MSTO1 (ENSPSNG00000000978) #10	ENSPSNG00000001061 #11	SYT11 (ENSPSNG00000001267) #12	RIT1 (ENSPSNG00000001303) #13	KHDC4 (ENSPSNG00000001328) #14	ARHGEF2 (ENSPSNG00000001483) #16	SSR2 (ENSPSNG00000001665) #17	UBQLN4 (ENSPSNG00000001709) #18	ENSPSNG00000001753 #19	RAB25 (ENSPSNG00000001780) #20	MEX3A (ENSPSNG00000001802) #21	LMNA (ENSPSNG00000001902) #22	SEMA4A (ENSPSNG00000001991) #23	SLC25A44 (ENSPSNG00000002061) #24	ENSPSNG00000002083	BGLAP (ENSPSNG00000002109) #27	PAQR6 (ENSPSNG00000002135) #28	SMG5 (ENSPSNG00000002185) #29	TMEM79 (ENSPSNG00000002228) #30	GLMP (ENSPSNG00000002245) #31	CCT3 (ENSPSNG00000002288) #32	ENSPSNG00000002309 #33	RHBG (ENSPSNG00000002332) #34	MEF2D (ENSPSNG00000002434) #35	IQGAP3 (ENSPSNG00000002502) #36	TTC24 (ENSPSNG00000002542) #37	NAXE (ENSPSNG00000002584)
Dolphin	MODERN SPECIES	1345																LMNA (ENSTTRG00000001395) #22	SEMA4A (ENSTTRG00000001397) #23	SLC25A44 (ENSTTRG00000001398) #24	ENSTTRG00000001399	ENSTTRG00000001400 #28	SMG5 (ENSTTRG00000001401) #29	TMEM79 (ENSTTRG00000001404) #30	GLMP (ENSTTRG00000001405) #31	CCT3 (ENSTTRG00000001407) #32	TSACC (ENSTTRG00000001408) #33
Sperm whale	MODERN SPECIES	365																LMNA (ENSPCTG00005019716) #22
Blue whale	MODERN SPECIES		RUSC1 (ENSBMSG00010003260) #7	ASH1L (ENSBMSG00010003357) #8	DAP3 (ENSBMSG00010003437) #9	MSTO1 (ENSBMSG00010003477) #10	ENSBMSG00010003566 #11	ENSBMSG00010004110	SYT11 (ENSBMSG00010004119) #12	RIT1 (ENSBMSG00010004147) #13	KHDC4 (ENSBMSG00010004174) #14	ARHGEF2 (ENSBMSG00010004265) #16	SSR2 (ENSBMSG00010004540) #17	UBQLN4 (ENSBMSG00010004574) #18	LAMTOR2 (ENSBMSG00010004612) #19	RAB25 (ENSBMSG00010004624) #20	MEX3A (ENSBMSG00010004637) #21	LMNA (ENSBMSG00010004668) #22	SEMA4A (ENSBMSG00010004700) #23	SLC25A44 (ENSBMSG00010004726) #24	ENSBMSG00010004738	BGLAP (ENSBMSG00010004757) #27	SMG5 (ENSBMSG00010004787) #29	TMEM79 (ENSBMSG00010004850) #30	GLMP (ENSBMSG00010004864) #31	CCT3 (ENSBMSG00010004881) #32	RHBG (ENSBMSG00010004893) #34	MEF2D (ENSBMSG00010004921) #35	ENSBMSG00010004948 #36	ENSBMSG00010005020 #36	TTC24 (ENSBMSG00010005032) #37	NAXE (ENSBMSG00010005042)	ENSBMSG00010005049
Pecora	ANCESTRAL SPECIES	2	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.i.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Yarkand deer	MODERN SPECIES	12	FDPS (ENSCHYG00000026456)	RUSC1 (ENSCHYG00000026489) #7	ASH1L (ENSCHYG00000026415) #8	ENSCHYG00000026325 #9	MSTO1 (ENSCHYG00000026231) #10	SYT11 (ENSCHYG00000026203) #12	RIT1 (ENSCHYG00000026149) #13	KHDC4 (ENSCHYG00000025994) #14	ENSCHYG00000025955	ARHGEF2 (ENSCHYG00000025091) #16	SSR2 (ENSCHYG00000024941) #17	UBQLN4 (ENSCHYG00000024829) #18	ENSCHYG00000024792 #19	RAB25 (ENSCHYG00000024758) #20	MEX3A (ENSCHYG00000024742) #21	LMNA (ENSCHYG00000024365) #22	SEMA4A (ENSCHYG00000024199) #23	SLC25A44 (ENSCHYG00000024104) #24	ENSCHYG00000024011	ENSCHYG00000023870 #28	SMG5 (ENSCHYG00000023680) #29	TMEM79 (ENSCHYG00000023640) #30	GLMP (ENSCHYG00000023522) #31	CCT3 (ENSCHYG00000023340) #32	TSACC (ENSCHYG00000023310) #33	RHBG (ENSCHYG00000023227) #34	MEF2D (ENSCHYG00000022984) #35	IQGAP3 (ENSCHYG00000022712) #36	TTC24 (ENSCHYG00000022576) #37	NAXE (ENSCHYG00000022519)	GPATCH4 (ENSCHYG00000022446)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.i.a.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Siberian musk deer	MODERN SPECIES	1202	ASH1L (ENSMMSG00000006966) #8	DAP3 (ENSMMSG00000006783) #9	MSTO1 (ENSMMSG00000006647) #10	ENSMMSG00000006603 #11	ENSMMSG00000005075 #11	SYT11 (ENSMMSG00000004948) #12	RIT1 (ENSMMSG00000004820) #13	KHDC4 (ENSMMSG00000022609) #14	RXFP4 (ENSMMSG00000022594) #15	ARHGEF2 (ENSMMSG00000022532) #16	SSR2 (ENSMMSG00000022486) #17	UBQLN4 (ENSMMSG00000022457) #18	LAMTOR2 (ENSMMSG00000022447) #19	RAB25 (ENSMMSG00000022435) #20	MEX3A (ENSMMSG00000022428) #21	LMNA (ENSMMSG00000022290) #22	ENSMMSG00000022232	SEMA4A (ENSMMSG00000022204) #23	SLC25A44 (ENSMMSG00000022189) #24	PMF1 (ENSMMSG00000022165) #25	BGLAP (ENSMMSG00000022141) #27	PAQR6 (ENSMMSG00000022081) #28	SMG5 (ENSMMSG00000022024) #29	TMEM79 (ENSMMSG00000022007) #30	GLMP (ENSMMSG00000021977) #31	CCT3 (ENSMMSG00000021905) #32	TSACC (ENSMMSG00000021888) #33	RHBG (ENSMMSG00000021854) #34	MEF2D (ENSMMSG00000021733) #35	IQGAP3 (ENSMMSG00000021624) #36	NAXE (ENSMMSG00000021541)
Bovidae	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.i.a.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37
Bovinae	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.i.a.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Bos	ANCESTRAL SPECIES		ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.i.a.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Bos_a	ANCESTRAL SPECIES	27	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.i.a.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00390000005534.b.b.c.b.a.a.b.a.b	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a
Domestic yak	MODERN SPECIES	22	MSTO1 (ENSBGRG00000020857) #10	ENSBGRG00000021040 #11	ENSBGRG00000021483	ENSBGRG00000021494 #11	SYT11 (ENSBGRG00000021562) #12	RIT1 (ENSBGRG00000021581) #13	KHDC4 (ENSBGRG00000021657) #14	ENSBGRG00000021933	ARHGEF2 (ENSBGRG00000022001) #16	SSR2 (ENSBGRG00000022293) #17	ENSBGRG00000022398	UBQLN4 (ENSBGRG00000022445) #18	ENSBGRG00000022629 #19	RAB25 (ENSBGRG00000022700) #20	MEX3A (ENSBGRG00000022736) #21	LMNA (ENSBGRG00000022777) #22	SEMA4A (ENSBGRG00000023018) #23	SLC25A44 (ENSBGRG00000023097) #24	ENSBGRG00000023141	BGLAP (ENSBGRG00000023200) #27	PAQR6 (ENSBGRG00000023244) #28	SMG5 (ENSBGRG00000023383) #29	ENSBGRG00000023682	GLMP (ENSBGRG00000023724) #31	CCT3 (ENSBGRG00000023849) #32	TSACC (ENSBGRG00000024207) #33	RHBG (ENSBGRG00000024238) #34	ENSBGRG00000024335	ENSBGRG00000024360 #35	ENSBGRG00000024425 #35	ENSBGRG00000024445
Wild yak	MODERN SPECIES	1034	RUSC1 (ENSBMUG00000013186) #7	ASH1L (ENSBMUG00000013247) #8	DAP3 (ENSBMUG00000013380) #9	MSTO1 (ENSBMUG00000013423) #10	ENSBMUG00000013609 #11	SYT11 (ENSBMUG00000013663) #12	RIT1 (ENSBMUG00000013671) #13	KHDC4 (ENSBMUG00000013747) #14	ENSBMUG00000013792	ARHGEF2 (ENSBMUG00000013945) #16	SSR2 (ENSBMUG00000014061) #17	UBQLN4 (ENSBMUG00000014079) #18	ENSBMUG00000014101 #19	RAB25 (ENSBMUG00000014113) #20	MEX3A (ENSBMUG00000014139) #21	LMNA (ENSBMUG00000014271) #22	SEMA4A (ENSBMUG00000014414) #23	SLC25A44 (ENSBMUG00000014438) #24	ENSBMUG00000014459	PAQR6 (ENSBMUG00000014479) #28	SMG5 (ENSBMUG00000014498) #29	TMEM79 (ENSBMUG00000014504) #30	GLMP (ENSBMUG00000014534) #31	CCT3 (ENSBMUG00000014597) #32	TSACC (ENSBMUG00000014639) #33	RHBG (ENSBMUG00000014644) #34	MEF2D (ENSBMUG00000014724) #35	ENSBMUG00000014767	IQGAP3 (ENSBMUG00000015133) #36	NAXE (ENSBMUG00000015409)	GPATCH4 (ENSBMUG00000015443)
Bos_b	ANCESTRAL SPECIES	1	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.i.a.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Cow	MODERN SPECIES	22	RUSC1 (ENSBTAG00000054061) #7	ASH1L (ENSBTAG00000003954) #8	DAP3 (ENSBTAG00000001199) #9	MSTO1 (ENSBTAG00000026613) #10	ENSBTAG00000045596 #11	GON4L (ENSBTAG00000020356) #11	SYT11 (ENSBTAG00000011209) #12	RIT1 (ENSBTAG00000000105) #13	KHDC4 (ENSBTAG00000000108)	ARHGEF2 (ENSBTAG00000000113) #16	SSR2 (ENSBTAG00000001212) #17	UBQLN4 (ENSBTAG00000001548) #18	LAMTOR2 (ENSBTAG00000011754) #19	RAB25 (ENSBTAG00000018914) #20	MEX3A (ENSBTAG00000019158) #21	LMNA (ENSBTAG00000017574) #22	SEMA4A (ENSBTAG00000012228) #23	SLC25A44 (ENSBTAG00000009431) #24	PMF1 (ENSBTAG00000009432)	BGLAP (ENSBTAG00000009433) #27	PAQR6 (ENSBTAG00000009434) #28	SMG5 (ENSBTAG00000009435) #29	TMEM79 (ENSBTAG00000009436) #30	GLMP (ENSBTAG00000006364) #31	CCT3 (ENSBTAG00000006370) #32	TSACC (ENSBTAG00000049722) #33	RHBG (ENSBTAG00000012234) #34	MEF2D (ENSBTAG00000046545) #35	ENSBTAG00000021649	IQGAP3 (ENSBTAG00000006882) #36	TTC24 (ENSBTAG00000000401) #37
Hybrid Bos Indicus	MODERN SPECIES	22	RUSC1 (ENSBIXG00005012185) #7	ASH1L (ENSBIXG00005012290) #8	DAP3 (ENSBIXG00005012416) #9	MSTO1 (ENSBIXG00005012454) #10	ENSBIXG00005000325 #11	SYT11 (ENSBIXG00005012585) #12	RIT1 (ENSBIXG00005012630) #13	KHDC4 (ENSBIXG00005012701) #14	ENSBIXG00005012726	ARHGEF2 (ENSBIXG00005012933) #16	SSR2 (ENSBIXG00005013052) #17	UBQLN4 (ENSBIXG00005007481) #18	LAMTOR2 (ENSBIXG00005013118) #19	RAB25 (ENSBIXG00005001504) #20	MEX3A (ENSBIXG00005013155) #21	LMNA (ENSBIXG00005013303) #22	SEMA4A (ENSBIXG00005013357) #23	SLC25A44 (ENSBIXG00005013383) #24	ENSBIXG00005013392	BGLAP (ENSBIXG00005013414) #27	PAQR6 (ENSBIXG00005001616) #28	SMG5 (ENSBIXG00005013497) #29	TMEM79 (ENSBIXG00005013531) #30	GLMP (ENSBIXG00005013569) #31	CCT3 (ENSBIXG00005013620) #32	TSACC (ENSBIXG00005013651) #33	RHBG (ENSBIXG00005013672) #34	MEF2D (ENSBIXG00005013762) #35	IQGAP3 (ENSBIXG00005013848) #36	NAXE (ENSBIXG00005013984)	GPATCH4 (ENSBIXG00005001766)
American bison	MODERN SPECIES	3022	ASH1L (ENSBBBG00000014991) #8	DAP3 (ENSBBBG00000003747) #9	MSTO1 (ENSBBBG00000015135) #10	ENSBBBG00000015141	ENSBBBG00000007558 #11	SYT11 (ENSBBBG00000003798) #12	RIT1 (ENSBBBG00000015315) #13	KHDC4 (ENSBBBG00000001328) #14	RXFP4 (ENSBBBG00000001313) #15	ARHGEF2 (ENSBBBG00000001262) #16	SSR2 (ENSBBBG00000003501) #17	UBQLN4 (ENSBBBG00000007559) #18	LAMTOR2 (ENSBBBG00000003825) #19	RAB25 (ENSBBBG00000003829) #20	MEX3A (ENSBBBG00000015363) #21	LMNA (ENSBBBG00000003866) #22	SEMA4A (ENSBBBG00000003444) #23	SLC25A44 (ENSBBBG00000003424) #24	PMF1 (ENSBBBG00000015627) #25	BGLAP (ENSBBBG00000015635) #27	PAQR6 (ENSBBBG00000015650) #28	SMG5 (ENSBBBG00000015667) #29	ENSBBBG00000003912	GLMP (ENSBBBG00000015689) #31	CCT3 (ENSBBBG00000015738) #32	TSACC (ENSBBBG00000015743) #33	RHBG (ENSBBBG00000003929) #34	MEF2D (ENSBBBG00000000772) #35	IQGAP3 (ENSBBBG00000007083) #36	NAXE (ENSBBBG00000016391)	GPATCH4 (ENSBBBG00000016396)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.i.a.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00390000008765
Goat	MODERN SPECIES	22	DAP3 (ENSCHIG00000017638) #9	MSTO1 (ENSCHIG00000027233) #10	ENSCHIG00000021776 #11	ENSCHIG00000011207 #11	ENSCHIG00000025192 #11	SYT11 (ENSCHIG00000021455) #12	RIT1 (ENSCHIG00000010506) #13	KHDC4 (ENSCHIG00000022965) #14	ENSCHIG00000012796	ARHGEF2 (ENSCHIG00000018812) #16	SSR2 (ENSCHIG00000027199) #17	UBQLN4 (ENSCHIG00000015053) #18	LAMTOR2 (ENSCHIG00000026461) #19	RAB25 (ENSCHIG00000018911) #20	MEX3A (ENSCHIG00000012770) #21	LMNA (ENSCHIG00000022777) #22	SEMA4A (ENSCHIG00000022763) #23	SLC25A44 (ENSCHIG00000011510) #24	ENSCHIG00000025721	BGLAP (ENSCHIG00000025718) #27	PAQR6 (ENSCHIG00000019473) #28	SMG5 (ENSCHIG00000007709) #29	TMEM79 (ENSCHIG00000024223) #30	GLMP (ENSCHIG00000018226) #31	CCT3 (ENSCHIG00000011665) #32	TSACC (ENSCHIG00000008701) #33	RHBG (ENSCHIG00000018535) #34	MEF2D (ENSCHIG00000010363) #35	IQGAP3 (ENSCHIG00000026372) #36	NAXE (ENSCHIG00000014440)	GPATCH4 (ENSCHIG00000021295)
Rambouillet Sheep	MODERN SPECIES		MSTO1 (ENSOARG00020013057) #10	ENSOARG00020013143 #11	ENSOARG00020013192 #11	ENSOARG00020013774 #11	SYT11 (ENSOARG00020013872) #12	RIT1 (ENSOARG00020013942) #13	KHDC4 (ENSOARG00020014119) #14	RXFP4 (ENSOARG00020014277) #15	ARHGEF2 (ENSOARG00020014346) #16	SSR2 (ENSOARG00020015600) #17	ENSOARG00020015739	UBQLN4 (ENSOARG00020015789) #18	LAMTOR2 (ENSOARG00020015838) #19	RAB25 (ENSOARG00020015913) #20	MEX3A (ENSOARG00020015946) #21	LMNA (ENSOARG00020016018) #22	SEMA4A (ENSOARG00020016412) #23	SLC25A44 (ENSOARG00020016505) #24	PMF1 (ENSOARG00020016596) #25	BGLAP (ENSOARG00020016735) #27	PAQR6 (ENSOARG00020016793) #28	SMG5 (ENSOARG00020016889) #29	TMEM79 (ENSOARG00020017071) #30	GLMP (ENSOARG00020017115) #31	CCT3 (ENSOARG00020017271) #32	TSACC (ENSOARG00020017382) #33	RHBG (ENSOARG00020017414) #34	MEF2D (ENSOARG00020017561) #35	IQGAP3 (ENSOARG00020018796) #36	NAXE (ENSOARG00020026107)	GPATCH4 (ENSOARG00020026108)
Camelidae	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000161384
Arabian camel	MODERN SPECIES	13	ENSCDRG00005008918	DAP3 (ENSCDRG00005008986) #9	ENSCDRG00005009290 #11	ENSCDRG00005009473 #11	MSTO1 (ENSCDRG00005009513) #10	SYT11 (ENSCDRG00005009687) #12	RIT1 (ENSCDRG00005009734) #13	ENSCDRG00005009887	RXFP4 (ENSCDRG00005009989) #15	ARHGEF2 (ENSCDRG00005010064) #16	SSR2 (ENSCDRG00005010971) #17	UBQLN4 (ENSCDRG00005011159) #18	LAMTOR2 (ENSCDRG00005011283) #19	RAB25 (ENSCDRG00005011364) #20	MEX3A (ENSCDRG00005011401) #21	LMNA (ENSCDRG00005011469) #22	SEMA4A (ENSCDRG00005011665) #23	SLC25A44 (ENSCDRG00005011792) #24	BGLAP (ENSCDRG00005011888) #27	PAQR6 (ENSCDRG00005011936) #28	SMG5 (ENSCDRG00005012076) #29	TMEM79 (ENSCDRG00005012417) #30	GLMP (ENSCDRG00005012477) #31	CCT3 (ENSCDRG00005012596) #32	TSACC (ENSCDRG00005012775) #33	RHBG (ENSCDRG00005012851) #34	MEF2D (ENSCDRG00005012987) #35	IQGAP3 (ENSCDRG00005013249) #36	NAXE (ENSCDRG00005013371)	ENSCDRG00005013417	HAPLN2 (ENSCDRG00005013516)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000008765
Carnivora	ANCESTRAL SPECIES	14	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Felidae	ANCESTRAL SPECIES	11	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Panthera	ANCESTRAL SPECIES	38	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Tiger	MODERN SPECIES	274	CLK2 (ENSPTIG00000010873)	HCN3 (ENSPTIG00000009244)	ENSPTIG00000008406	ASH1L (ENSPTIG00000019713) #8	DAP3 (ENSPTIG00000015443) #9	ENSPTIG00000013227 #11	ENSPTIG00000007985 #11	SYT11 (ENSPTIG00000007723) #12	RIT1 (ENSPTIG00000007045) #13	KHDC4 (ENSPTIG00000004498) #14	ENSPTIG00000001215 #16	SSR2 (ENSPTIG00000022102) #17	UBQLN4 (ENSPTIG00000022083) #18	LAMTOR2 (ENSPTIG00000022068) #19	RAB25 (ENSPTIG00000022049) #20	ENSPTIG00000021888 #22	SEMA4A (ENSPTIG00000016788) #23	SLC25A44 (ENSPTIG00000011099) #24	SMG5 (ENSPTIG00000007892) #29	TMEM79 (ENSPTIG00000007414) #30	GLMP (ENSPTIG00000004054) #31	CCT3 (ENSPTIG00000018610) #32	TSACC (ENSPTIG00000016816) #33	RHBG (ENSPTIG00000015826) #34	IQGAP3 (ENSPTIG00000013068) #36	TTC24 (ENSPTIG00000010925) #37	NAXE (ENSPTIG00000009667)	GPATCH4 (ENSPTIG00000006717)	ENSPTIG00000006345	BCAN (ENSPTIG00000000602)	NES (ENSPTIG00000021721)
Panthera_a	ANCESTRAL SPECIES	37	ENSGT00390000008859.b.c	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
leopard	MODERN SPECIES	138	FDPS (ENSPPRG00000017484)	ENSPPRG00000015592 #7	ASH1L (ENSPPRG00000014648) #8	ENSPPRG00000011971	DAP3 (ENSPPRG00000011800) #9	ENSPPRG00000008799 #11	SYT11 (ENSPPRG00000000652) #12	RIT1 (ENSPPRG00000000399) #13	KHDC4 (ENSPPRG00000021149) #14	ARHGEF2 (ENSPPRG00000018064) #16	SSR2 (ENSPPRG00000009542) #17	UBQLN4 (ENSPPRG00000008090) #18	LAMTOR2 (ENSPPRG00000007518) #19	RAB25 (ENSPPRG00000006611) #20	MEX3A (ENSPPRG00000006585) #21	LMNA (ENSPPRG00000003442) #22	SEMA4A (ENSPPRG00000024539) #23	ENSPPRG00000017448 #24	ENSPPRG00000016604 #24	ENSPPRG00000015181	BGLAP (ENSPPRG00000013703) #27	PAQR6 (ENSPPRG00000013590) #28	ENSPPRG00000012440 #28	SMG5 (ENSPPRG00000011901) #29	TMEM79 (ENSPPRG00000011226) #30	GLMP (ENSPPRG00000010044) #31	CCT3 (ENSPPRG00000008924) #32	TSACC (ENSPPRG00000007969) #33	RHBG (ENSPPRG00000007022) #34	MEF2D (ENSPPRG00000005807) #35	IQGAP3 (ENSPPRG00000004143) #36
lion	MODERN SPECIES	44	PKLR (ENSPLOG00000008753)	FDPS (ENSPLOG00000008651)	RUSC1 (ENSPLOG00000008579) #7	ASH1L (ENSPLOG00000008458) #8	ENSPLOG00000008379 #9	ENSPLOG00000008203 #11	SYT11 (ENSPLOG00000008151) #12	RIT1 (ENSPLOG00000008053) #13	KHDC4 (ENSPLOG00000007865) #14	ARHGEF2 (ENSPLOG00000007611) #16	SSR2 (ENSPLOG00000007527) #17	UBQLN4 (ENSPLOG00000007496) #18	LAMTOR2 (ENSPLOG00000007417) #19	RAB25 (ENSPLOG00000007385) #20	MEX3A (ENSPLOG00000007367) #21	LMNA (ENSPLOG00000007050) #22	SEMA4A (ENSPLOG00000006968) #23	SLC25A44 (ENSPLOG00000006937) #24	ENSPLOG00000006903	BGLAP (ENSPLOG00000006890) #27	PAQR6 (ENSPLOG00000006831) #28	SMG5 (ENSPLOG00000006798) #29	ENSPLOG00000006758	GLMP (ENSPLOG00000006693) #31	CCT3 (ENSPLOG00000006587) #32	TSACC (ENSPLOG00000006484) #33	RHBG (ENSPLOG00000006433) #34	MEF2D (ENSPLOG00000006383) #35	IQGAP3 (ENSPLOG00000006262) #36	ENSPLOG00000006205 #37	NAXE (ENSPLOG00000006161)
Cat	MODERN SPECIES	248	ASH1L (ENSFCAG00000012088) #8	DAP3 (ENSFCAG00000022787) #9	MSTO1 (ENSFCAG00000030966) #10	ENSFCAG00000012133 #11	SYT11 (ENSFCAG00000029675) #12	ENSFCAG00000037260 #13	RIT1 (ENSFCAG00000044860) #13	KHDC4 (ENSFCAG00000012137) #14	ARHGEF2 (ENSFCAG00000030294) #16	SSR2 (ENSFCAG00000043703) #17	ENSFCAG00000050566	UBQLN4 (ENSFCAG00000011772) #18	LAMTOR2 (ENSFCAG00000028596) #19	RAB25 (ENSFCAG00000011775) #20	MEX3A (ENSFCAG00000044236) #21	LMNA (ENSFCAG00000011776) #22	SEMA4A (ENSFCAG00000011779) #23	SLC25A44 (ENSFCAG00000011780) #24	PMF1 (ENSFCAG00000011781) #25	BGLAP (ENSFCAG00000048978) #27	PAQR6 (ENSFCAG00000000759) #28	SMG5 (ENSFCAG00000011783) #29	TMEM79 (ENSFCAG00000011787) #30	GLMP (ENSFCAG00000011788) #31	CCT3 (ENSFCAG00000011789) #32	TSACC (ENSFCAG00000029523) #33	RHBG (ENSFCAG00000011790) #34	MEF2D (ENSFCAG00000024020) #35	IQGAP3 (ENSFCAG00000006549) #36	TTC24 (ENSFCAG00000046777) #37	GPATCH4 (ENSFCAG00000006554)
Caniformia	ANCESTRAL SPECIES	10	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Ursidae	ANCESTRAL SPECIES	4	ENSGT00900000141074.p	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256.f #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125.d #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00390000008765
Ursus	ANCESTRAL SPECIES	154															ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00390000008765
American black bear	MODERN SPECIES	22															MEX3A (ENSUAMG00000013807) #21	LMNA (ENSUAMG00000013784) #22	SEMA4A (ENSUAMG00000013756) #23	SLC25A44 (ENSUAMG00000013742) #24	ENSUAMG00000013738	BGLAP (ENSUAMG00000013735) #27	PAQR6 (ENSUAMG00000013731) #28	SMG5 (ENSUAMG00000013721) #29	TMEM79 (ENSUAMG00000013715) #30	GLMP (ENSUAMG00000013710) #31	CCT3 (ENSUAMG00000013707) #32	TSACC (ENSUAMG00000013704) #33	RHBG (ENSUAMG00000013701) #34
Polar bear	MODERN SPECIES	200	ENSUMAG00000019472	FDPS (ENSUMAG00000019468)	ASH1L (ENSUMAG00000019455) #8	ENSUMAG00000019450 #8	DAP3 (ENSUMAG00000019443) #9	MSTO1 (ENSUMAG00000019384) #10	ENSUMAG00000018608 #11	SYT11 (ENSUMAG00000018466) #12	RIT1 (ENSUMAG00000018455) #13	KHDC4 (ENSUMAG00000018427) #14	ARHGEF2 (ENSUMAG00000018398) #16	SSR2 (ENSUMAG00000018391) #17	ENSUMAG00000018385 #18	ENSUMAG00000018379	RAB25 (ENSUMAG00000018376) #20	LMNA (ENSUMAG00000018354) #22	SEMA4A (ENSUMAG00000018344) #23	SLC25A44 (ENSUMAG00000018341) #24	ENSUMAG00000018338	BGLAP (ENSUMAG00000018334) #27	ENSUMAG00000018331	SMG5 (ENSUMAG00000018041) #29	GLMP (ENSUMAG00000017987) #31	CCT3 (ENSUMAG00000017983) #32	TSACC (ENSUMAG00000017979) #33	RHBG (ENSUMAG00000017948) #34	MEF2D (ENSUMAG00000017857) #35	IQGAP3 (ENSUMAG00000017820) #36	ENSUMAG00000017807	GPATCH4 (ENSUMAG00000017797)	ENSUMAG00000017794
Giant Panda	MODERN SPECIES	18	PKLR (ENSAMEG00000000055)	FDPS (ENSAMEG00000000050)	ENSAMEG00000026390 #7	ASH1L (ENSAMEG00000000049) #8	DAP3 (ENSAMEG00000000047) #9	MSTO1 (ENSAMEG00000000045) #10	ENSAMEG00000000043 #11	SYT11 (ENSAMEG00000000041) #12	RIT1 (ENSAMEG00000000040) #13	KHDC4 (ENSAMEG00000000037) #14	ARHGEF2 (ENSAMEG00000000035) #16	SSR2 (ENSAMEG00000014198) #17	ENSAMEG00000028885 #19	RAB25 (ENSAMEG00000014249) #20	MEX3A (ENSAMEG00000014265) #21	LMNA (ENSAMEG00000014270) #22	SEMA4A (ENSAMEG00000014336) #23	SLC25A44 (ENSAMEG00000014397) #24	PMF1 (ENSAMEG00000014403) #25	BGLAP (ENSAMEG00000014417) #27	PAQR6 (ENSAMEG00000014419) #28	SMG5 (ENSAMEG00000014458) #29	TMEM79 (ENSAMEG00000014512) #30	GLMP (ENSAMEG00000014517) #31	CCT3 (ENSAMEG00000014524) #32	TSACC (ENSAMEG00000025844) #33	RHBG (ENSAMEG00000014562) #34	MEF2D (ENSAMEG00000014630) #35	IQGAP3 (ENSAMEG00000014672) #36	NAXE (ENSAMEG00000014814)	GPATCH4 (ENSAMEG00000014829)
Mustelinae	ANCESTRAL SPECIES	23	ENSGT00900000141074.m	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Ferret	MODERN SPECIES	441	ENSMPUG00000005496	ENSMPUG00000005484 #7	ASH1L (ENSMPUG00000005465) #8	DAP3 (ENSMPUG00000005314) #9	MSTO1 (ENSMPUG00000005298) #10	ENSMPUG00000005274 #11	SYT11 (ENSMPUG00000005268) #12	RIT1 (ENSMPUG00000005245) #13	KHDC4 (ENSMPUG00000005186) #14	ARHGEF2 (ENSMPUG00000005016) #16	SSR2 (ENSMPUG00000004963) #17	UBQLN4 (ENSMPUG00000004855) #18	LAMTOR2 (ENSMPUG00000004826) #19	RAB25 (ENSMPUG00000004790) #20	MEX3A (ENSMPUG00000004774) #21	LMNA (ENSMPUG00000004761) #22	SEMA4A (ENSMPUG00000004742) #23	SLC25A44 (ENSMPUG00000004717) #24	PMF1 (ENSMPUG00000004672) #25	BGLAP (ENSMPUG00000004628) #27	PAQR6 (ENSMPUG00000004566) #28	SMG5 (ENSMPUG00000004546) #29	TMEM79 (ENSMPUG00000004531) #30	GLMP (ENSMPUG00000004537) #31	CCT3 (ENSMPUG00000004401) #32	TSACC (ENSMPUG00000004391) #33	RHBG (ENSMPUG00000004385) #34	ENSMPUG00000018432	MEF2D (ENSMPUG00000004235) #35	ENSMPUG00000018431	IQGAP3 (ENSMPUG00000004216) #36
American mink	MODERN SPECIES	260	PKLR (ENSNVIG00000019507)	FDPS (ENSNVIG00000019613)	ENSNVIG00000019622 ##7	ASH1L (ENSNVIG00000019642) #8	DAP3 (ENSNVIG00000019822) #9	MSTO1 (ENSNVIG00000019933) #10	ENSNVIG00000019964 #11	SYT11 (ENSNVIG00000020257) #12	RIT1 (ENSNVIG00000020272) #13	ENSNVIG00000020342 #14	ARHGEF2 (ENSNVIG00000020356) #16	SSR2 (ENSNVIG00000020385) #17	UBQLN4 (ENSNVIG00000020416) #18	LAMTOR2 (ENSNVIG00000020427) #19	RAB25 (ENSNVIG00000020433) #20	LMNA (ENSNVIG00000020473) #22	SEMA4A (ENSNVIG00000020558) #23	SLC25A44 (ENSNVIG00000020603) #24	ENSNVIG00000020609	BGLAP (ENSNVIG00000020619) #27	ENSNVIG00000020635 #28	SMG5 (ENSNVIG00000020654) #29	ENSNVIG00000020679	GLMP (ENSNVIG00000020700) #31	CCT3 (ENSNVIG00000020748) #32	TSACC (ENSNVIG00000020774) #33	RHBG (ENSNVIG00000020780) #34	ENSNVIG00000020791 #35	IQGAP3 (ENSNVIG00000020810) #36	TTC24 (ENSNVIG00000020904) #37	NAXE (ENSNVIG00000020938)
Canidae	ANCESTRAL SPECIES	1	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Dingo	MODERN SPECIES	271	FDPS (ENSCAFG00020006959)	ENSCAFG00020006949 #7	ASH1L (ENSCAFG00020006713) #8	DAP3 (ENSCAFG00020006662) #9	MSTO1 (ENSCAFG00020006658) #10	ENSCAFG00020006650 #11	SYT11 (ENSCAFG00020006484) #12	RIT1 (ENSCAFG00020006481) #13	KHDC4 (ENSCAFG00020006317) #14	ARHGEF2 (ENSCAFG00020006291) #16	SSR2 (ENSCAFG00020006268) #17	UBQLN4 (ENSCAFG00020006198) #18	ENSCAFG00020006183 #19	RAB25 (ENSCAFG00020006179) #20	MEX3A (ENSCAFG00020006171) #21	LMNA (ENSCAFG00020006147) #22	SEMA4A (ENSCAFG00020006101) #23	SLC25A44 (ENSCAFG00020006099) #24	ENSCAFG00020006096	BGLAP (ENSCAFG00020006091) #27	PAQR6 (ENSCAFG00020006075) #28	SMG5 (ENSCAFG00020006061) #29	TMEM79 (ENSCAFG00020006056) #30	GLMP (ENSCAFG00020006053) #31	CCT3 (ENSCAFG00020005487) #32	TSACC (ENSCAFG00020005438) #33	RHBG (ENSCAFG00020005431) #34	MEF2D (ENSCAFG00020005413) #35	IQGAP3 (ENSCAFG00020005293) #36	NAXE (ENSCAFG00020005285)	ENSCAFG00020005274
Dog	MODERN SPECIES	35	FDPS (ENSCAFG00845011910)	RUSC1 (ENSCAFG00845011825) #7	ASH1L (ENSCAFG00845011740) #8	DAP3 (ENSCAFG00845011528) #9	MSTO1 (ENSCAFG00845011422) #10	ENSCAFG00845011319 #11	SYT11 (ENSCAFG00845011235) #12	RIT1 (ENSCAFG00845011170) #13	KHDC4 (ENSCAFG00845011090) #14	ARHGEF2 (ENSCAFG00845010726) #16	SSR2 (ENSCAFG00845010530) #17	UBQLN4 (ENSCAFG00845010456) #18	LAMTOR2 (ENSCAFG00845010372) #19	RAB25 (ENSCAFG00845010319) #20	MEX3A (ENSCAFG00845010291) #21	LMNA (ENSCAFG00845010163) #22	SEMA4A (ENSCAFG00845010023) #23	SLC25A44 (ENSCAFG00845009963) #24	BGLAP (ENSCAFG00845009909) #27	SMG5 (ENSCAFG00845009772) #29	PAQR6 (ENSCAFG00845009665) #28	TMEM79 (ENSCAFG00845009619) #30	GLMP (ENSCAFG00845009558) #31	CCT3 (ENSCAFG00845009435) #32	RHBG (ENSCAFG00845009336) #34	MEF2D (ENSCAFG00845009027) #35	IQGAP3 (ENSCAFG00845008852) #36	ENSCAFG00845008793 #37	NAXE (ENSCAFG00845008732)	ENSCAFG00845008688	HAPLN2 (ENSCAFG00845008623)
Red fox	MODERN SPECIES	23	FDPS (ENSVVUG00000004041)	RUSC1 (ENSVVUG00000004055) #7	ASH1L (ENSVVUG00000004069) #8	DAP3 (ENSVVUG00000004090) #9	MSTO1 (ENSVVUG00000004113) #10	ENSVVUG00000004239 #11	SYT11 (ENSVVUG00000005667) #12	RIT1 (ENSVVUG00000005671) #13	KHDC4 (ENSVVUG00000005679) #14	ARHGEF2 (ENSVVUG00000005746) #16	SSR2 (ENSVVUG00000005756) #17	UBQLN4 (ENSVVUG00000005763) #18	LAMTOR2 (ENSVVUG00000005816) #19	RAB25 (ENSVVUG00000005821) #20	MEX3A (ENSVVUG00000005834) #21	LMNA (ENSVVUG00000005843) #22	ENSVVUG00000005853 #23	ENSVVUG00000005856 #23	SLC25A44 (ENSVVUG00000005863) #24	ENSVVUG00000005870	BGLAP (ENSVVUG00000005877) #27	PAQR6 (ENSVVUG00000005883) #28	SMG5 (ENSVVUG00000005887) #29	TMEM79 (ENSVVUG00000005892) #30	GLMP (ENSVVUG00000005893) #31	CCT3 (ENSVVUG00000005916) #32	ENSVVUG00000005925 #33	RHBG (ENSVVUG00000005930) #34	MEF2D (ENSVVUG00000005939) #35	IQGAP3 (ENSVVUG00000005972) #36	NAXE (ENSVVUG00000005999)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Megabat	MODERN SPECIES	1703																LMNA (ENSPVAG00000016740) #22	SEMA4A (ENSPVAG00000016741) #23	SLC25A44 (ENSPVAG00000016744) #24	ENSPVAG00000016745	ENSPVAG00000016747 #28	SMG5 (ENSPVAG00000016748) #29	GLMP (ENSPVAG00000016753) #31	CCT3 (ENSPVAG00000016756) #32	TSACC (ENSPVAG00000016762) #33	ENSPVAG00000016764
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Microbat	MODERN SPECIES	1148	RUSC1 (ENSMLUG00000013446) #7	ASH1L (ENSMLUG00000013461) #8	DAP3 (ENSMLUG00000005848) #9	MSTO1 (ENSMLUG00000009855) #10	ENSMLUG00000009868 #11	SYT11 (ENSMLUG00000009918) #12	RIT1 (ENSMLUG00000009935) #13	KHDC4 (ENSMLUG00000009967) #14	RXFP4 (ENSMLUG00000010023) #15	ARHGEF2 (ENSMLUG00000010039) #16	SSR2 (ENSMLUG00000010102) #17	UBQLN4 (ENSMLUG00000010131) #18	ENSMLUG00000023871 #19	RAB25 (ENSMLUG00000010153) #20	MEX3A (ENSMLUG00000010185) #21	LMNA (ENSMLUG00000026412) #22	SEMA4A (ENSMLUG00000000639) #23	SLC25A44 (ENSMLUG00000008481) #24	PMF1 (ENSMLUG00000008489) #25	BGLAP (ENSMLUG00000029723) #27	PAQR6 (ENSMLUG00000008500) #28	SMG5 (ENSMLUG00000008518) #29	TMEM79 (ENSMLUG00000008551) #30	GLMP (ENSMLUG00000008556) #31	CCT3 (ENSMLUG00000015678) #32	RHBG (ENSMLUG00000008585) #34	ENSMLUG00000030150	ENSMLUG00000029510	MEF2D (ENSMLUG00000013967) #35	IQGAP3 (ENSMLUG00000009473) #36	TTC24 (ENSMLUG00000009528) #37
Greater horseshoe bat	MODERN SPECIES	14	RUSC1 (ENSRFEG00010013073) #7	ASH1L (ENSRFEG00010013223) #8	DAP3 (ENSRFEG00010013351) #9	MSTO1 (ENSRFEG00010013673) #10	ENSRFEG00010013759 #11	SYT11 (ENSRFEG00010014057) #12	RIT1 (ENSRFEG00010014140) #13	KHDC4 (ENSRFEG00010014273) #14	RXFP4 (ENSRFEG00010014369) #15	ARHGEF2 (ENSRFEG00010014408) #16	SSR2 (ENSRFEG00010014692) #17	UBQLN4 (ENSRFEG00010014900) #18	ENSRFEG00010014949 #19	RAB25 (ENSRFEG00010015038) #20	MEX3A (ENSRFEG00010015157) #21	LMNA (ENSRFEG00010015236) #22	SEMA4A (ENSRFEG00010015377) #23	SLC25A44 (ENSRFEG00010015502) #24	PMF1 (ENSRFEG00010015555) #25	BGLAP (ENSRFEG00010015652) #27	PAQR6 (ENSRFEG00010015723) #28	SMG5 (ENSRFEG00010015872) #29	TMEM79 (ENSRFEG00010015938) #30	GLMP (ENSRFEG00010016041) #31	CCT3 (ENSRFEG00010010707) #32	TSACC (ENSRFEG00010010848) #33	RHBG (ENSRFEG00010010915) #34	MEF2D (ENSRFEG00010010994) #35	IQGAP3 (ENSRFEG00010011228) #36	NAXE (ENSRFEG00010012092)	GPATCH4 (ENSRFEG00010012165)
Equus	ANCESTRAL SPECIES	3	ENSGT00900000141074	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Donkey	MODERN SPECIES	17	ENSEASG00005010484	ENSEASG00005019185 #8	ENSEASG00005024932	DAP3 (ENSEASG00005019165) #9	ENSEASG00005019163 #10	ENSEASG00005019154 #11	SYT11 (ENSEASG00005019151) #12	RIT1 (ENSEASG00005019149) #13	KHDC4 (ENSEASG00005019143) #14	ARHGEF2 (ENSEASG00005019138) #16	SSR2 (ENSEASG00005019136) #17	UBQLN4 (ENSEASG00005019135) #18	LAMTOR2 (ENSEASG00005031172) #19	RAB25 (ENSEASG00005019133) #20	MEX3A (ENSEASG00005031469) #21	LMNA (ENSEASG00005019130) #22	SEMA4A (ENSEASG00005019129) #23	SLC25A44 (ENSEASG00005019128) #24	ENSEASG00005019127 #27	PAQR6 (ENSEASG00005019125) #28	SMG5 (ENSEASG00005019122) #29	TMEM79 (ENSEASG00005019119) #30	GLMP (ENSEASG00005019116) #31	CCT3 (ENSEASG00005019113) #32	TSACC (ENSEASG00005019110) #33	RHBG (ENSEASG00005019109) #34	MEF2D (ENSEASG00005019100) #35	IQGAP3 (ENSEASG00005018530) #36	TTC24 (ENSEASG00005030608) #37	NAXE (ENSEASG00005030968)	GPATCH4 (ENSEASG00005018284)
Horse	MODERN SPECIES	26	RUSC1 (ENSECAG00000023262) #7	ASH1L (ENSECAG00000018527) #8	ENSECAG00000049880	DAP3 (ENSECAG00000016401) #9	MSTO1 (ENSECAG00000008798) #10	SYT11 (ENSECAG00000019725) #12	ENSECAG00000019775 #11	RIT1 (ENSECAG00000015714) #13	KHDC4 (ENSECAG00000011569) #14	ARHGEF2 (ENSECAG00000013759) #16	SSR2 (ENSECAG00000013740) #17	UBQLN4 (ENSECAG00000009993) #18	LAMTOR2 (ENSECAG00000009193) #19	RAB25 (ENSECAG00000023191) #20	MEX3A (ENSECAG00000007279) #21	LMNA (ENSECAG00000011097) #22	SEMA4A (ENSECAG00000008622) #23	SLC25A44 (ENSECAG00000007577) #24	ENSECAG00000005938	SMG5 (ENSECAG00000001389) #29	TMEM79 (ENSECAG00000001165) #30	GLMP (ENSECAG00000024928) #31	CCT3 (ENSECAG00000020633) #32	TSACC (ENSECAG00000020624) #33	RHBG (ENSECAG00000013494) #34	MEF2D (ENSECAG00000020356) #35	ENSECAG00000053296	IQGAP3 (ENSECAG00000020111) #36	TTC24 (ENSECAG00000019286) #37	NAXE (ENSECAG00000013968)	GPATCH4 (ENSECAG00000011135)
Atlantogenata	ANCESTRAL SPECIES	15	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Afrotheria	ANCESTRAL SPECIES	36	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Tenrec	MODERN SPECIES	5182																LMNA (ENSETEG00000010326) #22	SEMA4A (ENSETEG00000010330) #23	SLC25A44 (ENSETEG00000010331) #24	ENSETEG00000010334 #28	SMG5 (ENSETEG00000010336) #29	TMEM79 (ENSETEG00000010339) #30	GLMP (ENSETEG00000010343) #31	CCT3 (ENSETEG00000010344) #32
Afrotheria_a	ANCESTRAL SPECIES	37	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00530000064067 #10	ENSGT00390000016256 #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT01030000234534.B.a.a.b #15	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Elephant	MODERN SPECIES	325	ASH1L (ENSLAFG00000002197) #8	DAP3 (ENSLAFG00000005200) #9	MSTO1 (ENSLAFG00000006224) #10	ENSLAFG00000005205 #11	SYT11 (ENSLAFG00000030067) #12	RIT1 (ENSLAFG00000014967) #13	KHDC4 (ENSLAFG00000014971) #14	RXFP4 (ENSLAFG00000011205) #15	ARHGEF2 (ENSLAFG00000011210) #16	SLC25A44 (ENSLAFG00000022753) #24	SSR2 (ENSLAFG00000011219) #17	UBQLN4 (ENSLAFG00000011221) #18	LAMTOR2 (ENSLAFG00000029041) #19	RAB25 (ENSLAFG00000009222) #20	MEX3A (ENSLAFG00000009220) #21	LMNA (ENSLAFG00000002832) #22	SEMA4A (ENSLAFG00000002834) #23	PMF1 (ENSLAFG00000025558) #25	BGLAP (ENSLAFG00000016824) #27	PAQR6 (ENSLAFG00000026867) #28	SMG5 (ENSLAFG00000006241) #29	TMEM79 (ENSLAFG00000027928) #30	GLMP (ENSLAFG00000005387) #31	CCT3 (ENSLAFG00000005391) #32	TSACC (ENSLAFG00000005393) #33	RHBG (ENSLAFG00000005397) #34	MEF2D (ENSLAFG00000015564) #35	IQGAP3 (ENSLAFG00000003433) #36	ENSLAFG00000003438 #37	NAXE (ENSLAFG00000005283)	ENSLAFG00000028327
Hyrax	MODERN SPECIES	11196																LMNA (ENSPCAG00000012533) #22
Xenarthra	ANCESTRAL SPECIES	37											ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000164230	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Armadillo	MODERN SPECIES	1939											SSR2 (ENSDNOG00000017062) #17	ENSDNOG00000017067 #18	LAMTOR2 (ENSDNOG00000017068) #19	RAB25 (ENSDNOG00000039155) #20	ENSDNOG00000037981 #21	LMNA (ENSDNOG00000010869) #22	ENSDNOG00000035727 #23
Sloth	MODERN SPECIES	4770																LMNA (ENSCHOG00000007028) #22
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00390000016256.b #11	ENSGT00530000064067 #10	ENSGT00390000016256.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00390000016256.b #11	ENSGT00530000064067 #10	ENSGT00390000016256.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Diprotodontia	ANCESTRAL SPECIES	30	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00390000016256.b #11	ENSGT00530000064067 #10	ENSGT00390000016256.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
Diprotodontia_a	ANCESTRAL SPECIES	28	ENSGT00900000141033.b.b #7	ENSGT00940000156698 #8	ENSGT00390000015248 #9	ENSGT00390000016256.b #11	ENSGT00530000064067 #10	ENSGT00390000016256.a #11	ENSGT00940000159088 #12	ENSGT00940000160132 #13	ENSGT00510000047412.a #14	ENSGT00940000158341 #16	ENSGT00390000005125 #17	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290 #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000012524 #33	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a
koala	MODERN SPECIES	42	DAP3 (ENSPCIG00000021692) #9	ENSPCIG00000021691 #11	ENSPCIG00000035411	MSTO1 (ENSPCIG00000021688) #10	ENSPCIG00000019134 #11	ENSPCIG00000031923 #11	SYT11 (ENSPCIG00000036428) #12	RIT1 (ENSPCIG00000019094) #13	KHDC4 (ENSPCIG00000019084) #14	ARHGEF2 (ENSPCIG00000019069) #16	SSR2 (ENSPCIG00000019065) #17	UBQLN4 (ENSPCIG00000018959) #18	LAMTOR2 (ENSPCIG00000018952) #19	RAB25 (ENSPCIG00000018951) #20	MEX3A (ENSPCIG00000018950) #21	LMNA (ENSPCIG00000018949) #22	SEMA4A (ENSPCIG00000018948) #23	SLC25A44 (ENSPCIG00000018947) #24	PMF1 (ENSPCIG00000018946) #25	PAQR6 (ENSPCIG00000018944) #28	SMG5 (ENSPCIG00000018938) #29	TMEM79 (ENSPCIG00000018937) #30	GLMP (ENSPCIG00000018935) #31	CCT3 (ENSPCIG00000018933) #32	TSACC (ENSPCIG00000018932) #33	RHBG (ENSPCIG00000018705) #34	MEF2D (ENSPCIG00000024228) #35	IQGAP3 (ENSPCIG00000024229) #36	TTC24 (ENSPCIG00000024231) #37	NAXE (ENSPCIG00000024232)	ENSPCIG00000031639
Common wonbat	MODERN SPECIES	1035	ENSVURG00010014964 #9	ENSVURG00010014951 #11	ENSVURG00010014937	MSTO1 (ENSVURG00010014920) #10	ENSVURG00010014888 #11	SYT11 (ENSVURG00010014876) #12	RIT1 (ENSVURG00010014864) #13	KHDC4 (ENSVURG00010014857) #14	ENSVURG00010014832	ARHGEF2 (ENSVURG00010014790) #16	SSR2 (ENSVURG00010014748) #17	UBQLN4 (ENSVURG00010014662) #18	LAMTOR2 (ENSVURG00010014640) #19	RAB25 (ENSVURG00010014628) #20	MEX3A (ENSVURG00010014622) #21	LMNA (ENSVURG00010014586) #22	SEMA4A (ENSVURG00010014559) #23	SLC25A44 (ENSVURG00010014546) #24	PMF1 (ENSVURG00010014537) #25	BGLAP (ENSVURG00010014520) #27	PAQR6 (ENSVURG00010014505) #28	SMG5 (ENSVURG00010014439) #29	TMEM79 (ENSVURG00010014422) #30	GLMP (ENSVURG00010014413) #31	CCT3 (ENSVURG00010014395) #32	ENSVURG00010014387 #33	RHBG (ENSVURG00010014362) #34	MEF2D (ENSVURG00010014293) #35	IQGAP3 (ENSVURG00010014258) #36	NAXE (ENSVURG00010014244)	ENSVURG00010014235
Wallaby	MODERN SPECIES	6518																LMNA (ENSMEUG00000006464) #22
Tasmanian devil	MODERN SPECIES	3	ASH1L (ENSSHAG00000009472) #8	ENSSHAG00000028324 #9	ENSSHAG00000011327 #11	ENSSHAG00000030016	ENSSHAG00000011742 #10	ENSSHAG00000011779 #11	ENSSHAG00000012239 #12	RIT1 (ENSSHAG00000012524) #13	KHDC4 (ENSSHAG00000012665) #14	ARHGEF2 (ENSSHAG00000020979) #16	ENSSHAG00000012964 #17	UBQLN4 (ENSSHAG00000013254) #18	LAMTOR2 (ENSSHAG00000013314) #19	RAB25 (ENSSHAG00000013327) #20	MEX3A (ENSSHAG00000032241) #21	LMNA (ENSSHAG00000013712) #22	SEMA4A (ENSSHAG00000013803) #23	SLC25A44 (ENSSHAG00000023169) #24	PMF1 (ENSSHAG00000013991) #25	BGLAP (ENSSHAG00000022571) #27	PAQR6 (ENSSHAG00000014101) #28	SMG5 (ENSSHAG00000014163) #29	TMEM79 (ENSSHAG00000014298) #30	ENSSHAG00000014320 #31	CCT3 (ENSSHAG00000014346) #32	TSACC (ENSSHAG00000024448) #33	RHBG (ENSSHAG00000014508) #34	MEF2D (ENSSHAG00000014927) #35	IQGAP3 (ENSSHAG00000015187) #36	ENSSHAG00000015427 #37	ENSSHAG00000020807
Opossum	MODERN SPECIES	1	RUSC1 (ENSMODG00000017044) #7	ASH1L (ENSMODG00000017033) #8	DAP3 (ENSMODG00000017024) #9	ENSMODG00000025668 #11	MSTO1 (ENSMODG00000017015) #10	ENSMODG00000017006 #11	SYT11 (ENSMODG00000016994) #12	RIT1 (ENSMODG00000016989) #13	KHDC4 (ENSMODG00000016981) #14	ARHGEF2 (ENSMODG00000016970) #16	SSR2 (ENSMODG00000016964) #17	UBQLN4 (ENSMODG00000016961) #18	LAMTOR2 (ENSMODG00000016959) #19	RAB25 (ENSMODG00000048622) #20	MEX3A (ENSMODG00000016954) #21	LMNA (ENSMODG00000016946) #22	SEMA4A (ENSMODG00000016928) #23	SLC25A44 (ENSMODG00000016921) #24	PMF1 (ENSMODG00000016918) #25	ENSMODG00000016914 #27	PAQR6 (ENSMODG00000016910) #28	SMG5 (ENSMODG00000016901) #29	TMEM79 (ENSMODG00000016892) #30	GLMP (ENSMODG00000016888) #31	CCT3 (ENSMODG00000016883) #32	TSACC (ENSMODG00000016872) #33	RHBG (ENSMODG00000016867) #34	MEF2D (ENSMODG00000016861) #35	IQGAP3 (ENSMODG00000016849) #36	ENSMODG00000045953 #37	NAXE (ENSMODG00000016821)
Platypus	MODERN SPECIES	88	FDPS (ENSOANG00000051014)	ENSOANG00000043091 #7	DAP3 (ENSOANG00000031925) #9	ENSOANG00000042137	ENSOANG00000049330 #11	SYT11 (ENSOANG00000042253) #12	KHDC4 (ENSOANG00000031515) #14	ARHGEF2 (ENSOANG00000047409) #16	SSR2 (ENSOANG00000041072) #17	UBQLN4 (ENSOANG00000040199) #18	ENSOANG00000039502 #19	RAB25 (ENSOANG00000036213) #20	MEX3A (ENSOANG00000039670) #21	ENSOANG00000048604	ENSOANG00000041083	LMNA (ENSOANG00000012813) #22	SEMA4A (ENSOANG00000009659) #23	SLC25A44 (ENSOANG00000043363) #24	ENSOANG00000050835 #25	ENSOANG00000036654	SMG5 (ENSOANG00000048288) #29	GLMP (ENSOANG00000031128) #31	CCT3 (ENSOANG00000003511) #32	ENSOANG00000046848 #36	MEF2D (ENSOANG00000049864) #35	RHBG (ENSOANG00000044068) #34	HAPLN2 (ENSOANG00000031852)	ENSOANG00000044512	ENSOANG00000040887	ENSOANG00000041452	CRABP2 (ENSOANG00000038309)
Sauria	ANCESTRAL SPECIES	28	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b #15	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Lepidosauria	ANCESTRAL SPECIES	36				ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b #15	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847	ENSGT00390000002799
Episquamata	ANCESTRAL SPECIES	33	ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00940000167298	ENSGT00410000026290.i #27
Toxicofera	ANCESTRAL SPECIES	61					ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451
Elapidae	ANCESTRAL SPECIES	41		ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151	ENSGT00640000091486.a	ENSGT00390000018613.b	ENSGT00940000164681	ENSGT00390000011180
Indian cobra	MODERN SPECIES	17	ENSNNAG00000018802	ENSNNAG00000018804	RHBG (ENSNNAG00000018811) #34	ENSNNAG00000018829	ENSNNAG00000018839	HAPLN2 (ENSNNAG00000018844)	MEF2D (ENSNNAG00000018857) #35	IQGAP3 (ENSNNAG00000018874) #36	NAXE (ENSNNAG00000018884)	UBQLN4 (ENSNNAG00000018894) #18	LAMTOR2 (ENSNNAG00000018899) #19	RAB25 (ENSNNAG00000018902) #20	ENSNNAG00000018907	ENSNNAG00000018909	MEX3A (ENSNNAG00000018913) #21	LMNA (ENSNNAG00000018915) #22	SEMA4A (ENSNNAG00000018920) #23	SLC25A44 (ENSNNAG00000018928) #24	BGLAP (ENSNNAG00000018931) #27	ENSNNAG00000018936	ENSNNAG00000018941	ENSNNAG00000018945	ENSNNAG00000018946	CX3CR1 (ENSNNAG00000018948)	ENSNNAG00000018951	ENSNNAG00000018956	ENSNNAG00000018960	ENSNNAG00000018962	NHLH1 (ENSNNAG00000018963)	NCSTN (ENSNNAG00000018964)	COPA (ENSNNAG00000018975)
Elapidae_a	ANCESTRAL SPECIES	94		ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151	ENSGT00640000091486.a	ENSGT00390000018613.b	ENSGT00940000164681	ENSGT00390000011180	ENSGT00390000007071	ENSGT00390000008714.a	ENSGT00550000075099
Acanthophiinae	ANCESTRAL SPECIES	81	ENSGT00900000141164	ENSGT00940000165651	ENSGT00940000157343.c.b	ENSGT00940000157343.c.a	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000163126	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00960000192439.a	ENSGT01020000230359.A	ENSGT00390000012496.b	ENSGT00940000162770.p.b	ENSGT00940000162622	ENSGT00390000014633	ENSGT00940000155451.s	ENSGT00510000048151	ENSGT00640000091486.a	ENSGT00390000018613.b	ENSGT00940000164681	ENSGT00390000011180	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272
Eastern brown snake	MODERN SPECIES	96	ENSPTXG00000016490	ENSPTXG00000016488	PC (ENSPTXG00000016469)	ENSPTXG00000016468	ENSPTXG00000016467	HAPLN2 (ENSPTXG00000016465)	RHBG (ENSPTXG00000016463) #34	MEF2D (ENSPTXG00000016452) #35	IQGAP3 (ENSPTXG00000016444) #36	UBQLN4 (ENSPTXG00000016442) #18	LAMTOR2 (ENSPTXG00000016441) #19	RAB25 (ENSPTXG00000016440) #20	ENSPTXG00000016439	ENSPTXG00000016437	MEX3A (ENSPTXG00000016434) #21	LMNA (ENSPTXG00000016432) #22	ENSPTXG00000016426	ENSPTXG00000016424	ENSPTXG00000016422	ENSPTXG00000016419	CX3CR1 (ENSPTXG00000016417)	VANGL2 (ENSPTXG00000016413)	ENSPTXG00000016411	NHLH1 (ENSPTXG00000016409)	NCSTN (ENSPTXG00000016406)	COPA (ENSPTXG00000015419)	ENSPTXG00000015401	TAF6L (ENSPTXG00000015400)	BANF1 (ENSPTXG00000015398)	ENSPTXG00000015396	EIF1AD (ENSPTXG00000015395)
Mainland tiger snake	MODERN SPECIES	2861																ENSNSUG00000000342 #22
Blue-lipped sea krait	MODERN SPECIES	2119																LMNA (ENSLLTG00000002945) #22
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1846																ENSACAG00000017030 #22
Lizard	MODERN SPECIES	1	ENSACAG00000039006	ENSACAG00000001721	HNRNPK (ENSACAG00000001479)	RMI1 (ENSACAG00000001474)	SLC28A3 (ENSACAG00000001185)	NTRK2 (ENSACAG00000000978)	AGTPBP1 (ENSACAG00000022596)	NAA35 (ENSACAG00000000424)	GOLM1 (ENSACAG00000000371)	ISCA1 (ENSACAG00000038585)	TUT7 (ENSACAG00000000279)	ENSACAG00000042784	ENSACAG00000014320	ENSACAG00000014306	GAS1 (ENSACAG00000014344)	ENSACAG00000013200 #22	ENSACAG00000041193	ENSACAG00000013377	ENSACAG00000013328	FBP2 (ENSACAG00000038303)	FBP1 (ENSACAG00000013243)	ENSACAG00000036791	ENSACAG00000013209	FANCC (ENSACAG00000013146)	ENSACAG00000039829	PTCH1 (ENSACAG00000012983)	ENSACAG00000039786	ENSACAG00000012947	HSD17B3 (ENSACAG00000038601)	SLC35D2 (ENSACAG00000037323)	ZNF367 (ENSACAG00000012929)
Laterata	ANCESTRAL SPECIES	79											ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00940000167298	ENSGT00410000026290.i #27
Argentine black and white tegu	MODERN SPECIES	150	LGALS12 (ENSSMRG00000015858)	PC (ENSSMRG00000015860)	ENSSMRG00000015861	BCAN (ENSSMRG00000015863)	HAPLN2 (ENSSMRG00000015864)	GPATCH4 (ENSSMRG00000015866)	NAXE (ENSSMRG00000015867)	ENSSMRG00000015868	IQGAP3 (ENSSMRG00000015869) #36	MEF2D (ENSSMRG00000017410) #35	UBQLN4 (ENSSMRG00000017524) #18	LAMTOR2 (ENSSMRG00000017526) #19	RAB25 (ENSSMRG00000017527) #20	ENSSMRG00000017528	MEX3A (ENSSMRG00000017529) #21	LMNA (ENSSMRG00000017530) #22	SEMA4A (ENSSMRG00000017533) #23	SLC25A44 (ENSSMRG00000017536) #24	ENSSMRG00000017539	ENSSMRG00000017540 #27	VANGL2 (ENSSMRG00000017543)	ENSSMRG00000017546	NHLH1 (ENSSMRG00000017548)	NCSTN (ENSSMRG00000017550)	COPA (ENSSMRG00000017553)
Common wall lizard	MODERN SPECIES	7	NAXE (ENSPMRG00000017502)	ENSPMRG00000017504	ENSPMRG00000017511	ENSPMRG00000017521	ENSPMRG00000017525	ENSPMRG00000017535	ENSPMRG00000017541	ENSPMRG00000017551	ENSPMRG00000017565	UBQLN4 (ENSPMRG00000017572) #18	LAMTOR2 (ENSPMRG00000017582) #19	RAB25 (ENSPMRG00000017595) #20	ENSPMRG00000017624	ENSPMRG00000017630	MEX3A (ENSPMRG00000017636) #21	LMNA (ENSPMRG00000017646) #22	ENSPMRG00000017660 #23	ENSPMRG00000017669 #23	ENSPMRG00000017683 #23	SLC25A44 (ENSPMRG00000017691) #24	PMF1 (ENSPMRG00000017696) #25	ENSPMRG00000017700	ENSPMRG00000017706	VANGL2 (ENSPMRG00000017711)	ENSPMRG00000017721	NHLH1 (ENSPMRG00000017730)	NCSTN (ENSPMRG00000017736)	COPA (ENSPMRG00000017757)	MEN1 (ENSPMRG00000017785)	ENSPMRG00000017794	ENSPMRG00000017800
tuatara	MODERN SPECIES	1930				ENSSPUG00000004101	ENSSPUG00000004095	RHBG (ENSSPUG00000003411) #34	MEF2D (ENSSPUG00000003141) #35	IQGAP3 (ENSSPUG00000002736) #36	NAXE (ENSSPUG00000002689)	GPATCH4 (ENSSPUG00000002674)	UBQLN4 (ENSSPUG00000002649) #18	LAMTOR2 (ENSSPUG00000002639) #19	RAB25 (ENSSPUG00000002555) #20	ENSSPUG00000002526	MEX3A (ENSSPUG00000002522) #21	LMNA (ENSSPUG00000002510) #22	SEMA4A (ENSSPUG00000002416) #23	SLC25A44 (ENSSPUG00000002391) #24	PMF1 (ENSSPUG00000002356) #25	PAQR6 (ENSSPUG00000002286) #28	SMG5 (ENSSPUG00000002260) #29	TMEM79 (ENSSPUG00000002207) #30	GLMP (ENSSPUG00000002191) #31	CCT3 (ENSSPUG00000002180) #32	SSR2 (ENSSPUG00000002144) #17	ARHGEF2 (ENSSPUG00000002103) #16	ENSSPUG00000002083	PIAS3 (ENSSPUG00000001929)	NUDT17 (ENSSPUG00000001888)	POLR3C (ENSSPUG00000001834)	RNF115 (ENSSPUG00000001822)
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b #15	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Archosauria	ANCESTRAL SPECIES	28	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00510000047412.a #14	ENSGT00940000160132 #13	ENSGT00940000159088 #12	ENSGT00390000016256 #11	ENSGT00530000064067 #10
Aves	ANCESTRAL SPECIES	31	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00510000047412.a #14	ENSGT00940000160132 #13	ENSGT00940000159088 #12	ENSGT00390000016256 #11	ENSGT00530000064067 #10
Neognathae	ANCESTRAL SPECIES	28	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17
Galloanserae	ANCESTRAL SPECIES	36	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000155176	ENSGT00940000157759	ENSGT00940000157585	ENSGT01040000240780	ENSGT00940000157471	ENSGT01030000234515.a.b.a.a
Anatidae	ANCESTRAL SPECIES	81			ENSGT00940000167106	ENSGT00940000157343.g	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463.b #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00960000189418	ENSGT00940000154566 #29	ENSGT00390000018130.a.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610
Pink-footed goose	MODERN SPECIES	362	ENSABRG00000006524	ENSABRG00000006516	ENSABRG00000006508	HAPLN2 (ENSABRG00000006504)	RHBG (ENSABRG00000006501) #34	MEF2D (ENSABRG00000006481) #35	ENSABRG00000006474	IQGAP3 (ENSABRG00000006462) #36	ENSABRG00000006447 #37	ENSABRG00000006441	LAMTOR2 (ENSABRG00000006434) #19	UBQLN4 (ENSABRG00000006418) #18	RAB25 (ENSABRG00000006405) #20	ENSABRG00000006400	MEX3A (ENSABRG00000006394) #21	LMNA (ENSABRG00000006382) #22	SEMA4A (ENSABRG00000006369) #23	SLC25A44 (ENSABRG00000006360) #24	PMF1 (ENSABRG00000006352) #25	ENSABRG00000006348 #27	SMG5 (ENSABRG00000006336) #29	HORMAD1 (ENSABRG00000006294)	GOLPH3L (ENSABRG00000006261)	ENSA (ENSABRG00000006255)	MCL1 (ENSABRG00000006246)
Duck	MODERN SPECIES	17										ENSAPLG00000030819	HAPLN2 (ENSAPLG00000016119)	MEF2D (ENSAPLG00000007271) #35	IQGAP3 (ENSAPLG00000007690) #36	UBQLN4 (ENSAPLG00000009055) #18	MEX3A (ENSAPLG00000009476) #21	LMNA (ENSAPLG00000009487) #22	ENSAPLG00000022171	SMG5 (ENSAPLG00000010263) #29	HORMAD1 (ENSAPLG00000009738)	GOLPH3L (ENSAPLG00000009987)	ENSA (ENSAPLG00000010036)	ENSAPLG00000021823	ENSAPLG00000002706	PRPF3 (ENSAPLG00000002440)	ETV3 (ENSAPLG00000023696)	ENSAPLG00000019128	OTUD7B (ENSAPLG00000004627)	VPS45 (ENSAPLG00000002351)	PLEKHO1 (ENSAPLG00000002526)	ANP32E (ENSAPLG00000002620)	ENSAPLG00000020034
Phasianidae	ANCESTRAL SPECIES	30	ENSGT00940000165753	ENSGT00510000048165	ENSGT00950000182940.b.a.b	ENSGT00870000136537	ENSGT00940000160276	ENSGT00940000159172	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00960000189418	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000010993	ENSGT00950000182900.D	ENSGT00390000000230	ENSGT00390000019377.a	ENSGT00940000159936	ENSGT00940000159186	ENSGT00940000157083	ENSGT00940000161411
Phasianidae_b	ANCESTRAL SPECIES	38	ENSGT00940000165753	ENSGT00510000048165	ENSGT00950000182940.b.a.b	ENSGT00870000136537	ENSGT00940000160276	ENSGT00940000159172	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00950000182907.a.a	ENSGT00530000063760.b	ENSGT00550000075028	ENSGT00440000037582
Chicken	MODERN SPECIES	17	MTMR11 (ENSGALG00010028752)	OTUD7B (ENSGALG00010028750)	ENSGALG00010027297	ENSGALG00010027354	ARHGEF2 (ENSGALG00010027310) #16	IQGAP3 (ENSGALG00010028108) #36	TTC24 (ENSGALG00010028097) #37	ENSGALG00010028094	NAXE (ENSGALG00010028088)	ENSGALG00010028085	UBQLN4 (ENSGALG00010028081) #18	LAMTOR2 (ENSGALG00010028078) #19	RAB25 (ENSGALG00010028075) #20	ENSGALG00010028072	MEX3A (ENSGALG00010028070) #21	ENSGALG00010028066 #22	ENSGALG00010027294	ENSGALG00010027978	ENSGALG00010027300	ANP32E (ENSGALG00010028507)	PLEKHO1 (ENSGALG00010028502)	VPS45 (ENSGALG00010028500)	ENSGALG00010028494	ENSGALG00010028492	NECTIN4 (ENSGALG00010028490)	ARHGAP30 (ENSGALG00010028486)	USF1 (ENSGALG00010028485)	F11R (ENSGALG00010028480)	CASQ1 (ENSGALG00010028479)	PEA15 (ENSGALG00010028478)	ENSGALG00010028476
Japanese quail	MODERN SPECIES	17							ANP32E (ENSCJPG00005013913)	PLEKHO1 (ENSCJPG00005013914)	VPS45 (ENSCJPG00005013915)	ENSCJPG00005013916	UBQLN4 (ENSCJPG00005013917) #18	LAMTOR2 (ENSCJPG00005013918) #19	RAB25 (ENSCJPG00005013919) #20	ENSCJPG00005013920	MEX3A (ENSCJPG00005013921) #21	LMNA (ENSCJPG00005013923) #22	SEMA4A (ENSCJPG00005013924) #23	SLC25A44 (ENSCJPG00005013925) #24	ENSCJPG00005013926	SMG5 (ENSCJPG00005013927) #29	TMEM79 (ENSCJPG00005013928) #30	GLMP (ENSCJPG00005013929) #31	CCT3 (ENSCJPG00005013930) #32	PEX19 (ENSCJPG00005013931)	ENSCJPG00005013932	PEA15 (ENSCJPG00005013933)	CASQ1 (ENSCJPG00005013934)	ENSCJPG00005013966	F11R (ENSCJPG00005013969)	USF1 (ENSCJPG00005013970)	ENSCJPG00005013971
Neognathae_b	ANCESTRAL SPECIES	33	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17
Neognathae_c	ANCESTRAL SPECIES	33	ENSGT00940000153558.a	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b.z #36	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509.c #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT01030000234542.b.a.a.a.b	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324
Golden eagle	MODERN SPECIES	25	ENSACCG00020001921	ENSACCG00020001947	ENSACCG00020001960	BCAN (ENSACCG00020001979)	HAPLN2 (ENSACCG00020002002)	RHBG (ENSACCG00020002042) #34	MEF2D (ENSACCG00020002103) #35	IQGAP3 (ENSACCG00020002188) #36	NAXE (ENSACCG00020002232)	GPATCH4 (ENSACCG00020002248)	UBQLN4 (ENSACCG00020002302) #18	LAMTOR2 (ENSACCG00020002334) #19	RAB25 (ENSACCG00020002353) #20	ENSACCG00020002373	MEX3A (ENSACCG00020002384) #21	LMNA (ENSACCG00020002398) #22	SEMA4A (ENSACCG00020002423) #23	SLC25A44 (ENSACCG00020002449) #24	ENSACCG00020002471	ENSACCG00020002491 #27	PAQR6 (ENSACCG00020002533) #28	SMG5 (ENSACCG00020002562) #29	TMEM79 (ENSACCG00020002589) #30	GLMP (ENSACCG00020002603) #31	CCT3 (ENSACCG00020002624) #32	SSR2 (ENSACCG00020002642) #17	TPM3 (ENSACCG00020002664)	ENSACCG00020002693	C1orf43 (ENSACCG00020008270)	UBAP2L (ENSACCG00020008313)	HAX1 (ENSACCG00020008371)
Kakapo	MODERN SPECIES	60	BCAN (ENSSHBG00005016921)	HAPLN2 (ENSSHBG00005016914)	RHBG (ENSSHBG00005016897) #34	MEF2D (ENSSHBG00005016873) #35	ENSSHBG00005016853 #36	ENSSHBG00005016844	ENSSHBG00005016834 #36	ENSSHBG00005016829	NAXE (ENSSHBG00005016822)	GPATCH4 (ENSSHBG00005016818)	UBQLN4 (ENSSHBG00005016810) #18	LAMTOR2 (ENSSHBG00005016803) #19	RAB25 (ENSSHBG00005016798) #20	ENSSHBG00005016791	MEX3A (ENSSHBG00005016781) #21	LMNA (ENSSHBG00005016768) #22	ENSSHBG00005016763 #23	ENSSHBG00005016749 #23	SLC25A44 (ENSSHBG00005016737) #24	PMF1 (ENSSHBG00005016733) #25	BGLAP (ENSSHBG00005016730) #27	SMG5 (ENSSHBG00005015374) #29	TMEM79 (ENSSHBG00005015292) #30	CCT3 (ENSSHBG00005015253) #32	SSR2 (ENSSHBG00005015244) #17	APH1A (ENSSHBG00005015233)	ENSSHBG00005015053	ENSSHBG00005015032	PRPF3 (ENSSHBG00005015012)	RPRD2 (ENSSHBG00005014997)	ENSSHBG00005014679
Passeriformes	ANCESTRAL SPECIES	37	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT01030000234542.b.a.a.a.b	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000162648	ENSGT00940000160804	ENSGT00940000161919	ENSGT00940000159107
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000154566.i #29	ENSGT00390000002390.b #30	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000162648	ENSGT00940000160804	ENSGT00940000161919
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT00960000189601	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000154566.i #29	ENSGT00390000002390.b #30	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000162648	ENSGT00940000160804	ENSGT00940000161919
Passeroidea	ANCESTRAL SPECIES	28	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000154566.i #29	ENSGT00390000002390.b #30	ENSGT01030000234542.b.a.a.a.b	ENSGT01090000262236	ENSGT01030000234542.b.a.a.b.a.b	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000162648	ENSGT00940000160804	ENSGT00940000161919
Common canary	MODERN SPECIES	81		ENSSCAG00000014510	ENSSCAG00000014506	ENSSCAG00000014502	HAPLN2 (ENSSCAG00000014493)	RHBG (ENSSCAG00000014483) #34	MEF2D (ENSSCAG00000014461) #35	IQGAP3 (ENSSCAG00000013560) #36	NAXE (ENSSCAG00000013155)	ENSSCAG00000013149	UBQLN4 (ENSSCAG00000013141) #18	LAMTOR2 (ENSSCAG00000013138) #19	RAB25 (ENSSCAG00000013131) #20	ENSSCAG00000013124	MEX3A (ENSSCAG00000013118) #21	LMNA (ENSSCAG00000013107) #22	SEMA4A (ENSSCAG00000013096) #23	SLC25A44 (ENSSCAG00000013089) #24	PMF1 (ENSSCAG00000013084) #25	BGLAP (ENSSCAG00000013078) #27	SMG5 (ENSSCAG00000013067) #29	TMEM79 (ENSSCAG00000013060) #30	ENSSCAG00000013039	C1orf43 (ENSSCAG00000013023)	UBAP2L (ENSSCAG00000012983)	HAX1 (ENSSCAG00000012964)	AQP10 (ENSSCAG00000012955)	ATP8B2 (ENSSCAG00000012942)	IL6R (ENSSCAG00000012928)	SHE (ENSSCAG00000012923)	UBE2Q1 (ENSSCAG00000012918)
Zebra finch	MODERN SPECIES	18	ENSTGUG00000022793	ENSTGUG00000026517	BCAN (ENSTGUG00000023506)	HAPLN2 (ENSTGUG00000025869)	RHBG (ENSTGUG00000003473) #34	MEF2D (ENSTGUG00000003481) #35	IQGAP3 (ENSTGUG00000003501) #36	ENSTGUG00000003613	NAXE (ENSTGUG00000003621)	ENSTGUG00000003636	UBQLN4 (ENSTGUG00000003644) #18	LAMTOR2 (ENSTGUG00000003670) #19	RAB25 (ENSTGUG00000003675) #20	ENSTGUG00000003680	MEX3A (ENSTGUG00000003692) #21	LMNA (ENSTGUG00000015888) #22	SEMA4A (ENSTGUG00000003695) #23	ENSTGUG00000018930	SLC25A44 (ENSTGUG00000015885) #24	ENSTGUG00000024980 #25	BGLAP (ENSTGUG00000003747) #27	SMG5 (ENSTGUG00000003748) #29	TMEM79 (ENSTGUG00000022613) #30	TPM3 (ENSTGUG00000003785)	ENSTGUG00000029068	UBAP2L (ENSTGUG00000003834)	HAX1 (ENSTGUG00000003919)	AQP10 (ENSTGUG00000020695)	ATP8B2 (ENSTGUG00000003921)	IL6R (ENSTGUG00000024535)	SHE (ENSTGUG00000004055)
Medium ground finch	MODERN SPECIES	247	ENSGFOG00000010024	ENSGFOG00000010028	ENSGFOG00000010037	BCAN (ENSGFOG00000010058)	HAPLN2 (ENSGFOG00000010066)	RHBG (ENSGFOG00000010070) #34	MEF2D (ENSGFOG00000010083) #35	IQGAP3 (ENSGFOG00000010097) #36	ENSGFOG00000010121 #37	NAXE (ENSGFOG00000010126)	UBQLN4 (ENSGFOG00000010134) #18	LAMTOR2 (ENSGFOG00000010143) #19	RAB25 (ENSGFOG00000010146) #20	ENSGFOG00000010153	MEX3A (ENSGFOG00000010158) #21	LMNA (ENSGFOG00000010161) #22	SEMA4A (ENSGFOG00000010172) #23	SLC25A44 (ENSGFOG00000010182) #24	SMG5 (ENSGFOG00000010189) #29	TMEM79 (ENSGFOG00000010207) #30	TPM3 (ENSGFOG00000010212)	C1orf43 (ENSGFOG00000010231)	UBAP2L (ENSGFOG00000010247)	ENSGFOG00000010280	AQP10 (ENSGFOG00000010284)	ATP8B2 (ENSGFOG00000010292)	IL6R (ENSGFOG00000010325)	SHE (ENSGFOG00000010337)	UBE2Q1 (ENSGFOG00000010349)	CHRNB2 (ENSGFOG00000010362)	ADAR (ENSGFOG00000010376)
Flycatcher	MODERN SPECIES	17	ENSFALG00000003229	ENSFALG00000028936	ENSFALG00000025964	ENSFALG00000003292	ENSFALG00000028856	RHBG (ENSFALG00000003358) #34	MEF2D (ENSFALG00000013606) #35	IQGAP3 (ENSFALG00000002642) #36	ENSFALG00000002636 #37	NAXE (ENSFALG00000002625)	UBQLN4 (ENSFALG00000002609) #18	LAMTOR2 (ENSFALG00000002604) #19	RAB25 (ENSFALG00000002597) #20	ENSFALG00000002594	MEX3A (ENSFALG00000014982) #21	LMNA (ENSFALG00000002586) #22	SEMA4A (ENSFALG00000002573) #23	SLC25A44 (ENSFALG00000002568) #24	PMF1 (ENSFALG00000028987) #25	ENSFALG00000024781 #27	ENSFALG00000002560 #29	ENSFALG00000002555 #17	ENSFALG00000002550 #32	ENSFALG00000024237	ENSFALG00000024658	ENSFALG00000024050	FLAD1 (ENSFALG00000001270)	CKS1B (ENSFALG00000024948)	SHC1 (ENSFALG00000001262)	PYGO2 (ENSFALG00000015227)	PBXIP1 (ENSFALG00000001259)
Great tit	MODERN SPECIES	17	CRABP2 (ENSPMJG00000009888)	ENSPMJG00000009890	ENSPMJG00000009894	ENSPMJG00000009896	BCAN (ENSPMJG00000009899)	HAPLN2 (ENSPMJG00000009900)	RHBG (ENSPMJG00000009901) #34	MEF2D (ENSPMJG00000009914) #35	IQGAP3 (ENSPMJG00000009919) #36	ENSPMJG00000000065 #37	GPATCH4 (ENSPMJG00000000160)	UBQLN4 (ENSPMJG00000000181) #18	RAB25 (ENSPMJG00000000212) #20	ENSPMJG00000000220	MEX3A (ENSPMJG00000000236) #21	LMNA (ENSPMJG00000000245) #22	SEMA4A (ENSPMJG00000000261) #23	SLC25A44 (ENSPMJG00000000271) #24	PMF1 (ENSPMJG00000000278) #25	ENSPMJG00000000280 #27	SMG5 (ENSPMJG00000000283) #29	TMEM79 (ENSPMJG00000000349) #30	TPM3 (ENSPMJG00000000373)	ENSPMJG00000000449	C1orf43 (ENSPMJG00000000460)	UBAP2L (ENSPMJG00000000484)	HAX1 (ENSPMJG00000000564)	AQP10 (ENSPMJG00000000574)	ATP8B2 (ENSPMJG00000000586)	IL6R (ENSPMJG00000000621)	SHE (ENSPMJG00000000635)
African ostrich	MODERN SPECIES	347																LMNA (ENSSCUG00000003819) #22	SLC25A44 (ENSSCUG00000003817) #24	ENSSCUG00000003814	ENSSCUG00000003811 #28	SMG5 (ENSSCUG00000003808) #29	CCT3 (ENSSCUG00000003804) #32	SSR2 (ENSSCUG00000003801) #17	KHDC4 (ENSSCUG00000003793) #14	RIT1 (ENSSCUG00000003792) #13	SYT11 (ENSSCUG00000003791) #12	ENSSCUG00000003718 #11	MSTO1 (ENSSCUG00000003686) #10	DAP3 (ENSSCUG00000003685) #9	ASH1L (ENSSCUG00000003684) #8	ENSSCUG00000003682 #7	FDPS (ENSSCUG00000003679)
Australian saltwater crocodile	MODERN SPECIES	15	ENSCPRG00005007931	ENSCPRG00005007929	BCAN (ENSCPRG00005007910)	HAPLN2 (ENSCPRG00005007895)	RHBG (ENSCPRG00005007888) #34	MEF2D (ENSCPRG00005007870) #35	IQGAP3 (ENSCPRG00005007853) #36	TTC24 (ENSCPRG00005007848) #37	NAXE (ENSCPRG00005007843)	GPATCH4 (ENSCPRG00005007835)	UBQLN4 (ENSCPRG00005007826) #18	LAMTOR2 (ENSCPRG00005007823) #19	RAB25 (ENSCPRG00005007819) #20	ENSCPRG00005007809	MEX3A (ENSCPRG00005007807) #21	LMNA (ENSCPRG00005007803) #22	BGLAP (ENSCPRG00005007799) #27	ENSCPRG00005007797	ENSCPRG00005007796 #28	ENSCPRG00005007795 #28	SMG5 (ENSCPRG00005007786) #29	TMEM79 (ENSCPRG00005007775) #30	GLMP (ENSCPRG00005007771) #31
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00730000111346 #37	ENSGT00390000007227.a	ENSGT00390000008765	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131 #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b #15	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Chinese turtle	MODERN SPECIES	370	CRABP2 (ENSPSIG00000007402)	ENSPSIG00000007701	ENSPSIG00000001994	BCAN (ENSPSIG00000008257)	ENSPSIG00000009263	ENSPSIG00000009383	RHBG (ENSPSIG00000009777) #34	MEF2D (ENSPSIG00000010381) #35	NAXE (ENSPSIG00000010506)	IQGAP3 (ENSPSIG00000010888) #36	TTC24 (ENSPSIG00000010973) #37	GPATCH4 (ENSPSIG00000011317)	UBQLN4 (ENSPSIG00000012561) #18	RAB25 (ENSPSIG00000013051) #20	ENSPSIG00000013143	LMNA (ENSPSIG00000013224) #22	ENSPSIG00000014092	SEMA4A (ENSPSIG00000014103) #23	SLC25A44 (ENSPSIG00000014778) #24	PMF1 (ENSPSIG00000014836) #25	BGLAP (ENSPSIG00000015018) #27	PAQR6 (ENSPSIG00000015029) #28	SMG5 (ENSPSIG00000015198) #29	TMEM79 (ENSPSIG00000015365) #30	GLMP (ENSPSIG00000015712) #31	CCT3 (ENSPSIG00000015722) #32	ENSPSIG00000016401	ENSPSIG00000001047	ENSPSIG00000016408	KLHDC9 (ENSPSIG00000016412)	PFDN2 (ENSPSIG00000016446)
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.a #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b #15	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000163126	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00960000189418	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.a #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b #15	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
Goode s thornscrub tortoise	MODERN SPECIES	16	ENSGEVG00005014250	ENSGEVG00005014272	ENSGEVG00005014294	BCAN (ENSGEVG00005014368)	HAPLN2 (ENSGEVG00005014721)	RHBG (ENSGEVG00005015040) #34	MEF2D (ENSGEVG00005015371) #35	IQGAP3 (ENSGEVG00005015449) #36	NAXE (ENSGEVG00005016400)	GPATCH4 (ENSGEVG00005016428)	UBQLN4 (ENSGEVG00005016451) #18	LAMTOR2 (ENSGEVG00005016481) #19	RAB25 (ENSGEVG00005016498) #20	ENSGEVG00005016590	MEX3A (ENSGEVG00005016649) #21	LMNA (ENSGEVG00005016668) #22	SEMA4A (ENSGEVG00005016697) #23	SLC25A44 (ENSGEVG00005016726) #24	PMF1 (ENSGEVG00005016760) #25	ENSGEVG00005016778	PAQR6 (ENSGEVG00005016803) #28	SMG5 (ENSGEVG00005016873) #29	TMEM79 (ENSGEVG00005016914) #30	GLMP (ENSGEVG00005017028) #31	CCT3 (ENSGEVG00005017052) #32	SSR2 (ENSGEVG00005017086) #17	ARHGEF2 (ENSGEVG00005017131) #16	ENSGEVG00005017171	RXFP4 (ENSGEVG00005017219) #15	ANKRD35 (ENSGEVG00005017285)	PIAS3 (ENSGEVG00005017589)
Abingdon island giant tortoise	MODERN SPECIES	1671	ENSCABG00000017759	ENSCABG00000017765	HAPLN2 (ENSCABG00000017810)	RHBG (ENSCABG00000017984) #34	MEF2D (ENSCABG00000017991) #35	IQGAP3 (ENSCABG00000018011) #36	NAXE (ENSCABG00000018099)	ENSCABG00000018102	ENSCABG00000018117	UBQLN4 (ENSCABG00000018121) #18	LAMTOR2 (ENSCABG00000018126) #19	RAB25 (ENSCABG00000018130) #20	ENSCABG00000018133	ENSCABG00000018135	MEX3A (ENSCABG00000018137) #21	LMNA (ENSCABG00000018140) #22	SEMA4A (ENSCABG00000018143) #23	SLC25A44 (ENSCABG00000018148) #24	PMF1 (ENSCABG00000018150) #25	ENSCABG00000018151 #28	ENSCABG00000018152 #28	SMG5 (ENSCABG00000018154) #29	TMEM79 (ENSCABG00000018156) #30	ENSCABG00000018157 #31	ENSCABG00000018158 #31	CCT3 (ENSCABG00000018159) #32	SSR2 (ENSCABG00000018160) #17	ARHGEF2 (ENSCABG00000018164) #16	ENSCABG00000018294	RXFP4 (ENSCABG00000018295) #15	ENSCABG00000018296
Emydidae	DUPLICATION
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000157244.g #22
Three-toed box turtle	MODERN SPECIES	2994																ENSTMTG00000018887 #22
Emydidae	DUPLICATION
Emydidae	DUPLICATION
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000157244.h.a.a #22
painted turtle	MODERN SPECIES	1883																ENSCPBG00000011091 #22
Three-toed box turtle	MODERN SPECIES	1691																ENSTMTG00000020139 #22
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000157244.h.a.b #22
painted turtle	MODERN SPECIES	1741																ENSCPBG00000003754 #22
Emydidae	ANCESTRAL SPECIES	18	ENSGT00940000157619	ENSGT00940000153558.a	ENSGT00940000167106	ENSGT00940000157343	ENSGT00940000161384	ENSGT00950000182844.b.b.a #34	ENSGT00940000159463 #35	ENSGT00950000183076.a.b.b.a.b #36	ENSGT00390000007227.a	ENSGT00390000008765.n	ENSGT00940000155620 #18	ENSGT00390000006100 #19	ENSGT00940000158230 #20	ENSGT00940000165149	ENSGT00940000161732 #21	ENSGT00940000157244.h.b #22	ENSGT00940000161509 #23	ENSGT00940000155399 #24	ENSGT00940000162656 #25	ENSGT00410000026290.i #27	ENSGT00940000160567 #28	ENSGT00940000154566 #29	ENSGT00390000002390.b #30	ENSGT00390000005131.a #31	ENSGT00570000079224 #32	ENSGT00390000005125 #17	ENSGT00940000158341 #16	ENSGT01030000234534.B.a.a.b #15	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847
painted turtle	MODERN SPECIES	785	KHDC4 (ENSCPBG00000025715) #14	RIT1 (ENSCPBG00000025719) #13	SYT11 (ENSCPBG00000025720) #12	ENSCPBG00000025730 #11	MSTO1 (ENSCPBG00000025784) #10	DAP3 (ENSCPBG00000025787) #9	ENSCPBG00000025790 #8	IQGAP3 (ENSCPBG00000025794) #36	NAXE (ENSCPBG00000025800)	GPATCH4 (ENSCPBG00000025803)	UBQLN4 (ENSCPBG00000025810) #18	LAMTOR2 (ENSCPBG00000025814) #19	RAB25 (ENSCPBG00000025817) #20	ENSCPBG00000025819	MEX3A (ENSCPBG00000025821) #21	ENSCPBG00000025823 #22	SEMA4A (ENSCPBG00000025830) #23	SLC25A44 (ENSCPBG00000025837) #24	PMF1 (ENSCPBG00000025840) #25	BGLAP (ENSCPBG00000025842) #27	PAQR6 (ENSCPBG00000025845) #28	SMG5 (ENSCPBG00000025848) #29	TMEM79 (ENSCPBG00000025854) #30	GLMP (ENSCPBG00000025860) #31	CCT3 (ENSCPBG00000025861) #32	SSR2 (ENSCPBG00000025864) #17	ARHGEF2 (ENSCPBG00000025867) #16	ENSCPBG00000025870
Anura	ANCESTRAL SPECIES	302										ENSGT01070000257261	ENSGT00390000008714.a	ENSGT00550000075099	ENSGT00390000009272	ENSGT00390000011582	ENSGT00940000161732 #21	ENSGT00940000157244 #22	ENSGT00940000161509 #23
Frog	MODERN SPECIES	8	c1orf43 (ENSXETG00000020733)	ubap2l (ENSXETG00000015342)	ENSXETG00000003406	ENSXETG00000032437	ENSXETG00000033258	ENSXETG00000041624	ENSXETG00000049031	hax1 (ENSXETG00000030686)	ENSXETG00000041583	ENSXETG00000041733	nit1 (ENSXETG00000012699)	pfdn2 (ENSXETG00000040839)	klhdc9 (ENSXETG00000012703)	mex3a (ENSXETG00000012704) #21	ENSXETG00000043762	lmna (ENSXETG00000024161) #22	ENSXETG00000048424	sema4a (ENSXETG00000018164) #23	ENSXETG00000042509	ENSXETG00000039965	ufc1 (ENSXETG00000017667)	usp21 (ENSXETG00000017669)	b4galt3 (ENSXETG00000042843)	ENSXETG00000034513	ppox (ENSXETG00000017673)	ENSXETG00000044288	dnz1 (ENSXETG00000036687)	adamts4 (ENSXETG00000017676)	ENSXETG00000045055	ENSXETG00000047100	ndufs2 (ENSXETG00000025925)
Leishan spiny toad	MODERN SPECIES	4	B4GALT3 (ENSLLEG00000016905)	PPOX (ENSLLEG00000016330)	ENSLLEG00000016146	ENSLLEG00000016119	ADAMTS4 (ENSLLEG00000016043)	NDUFS2 (ENSLLEG00000015940)	ENSLLEG00000015883	DEDD (ENSLLEG00000015831)	NIT1 (ENSLLEG00000015737)	PFDN2 (ENSLLEG00000015547)	KLHDC9 (ENSLLEG00000015496)	MEX3A (ENSLLEG00000015368) #21	ENSLLEG00000015289	ENSLLEG00000015252	ENSLLEG00000015219	LMNA (ENSLLEG00000024512) #22	ENSLLEG00000024433	SEMA4A (ENSLLEG00000024301) #23	ENSLLEG00000024273	KCNN3 (ENSLLEG00000024129)	ENSLLEG00000024069	ADAR (ENSLLEG00000022684)	CHRNB2 (ENSLLEG00000022363)	ENSLLEG00000022295	SHE (ENSLLEG00000022092)	ENSLLEG00000022061	IL6R (ENSLLEG00000021954)	AQP10 (ENSLLEG00000021832)	HAX1 (ENSLLEG00000021641)	C1orf43 (ENSLLEG00000021373)	UBAP2L (ENSLLEG00000020043)
Coelacanth	MODERN SPECIES	815				rhbg (ENSLACG00000001771) #34	hapln2 (ENSLACG00000004507)	bcan (ENSLACG00000005636)	IQGAP3 (ENSLACG00000007771) #36	TTC24 (ENSLACG00000009122) #37	NAXE (ENSLACG00000009488)	GPATCH4 (ENSLACG00000009700)	UBQLN4 (ENSLACG00000010468) #18	LAMTOR2 (ENSLACG00000010926) #19	RAB25 (ENSLACG00000011157) #20	rab11al (ENSLACG00000011380)	MEX3A (ENSLACG00000011943) #21	LMNA (ENSLACG00000012778) #22	ENSLACG00000013812	SLC25A44 (ENSLACG00000014139) #24	PMF1 (ENSLACG00000014303) #25	ENSLACG00000014491
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000157244 #22
Reedfish	MODERN SPECIES	69														ENSECRG00000016640	ENSECRG00000016671	lmna (ENSECRG00000016719) #22	ENSECRG00000016771
Neopterygii	ANCESTRAL SPECIES	85	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000008152.B.b	ENSGT00950000183129.a	ENSGT00940000156969	ENSGT00940000159637	ENSGT00940000160717	ENSGT00530000062962.b.a	ENSGT00390000009486	ENSGT01030000234532.B.e.b.f	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244 #22	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764	ENSGT00940000153487.b.b	ENSGT00390000018145	ENSGT00390000013696	ENSGT00940000157369	ENSGT00940000153499.b.b.d	ENSGT00390000007218	ENSGT00390000008908	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b	ENSGT00940000157859
Spotted gar	MODERN SPECIES	663	rpz2 (ENSLOCG00000017690)	ENSLOCG00000017689	ENSLOCG00000017688	ENSLOCG00000017687	rpz6 (ENSLOCG00000017686)	rpz5 (ENSLOCG00000017685)	rpz4 (ENSLOCG00000017684)	tmem176l.4 (ENSLOCG00000008935)	ENSLOCG00000008923	zgc:174938 (ENSLOCG00000008906)	UBQLN4 (ENSLOCG00000008897) #18	lamtor2 (ENSLOCG00000008891) #19	rab25a (ENSLOCG00000008881) #20	rab11al (ENSLOCG00000008865)	ENSLOCG00000008857	lmna (ENSLOCG00000008848) #22	ENSLOCG00000008831	gpatch4 (ENSLOCG00000008820)	naxe (ENSLOCG00000008812)	DENND4B (ENSLOCG00000008793)	si:dkey-6i22.5 (ENSLOCG00000008782) #25	ENSLOCG00000008768	gnrhr1 (ENSLOCG00000008760)	ENSLOCG00000008748 #37	iqgap3 (ENSLOCG00000008716) #36	gatad2b (ENSLOCG00000008705)	ENSLOCG00000008695	SLC39A1 (ENSLOCG00000008689)	ENSLOCG00000008669	CREB3L4 (ENSLOCG00000008658)	lsm6 (ENSLOCG00000017683)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000157244.a.a #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000157244.a.a #22
Euteleosteomorpha	ANCESTRAL SPECIES	245	ENSGT00950000182929.B.b.a	ENSGT00940000175701	ENSGT00950000182929.B.a.b	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b
Acanthomorphata	ANCESTRAL SPECIES	70	ENSGT00950000182929.B.b.a	ENSGT00940000175701	ENSGT00950000182929.B.a.b	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00940000171486.B	ENSGT00940000159356.a.b
Euacanthomorphacea	ANCESTRAL SPECIES	24	ENSGT00950000182929.B.b.a	ENSGT00940000175701	ENSGT00950000182929.B.a.b	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00950000182929.B.b.a	ENSGT00940000175701	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Tetraodontidae	ANCESTRAL SPECIES	43	ENSGT00940000156213.r	ENSGT00940000156213.q.b	ENSGT00530000064067 #10	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k
Fugu	MODERN SPECIES	3	srsf4 (ENSTRUG00000011891)	msto1 (ENSTRUG00000022956) #10	apoe1 (ENSTRUG00000011954)	apoa-iv1 (ENSTRUG00000012268)	tomm40l (ENSTRUG00000022433)	ENSTRUG00000012432	ENSTRUG00000021411	lipea (ENSTRUG00000012533)	slc9a3.2 (ENSTRUG00000012590)	olah (ENSTRUG00000012710)	ago3b (ENSTRUG00000012737)	si:dkey-211g8.6 (ENSTRUG00000012836)	ENSTRUG00000025651	tekt2 (ENSTRUG00000012877)	usf2 (ENSTRUG00000012954)	LMNA (ENSTRUG00000013047) #22	naxe (ENSTRUG00000013227)	scn1bb (ENSTRUG00000033204)	ENSTRUG00000013323	ENSTRUG00000022038	rps18 (ENSTRUG00000013398)	VPS52 (ENSTRUG00000013440)	ENSTRUG00000013516	ENSTRUG00000025970	ANKMY2 (ENSTRUG00000013555)	si:dkey-81h8.1 (ENSTRUG00000022808)	abcf1 (ENSTRUG00000033233)	ENSTRUG00000013611	ARHGEF2 (ENSTRUG00000030026) #16	arhgef1a (ENSTRUG00000013689) #16	ENSTRUG00000032103
Tetraodon	MODERN SPECIES	26	kmo (ENSTNIG00000002664)	ENSTNIG00000002663	suclg1 (ENSTNIG00000002648)	CHD7 (ENSTNIG00000002647)	kiaa0232 (ENSTNIG00000002642)	ENSTNIG00000002641	ENSTNIG00000002640	tyro3 (ENSTNIG00000002639)	cfdp1 (ENSTNIG00000002638)	slc9a3.2 (ENSTNIG00000002637)	olah (ENSTNIG00000002636)	AGO3 (ENSTNIG00000002635)	ENSTNIG00000002634	tekt2 (ENSTNIG00000019548)	usf2 (ENSTNIG00000002633)	LMNA (ENSTNIG00000002632) #22	scn1bb (ENSTNIG00000002631)	ENSTNIG00000002630	NT5C3B (ENSTNIG00000002615)	FKBP10 (ENSTNIG00000002614)	p3h4 (ENSTNIG00000002613)	ENSTNIG00000002612	ENSTNIG00000000161	ENSTNIG00000002610	ENSTNIG00000002609	g2e3 (ENSTNIG00000002608)	strn3 (ENSTNIG00000002607)	ap4s1 (ENSTNIG00000002606)	hectd1 (ENSTNIG00000002605)	HEATR5A (ENSTNIG00000002604)	hikeshi (ENSTNIG00000002603)
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Ballan wrasse	MODERN SPECIES	178	msto1 (ENSLBEG00000017083) #10	ENSLBEG00000017038	apoa4a (ENSLBEG00000017006)	ENSLBEG00000016983	tomm40l (ENSLBEG00000016955)	ENSLBEG00000016890	lipea (ENSLBEG00000016855)	ENSLBEG00000016376	ENSLBEG00000016249	SLC9A3 (ENSLBEG00000016187)	olah (ENSLBEG00000016120)	ago3b (ENSLBEG00000016073)	si:dkey-211g8.6 (ENSLBEG00000016040)	tekt2 (ENSLBEG00000016002)	usf2 (ENSLBEG00000015976)	LMNA (ENSLBEG00000015926) #22	naxe (ENSLBEG00000015876)	scn1bb (ENSLBEG00000015844)	ENSLBEG00000015821	ENSLBEG00000015792	GALR1 (ENSLBEG00000015770)	sall3b (ENSLBEG00000015706)	atp9b (ENSLBEG00000015495)	nfatc1 (ENSLBEG00000015431)	ENSLBEG00000015398	slc52a2 (ENSLBEG00000015392)	ENSLBEG00000015378	ENSLBEG00000015312	ENSLBEG00000015274
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Perciformes	ANCESTRAL SPECIES	11	ENSGT00530000064067 #10	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000171486.B	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00530000064067 #10	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a
Pike perch	MODERN SPECIES	13	msto1 (ENSSLUG00000002049) #10	ENSSLUG00000001981	apoa4a (ENSSLUG00000001940)	ENSSLUG00000001935	tomm40l (ENSSLUG00000001923)	ENSSLUG00000001875	lipea (ENSSLUG00000001833)	ENSSLUG00000001822	slc9a3.2 (ENSSLUG00000001676)	olah (ENSSLUG00000001527)	ago3b (ENSSLUG00000000884)	si:dkey-211g8.6 (ENSSLUG00000000704)	ENSSLUG00000000700	tekt2 (ENSSLUG00000000692)	usf2 (ENSSLUG00000000684)	LMNA (ENSSLUG00000000564) #22	naxe (ENSSLUG00000000525)	scn1bb (ENSSLUG00000000513)	ENSSLUG00000000508	ENSSLUG00000000505	ENSSLUG00000000498	ENSSLUG00000000487	sall3b (ENSSLUG00000000481)	atp9b (ENSSLUG00000000303)	nfatc1 (ENSSLUG00000000146)	ENSSLUG00000000124	slc52a2 (ENSSLUG00000000114)	ENSSLUG00000000110	ENSSLUG00000000105	ENSSLUG00000024443	ENSSLUG00000024436
Channel bull blenny	MODERN SPECIES	2	srsf4 (ENSCGOG00000020292)	msto1 (ENSCGOG00000020289) #10	ENSCGOG00000020282	apoa4a (ENSCGOG00000020227)	apoa4a (ENSCGOG00000020226)	tomm40l (ENSCGOG00000020166)	ENSCGOG00000019756	ENSCGOG00000019739	lipea (ENSCGOG00000019709)	slc9a3.2 (ENSCGOG00000019701)	olah (ENSCGOG00000019695)	ago3b (ENSCGOG00000016219)	si:dkey-211g8.6 (ENSCGOG00000016092)	tekt2 (ENSCGOG00000016029)	usf2 (ENSCGOG00000015992)	LMNA (ENSCGOG00000015642) #22	naxe (ENSCGOG00000015617)	scn1bb (ENSCGOG00000015615)	ENSCGOG00000015614	ENSCGOG00000015608	ENSCGOG00000015607	ENSCGOG00000015605	sall3b (ENSCGOG00000015577)	atp9b (ENSCGOG00000013135)	nfatc1 (ENSCGOG00000012972)	ENSCGOG00000012939	ENSCGOG00000012934	ENSCGOG00000012910	ENSCGOG00000012882	ENSCGOG00000012847	ENSCGOG00000012839
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00940000156213.r	ENSGT00530000064067 #10	ENSGT00940000165835.b	ENSGT00390000003308.a.b	ENSGT00950000182929.B.a.b.d	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.b.a	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000171486.B	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a
Lumpfish	MODERN SPECIES	2	xkr8.3 (ENSCLMG00005020889)	srsf4 (ENSCLMG00005020887)	msto1 (ENSCLMG00005020886) #10	ENSCLMG00005020871	tomm40l (ENSCLMG00005020857)	ENSCLMG00005020856	apoa4a (ENSCLMG00005020850)	apoea (ENSCLMG00005020828)	lipea (ENSCLMG00005020825)	slc9a3.2 (ENSCLMG00005019798)	olah (ENSCLMG00005019788)	ago3b (ENSCLMG00005016434)	si:dkey-211g8.6 (ENSCLMG00005016401)	tekt2 (ENSCLMG00005016393)	usf2 (ENSCLMG00005016391)	LMNA (ENSCLMG00005016386) #22	naxe (ENSCLMG00005016385)	scn1bb (ENSCLMG00005016383)	ENSCLMG00005016381	ENSCLMG00005016378	ENSCLMG00005016377	sall3b (ENSCLMG00005016375)	atp9b (ENSCLMG00005008794)	nfatc1 (ENSCLMG00005008742)	ENSCLMG00005008714	slc52a2 (ENSCLMG00005008713)	ENSCLMG00005008712	ENSCLMG00005008711	ENSCLMG00005008709	ENSCLMG00005008708	ENSCLMG00005008701
Stickleback	MODERN SPECIES	9	srsf4 (ENSGACG00000002389)	msto1 (ENSGACG00000002391) #10	ENSGACG00000002413	tomm40l (ENSGACG00000002417)	apoa4a (ENSGACG00000002429)	ENSGACG00000002431	apoea (ENSGACG00000002433)	lipea (ENSGACG00000002442)	slc9a3.2 (ENSGACG00000002446)	olah (ENSGACG00000002451)	ago3b (ENSGACG00000002455)	si:dkey-211g8.6 (ENSGACG00000002467)	ENSGACG00000002471	tekt2 (ENSGACG00000002474)	usf2 (ENSGACG00000002481)	LMNA (ENSGACG00000002484) #22	naxe (ENSGACG00000002488)	scn1bb (ENSGACG00000002503)	ENSGACG00000002516	ENSGACG00000002525	GALR1 (ENSGACG00000002526)	sall3b (ENSGACG00000002533)	atp9b (ENSGACG00000002539)	nfatc1 (ENSGACG00000002545)	ENSGACG00000002548	slc52a2 (ENSGACG00000002556)	ENSGACG00000002562	ENSGACG00000002563	pleca (ENSGACG00000002566)	trhrb (ENSGACG00000002573)	nudcd1 (ENSGACG00000002575)
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
European seabass	MODERN SPECIES	22	ENSDLAG00005006137 #10	ENSDLAG00005006168	apoa4a (ENSDLAG00005006202)	ENSDLAG00005006218	tomm40l (ENSDLAG00005006233)	ENSDLAG00005006300	ENSDLAG00005006393	ENSDLAG00005006460	ENSDLAG00005006400	slc9a3.2 (ENSDLAG00005006534)	ENSDLAG00005034018	ENSDLAG00005001704	si:dkey-211g8.6 (ENSDLAG00005030137)	ENSDLAG00005008672	tekt2 (ENSDLAG00005030694)	ENSDLAG00005008746 #22	ENSDLAG00005009408	ENSDLAG00005009424	ENSDLAG00005009439	ENSDLAG00005009446	ENSDLAG00005009459	sall3b (ENSDLAG00005009469)	nfatc1 (ENSDLAG00005010540)	ENSDLAG00005010576	ENSDLAG00005010578	ENSDLAG00005027821	ENSDLAG00005028652	pleca (ENSDLAG00005010626)	eif3eb (ENSDLAG00005011074)	TMEM74 (ENSDLAG00005011213)	trhrb (ENSDLAG00005011218)
Large yellow croaker	MODERN SPECIES	484	srsf4 (ENSLCRG00005019641)	msto1 (ENSLCRG00005019613) #10	ENSLCRG00005019576	apoa4a (ENSLCRG00005019558)	ENSLCRG00005019550	tomm40l (ENSLCRG00005019526)	ENSLCRG00005019467	ENSLCRG00005019458	lipea (ENSLCRG00005019433)	slc9a3.2 (ENSLCRG00005018001)	olah (ENSLCRG00005017802)	ago3b (ENSLCRG00005013061)	si:dkey-211g8.6 (ENSLCRG00005012715)	tekt2 (ENSLCRG00005012710)	usf2 (ENSLCRG00005012685)	LMNA (ENSLCRG00005012645) #22	naxe (ENSLCRG00005012624)	scn1bb (ENSLCRG00005012615)	ENSLCRG00005012611	ENSLCRG00005012605	GALR1 (ENSLCRG00005012600)	sall3b (ENSLCRG00005012595)	atp9b (ENSLCRG00005005204)	nfatc1 (ENSLCRG00005004709)	ENSLCRG00005004701	slc52a2 (ENSLCRG00005004699)	ENSLCRG00005004696	ENSLCRG00005004687	ENSLCRG00005004673	sacm1la (ENSLCRG00005004533)	ENSLCRG00005004512
Gilthead seabream	MODERN SPECIES	17	apoea (ENSSAUG00010027483)	apoa4a (ENSSAUG00010027482)	ENSSAUG00010027481	ENSSAUG00010027480	tomm40l (ENSSAUG00010027478)	ENSSAUG00010027472	ENSSAUG00010027464	lipea (ENSSAUG00010027461)	slc9a3.2 (ENSSAUG00010027448)	olah (ENSSAUG00010027447)	ago3b (ENSSAUG00010027191)	si:dkey-211g8.6 (ENSSAUG00010027148)	ENSSAUG00010027147	tekt2 (ENSSAUG00010027146)	usf2 (ENSSAUG00010027142)	LMNA (ENSSAUG00010027139) #22	naxe (ENSSAUG00010027137)	scn1bb (ENSSAUG00010027136)	ENSSAUG00010027135	ENSSAUG00010027132	GALR1 (ENSSAUG00010027129)	sall3b (ENSSAUG00010027127)	atp9b (ENSSAUG00010026686)	nfatc1 (ENSSAUG00010026664)	ENSSAUG00010026660	slc52a2 (ENSSAUG00010026659)	ENSSAUG00010026658	ENSSAUG00010026656	EPPK1 (ENSSAUG00010026653)	ENSSAUG00010026652	ENSSAUG00010026648
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00940000156213.q.b	ENSGT00530000064067 #10	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00940000156213.q.a	ENSGT00940000156213.q.b	ENSGT00530000064067 #10	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	2	msto1 (ENSBSLG00000002428) #10	ENSBSLG00000002456	ENSBSLG00000002482	apoa4a (ENSBSLG00000002493)	tomm40l (ENSBSLG00000002529)	ENSBSLG00000002632	lipea (ENSBSLG00000002826)	ENSBSLG00000002847	slc9a3.2 (ENSBSLG00000002899)	olah (ENSBSLG00000003084)	ago3b (ENSBSLG00000004201)	si:dkey-211g8.6 (ENSBSLG00000006022)	tekt2 (ENSBSLG00000006024)	usf2 (ENSBSLG00000006035)	LMNA (ENSBSLG00000006061) #22	LMNA (ENSBSLG00000006067) #22	naxe (ENSBSLG00000006118)	scn1bb (ENSBSLG00000006126)	ENSBSLG00000006199	sall3b (ENSBSLG00000006411)	atp9b (ENSBSLG00000007034)	nfatc1 (ENSBSLG00000010123)	ENSBSLG00000010616	slc52a2 (ENSBSLG00000010690)	ENSBSLG00000010831	ENSBSLG00000010859	ENSBSLG00000010882	pleca (ENSBSLG00000011095)	eif3eb (ENSBSLG00000016107)	TMEM74 (ENSBSLG00000016154)	nudcd1 (ENSBSLG00000016163)
Siamese fighting fish	MODERN SPECIES	2	srsf4 (ENSBSLG00000002398)	msto1 (ENSBSLG00000002428) #10	ENSBSLG00000002456	ENSBSLG00000002482	apoa4a (ENSBSLG00000002493)	tomm40l (ENSBSLG00000002529)	ENSBSLG00000002632	lipea (ENSBSLG00000002826)	ENSBSLG00000002847	slc9a3.2 (ENSBSLG00000002899)	olah (ENSBSLG00000003084)	ago3b (ENSBSLG00000004201)	si:dkey-211g8.6 (ENSBSLG00000006022)	tekt2 (ENSBSLG00000006024)	usf2 (ENSBSLG00000006035)	LMNA (ENSBSLG00000006061) #22	LMNA (ENSBSLG00000006067) #22	naxe (ENSBSLG00000006118)	scn1bb (ENSBSLG00000006126)	ENSBSLG00000006199	sall3b (ENSBSLG00000006411)	atp9b (ENSBSLG00000007034)	nfatc1 (ENSBSLG00000010123)	ENSBSLG00000010616	slc52a2 (ENSBSLG00000010690)	ENSBSLG00000010831	ENSBSLG00000010859	ENSBSLG00000010882	pleca (ENSBSLG00000011095)	eif3eb (ENSBSLG00000016107)	TMEM74 (ENSBSLG00000016154)
Climbing perch	MODERN SPECIES	2	ENSATEG00000005668 #10	ENSATEG00000005594	ENSATEG00000027888	apoa4a (ENSATEG00000005588)	ENSATEG00000005521	tomm40l (ENSATEG00000005466)	ENSATEG00000005424	ENSATEG00000027533	ENSATEG00000005377	slc9a3.2 (ENSATEG00000005243)	olah (ENSATEG00000005343)	ago3b (ENSATEG00000005160)	ENSATEG00000005141	ENSATEG00000005091	ENSATEG00000005047	ENSATEG00000005006 #22	ENSATEG00000004994	ENSATEG00000026960	ENSATEG00000004961	ENSATEG00000028020	GALR1 (ENSATEG00000004923)	atp9b (ENSATEG00000004777)	nfatc1 (ENSATEG00000004729)	ENSATEG00000004677	slc52a2 (ENSATEG00000004670)	ENSATEG00000004657	ENSATEG00000004562	ENSATEG00000026244	ENSATEG00000004531	ENSATEG00000004509	ENSATEG00000004493
Zig-zag eel	MODERN SPECIES	2	ENSMAMG00000026931	ENSMAMG00000005490 #10	ENSMAMG00000026756	ENSMAMG00000005521	ENSMAMG00000024889	tomm40l (ENSMAMG00000005540)	ENSMAMG00000005559	ENSMAMG00000005609	slc9a3.2 (ENSMAMG00000005643)	ENSMAMG00000025308	ENSMAMG00000024599	si:dkey-211g8.6 (ENSMAMG00000005738)	ENSMAMG00000005751	tekt2 (ENSMAMG00000005753)	ENSMAMG00000005763	ENSMAMG00000005802 #22	ENSMAMG00000005843	ENSMAMG00000005858	ENSMAMG00000024585	ENSMAMG00000006061	GALR1 (ENSMAMG00000006080)	atp9b (ENSMAMG00000006147)	ENSMAMG00000006101	nfatc1 (ENSMAMG00000006290)	ENSMAMG00000006320	slc52a2 (ENSMAMG00000006323)	ENSMAMG00000006330	ENSMAMG00000006345	ENSMAMG00000006390	pleca (ENSMAMG00000006415)	eif3eb (ENSMAMG00000006687)
Carangaria	ANCESTRAL SPECIES	14	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT01100000265088	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Seriola	ANCESTRAL SPECIES	55	ENSGT00520000055635.c.b.a	ENSGT00940000159960.c	ENSGT00940000157292.fc.a	ENSGT00940000160115.a.b	ENSGT00940000177056.b	ENSGT00940000165134.a.a	ENSGT00940000165364.a.b	ENSGT00390000015391	ENSGT00390000005284.a	ENSGT00940000154370.c.a	ENSGT00560000077232.A.b	ENSGT00940000156904.a.a	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Yellowtail amberjack	MODERN SPECIES	3241	gsk3aa (ENSSLDG00000017654)	ENSSLDG00000017610	erf (ENSSLDG00000017593)	POU2F2 (ENSSLDG00000017542)	ENSSLDG00000017514	atp1a3a (ENSSLDG00000017447)	pvrl2l (ENSSLDG00000017428)	ENSSLDG00000017372	ENSSLDG00000017350	ENSSLDG00000017289	FLOT1 (ENSSLDG00000017227)	znf384a (ENSSLDG00000017138)	ENSSLDG00000017105	tekt2 (ENSSLDG00000017055)	usf2 (ENSSLDG00000016996)	LMNA (ENSSLDG00000016949) #22	naxe (ENSSLDG00000016929)	scn1bb (ENSSLDG00000016906)	ENSSLDG00000016884	ENSSLDG00000016825	GALR1 (ENSSLDG00000016814)	sall3b (ENSSLDG00000016800)	atp9b (ENSSLDG00000016572)	nfatc1 (ENSSLDG00000016504)	ENSSLDG00000016492	slc52a2 (ENSSLDG00000016480)	ENSSLDG00000016462	ENSSLDG00000016411	ENSSLDG00000016384	ENSSLDG00000016372	pleca (ENSSLDG00000016297)
Greater amberjack	MODERN SPECIES	32	gsk3aa (ENSSDUG00000009791)	ENSSDUG00000009813	erf (ENSSDUG00000009866)	POU2F2 (ENSSDUG00000009887)	atp1a3a (ENSSDUG00000009951)	ENSSDUG00000010047	pvrl2l (ENSSDUG00000010073)	ENSSDUG00000010121	ENSSDUG00000010137	ENSSDUG00000010165	FLOT1 (ENSSDUG00000010195)	znf384a (ENSSDUG00000010249)	ENSSDUG00000010271	tekt2 (ENSSDUG00000010281)	usf2 (ENSSDUG00000010364)	LMNA (ENSSDUG00000010404) #22	naxe (ENSSDUG00000010499)	scn1bb (ENSSDUG00000010514)	ENSSDUG00000010529	ENSSDUG00000010557	GALR1 (ENSSDUG00000010567)	sall3b (ENSSDUG00000010584)	atp9b (ENSSDUG00000010623)	nfatc1 (ENSSDUG00000010801)	ENSSDUG00000010825	ENSSDUG00000010847	slc52a2 (ENSSDUG00000010873)	ENSSDUG00000010885	ENSSDUG00000010895	ENSSDUG00000010953	ENSSDUG00000010964
Barramundi perch	MODERN SPECIES	26	msto1 (ENSLCAG00010017325) #10	apoea (ENSLCAG00010017322)	apoa4a (ENSLCAG00010017320)	apoa4a (ENSLCAG00010017312)	ENSLCAG00010017306	tomm40l (ENSLCAG00010017297)	ENSLCAG00010017288	lipea (ENSLCAG00010017282)	slc9a3.2 (ENSLCAG00010017274)	olah (ENSLCAG00010017260)	ago3b (ENSLCAG00010016161)	si:dkey-211g8.6 (ENSLCAG00010015912)	ENSLCAG00010015908	tekt2 (ENSLCAG00010015886)	usf2 (ENSLCAG00010015833)	LMNA (ENSLCAG00010015704) #22	naxe (ENSLCAG00010015675)	scn1bb (ENSLCAG00010015671)	ENSLCAG00010015667	ENSLCAG00010015663	GALR1 (ENSLCAG00010015658)	sall3b (ENSLCAG00010015656)	atp9b (ENSLCAG00010014357)	nfatc1 (ENSLCAG00010014051)	ENSLCAG00010014036	slc52a2 (ENSLCAG00010014035)	ENSLCAG00010014033	ENSLCAG00010014031	ENSLCAG00010014024	ENSLCAG00010014021	ENSLCAG00010014020
Pleuronectoidei	ANCESTRAL SPECIES	33	ENSGT00530000064067 #10	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00990000204044	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a
Turbot	MODERN SPECIES	14	nelfe (ENSSMAG00000020170)	zbtb12.2 (ENSSMAG00000024236)	ENSSMAG00000020152	zdhhc3b (ENSSMAG00000020136)	ENSSMAG00000030367	OSBPL10 (ENSSMAG00000020123)	ENSSMAG00000020105	TGFBR2 (ENSSMAG00000020096)	ENSSMAG00000020065	ENSSMAG00000019959	ENSSMAG00000019890	ENSSMAG00000019879	ENSSMAG00000024060	ENSSMAG00000019873	ENSSMAG00000019853	ENSSMAG00000019832 #22	ENSSMAG00000034215	ENSSMAG00000019818	ENSSMAG00000019810	ENSSMAG00000019797	GALR1 (ENSSMAG00000019779)	atp9b (ENSSMAG00000019670)	nfatc1 (ENSSMAG00000019637)	ENSSMAG00000019634	slc52a2 (ENSSMAG00000019620)	ENSSMAG00000019614	ENSSMAG00000019596	ENSSMAG00000037956	pleca (ENSSMAG00000019256)	eif3eb (ENSSMAG00000019198)	TMEM74 (ENSSMAG00000029795)
Tongue sole	MODERN SPECIES	9	srsf4 (ENSCSEG00000010058)	msto1 (ENSCSEG00000009998) #10	apoea (ENSCSEG00000009984)	apoa4a (ENSCSEG00000009977)	ENSCSEG00000009969	tomm40l (ENSCSEG00000009927)	ENSCSEG00000009893	ENSCSEG00000009879	lipea (ENSCSEG00000009857)	slc9a3.2 (ENSCSEG00000009840)	olah (ENSCSEG00000009820)	ago3b (ENSCSEG00000009788)	si:dkey-211g8.6 (ENSCSEG00000009783)	tekt2 (ENSCSEG00000009743)	usf2 (ENSCSEG00000009697)	LMNA (ENSCSEG00000009668) #22	naxe (ENSCSEG00000009651)	scn1bb (ENSCSEG00000009636)	ENSCSEG00000009615	ENSCSEG00000009604	GALR1 (ENSCSEG00000009587)	sall3b (ENSCSEG00000009569)	atp9b (ENSCSEG00000009524)	nfatc1 (ENSCSEG00000009516)	ENSCSEG00000009489	slc52a2 (ENSCSEG00000009476)	ENSCSEG00000009464	ENSCSEG00000009415	ENSCSEG00000009400	ENSCSEG00000009393	pleca (ENSCSEG00000009105)
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00950000182929.B.b.a	ENSGT00940000177483	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000159286.b	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a
Aplocheiloidei	ANCESTRAL SPECIES	42	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00950000182929.B.b.a	ENSGT00940000177483	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071.w	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358.e	ENSGT00940000162855.a.b	ENSGT00390000002661.b.ub.a	ENSGT00530000063880.b.e
Mangrove rivulus	MODERN SPECIES	641															usf2 (ENSKMAG00000012233)	LMNA (ENSKMAG00000012257) #22	naxe (ENSKMAG00000012290)	scn1bb (ENSKMAG00000012324)	ENSKMAG00000012342	ENSKMAG00000012357	GALR1 (ENSKMAG00000012389)	ENSKMAG00000012400	sall3b (ENSKMAG00000012418)	ENSKMAG00000012435
Turquoise killifish	MODERN SPECIES	1628	edn1 (ENSNFUG00015022846)	HIVEP1 (ENSNFUG00015022853)	TMEM170B (ENSNFUG00015022857)	NEDD9 (ENSNFUG00015022859)	ENSNFUG00015022868	ENSNFUG00015022876	apoa4a (ENSNFUG00015022908)	ENSNFUG00015022916	lipea (ENSNFUG00015022936)	slc9a3.2 (ENSNFUG00015022957)	OLAH (ENSNFUG00015023080)	ago3b (ENSNFUG00015023091)	si:dkey-211g8.6 (ENSNFUG00015023201)	ENSNFUG00015023209	usf2 (ENSNFUG00015023218)	LMNA (ENSNFUG00015023229) #22	naxe (ENSNFUG00015023266)	SCN1BB (ENSNFUG00015023271)	ENSNFUG00015023274	ENSNFUG00015014081	GALR1 (ENSNFUG00015014096)	sall3b (ENSNFUG00015014121)	atp9b (ENSNFUG00015014178)	nfatc1 (ENSNFUG00015016042)	ENSNFUG00015016054	SLC52A2 (ENSNFUG00015016062)	Nfu_g_1_012318 (ENSNFUG00015016068)	ENSNFUG00015016073	ENSNFUG00015016080	ENSNFUG00015016096	ENSNFUG00015016108
Cyprinodontoidei	ANCESTRAL SPECIES	31	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00950000182929.B.b.a	ENSGT00940000177483.a	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000159286.b	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a
NAME_4	ANCESTRAL SPECIES	83	ENSGT00940000162287.D.k.a	ENSGT00950000182929.B.b.a	ENSGT00940000177483.b	ENSGT00940000177483.a	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a
Mummichog	MODERN SPECIES	441				ENSFHEG00000015378	ENSFHEG00000015384	apoa4a (ENSFHEG00000015404)	tomm40l (ENSFHEG00000015423)	ENSFHEG00000015487	lipea (ENSFHEG00000015520)	slc9a3.2 (ENSFHEG00000016055)	olah (ENSFHEG00000016087)	ago3b (ENSFHEG00000016205)	si:dkey-211g8.6 (ENSFHEG00000016222)	tekt2 (ENSFHEG00000016261)	usf2 (ENSFHEG00000016274)	LMNA (ENSFHEG00000016316) #22	naxe (ENSFHEG00000016326)	scn1bb (ENSFHEG00000016362)	ENSFHEG00000016389	ENSFHEG00000016426	GALR1 (ENSFHEG00000016447)	sall3b (ENSFHEG00000016548)	atp9b (ENSFHEG00000016652)	nfatc1 (ENSFHEG00000016675)	ENSFHEG00000016709	slc52a2 (ENSFHEG00000016711)	ENSFHEG00000016719	ENSFHEG00000016730
Sheepshead minnow	MODERN SPECIES	424						ENSCVAG00000017409	ENSCVAG00000017370	ENSCVAG00000017346	zgc:92818 (ENSCVAG00000017333)	vps35 (ENSCVAG00000017325)	ENSCVAG00000017268	si:dkey-211g8.6 (ENSCVAG00000017210)	ENSCVAG00000017198	tekt2 (ENSCVAG00000017190)	ENSCVAG00000017157	LMNA (ENSCVAG00000017134) #22	naxe (ENSCVAG00000017119)	scn1bb (ENSCVAG00000017082)	ENSCVAG00000017059	ENSCVAG00000017054	ENSCVAG00000017022	sall3b (ENSCVAG00000017005)	atp9b (ENSCVAG00000016843)	nfatc1 (ENSCVAG00000016766)	ENSCVAG00000016677	slc52a2 (ENSCVAG00000016662)	ENSCVAG00000016655	ENSCVAG00000016627	pleca (ENSCVAG00000016613)	eif3eb (ENSCVAG00000016536)	TMEM74 (ENSCVAG00000016497)
Poeciliinae	ANCESTRAL SPECIES	24	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00950000182929.B.b.a	ENSGT00940000177483.a	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000158117	ENSGT00940000157222.a	ENSGT00390000016823	ENSGT00940000163648.b	ENSGT00390000008551	ENSGT00390000011115	ENSGT00940000164552	ENSGT00530000063426.b.a	ENSGT00940000154798.b	ENSGT00940000157740	ENSGT00940000166692
Poecilia	ANCESTRAL SPECIES	38	ENSGT00950000183008.a.a.a.b	ENSGT00940000164868.C.d	ENSGT00950000182929.B.b.a	ENSGT00940000177483.a	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000158117	ENSGT00940000157222.a	ENSGT00390000016823	ENSGT00940000163648.b	ENSGT00390000008551	ENSGT00390000011115
NAME_6	ANCESTRAL SPECIES	109	ENSGT00950000183008.a.a.a.b	ENSGT00940000164868.C.d	ENSGT00950000182929.B.b.a	ENSGT00940000177483.a	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000158117	ENSGT00940000157222.a	ENSGT00390000016823	ENSGT00940000163648.b	ENSGT00390000008551	ENSGT00390000011115
Amazon molly	MODERN SPECIES	362	TMEM170B (ENSPFOG00000005459)	nedd9 (ENSPFOG00000005482)	ENSPFOG00000005655	ENSPFOG00000005684	ENSPFOG00000005708	tomm40l (ENSPFOG00000005745)	ENSPFOG00000005750	lipea (ENSPFOG00000005863)	slc9a3.2 (ENSPFOG00000006131)	olah (ENSPFOG00000006539)	ago3b (ENSPFOG00000006684)	si:dkey-211g8.6 (ENSPFOG00000020942)	ENSPFOG00000020943	tekt2 (ENSPFOG00000007012)	usf2 (ENSPFOG00000007142)	LMNA (ENSPFOG00000007337) #22	naxe (ENSPFOG00000007482)	scn1bb (ENSPFOG00000007582)	ENSPFOG00000007642	ENSPFOG00000007654	angpt1 (ENSPFOG00000007712)	sdc2 (ENSPFOG00000007802)	tpmt.1 (ENSPFOG00000007839)	ENSPFOG00000020944	c19h1orf109 (ENSPFOG00000007956)	cdca8 (ENSPFOG00000007996)
Sailfin molly	MODERN SPECIES	211	nedd9 (ENSPLAG00000017709)	ENSPLAG00000017700	apoea (ENSPLAG00000017693)	ENSPLAG00000017658	ENSPLAG00000017649	tomm40l (ENSPLAG00000017633)	ENSPLAG00000000403	lipea (ENSPLAG00000017573)	slc9a3.2 (ENSPLAG00000017548)	olah (ENSPLAG00000017460)	ago3b (ENSPLAG00000017432)	si:dkey-211g8.6 (ENSPLAG00000017393)	ENSPLAG00000017385	tekt2 (ENSPLAG00000017376)	usf2 (ENSPLAG00000017331)	LMNA (ENSPLAG00000017305) #22	naxe (ENSPLAG00000017276)	scn1bb (ENSPLAG00000017270)	ENSPLAG00000017262	ENSPLAG00000017253
Guppy	MODERN SPECIES	441	TMEM170B (ENSPREG00000008823)	nedd9 (ENSPREG00000008848)	ENSPREG00000008886	ENSPREG00000008893	ENSPREG00000008910	ENSPREG00000008921	tomm40l (ENSPREG00000008932)	ENSPREG00000008948	lipea (ENSPREG00000008976)	slc9a3.2 (ENSPREG00000009025)	olah (ENSPREG00000009063)	ago3b (ENSPREG00000009084)	si:dkey-211g8.6 (ENSPREG00000009108)	tekt2 (ENSPREG00000009128)	usf2 (ENSPREG00000009152)	LMNA (ENSPREG00000009193) #22	naxe (ENSPREG00000009217)	scn1bb (ENSPREG00000009241)	ENSPREG00000009274	ENSPREG00000009304	angpt1 (ENSPREG00000009349)	sdc2 (ENSPREG00000009436)	tpmt.1 (ENSPREG00000009448)	ENSPREG00000009468	c19h1orf109 (ENSPREG00000009487)	cdca8 (ENSPREG00000009494)	ENSPREG00000009527	ints8 (ENSPREG00000009537)	ENSPREG00000009564	msto1 (ENSPREG00000009596) #10	srsf4 (ENSPREG00000009639)
Platyfish	MODERN SPECIES	4	nedd9 (ENSXMAG00000016120)	ENSXMAG00000025340	ENSXMAG00000016118	ENSXMAG00000020999	apoa4a (ENSXMAG00000025130)	tomm40l (ENSXMAG00000016106)	ENSXMAG00000016090	lipea (ENSXMAG00000007235)	slc9a3.2 (ENSXMAG00000007197)	olah (ENSXMAG00000027083)	ago3b (ENSXMAG00000027615)	si:dkey-211g8.6 (ENSXMAG00000019697)	ENSXMAG00000021651	tekt2 (ENSXMAG00000029176)	usf2 (ENSXMAG00000007098)	LMNA (ENSXMAG00000007079) #22	naxe (ENSXMAG00000029975)	scn1bb (ENSXMAG00000021970)	ENSXMAG00000007053	ENSXMAG00000026988	angpt1 (ENSXMAG00000029564)	tpmt.1 (ENSXMAG00000007036)	ENSXMAG00000019696	c19h1orf109 (ENSXMAG00000007033)	cdca8 (ENSXMAG00000007026)	ENSXMAG00000016808	ENSXMAG00000028114	ENSXMAG00000021813	ENSXMAG00000028150	ENSXMAG00000016771	ENSXMAG00000016765
Oryzias	ANCESTRAL SPECIES	23	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.d	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780	ENSGT00940000157768	ENSGT00390000006540	ENSGT00940000157921
Oryzias_b	ANCESTRAL SPECIES	27	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.d	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780	ENSGT00940000157768	ENSGT00390000006540	ENSGT00940000157921
Javanese ricefish	MODERN SPECIES	2	myo1g (ENSOJAG00000002719)	si:dkeyp-92c9.2 (ENSOJAG00000002984)	edn1 (ENSOJAG00000002995)	ENSOJAG00000003004	TMEM170B (ENSOJAG00000003011)	nedd9 (ENSOJAG00000003018)	apoea (ENSOJAG00000003033)	apoa4a (ENSOJAG00000003038)	ENSOJAG00000003059	ENSOJAG00000003222	slc9a3.2 (ENSOJAG00000003301)	ago3b (ENSOJAG00000004733)	si:dkey-211g8.6 (ENSOJAG00000006606)	ENSOJAG00000006649	usf2 (ENSOJAG00000006840)	LMNA (ENSOJAG00000006940) #22	naxe (ENSOJAG00000007389)	scn1bb (ENSOJAG00000007413)	ENSOJAG00000007567	ENSOJAG00000007581	ENSOJAG00000007595	sall3b (ENSOJAG00000007612)	atp9b (ENSOJAG00000007732)	MATCAP2 (ENSOJAG00000010287)	eepd1 (ENSOJAG00000010375)	SEPTIN7 (ENSOJAG00000010516)	lrrc3b (ENSOJAG00000011773)	OXSM (ENSOJAG00000011781)	ngly1 (ENSOJAG00000011805)	RARB (ENSOJAG00000013587)	OPRD1 (ENSOJAG00000013627)
Indian medaka	MODERN SPECIES	3	si:dkeyp-92c9.2 (ENSOMEG00000022471)	edn1 (ENSOMEG00000022459)	HIVEP1 (ENSOMEG00000022437)	TMEM170B (ENSOMEG00000022416)	nedd9 (ENSOMEG00000022405)	ENSOMEG00000022388	apoea (ENSOMEG00000022353)	apoa4a (ENSOMEG00000022338)	ENSOMEG00000022326	lipea (ENSOMEG00000000584)	slc9a3.2 (ENSOMEG00000022221)	olah (ENSOMEG00000022108)	ago3b (ENSOMEG00000022085)	tekt2 (ENSOMEG00000021938)	usf2 (ENSOMEG00000021824)	LMNA (ENSOMEG00000021784) #22	naxe (ENSOMEG00000021712)	scn1bb (ENSOMEG00000021731)	ENSOMEG00000021693	ENSOMEG00000021663	ENSOMEG00000021647	atp9b (ENSOMEG00000021615)	asns (ENSOMEG00000021455)	anln (ENSOMEG00000021404)	MATCAP2 (ENSOMEG00000000692)	eepd1 (ENSOMEG00000000960)	SEPTIN7 (ENSOMEG00000021271)	lrrc3b (ENSOMEG00000021216)	OXSM (ENSOMEG00000021209)	ngly1 (ENSOMEG00000000871)	top2b (ENSOMEG00000021187)
Oryzias_a	ANCESTRAL SPECIES	18	ENSGT00950000183053.D	ENSGT00940000158242	ENSGT00940000160424	ENSGT00950000183008.a.a.a.b	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.d	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780	ENSGT00940000157768	ENSGT00390000006540	ENSGT00940000157921
Japanese Medaka HdrR	MODERN SPECIES	2	HIVEP1 (ENSORLG00000009270)	TMEM170B (ENSORLG00000009260)	nedd9 (ENSORLG00000009253)	ENSORLG00000027395	apoea (ENSORLG00000027981)	apoa4a (ENSORLG00000009193)	ENSORLG00000009178	lipea (ENSORLG00000009156)	slc9a3.2 (ENSORLG00000009128)	olah (ENSORLG00000024308)	ago3b (ENSORLG00000009091)	si:dkey-211g8.6 (ENSORLG00000009062)	ENSORLG00000009048	tekt2 (ENSORLG00000009043)	usf2 (ENSORLG00000009013)	ENSORLG00000008984 #22	naxe (ENSORLG00000008933)	ENSORLG00000008907	ENSORLG00000008895	ENSORLG00000022343	ENSORLG00000024765	ENSORLG00000030588	atp9b (ENSORLG00000008869)	asns (ENSORLG00000008822)	anln (ENSORLG00000008791)	MATCAP2 (ENSORLG00000008766)	eepd1 (ENSORLG00000008752)	ENSORLG00000024236	SEPTIN7 (ENSORLG00000008725)	lrrc3b (ENSORLG00000008660)	OXSM (ENSORLG00000008653)
Chinese medaka	MODERN SPECIES	659	myo1g (ENSOSIG00000019767)	si:dkeyp-92c9.2 (ENSOSIG00000019691)	edn1 (ENSOSIG00000019690)	HIVEP1 (ENSOSIG00000019686)	TMEM170B (ENSOSIG00000019677)	nedd9 (ENSOSIG00000019673)	apoea (ENSOSIG00000019672)	apoa4a (ENSOSIG00000019670)	ENSOSIG00000019669	slc9a3.2 (ENSOSIG00000019646)	olah (ENSOSIG00000019607)	ago3b (ENSOSIG00000012962)	ENSOSIG00000012894	si:dkey-211g8.6 (ENSOSIG00000012892)	usf2 (ENSOSIG00000012861)	LMNA (ENSOSIG00000012777) #22	naxe (ENSOSIG00000012769)	scn1bb (ENSOSIG00000012767)	ENSOSIG00000012764	sall3b (ENSOSIG00000012762)	atp9b (ENSOSIG00000007667)	asns (ENSOSIG00000007592)	MATCAP2 (ENSOSIG00000007588)	eepd1 (ENSOSIG00000007586)	SEPTIN7 (ENSOSIG00000005187)	lrrc3b (ENSOSIG00000005120)	OXSM (ENSOSIG00000005118)	ngly1 (ENSOSIG00000005113)	top2b (ENSOSIG00000004367)	RARB (ENSOSIG00000004186)	oprd1b (ENSOSIG00000003838)
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616.g	ENSGT00940000158616.h	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616.g.a	ENSGT00940000158616.h	ENSGT00390000015518	ENSGT00940000158616.g.b	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616.g.a	ENSGT00940000158616.h	ENSGT00390000015518	ENSGT00940000158616.g.b	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616.g.a	ENSGT00940000158616.h	ENSGT00390000015518	ENSGT00940000158616.g.b	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Burton s mouthbrooder	MODERN SPECIES	652	srsf4 (ENSHBUG00000016905)	msto1 (ENSHBUG00000016920) #10	apoea (ENSHBUG00000016924)	apoa4a (ENSHBUG00000016934)	apoa4a (ENSHBUG00000016946)	tomm40l (ENSHBUG00000016986)	ENSHBUG00000017033	lipea (ENSHBUG00000017062)	SLC9A3 (ENSHBUG00000017081)	SLC9A3 (ENSHBUG00000000512)	olah (ENSHBUG00000017102)	SLC9A3 (ENSHBUG00000017698)	ago3b (ENSHBUG00000017794)	tekt2 (ENSHBUG00000017817)	usf2 (ENSHBUG00000017886)	LMNA (ENSHBUG00000017899) #22	naxe (ENSHBUG00000017915)	scn1bb (ENSHBUG00000017941)	ENSHBUG00000017984	ENSHBUG00000018071	GALR1 (ENSHBUG00000018100)	sall3b (ENSHBUG00000018127)	atp9b (ENSHBUG00000018385)	nfatc1 (ENSHBUG00000018413)	ENSHBUG00000018439	slc52a2 (ENSHBUG00000018450)	ENSHBUG00000018458	ENSHBUG00000018568
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616.g.a	ENSGT00940000158616.h	ENSGT00390000015518	ENSGT00940000158616.g.b	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b.c	ENSGT00950000182929.B.a.b.d	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00940000158616.g.a	ENSGT00940000158616.h	ENSGT00390000015518	ENSGT00940000158616.g.b	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00940000159356.a.b	ENSGT00940000157071	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000177098	ENSGT00940000162855.a.a.a.b
Eastern happy	MODERN SPECIES	13	apoea (ENSACLG00000003342)	apoa4a (ENSACLG00000003335)	apoa4a (ENSACLG00000003327)	tomm40l (ENSACLG00000003295)	ENSACLG00000003260	lipea (ENSACLG00000003226)	SLC9A3 (ENSACLG00000003211)	SLC9A3 (ENSACLG00000002443)	olah (ENSACLG00000002387)	SLC9A3 (ENSACLG00000002050)	ENSACLG00000002038	ago3b (ENSACLG00000001965)	si:dkey-211g8.6 (ENSACLG00000001958)	tekt2 (ENSACLG00000001940)	usf2 (ENSACLG00000001881)	LMNA (ENSACLG00000001850) #22	naxe (ENSACLG00000001844)	scn1bb (ENSACLG00000001798)	ENSACLG00000001760	ENSACLG00000001669	GALR1 (ENSACLG00000001631)	sall3b (ENSACLG00000001619)	atp9b (ENSACLG00000001372)	nfatc1 (ENSACLG00000001312)	ENSACLG00000001299	slc52a2 (ENSACLG00000001159)	ENSACLG00000001152	ENSACLG00000001071	ENSACLG00000001062	ENSACLG00000001036	ENSACLG00000001013
Zebra mbuna	MODERN SPECIES	1104	apoea (ENSMZEG00005026273)	apoa4a (ENSMZEG00005026272)	apoa4a (ENSMZEG00005026271)	tomm40l (ENSMZEG00005026270)	ENSMZEG00005026268	lipea (ENSMZEG00005026267)	SLC9A3 (ENSMZEG00005026265)	ENSMZEG00005026255	olah (ENSMZEG00005026254)	SLC9A3 (ENSMZEG00005026248)	ago3b (ENSMZEG00005026243)	si:dkey-211g8.6 (ENSMZEG00005026242)	ENSMZEG00005026241	tekt2 (ENSMZEG00005026240)	usf2 (ENSMZEG00005026239)	LMNA (ENSMZEG00005026237) #22	naxe (ENSMZEG00005026236)	scn1bb (ENSMZEG00005026234)	ENSMZEG00005026231	ENSMZEG00005026227	GALR1 (ENSMZEG00005026225)	sall3b (ENSMZEG00005026224)	atp9b (ENSMZEG00005026213)	nfatc1 (ENSMZEG00005026209)	ENSMZEG00005026206	slc52a2 (ENSMZEG00005026205)	ENSMZEG00005026204	ENSMZEG00005026202	ENSMZEG00005026200	ENSMZEG00005026199	ENSMZEG00005026198
P. nyererei	MODERN SPECIES	388	apoea (ENSPNYG00000003836)	apoa4a (ENSPNYG00000003848)	apoa4a (ENSPNYG00000003912)	tomm40l (ENSPNYG00000003936)	ENSPNYG00000003986	lipea (ENSPNYG00000004041)	SLC9A3 (ENSPNYG00000004080)	SLC9A3 (ENSPNYG00000004139)	olah (ENSPNYG00000004193)	SLC9A3 (ENSPNYG00000004313)	ago3b (ENSPNYG00000004707)	si:dkey-211g8.6 (ENSPNYG00000004770)	ENSPNYG00000004789	tekt2 (ENSPNYG00000004799)	usf2 (ENSPNYG00000004839)	LMNA (ENSPNYG00000004915) #22	naxe (ENSPNYG00000005090)	scn1bb (ENSPNYG00000005195)	ENSPNYG00000005276	ENSPNYG00000005316	GALR1 (ENSPNYG00000005338)	sall3b (ENSPNYG00000005353)	atp9b (ENSPNYG00000005426)	nfatc1 (ENSPNYG00000005573)	ENSPNYG00000005598	slc52a2 (ENSPNYG00000005627)	ENSPNYG00000005638	ENSPNYG00000005659	ENSPNYG00000005719	ENSPNYG00000005739	pleca (ENSPNYG00000005906)
Lyretail cichlid	MODERN SPECIES	322	ENSNBRG00000014926	apoa4a (ENSNBRG00000015028)	tomm40l (ENSNBRG00000015051)	ENSNBRG00000015075	lipea (ENSNBRG00000015105)	SLC9A3 (ENSNBRG00000015199)	SLC9A3 (ENSNBRG00000015523)	olah (ENSNBRG00000015597)	ENSNBRG00000015635	ENSNBRG00000015670	ago3b (ENSNBRG00000015687)	si:dkey-211g8.6 (ENSNBRG00000015723)	ENSNBRG00000015737	tekt2 (ENSNBRG00000015747)	usf2 (ENSNBRG00000015773)	LMNA (ENSNBRG00000015819) #22	naxe (ENSNBRG00000015929)	scn1bb (ENSNBRG00000015939)	ENSNBRG00000015946	ENSNBRG00000015958	GALR1 (ENSNBRG00000015980)	sall3b (ENSNBRG00000016034)	atp9b (ENSNBRG00000016060)	nfatc1 (ENSNBRG00000016126)	ENSNBRG00000016167	slc52a2 (ENSNBRG00000016170)	ENSNBRG00000016177	fbxl6 (ENSNBRG00000016187)	ENSNBRG00000016248	ENSNBRG00000016263	pleca (ENSNBRG00000016348)
Nile tilapia	MODERN SPECIES	13	msto1 (ENSONIG00000013734) #10	ENSONIG00000013737	apoa4a (ENSONIG00000035201)	apoa4a (ENSONIG00000036660)	tomm40l (ENSONIG00000013743)	ENSONIG00000013748	lipea (ENSONIG00000013751)	olah (ENSONIG00000013757)	ENSONIG00000013756	ENSONIG00000043159	SLC9A3 (ENSONIG00000013755)	ago3b (ENSONIG00000013760)	si:dkey-211g8.6 (ENSONIG00000043224)	tekt2 (ENSONIG00000027947)	usf2 (ENSONIG00000013775)	LMNA (ENSONIG00000013779) #22	naxe (ENSONIG00000013784)	scn1b (ENSONIG00000029508)	ENSONIG00000036526	ENSONIG00000027310	ENSONIG00000013788	GALR1 (ENSONIG00000013789)	sall3b (ENSONIG00000013791)	atp9b (ENSONIG00000038600)	nfatc1 (ENSONIG00000013792)	ENSONIG00000013795	slc52a2 (ENSONIG00000013797)	ENSONIG00000013799	ENSONIG00000013800	ENSONIG00000039220	ENSONIG00000031797
Midas cichlid	MODERN SPECIES	1344	apoa4a (ENSACIG00000018310)	apoa4a (ENSACIG00000018323)	tomm40l (ENSACIG00000018341)	ENSACIG00000018355	lipea (ENSACIG00000018375)	ENSACIG00000018396	SLC9A3 (ENSACIG00000018434)	SLC9A3 (ENSACIG00000018778)	olah (ENSACIG00000019256)	ENSACIG00000019267	ago3b (ENSACIG00000019272)	si:dkey-211g8.6 (ENSACIG00000019287)	ENSACIG00000019292	tekt2 (ENSACIG00000019294)	usf2 (ENSACIG00000019315)	LMNA (ENSACIG00000019327) #22	naxe (ENSACIG00000019341)	scn1bb (ENSACIG00000019352)	ENSACIG00000019365	ENSACIG00000019393	GALR1 (ENSACIG00000019399)	sall3b (ENSACIG00000019407)	atp9b (ENSACIG00000019426)	nfatc1 (ENSACIG00000019460)	ENSACIG00000019493	slc52a2 (ENSACIG00000019518)	ENSACIG00000019543	fbxl6 (ENSACIG00000019552)	ENSACIG00000019609	pleca (ENSACIG00000019640)	ENSACIG00000019704
Pomacentridae	ANCESTRAL SPECIES	191									ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a
Pomacentridae_A	ANCESTRAL SPECIES	37									ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00530000063426.b.a	ENSGT00940000154798.b	ENSGT00940000157740	ENSGT00940000166692	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00390000016823.f	ENSGT01060000250499	ENSGT00390000016823.e	ENSGT00940000157222.a
Amphiprion	ANCESTRAL SPECIES	114										ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00950000182894.D	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00390000014772.k	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00530000063426.b.a	ENSGT00940000154798.b	ENSGT00940000157740	ENSGT00940000166692	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00390000016823.f	ENSGT00390000016823.e	ENSGT00940000157222.a	ENSGT00940000158117
Orange clownfish	MODERN SPECIES	8	ENSAPEG00000020870	srsf4 (ENSAPEG00000020826)	msto1 (ENSAPEG00000020795) #10	apoea (ENSAPEG00000020773)	ENSAPEG00000020754	ENSAPEG00000020718	tomm40l (ENSAPEG00000020695)	ENSAPEG00000020642	lipea (ENSAPEG00000020612)	slc9a3.2 (ENSAPEG00000020397)	olah (ENSAPEG00000020336)	ago3b (ENSAPEG00000020249)	si:dkey-211g8.6 (ENSAPEG00000020224)	tekt2 (ENSAPEG00000020136)	usf2 (ENSAPEG00000020087)	LMNA (ENSAPEG00000020028) #22	naxe (ENSAPEG00000020011)	scn1bb (ENSAPEG00000019984)	ENSAPEG00000019972	ENSAPEG00000019913	GALR1 (ENSAPEG00000019895)	ENSAPEG00000019856	ENSAPEG00000019826	ENSAPEG00000019808	ENSAPEG00000019699	anxa14 (ENSAPEG00000019667)	zgc:114119 (ENSAPEG00000019636)	ENSAPEG00000019621	ENSAPEG00000019604	ENSAPEG00000019565	ENSAPEG00000019547
Clown anemonefish	MODERN SPECIES	951														EYA4 (ENSAOCG00000020105)	ENSAOCG00000020116 #22	ENSAOCG00000001490 #22	naxe (ENSAOCG00000020174)	scn1bb (ENSAOCG00000020207)	ENSAOCG00000020253	ENSAOCG00000020278	GALR1 (ENSAOCG00000001499)	ENSAOCG00000020363
Spiny chromis	MODERN SPECIES	2013												si:dkey-211g8.6 (ENSAPOG00000012454)	ENSAPOG00000012433	tekt2 (ENSAPOG00000012422)	usf2 (ENSAPOG00000012363)	LMNA (ENSAPOG00000012298) #22	naxe (ENSAPOG00000012257)	scn1bb (ENSAPOG00000012243)	ENSAPOG00000012203
Bicolor damselfish	MODERN SPECIES	1828													ENSSPAG00000001875	tekt2 (ENSSPAG00000001882)	usf2 (ENSSPAG00000001967)	LMNA (ENSSPAG00000002034) #22	naxe (ENSSPAG00000002053)	scn1bb (ENSSPAG00000002066)	ENSSPAG00000002076	ENSSPAG00000002096	GALR1 (ENSSPAG00000002111)
Tiger tail seahorse	MODERN SPECIES	128	msto1 (ENSHCOG00000012328) #10	ENSHCOG00000012278	apoa4a (ENSHCOG00000012266)	tomm40l (ENSHCOG00000012258)	ENSHCOG00000012238	lipea (ENSHCOG00000012168)	SLC9A3 (ENSHCOG00000012017)	ENSHCOG00000011972	olah (ENSHCOG00000011885)	ago3b (ENSHCOG00000011851)	si:dkey-211g8.6 (ENSHCOG00000011773)	ENSHCOG00000011764	tekt2 (ENSHCOG00000011749)	tekt2 (ENSHCOG00000011661)	usf2 (ENSHCOG00000011583)	LMNA (ENSHCOG00000011568) #22	naxe (ENSHCOG00000011541)	scn1bb (ENSHCOG00000011531)	scn1bb (ENSHCOG00000011384)	ENSHCOG00000011274	ENSHCOG00000011255	ENSHCOG00000011226	dync1li1 (ENSHCOG00000011174)	CPNE4 (ENSHCOG00000011052)	mrpl3 (ENSHCOG00000011011)	cspg5b (ENSHCOG00000011003)	ENSHCOG00000010974	ENSHCOG00000010932	ENSHCOG00000010921	hycc1 (ENSHCOG00000010904)	TOMM7 (ENSHCOG00000010876)
Pinecone sodierfish	MODERN SPECIES	2	srsf4 (ENSMMDG00005017182)	msto1 (ENSMMDG00005017177) #10	ENSMMDG00005017166	apoa4a (ENSMMDG00005017161)	apoa4a (ENSMMDG00005017159)	tomm40l (ENSMMDG00005017112)	ENSMMDG00005017047	ENSMMDG00005016853	lipea (ENSMMDG00005016840)	slc9a3.2 (ENSMMDG00005016833)	olah (ENSMMDG00005016830)	ago3b (ENSMMDG00005016164)	tekt2 (ENSMMDG00005016151)	si:dkey-211g8.6 (ENSMMDG00005016147)	usf2 (ENSMMDG00005016137)	LMNA (ENSMMDG00005016060) #22	naxe (ENSMMDG00005016041)	scn1bb (ENSMMDG00005016039)	ENSMMDG00005016037	ENSMMDG00005016033	GALR1 (ENSMMDG00005016032)	sall3b (ENSMMDG00005016031)	atp9b (ENSMMDG00005015304)	nfatc1 (ENSMMDG00005015237)	ENSMMDG00005015233	slc52a2 (ENSMMDG00005015232)	ENSMMDG00005015231	ENSMMDG00005015230	ENSMMDG00005015229	pleca (ENSMMDG00005006473)	eif3eb (ENSMMDG00005006314)
Cod	MODERN SPECIES	14	ENSGMOG00000027138	ENSGMOG00000012919 #10	ENSGMOG00000029901	apoa4a (ENSGMOG00000012933)	tomm40l (ENSGMOG00000009799)	ENSGMOG00000003561	ENSGMOG00000012948	lipea (ENSGMOG00000013020)	slc9a3.2 (ENSGMOG00000013044)	ENSGMOG00000000782	ENSGMOG00000013069	tekt2 (ENSGMOG00000013094)	ENSGMOG00000028761	si:dkey-211g8.6 (ENSGMOG00000013240)	usf2 (ENSGMOG00000013274)	ENSGMOG00000013300 #22	ENSGMOG00000013313	ENSGMOG00000013331	ENSGMOG00000036638	ENSGMOG00000035784	ENSGMOG00000032513	sall3b (ENSGMOG00000034916)	atp9b (ENSGMOG00000013418)	ENSGMOG00000032173	slc52a2 (ENSGMOG00000034117)	ENSGMOG00000030325	ENSGMOG00000013480	ENSGMOG00000027494	ENSGMOG00000031740	pleca (ENSGMOG00000013505)	eif3eb (ENSGMOG00000013547)
Protacanthopterygii	ANCESTRAL SPECIES	119	ENSGT00940000166158.a.a	ENSGT00940000163756.c.a	ENSGT01050000244883.A.b	ENSGT00940000162287.D	ENSGT00950000182929.B.b.a	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h.e	ENSGT00940000158616	ENSGT00390000015518	ENSGT00940000155256.d.b.b	ENSGT00950000182894.D.f	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000160991.b	ENSGT00940000171486.B
Salmoninae	ANCESTRAL SPECIES	593								ENSGT00940000165835.b.f	ENSGT00730000111056.h.e	ENSGT00940000158616.k.b	ENSGT00940000155256.d.b.b.b	ENSGT00950000182894.D.f	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a.i	ENSGT00940000160991.b.c.a	ENSGT00390000018560.a.a.a.a.b.j.b	ENSGT00940000171486.B	ENSGT00940000159356.a.b.d	ENSGT00940000157616.j.a.d	ENSGT00390000003774.a.a.c.d
Salmoninae_a	ANCESTRAL SPECIES	139	ENSGT00940000156524.a.f	ENSGT00530000064050.a.h	ENSGT00950000183155.a.b.a.a.b.c.a.a	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00950000183155.a.b.a.b.c.b	ENSGT00940000166158.a.a.a	ENSGT00940000163756.c.a.b	ENSGT00940000162367.f.hc	ENSGT00950000182929.B.b.a	ENSGT00940000165835.b.f	ENSGT00730000111056.h.e	ENSGT00940000158616.k.b	ENSGT00940000155256.d.b.b.b	ENSGT00950000182894.D.f	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a.i	ENSGT00940000160991.b.c.a	ENSGT00390000018560.a.a.a.a.b.j.b	ENSGT00940000171486.B	ENSGT00940000157616.j.a.d	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b.d	ENSGT00390000007776	ENSGT00950000183145.C	ENSGT00940000162108.a
Salmo	ANCESTRAL SPECIES	125	ENSGT00390000003453.b.b.d	ENSGT00940000164368.A	ENSGT00940000156524.a.f	ENSGT00530000064050.a.h	ENSGT00950000183155.a.b.a.a.b.c.a.a	ENSGT00940000166158.a.a.a	ENSGT00940000163756.c.a.b	ENSGT00940000162367.f.hc	ENSGT00950000182929.B.b.a	ENSGT00940000165835.b.f	ENSGT00730000111056.h.e	ENSGT00940000158616.k.b	ENSGT00940000155256.d.b.b.b	ENSGT00950000182894.D.f	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a.i	ENSGT00940000160991.b.c.a	ENSGT00390000018560.a.a.a.a.b.j.b	ENSGT00940000171486.B	ENSGT00940000157616.j.a.d	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b.d	ENSGT00390000007776	ENSGT00950000183145.C
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000004354	ENSSSAG00000078474	ENSSSAG00000088435	ENSSSAG00000084776	ENSSSAG00000078462	ENSSSAG00000114553	ENSSSAG00000086742	ENSSSAG00000078450	ENSSSAG00000078337	ENSSSAG00000110468	ENSSSAG00000119620	ENSSSAG00000055927	ENSSSAG00000118424	ENSSSAG00000039231	ENSSSAG00000039714	ENSSSAG00000040032 #22	apoa1bp (ENSSSAG00000042880)	ENSSSAG00000042887	ENSSSAG00000042912	ENSSSAG00000105704	ENSSSAG00000083470	ENSSSAG00000042963	ENSSSAG00000100073	ENSSSAG00000110063	ENSSSAG00000045559	ENSSSAG00000082337	ENSSSAG00000072561	ENSSSAG00000072574	ENSSSAG00000072580	ENSSSAG00000072588	ENSSSAG00000096527
River trout	MODERN SPECIES	29	ubap2l (ENSSTUG00000034545)	aqp10b (ENSSTUG00000034698)	znf687b (ENSSTUG00000034715)	PSMD4 (ENSSTUG00000034773)	ENSSTUG00000034979	ENSSTUG00000034993	ENSSTUG00000035080	ENSSTUG00000035099	ENSSTUG00000035107	ENSSTUG00000035131	lipea (ENSSTUG00000035734)	SLC9A3 (ENSSTUG00000035842)	ago3b (ENSSTUG00000036333)	tekt2 (ENSSTUG00000037868)	usf2 (ENSSTUG00000037986)	LMNA (ENSSTUG00000038075) #22	naxe (ENSSTUG00000038132)	ENSSTUG00000038147	scn1bb (ENSSTUG00000038164)	ENSSTUG00000038181	ENSSTUG00000038184	nfatc1 (ENSSTUG00000038206)	ENSSTUG00000038234	pleca (ENSSTUG00000038313)	nudcd1 (ENSSTUG00000039190)	ENSSTUG00000039201
Oncorhynchus	ANCESTRAL SPECIES	40	ENSGT00530000064050.a.h	ENSGT00950000183155.a.b.a.a.b.c.a.a	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00940000166158.a.a.a	ENSGT00940000163756.c.a.b	ENSGT00940000162367.f.hc	ENSGT00950000182929.B.b.a	ENSGT00940000165835.b.f	ENSGT00730000111056.h.e	ENSGT00940000158616.k.b	ENSGT00940000155256.d.b.b.b	ENSGT00950000182894.D.f	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a.i	ENSGT00940000160991.b.c.a	ENSGT00390000018560.a.a.a.a.b.j.b	ENSGT00940000171486.B	ENSGT00940000157616.j.a.d	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b.d	ENSGT00390000007776	ENSGT00950000183145.C.n.b
Oncorhynchus_a	ANCESTRAL SPECIES	96	ENSGT00530000064050.a.h	ENSGT00950000183155.a.b.a.a.b.c.a.a	ENSGT00950000183155.a.b.a.a.b.c.b	ENSGT00940000166158.a.a.a	ENSGT00940000163756.c.a.b	ENSGT00940000162287.D	ENSGT00950000182929.B.b.a	ENSGT00940000165835.b.f	ENSGT00730000111056.h.e	ENSGT00940000158616.k.b	ENSGT00940000155256.d.b.b.b	ENSGT00950000182894.D.f	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT00940000157244.a.a #22	ENSGT00390000007227.a.i	ENSGT00940000160991.b.c.a	ENSGT00390000018560.a.a.a.a.b.j.b	ENSGT00940000171486.B	ENSGT00940000157616.j.a.d	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b.d	ENSGT00390000007776	ENSGT00950000183145.C.n.b
Chinook salmon	MODERN SPECIES	24	aqp10b (ENSOTSG00005003203)	znf687b (ENSOTSG00005003207)	PSMD4 (ENSOTSG00005003223)	ENSOTSG00005003979	ENSOTSG00005003982	ENSOTSG00005003986	ENSOTSG00005003999	ENSOTSG00005004003	ENSOTSG00005004011	lipea (ENSOTSG00005004221)	ENSOTSG00005004222	SLC9A3 (ENSOTSG00005004232)	ago3b (ENSOTSG00005004739)	tekt2 (ENSOTSG00005010547)	usf2 (ENSOTSG00005010551)	LMNA (ENSOTSG00005010591) #22	naxe (ENSOTSG00005010675)	ENSOTSG00005010681	scn1bb (ENSOTSG00005010684)	ENSOTSG00005010687	sall3b (ENSOTSG00005010691)	nfatc1 (ENSOTSG00005010695)	pleca (ENSOTSG00005010762)	nudcd1 (ENSOTSG00005044911)	ENSOTSG00005044912	ENSOTSG00005044915
Coho salmon	MODERN SPECIES	5	PSMD4 (ENSOKIG00005027823)	ENSOKIG00005028158	ENSOKIG00005028173	ENSOKIG00005028182	ENSOKIG00005028198	ENSOKIG00005028203	ENSOKIG00005028241	ENSOKIG00005028318	ENSOKIG00005028326	ENSOKIG00005028344	lipea (ENSOKIG00005028637)	SLC9A3 (ENSOKIG00005028753)	ago3b (ENSOKIG00005029298)	tekt2 (ENSOKIG00005033761)	usf2 (ENSOKIG00005033816)	LMNA (ENSOKIG00005033932) #22	naxe (ENSOKIG00005034017)	ENSOKIG00005034033	SCN1B (ENSOKIG00005034056)	ENSOKIG00005034070	NFATC1 (ENSOKIG00005034093)	ENSOKIG00005034202	pleca (ENSOKIG00005034467)	nudcd1 (ENSOKIG00005036764)	ENSOKIG00005036841	crabp2b (ENSOKIG00005004269)	ciarta (ENSOKIG00005004335)	rprd2a (ENSOKIG00005004354)	celf3a (ENSOKIG00005004421)	cers2a (ENSOKIG00005004568)	CLK2 (ENSOKIG00005004660)
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000049567	ENSOMYG00000048099	ENSOMYG00000063431	ENSOMYG00000052553	ENSOMYG00000076026	ENSOMYG00000059834	ENSOMYG00000028201	ENSOMYG00000008583	lipea (ENSOMYG00000003639)	nhe3b (ENSOMYG00000003588)	ENSOMYG00000006317	ENSOMYG00000065144	ENSOMYG00000049581	ENSOMYG00000063528	ENSOMYG00000070084	ENSOMYG00000006026 #22	ENSOMYG00000011062	ENSOMYG00000057609	ENSOMYG00000069899	ENSOMYG00000028078	ENSOMYG00000070995	ENSOMYG00000042866	ENSOMYG00000064041	ENSOMYG00000057896	ENSOMYG00000005924	ENSOMYG00000070589	ENSOMYG00000048886	ENSOMYG00000068104	ENSOMYG00000005875	ENSOMYG00000061489	ENSOMYG00000053086
Huchen	MODERN SPECIES	410										ENSHHUG00000012609	lipea (ENSHHUG00000012619)	SLC9A3 (ENSHHUG00000012655)	ago3b (ENSHHUG00000012802)	tekt2 (ENSHHUG00000013414)	usf2 (ENSHHUG00000013504)	LMNA (ENSHHUG00000013526) #22	naxe (ENSHHUG00000013600)	ENSHHUG00000013604	scn1bb (ENSHHUG00000013606)	ENSHHUG00000013609	ENSHHUG00000013614	atp9b (ENSHHUG00000013627)	nfatc1 (ENSHHUG00000013733)	ENSHHUG00000013795	ENSHHUG00000013804	ENSHHUG00000013808
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	9	apoea (ENSELUG00000000957)	tomm40l (ENSELUG00000022469)	ENSELUG00000022538	lipea (ENSELUG00000022575)	slc9a3.1 (ENSELUG00000022644)	ENSELUG00000026148	olah (ENSELUG00000000919)	ago3b (ENSELUG00000001774)	tekt2 (ENSELUG00000001777)	ENSELUG00000031183	ENSELUG00000033772	ENSELUG00000001349	scn1bb (ENSELUG00000022489)	naxe (ENSELUG00000022569)	ENSELUG00000028642	LMNA (ENSELUG00000022009) #22	usf2 (ENSELUG00000031688)	si:dkey-211g8.6 (ENSELUG00000026170)	si:dkey-211g8.7 (ENSELUG00000022113)	ENSELUG00000022133	sall3b (ENSELUG00000009541)	atp9b (ENSELUG00000009471)	ENSELUG00000009297	ENSELUG00000009276	nfatc1 (ENSELUG00000010995)	ENSELUG00000030121	slc52a2 (ENSELUG00000018594)	ENSELUG00000018587	ENSELUG00000018576	ENSELUG00000032688	pleca (ENSELUG00000018494)
Northern pike	MODERN SPECIES	200																ENSELUG00000024667 #22	usf2 (ENSELUG00000028496)
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000157244.a.a #22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000157244.a.a #22
Atlantic herring	MODERN SPECIES	13	ENSCHAG00000024285	CLASP1 (ENSCHAG00000024328)	ENSCHAG00000025058	INHBB (ENSCHAG00000025084)	RALB (ENSCHAG00000025088)	ENSCHAG00000025093	ENSCHAG00000025098	ptpn4b (ENSCHAG00000025109)	PTH2R (ENSCHAG00000025146)	mgat5 (ENSCHAG00000025244)	ENSCHAG00000002437	ccnt2b (ENSCHAG00000002533)	ENSCHAG00000002722	GOLT1B (ENSCHAG00000004077)	ENSCHAG00000004095	ENSCHAG00000004364 #22	rnd3a (ENSCHAG00000004399)	mmadhca (ENSCHAG00000004464)	ENSCHAG00000004542	ENSCHAG00000004620	ENSCHAG00000004669	ENSCHAG00000004692	ENSCHAG00000004722	ENSCHAG00000004817	idh3b (ENSCHAG00000005618)	ptpra (ENSCHAG00000006627)	gnrh2 (ENSCHAG00000008228)	klf12a (ENSCHAG00000008249)	ENSCHAG00000008271	KLF5 (ENSCHAG00000008282)	pibf1 (ENSCHAG00000008292)
Osteoglossocephalai	ANCESTRAL SPECIES	27	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106	ENSGT00940000159463 #35	ENSGT00950000182844.b.b.a #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314	ENSGT00940000154996.a.a.a	ENSGT00940000157759
Clupeocephala	ANCESTRAL SPECIES	27	ENSGT00940000165753	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106	ENSGT00940000159463 #35	ENSGT00950000182844.b.b.a #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314	ENSGT00940000154996.a.a.a	ENSGT00940000157759
Otomorpha	ANCESTRAL SPECIES	8	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106	ENSGT00940000159463 #35	ENSGT00950000182844.b.b.a #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314	ENSGT00940000154996.a.a.a	ENSGT00940000157759
Clupeiformes	ANCESTRAL SPECIES	79	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01100000263776	ENSGT00940000167106	ENSGT00940000159463 #35	ENSGT00950000182844.b.b.a #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314	ENSGT00940000154996.a.a.a	ENSGT00940000157759
Atlantic herring	MODERN SPECIES	2	nr2f5 (ENSCHAG00000009093)	ENSCHAG00000008936	rpz2 (ENSCHAG00000008923)	rpz (ENSCHAG00000008914)	ENSCHAG00000008805	rpz6 (ENSCHAG00000008797)	rpz5 (ENSCHAG00000008789)	rpz4 (ENSCHAG00000008787)	tmem176l.4 (ENSCHAG00000008783)	zgc:174938 (ENSCHAG00000008762)	ubqln4 (ENSCHAG00000008716) #18	lamtor2 (ENSCHAG00000008683) #19	rab25b (ENSCHAG00000008626) #20	rab11al (ENSCHAG00000008561)	ENSCHAG00000008553	lmna (ENSCHAG00000008483) #22	ENSCHAG00000008446	ENSCHAG00000008391	gpatch4 (ENSCHAG00000008364)	ENSCHAG00000008348	ENSCHAG00000008339	ENSCHAG00000008333	mef2d (ENSCHAG00000007966) #35	rhbg (ENSCHAG00000006531) #34	hapln2 (ENSCHAG00000006483)	bcan (ENSCHAG00000006421)	ISG20L2 (ENSCHAG00000006406)	mettl25b (ENSCHAG00000006386)	s100a1 (ENSCHAG00000006375)	tlr18 (ENSCHAG00000006361)	si:ch211-113g11.6 (ENSCHAG00000006354)
Denticle herring	MODERN SPECIES	15	mtmr11 (ENSDCDG00000014305)	SV2A (ENSDCDG00000014031)	bola1 (ENSDCDG00000013964)	nr2f5 (ENSDCDG00000013941)	rpz2 (ENSDCDG00000013924)	rpz (ENSDCDG00000013912)	rpz6 (ENSDCDG00000023300)	rpz5 (ENSDCDG00000023298)	rpz4 (ENSDCDG00000023296)	zgc:174938 (ENSDCDG00000023295)	ubqln4 (ENSDCDG00000023261) #18	lamtor2 (ENSDCDG00000023240) #19	rab25b (ENSDCDG00000023191) #20	rab11al (ENSDCDG00000023147)	ENSDCDG00000023146	lmna (ENSDCDG00000023114) #22	ENSDCDG00000023091	gpatch4 (ENSDCDG00000023083)	ENSDCDG00000023081	ENSDCDG00000023078	mef2d (ENSDCDG00000023068) #35	rhbg (ENSDCDG00000023016) #34	hapln2 (ENSDCDG00000023006)	bcan (ENSDCDG00000022997)	ENSDCDG00000022995	ENSDCDG00000022994	mettl25b (ENSDCDG00000022993)	s100a1 (ENSDCDG00000022992)	tlr18 (ENSDCDG00000022990)	si:ch211-113g11.6 (ENSDCDG00000022989)	lingo4b (ENSDCDG00000022988)
Otophysi	ANCESTRAL SPECIES	143	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00390000004215.a.b.b.c.b.d	ENSGT00940000161897.a	ENSGT00940000156930	ENSGT00940000154491.c.a.a	ENSGT00950000183081.b.i.a	ENSGT01040000240444.B.b	ENSGT00950000182914.a.a.a.c.a	ENSGT00940000155784.C.u.a	ENSGT00940000155113.a.a.a	ENSGT00390000000724.c.b.c	ENSGT00940000156554.a	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106	ENSGT00940000159463 #35	ENSGT00950000182844.b.b.a #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314	ENSGT00940000154996.a.a.a	ENSGT00940000157759
Characiphysae	ANCESTRAL SPECIES		ENSGT00940000159581.b.a	ENSGT00390000004215.a.b.b.c.b.d	ENSGT00940000161897.a	ENSGT00940000156930	ENSGT00940000154491.c.a.a	ENSGT00940000154491.c.b	ENSGT00950000183081.b.i.a	ENSGT01040000240444.B.b	ENSGT00950000182914.a.a.a.c.a	ENSGT00940000155784.C.u.a	ENSGT00940000155113.a.a.a	ENSGT00390000000724.c.b.c	ENSGT00940000156554.a	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106	ENSGT00940000159463 #35	ENSGT00950000182844.b.b.a #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314	ENSGT00940000154996.a.a.a	ENSGT00940000157759
Channel catfish	MODERN SPECIES		ptp4a3 (ENSIPUG00000005240)	csnk2a1 (ENSIPUG00000005268)	SCX (ENSIPUG00000005332)	mroh1 (ENSIPUG00000005350)	ENSIPUG00000005537	ENSIPUG00000005547	ENSIPUG00000005558	dgat1b (ENSIPUG00000005568)	GPR20 (ENSIPUG00000005597)	SLC45A4 (ENSIPUG00000005611)	ptk2ab (ENSIPUG00000005669)	ldlrad4b (ENSIPUG00000006109)	fam210ab (ENSIPUG00000006139)	mc5rb (ENSIPUG00000006145)	mc2r (ENSIPUG00000006159)	lmna (ENSIPUG00000006185) #22	pear1 (ENSIPUG00000006288)	gpatch4 (ENSIPUG00000006348)	nes (ENSIPUG00000006413)	mef2d (ENSIPUG00000006444) #35	rhbg (ENSIPUG00000006503) #34	hapln2 (ENSIPUG00000006549)	bcan (ENSIPUG00000006560)	isg20l2 (ENSIPUG00000006645)	Rrnad1 (ENSIPUG00000006657)	s100a1 (ENSIPUG00000006680)	s100a1 (ENSIPUG00000006728)	tlr18 (ENSIPUG00000006741)	si:ch211-113g11.6 (ENSIPUG00000006770)	lingo4b (ENSIPUG00000006831)	ctsk (ENSIPUG00000006846)
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT00940000159581.b.a	ENSGT00390000004215.a.b.b.c.b.d	ENSGT00940000161897.a	ENSGT00940000156930	ENSGT00940000154491.c.a.a	ENSGT00940000154491.c.b	ENSGT00950000183081.b.i.a	ENSGT01040000240444.B.b	ENSGT00950000182914.a.a.a.c.a	ENSGT00940000155784.C.u.a	ENSGT00940000155113.a.a.a	ENSGT00390000000724.c.b.c	ENSGT00940000156554.a	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106	ENSGT00940000159463 #35	ENSGT00950000182844.b.b.a #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314	ENSGT00940000154996.a.a.a	ENSGT00940000157759
Characoidei	ANCESTRAL SPECIES	7	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00390000004215.a.b.b.c.b.d	ENSGT00940000161897.a	ENSGT00940000156930	ENSGT00940000154491.c.b	ENSGT00950000183081.b.i.a	ENSGT01040000240444.B.b	ENSGT00950000182914.a.a.a.c.a	ENSGT00940000155784.C.u.a	ENSGT00940000155113.a.a.a	ENSGT00390000000724.c.b.c	ENSGT00940000156554.a	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106	ENSGT00940000159463 #35	ENSGT00950000182844.b.b.a #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314	ENSGT00940000154996.a.a.a	ENSGT00940000157759
Red-bellied piranha	MODERN SPECIES	702												ldlrad4b (ENSPNAG00000012292)	fam210ab (ENSPNAG00000002194)	mc5rb (ENSPNAG00000012381)	mc2r (ENSPNAG00000012399)	lmna (ENSPNAG00000012476) #22	ENSPNAG00000012509	gpatch4 (ENSPNAG00000012535)	ENSPNAG00000012542	nes (ENSPNAG00000012619)	mef2d (ENSPNAG00000012717) #35
Mexicana tetra	MODERN SPECIES	1	ndrg1b (ENSAMXG00000038707)	PTP4A3 (ENSAMXG00000041350)	csnk2a1 (ENSAMXG00000034564)	SCX (ENSAMXG00000018584)	ENSAMXG00000018592	SCRT1 (ENSAMXG00000042624)	dgat1b (ENSAMXG00000037012)	GPR20 (ENSAMXG00000031984)	SLC45A4 (ENSAMXG00000018626)	DENND3 (ENSAMXG00000018629)	ptk2ab (ENSAMXG00000018637)	ldlrad4b (ENSAMXG00000018643)	fam210ab (ENSAMXG00000018649)	mc5rb (ENSAMXG00000024935)	mc2r (ENSAMXG00000025097)	lmna (ENSAMXG00000018659) #22	ENSAMXG00000018680	gpatch4 (ENSAMXG00000034049)	ENSAMXG00000018698	nes (ENSAMXG00000018712)	mef2d (ENSAMXG00000018717) #35	rhbg (ENSAMXG00000018727) #34	hapln2 (ENSAMXG00000037946)	bcan (ENSAMXG00000018740)	ENSAMXG00000034827	mettl25b (ENSAMXG00000018760)	s100a1 (ENSAMXG00000034897)	tlr18 (ENSAMXG00000018772)	si:ch211-113g11.6 (ENSAMXG00000018778)	lingo4b (ENSAMXG00000025098)	ctsk (ENSAMXG00000018786)
Electric eel	MODERN SPECIES	39	ndrg1b (ENSEEEG00000017216)	PTP4A3 (ENSEEEG00000017232)	csnk2a1 (ENSEEEG00000017246)	SCX (ENSEEEG00000017312)	ENSEEEG00000017328	scrt1b (ENSEEEG00000017828)	dgat1b (ENSEEEG00000017831)	GPR20 (ENSEEEG00000017833)	SLC45A4 (ENSEEEG00000017834)	DENND3 (ENSEEEG00000017835)	ptk2ab (ENSEEEG00000017854)	ldlrad4b (ENSEEEG00000018125)	fam210ab (ENSEEEG00000018128)	mc5rb (ENSEEEG00000018130)	mc2r (ENSEEEG00000018131)	lmna (ENSEEEG00000018134) #22	ENSEEEG00000018143
Cyprinoidei	ANCESTRAL SPECIES	53	ENSGT00940000159581.b.a	ENSGT00390000004215.a.b.b.c.b.d	ENSGT00990000210053	ENSGT00940000161897.a	ENSGT00940000156930	ENSGT00940000154491.c.a.a	ENSGT00950000183081.b.i.a	ENSGT01040000240444.B.b	ENSGT00950000182914.a.a.a.c.a	ENSGT00940000155784.C.u.a	ENSGT00940000155113.a.a.a	ENSGT00390000000724.c.b.c	ENSGT00940000156554.a	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00910000144338	ENSGT00940000155425	ENSGT00570000079224 #32	ENSGT00390000002390.b.e #30	ENSGT00940000154412.B.a	ENSGT00940000158641.a.b	ENSGT00940000163785.a.a.b	ENSGT00390000003488.b.b	ENSGT00940000160002	ENSGT00390000010811	ENSGT00940000158734	ENSGT00390000017503.i	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000155413.d
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	397																ENSGT00940000157244.a.b.a #22	ENSGT00940000155333.B.e	ENSGT00940000155425.ab.a	ENSGT00570000079224.g #32	ENSGT00390000002390.b.e.e #30	ENSGT00940000154412.B.a.c.b	ENSGT00940000158641.a.b.a	ENSGT00940000163785.a.a.b	ENSGT00390000003488.b.b.a	ENSGT00940000160002.q	ENSGT00390000010811.a	ENSGT00940000158734.f	ENSGT00390000017503.i.a	ENSGT01090000260003.a.b.b.a.a.a.b.b.wb.a	ENSGT00940000155413.d.b	ENSGT00390000018130.a.a.a.p
Cyprininae_a	ANCESTRAL SPECIES	181	ENSGT00940000158587.c.a.c	ENSGT00940000159581.b.a.f.a.a	ENSGT00390000004215.a.b.b.c.b.d.l	ENSGT00940000161897.a.b	ENSGT00940000156930.ab	ENSGT00940000154491.c.a.a.a	ENSGT00950000183081.b.i.a.l	ENSGT01040000240444.B.b.j	ENSGT00950000182914.a.a.a.c.a.f	ENSGT00940000155784.C.u.a.a.a	ENSGT00940000155113.a.a.a.b	ENSGT00390000000724.c.b.c.e.b	ENSGT00940000156554.a.h	ENSGT01030000234510.a.a.a.a.a.a.h.a.b	ENSGT01030000234510.a.a.b.f	ENSGT00940000157244.a.b.a #22	ENSGT00940000155333.B.e	ENSGT00940000155425.ab.a	ENSGT00570000079224.g #32	ENSGT00390000002390.b.e.f #30	ENSGT00940000154412.B.a.c.a	ENSGT00940000158641.a.b.b	ENSGT00390000003488.b.b.b	ENSGT00940000160002.r	ENSGT00390000010811.b	ENSGT00940000158734.e	ENSGT00390000017503.i.b	ENSGT01090000260003.a.b.b.a.a.a.b.b.wb.b	ENSGT00940000155413.d.a	ENSGT00390000018130.a.a.a.o	ENSGT00950000183103.d.a.a.e.a
Common carp reference	MODERN SPECIES	2	ENSCCRG00000061748	ENSCCRG00000079857	ENSCCRG00000042495	csnk2a1 (ENSCCRG00000013280)	ENSCCRG00000013274	ENSCCRG00000012824	scrt1b (ENSCCRG00000027533)	dgat1b (ENSCCRG00000050053)	ENSCCRG00000080553	ENSCCRG00000059607	ENSCCRG00000050041	ptk2ab (ENSCCRG00000042172)	ldlrad4b (ENSCCRG00000062199)	fam210ab (ENSCCRG00000035323)	ENSCCRG00000049724	lmna (ENSCCRG00000023524) #22	ENSCCRG00000024580	pdia7 (ENSCCRG00000005732)	cct3 (ENSCCRG00000005632) #32	ENSCCRG00000005900 #30	ENSCCRG00000010934	ENSCCRG00000075497	sema6e (ENSCCRG00000043021)	lysmd1 (ENSCCRG00000057750)	ENSCCRG00000074329	tnfaip8l2b (ENSCCRG00000061296)	ENSCCRG00000076523	tmod4 (ENSCCRG00000082416)	VPS72 (ENSCCRG00000042686)	mcl1b (ENSCCRG00000058644)	hormad1 (ENSCCRG00000042670)
Golden-line barbel	MODERN SPECIES	241												ldlrad4b (ENSSGRG00000046010)	fam210ab (ENSSGRG00000046009)	mc5rb (ENSSGRG00000046008)	mc2r (ENSSGRG00000046006)	lmna (ENSSGRG00000045949) #22	ENSSGRG00000045948	pdia7 (ENSSGRG00000045855)	cct3 (ENSSGRG00000045742) #32	ENSSGRG00000045738 #30	ENSSGRG00000045736	sema6e (ENSSGRG00000045728)	tnfaip8l2b (ENSSGRG00000045725)	lysmd1 (ENSSGRG00000045724)	scnm1 (ENSSGRG00000045723)	tmod4 (ENSSGRG00000045722)	tmod4 (ENSSGRG00000045720)	VPS72 (ENSSGRG00000045719)	mcl1b (ENSSGRG00000045718)	ensab (ENSSGRG00000045717)	hormad1 (ENSSGRG00000045716)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	35	SNIP1 (ENSCARG00000028599)	dnali1 (ENSCARG00000028576)	rspo1 (ENSCARG00000028561)	FHL3 (ENSCARG00000028549)	utp11 (ENSCARG00000028537)	pou3f1 (ENSCARG00000028532)	rragca (ENSCARG00000028527)	GJA9 (ENSCARG00000028523)	rhbdl2 (ENSCARG00000028344)	dgat1b (ENSCARG00000028167)	GPR20 (ENSCARG00000028151)	SLC45A4 (ENSCARG00000028146)	ptk2ab (ENSCARG00000027545)	ldlrad4b (ENSCARG00000027512)	fam210ab (ENSCARG00000027500)	lmna (ENSCARG00000027211) #22	ENSCARG00000027182	cct3 (ENSCARG00000026999) #32	ENSCARG00000026953 #30	ENSCARG00000026939	sema6e (ENSCARG00000026829)	sema6e (ENSCARG00000026749)	tnfaip8l2b (ENSCARG00000026725)	lysmd1 (ENSCARG00000026711)	tmod4 (ENSCARG00000026657)	mcl1b (ENSCARG00000026650)	ensab (ENSCARG00000026641)	onecutl (ENSCARG00000026616)	ENSCARG00000026528	ctsk (ENSCARG00000026490)	lingo4b (ENSCARG00000026483)
Goldfish	MODERN SPECIES	35	cdcp1a (ENSCARG00000013663)	TMEM158 (ENSCARG00000013673)	lars2 (ENSCARG00000013812)	ENSCARG00000017991	ENSCARG00000017998	LIMD1 (ENSCARG00000018013)	mecr (ENSCARG00000018040)	LIN28A (ENSCARG00000018107)	ENSCARG00000018114	yrdc (ENSCARG00000018123)	mtf1 (ENSCARG00000018139)	INPP5B (ENSCARG00000018165)	ZC3H12A (ENSCARG00000018401)	ENSCARG00000018407	ENSCARG00000018418	lmna (ENSCARG00000018430) #22	ENSCARG00000018512	pdia7 (ENSCARG00000018531)	cct3 (ENSCARG00000018570) #32	ENSCARG00000018682 #30	esrp1 (ENSCARG00000018699)	ENSCARG00000018749	RAD54B (ENSCARG00000018765)	gem (ENSCARG00000023140)	cdh17 (ENSCARG00000023162)	pdp1 (ENSCARG00000023252)	trim35-29 (ENSCARG00000023261)	ino80c (ENSCARG00000023270)	GALNT1 (ENSCARG00000023320)	TMEM245 (ENSCARG00000023444)	FRRS1L (ENSCARG00000023491)
Cyprininae	ANCESTRAL SPECIES	28	ENSGT00940000159581.b.a.f.b	ENSGT00390000004215.a.b.b.c.b.d.k	ENSGT00990000210053.a	ENSGT00940000161897.a.a	ENSGT00940000156930.`b	ENSGT00940000154491.c.a.a.b	ENSGT00950000183081.b.i.a.k	ENSGT01040000240444.B.b.i	ENSGT00950000182914.a.a.a.c.a.e	ENSGT00940000155784.C.u.a.a.b	ENSGT00940000155113.a.a.a.a	ENSGT00390000000724.c.b.c.e.a	ENSGT00940000156554.a.g	ENSGT01030000234510.a.a.a.a.a.a.h.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000157244.a.b.b #22	ENSGT00940000155333.B.f	ENSGT00940000155425.ab.b	ENSGT00570000079224.h #32	ENSGT00390000002390.b.e.f #30	ENSGT00940000154412.B.a.c.a	ENSGT00940000158641.a.b.b	ENSGT00390000003488.b.b.b	ENSGT00940000160002.r	ENSGT00390000010811.b
Cyprininae_a	ANCESTRAL SPECIES	7	ENSGT00940000159581.b.a.f.b	ENSGT00390000004215.a.b.b.c.b.d.k	ENSGT00990000210053.a	ENSGT00940000161897.a.a	ENSGT00940000156930.`b	ENSGT00940000154491.c.a.a.b	ENSGT00950000183081.b.i.a.k	ENSGT01040000240444.B.b.i	ENSGT00950000182914.a.a.a.c.a.e	ENSGT00940000155784.C.u.a.a.b	ENSGT00940000155113.a.a.a.a	ENSGT00390000000724.c.b.c.e.a	ENSGT00940000156554.a.g	ENSGT01030000234510.a.a.a.a.a.a.h.a.a	ENSGT01030000234510.a.a.b.e	ENSGT00940000157244.a.b.b #22	ENSGT00940000155333.B.f	ENSGT00940000155425.ab.b	ENSGT00570000079224.h #32	ENSGT00390000002390.b.e.e #30	ENSGT00940000154412.B.a.c.b	ENSGT00940000158641.a.b.a	ENSGT00940000163785.a.a.b	ENSGT00390000003488.b.b.a	ENSGT00940000160002.q	ENSGT00390000010811.a	ENSGT00940000158734.f	ENSGT00390000017503.i.a	ENSGT01090000260003.a.b.b.a.a.a.b.b.wb.a	ENSGT00940000155413.d.b	ENSGT00390000018130.a.a.a.p
Common carp reference	MODERN SPECIES	47	csnk2a1 (ENSCCRG00000045492)	zgc:194210 (ENSCCRG00000045624)	ENSCCRG00000045640	ENSCCRG00000012814	scrt1b (ENSCCRG00000030586)	ENSCCRG00000070623	dgat1b (ENSCCRG00000019769)	ENSCCRG00000081319	ENSCCRG00000019820	ENSCCRG00000019848	ptk2ab (ENSCCRG00000020113)	ldlrad4b (ENSCCRG00000059613)	fam210ab (ENSCCRG00000035348)	mc5rb (ENSCCRG00000079865)	mc2r (ENSCCRG00000035328)	lmna (ENSCCRG00000023255) #22	ENSCCRG00000023214	pdia7 (ENSCCRG00000028167)	cct3 (ENSCCRG00000005446) #32	sema6e (ENSCCRG00000043015)	ENSCCRG00000058386	tnfaip8l2b (ENSCCRG00000064921)	lysmd1 (ENSCCRG00000026581)	scnm1 (ENSCCRG00000078172)	tmod4 (ENSCCRG00000026478)	VPS72 (ENSCCRG00000026457)	mcl1b (ENSCCRG00000026455)	ensab (ENSCCRG00000070332)	hormad1 (ENSCCRG00000049104)	onecutl (ENSCCRG00000049103)	CTSS (ENSCCRG00000025653)
Golden-line barbel	MODERN SPECIES	95	ndrg1b (ENSSGRG00000000652)	PTP4A3 (ENSSGRG00000000656)	csnk2a1 (ENSSGRG00000000675)	zgc:194210 (ENSSGRG00000000722)	ENSSGRG00000000744	scrt1b (ENSSGRG00000005223)	dgat1b (ENSSGRG00000005251)	GPR20 (ENSSGRG00000005946)	SLC45A4 (ENSSGRG00000005950)	DENND3 (ENSSGRG00000005955)	ptk2ab (ENSSGRG00000005999)	ldlrad4b (ENSSGRG00000006600)	fam210ab (ENSSGRG00000006601)	mc5rb (ENSSGRG00000006604)	mc2r (ENSSGRG00000006606)	lmna (ENSSGRG00000006624) #22	ENSSGRG00000007303	pdia7 (ENSSGRG00000007311)	cct3 (ENSSGRG00000007459) #32	ENSSGRG00000007626 #30	ENSSGRG00000007627 #30	ENSSGRG00000007628	ENSSGRG00000007629	ENSSGRG00000007630	sema6e (ENSSGRG00000007636)	tnfaip8l2b (ENSSGRG00000007648)	lysmd1 (ENSSGRG00000007649)	scnm1 (ENSSGRG00000007650)	tmod4 (ENSSGRG00000007651)	VPS72 (ENSSGRG00000007653)	mcl1b (ENSSGRG00000007654)
Goldfish	MODERN SPECIES	7	ndrg1b (ENSCARG00000019635)	ENSCARG00000019685	csnk2a1 (ENSCARG00000019702)	zgc:194210 (ENSCARG00000019755)	SCX (ENSCARG00000019761)	scrt1b (ENSCARG00000019765)	dgat1b (ENSCARG00000019783)	GPR20 (ENSCARG00000019871)	SLC45A4 (ENSCARG00000019877)	DENND3 (ENSCARG00000019891)	ptk2ab (ENSCARG00000019996)	ldlrad4b (ENSCARG00000022590)	fam210ab (ENSCARG00000022601)	mc5rb (ENSCARG00000022612)	mc2r (ENSCARG00000022619)	lmna (ENSCARG00000022635) #22	ENSCARG00000022876	pdia7 (ENSCARG00000022912)	cct3 (ENSCARG00000023453) #32	ENSCARG00000024212 #30	ENSCARG00000024242	sema6e (ENSCARG00000024262)	ENSCARG00000024301	tnfaip8l2b (ENSCARG00000024303)	lysmd1 (ENSCARG00000024317)	scnm1 (ENSCARG00000024326)	VPS72 (ENSCARG00000024344)	tmod4 (ENSCARG00000024418)	ensab (ENSCARG00000024426)	hormad1 (ENSCARG00000024429)	onecutl (ENSCARG00000024442)
Zebrafish	MODERN SPECIES	7	csnk2a1 (ENSDARG00000002082)	zgc:194210 (ENSDARG00000073799)	SCX (ENSDARG00000011635)	ENSDARG00000016573	scrt1b (ENSDARG00000040214)	dgat1b (ENSDARG00000054914)	GPR20 (ENSDARG00000077427)	ENSDARG00000019585	SLC45A4 (ENSDARG00000077326)	ENSDARG00000013153	ptk2ab (ENSDARG00000004672)	ldlrad4b (ENSDARG00000054941)	fam210ab (ENSDARG00000040186)	mc5rb (ENSDARG00000054946)	mc2r (ENSDARG00000054949)	lmna (ENSDARG00000013415) #22	ENSDARG00000060753	pdia7 (ENSDARG00000014015)	cct3 (ENSDARG00000016173) #32	ENSDARG00000076861 #30	ENSDARG00000112961	sema6e (ENSDARG00000000189)	tnfaip8l2b (ENSDARG00000046148)	lysmd1 (ENSDARG00000054789)	scnm1 (ENSDARG00000003027)	tmod4 (ENSDARG00000020890)	VPS72 (ENSDARG00000088567)	mcl1b (ENSDARG00000008363)	ensab (ENSDARG00000061644)	hormad1 (ENSDARG00000040254)	onecutl (ENSDARG00000040253)
Euteleosteomorpha	ANCESTRAL SPECIES	13	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000169377	ENSGT00940000159463.n.a #35	ENSGT00950000182844.b.b.a #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314	ENSGT00940000154996.a.a.a	ENSGT00940000157759
Acanthomorphata	ANCESTRAL SPECIES	34	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00990000205959	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b
Carangaria	ANCESTRAL SPECIES	1	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Carangaria_A	ANCESTRAL SPECIES	27	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480
Seriola	ANCESTRAL SPECIES	76	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181495	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480
Greater amberjack	MODERN SPECIES	44	ENSSDUG00000006116	ENSSDUG00000006124	rpz (ENSSDUG00000006138)	rpz6 (ENSSDUG00000006147)	rpz5 (ENSSDUG00000006159)	rpz4 (ENSSDUG00000006166)	ENSSDUG00000006170	ENSSDUG00000006180	ENSSDUG00000006200	zgc:174938 (ENSSDUG00000006207)	ubqln4 (ENSSDUG00000006235) #18	lamtor2 (ENSSDUG00000006243) #19	rab25b (ENSSDUG00000006260) #20	rab11al (ENSSDUG00000006278)	ENSSDUG00000006298	lmna (ENSSDUG00000006311) #22	ENSSDUG00000006373	gpatch4 (ENSSDUG00000006583)	ENSSDUG00000006598	ENSSDUG00000006612	tspan13a (ENSSDUG00000006625)	bag6 (ENSSDUG00000006651)	ENSSDUG00000006707	glrx3 (ENSSDUG00000006716)	ENSSDUG00000006728	ENSSDUG00000006743	tnfb (ENSSDUG00000006756)	GABBR1 (ENSSDUG00000006779)	ENSSDUG00000006900	sh3bp5la (ENSSDUG00000006905)	mgat1a (ENSSDUG00000006924)
Yellowtail amberjack	MODERN SPECIES	2757	bola1 (ENSSLDG00000011888)	nr2f5 (ENSSLDG00000011902)	ENSSLDG00000011925	rpz (ENSSLDG00000011962)	ENSSLDG00000011974	rpz5 (ENSSLDG00000011992)	rpz4 (ENSSLDG00000011999)	ENSSLDG00000012016	ENSSLDG00000012048	ENSSLDG00000012058	zgc:174938 (ENSSLDG00000012070)	ubqln4 (ENSSLDG00000012080) #18	rab25b (ENSSLDG00000012091) #20	rab11al (ENSSLDG00000012116)	ENSSLDG00000012129	lmna (ENSSLDG00000012145) #22	ENSSLDG00000012240	gpatch4 (ENSSLDG00000012365)	ENSSLDG00000012383	tspan13a (ENSSLDG00000012407)	bag6 (ENSSLDG00000012455)	ENSSLDG00000012553	glrx3 (ENSSLDG00000012568)	ENSSLDG00000012579	ENSSLDG00000012591	tnfb (ENSSLDG00000012604)	GABBR1 (ENSSLDG00000012634)	sh3bp5la (ENSSLDG00000012689)	mgat1a (ENSSLDG00000012708)	rnf183 (ENSSLDG00000012722)	dhx16 (ENSSLDG00000012742)
Barramundi perch	MODERN SPECIES	104	ENSLCAG00010001426	rpz (ENSLCAG00010001429)	rpz6 (ENSLCAG00010001431)	rpz5 (ENSLCAG00010001433)	rpz4 (ENSLCAG00010001434)	ENSLCAG00010001436	ENSLCAG00010001441	ENSLCAG00010001444	ENSLCAG00010001445	zgc:174938 (ENSLCAG00010001449)	ubqln4 (ENSLCAG00010001452) #18	lamtor2 (ENSLCAG00010001456) #19	rab25b (ENSLCAG00010001467) #20	rab11al (ENSLCAG00010001475)	ENSLCAG00010001496	lmna (ENSLCAG00010001534) #22	ENSLCAG00010001595	gpatch4 (ENSLCAG00010001603)	ENSLCAG00010001606	ENSLCAG00010001609	tspan13a (ENSLCAG00010001613)	bag6 (ENSLCAG00010001641)	glrx3 (ENSLCAG00010001678)	ENSLCAG00010001680	ENSLCAG00010001682	tnfb (ENSLCAG00010001689)	GABBR1 (ENSLCAG00010001724)	sh3bp5la (ENSLCAG00010001787)	mgat1a (ENSLCAG00010001792)	rnf183 (ENSLCAG00010001794)	dhx16 (ENSLCAG00010001827)
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Turbot	MODERN SPECIES		pla2g3 (ENSSMAG00000010333)	ENSSMAG00000015914	pitpnb (ENSSMAG00000015998)	ENSSMAG00000016014	ENSSMAG00000016058	tor4aa (ENSSMAG00000016098)	ENSSMAG00000016105	ENSSMAG00000027216	ENSSMAG00000016129	ubqln4 (ENSSMAG00000016169) #18	zgc:174938 (ENSSMAG00000016164)	lamtor2 (ENSSMAG00000016176) #19	rab25b (ENSSMAG00000016183) #20	rab11al (ENSSMAG00000016206)	ENSSMAG00000016216	LMNA (ENSSMAG00000016221) #22	ENSSMAG00000016239	ENSSMAG00000016329	ENSSMAG00000016340	ENSSMAG00000016351	tspan13a (ENSSMAG00000016378)	bag6 (ENSSMAG00000016500)	ENSSMAG00000016524	ENSSMAG00000016541	ENSSMAG00000016548	TNF (ENSSMAG00000016564)	ENSSMAG00000016587	sh3bp5la (ENSSMAG00000016628)	mgat1a (ENSSMAG00000016639)	ENSSMAG00000033739	rnf183 (ENSSMAG00000018734)
Tongue sole	MODERN SPECIES	4	otud7b (ENSCSEG00000011851)	rbm8a (ENSCSEG00000011865)	ENSCSEG00000011878	ENSCSEG00000011891	nr2f5 (ENSCSEG00000011922)	ENSCSEG00000011928	rpz (ENSCSEG00000011938)	rpz6 (ENSCSEG00000011944)	rpz5 (ENSCSEG00000011948)	rpz4 (ENSCSEG00000011950)	tmem176l.4 (ENSCSEG00000011957)	lamtor2 (ENSCSEG00000011971) #19	rab25b (ENSCSEG00000011982) #20	rab11al (ENSCSEG00000011996)	ENSCSEG00000012003	lmna (ENSCSEG00000012011) #22	ENSCSEG00000012025	gpatch4 (ENSCSEG00000012030)	bag6 (ENSCSEG00000012039)	glrx3 (ENSCSEG00000012085)	etsrp (ENSCSEG00000012087)	fli1rs (ENSCSEG00000012100)	ENSCSEG00000012120	dhx16 (ENSCSEG00000012134)	rnf183 (ENSCSEG00000012189)	ENSCSEG00000012198	mgat1a (ENSCSEG00000012203)	sh3bp5la (ENSCSEG00000012206)	ENSCSEG00000012218	GABBR1 (ENSCSEG00000012228)	tnfb (ENSCSEG00000012247)
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480
Zig-zag eel	MODERN SPECIES	7	SV2A (ENSMAMG00000010430)	bola1 (ENSMAMG00000010420)	nr2f5 (ENSMAMG00000010413)	ENSMAMG00000027679	rpz (ENSMAMG00000024469)	rpz6 (ENSMAMG00000010377)	rpz5 (ENSMAMG00000010370)	rpz4 (ENSMAMG00000010365)	ENSMAMG00000010351	ENSMAMG00000010325	zgc:174938 (ENSMAMG00000010322)	lamtor2 (ENSMAMG00000025086) #19	rab25b (ENSMAMG00000010297) #20	rab11al (ENSMAMG00000010278)	ENSMAMG00000010269	LMNA (ENSMAMG00000010224) #22	ENSMAMG00000010170	ENSMAMG00000010128	ENSMAMG00000010114	ENSMAMG00000010151	bag6 (ENSMAMG00000010081)	ENSMAMG00000010064	ENSMAMG00000010046	ENSMAMG00000010036	tnfb (ENSMAMG00000010016)	ENSMAMG00000009911	sh3bp5la (ENSMAMG00000009878)	mgat1a (ENSMAMG00000009866)	rnf183 (ENSMAMG00000027845)	dhx16 (ENSMAMG00000009784)	ppt2a.2 (ENSMAMG00000009775)
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480
Siamese fighting fish	MODERN SPECIES	7	nr2f5 (ENSBSLG00000019234)	ENSBSLG00000019220	rpz (ENSBSLG00000019204)	rpz6 (ENSBSLG00000019201)	rpz5 (ENSBSLG00000019197)	rpz4 (ENSBSLG00000019195)	ENSBSLG00000019187	ENSBSLG00000019170	ENSBSLG00000019166	ENSBSLG00000019161	zgc:174938 (ENSBSLG00000019156)	lamtor2 (ENSBSLG00000019151) #19	rab25b (ENSBSLG00000019118) #20	rab11al (ENSBSLG00000019078)	ENSBSLG00000019060	lmna (ENSBSLG00000018857) #22	ENSBSLG00000018779	gpatch4 (ENSBSLG00000018588)	ENSBSLG00000018563	ENSBSLG00000018551	tspan13a (ENSBSLG00000018453)	glrx3 (ENSBSLG00000018428)	ENSBSLG00000018418	ENSBSLG00000018408	bag6 (ENSBSLG00000018200)	tnfb (ENSBSLG00000017875)	GABBR1 (ENSBSLG00000016851)	sh3bp5la (ENSBSLG00000016546)	mgat1a (ENSBSLG00000016544)	rnf183 (ENSBSLG00000016543)	dhx16 (ENSBSLG00000016167)
Climbing perch	MODERN SPECIES	7	nr2f5 (ENSATEG00000005947)	ENSATEG00000005961	rpz (ENSATEG00000005967)	rpz6 (ENSATEG00000005973)	rpz5 (ENSATEG00000005981)	rpz4 (ENSATEG00000006002)	ENSATEG00000006009	ENSATEG00000006066	ENSATEG00000006075	ENSATEG00000006083	zgc:174938 (ENSATEG00000006093)	lamtor2 (ENSATEG00000006099) #19	rab25b (ENSATEG00000006124) #20	rab11al (ENSATEG00000006156)	ENSATEG00000006186	LMNA (ENSATEG00000006201) #22	ENSATEG00000006264	ENSATEG00000006359	ENSATEG00000006370	tspan13a (ENSATEG00000006379)	bag6 (ENSATEG00000006414)	ENSATEG00000028304	ENSATEG00000027255	ENSATEG00000006426	tnfb (ENSATEG00000006438)	ENSATEG00000006492	sh3bp5la (ENSATEG00000006630)	mgat1a (ENSATEG00000006650)	rnf183 (ENSATEG00000006657)	dhx16 (ENSATEG00000006665)	ppt2a.2 (ENSATEG00000006774)
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00940000181991	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b
Ballan wrasse	MODERN SPECIES	219	GABBR1 (ENSLBEG00000017055)	tnfb (ENSLBEG00000016956)	ENSLBEG00000016944	glrx3 (ENSLBEG00000016920)	ENSLBEG00000016899	bag6 (ENSLBEG00000016665)	tspan13a (ENSLBEG00000016592)	ENSLBEG00000016567	ENSLBEG00000016540	ENSLBEG00000016514	ubqln4 (ENSLBEG00000016483) #18	lamtor2 (ENSLBEG00000016466) #19	rab25b (ENSLBEG00000016446) #20	rab11al (ENSLBEG00000016417)	ENSLBEG00000016402	lmna (ENSLBEG00000016348) #22	ENSLBEG00000016316	gpatch4 (ENSLBEG00000016296)	ENSLBEG00000016277	ENSLBEG00000016253	ENSLBEG00000016237	ENSLBEG00000016222	ENSLBEG00000016203	ENSLBEG00000016182	rpz4 (ENSLBEG00000016167)	rpz5 (ENSLBEG00000016154)	rpz5 (ENSLBEG00000016141)	rpz6 (ENSLBEG00000016124)	rpz (ENSLBEG00000016105)	ENSLBEG00000016085	nr2f5 (ENSLBEG00000016060)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480
Perciformes	ANCESTRAL SPECIES	3	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000170682	ENSGT00940000167095.B	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01100000263776	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480	ENSGT00940000155779.a.a	ENSGT00980000198705	ENSGT00940000169011
Stickleback	MODERN SPECIES	19	nr2f5 (ENSGACG00000013191)	ENSGACG00000013194	ENSGACG00000013202	ENSGACG00000013206	rpz (ENSGACG00000013209)	rpz6 (ENSGACG00000013211)	ENSGACG00000013214	rpz4 (ENSGACG00000013217)	tmem176l.4 (ENSGACG00000013220)	zgc:174938 (ENSGACG00000013227)	ubqln4 (ENSGACG00000013230) #18	lamtor2 (ENSGACG00000013237) #19	rab25b (ENSGACG00000013249) #20	rab11al (ENSGACG00000013259)	ENSGACG00000013282	lmna (ENSGACG00000013285) #22	ENSGACG00000013308	gpatch4 (ENSGACG00000013318)	ENSGACG00000013326	ENSGACG00000013327	tspan13a (ENSGACG00000013330)	bag6 (ENSGACG00000013337)	tnfb (ENSGACG00000013372)	GABBR1 (ENSGACG00000013381)	sh3bp5la (ENSGACG00000013391)	dnali1 (ENSGACG00000013396)	lingo4b (ENSGACG00000013398)	ctsk (ENSGACG00000013402)	ctss2.1 (ENSGACG00000013470)	onecutl (ENSGACG00000013501)	hormad1 (ENSGACG00000013504)
Lumpfish	MODERN SPECIES	17	ENSCLMG00005019434	ENSCLMG00005019435	rpz (ENSCLMG00005019437)	rpz6 (ENSCLMG00005012078)	rpz5 (ENSCLMG00005012079)	rpz4 (ENSCLMG00005012081)	rpz4 (ENSCLMG00005012082)	rpz4 (ENSCLMG00005012083)	tmem176l.4 (ENSCLMG00005012084)	zgc:174938 (ENSCLMG00005012085)	ubqln4 (ENSCLMG00005012086) #18	lamtor2 (ENSCLMG00005012087) #19	rab25b (ENSCLMG00005012088) #20	rab11al (ENSCLMG00005012089)	ENSCLMG00005012129	lmna (ENSCLMG00005012130) #22	ENSCLMG00005012134	gpatch4 (ENSCLMG00005012325)	ENSCLMG00005012326	tspan13a (ENSCLMG00005012327)	bag6 (ENSCLMG00005012328)	ENSCLMG00005012329	ENSCLMG00005012330	ENSCLMG00005012331	GABBR1 (ENSCLMG00005012336)	sh3bp5la (ENSCLMG00005012425)	mgat1a (ENSCLMG00005012427)	rnf183 (ENSCLMG00005012428)	dhx16 (ENSCLMG00005012447)	ppt2a.2 (ENSCLMG00005013700)	ENSCLMG00005013721
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480
Pike perch	MODERN SPECIES	50	rpz6 (ENSSLUG00000011826)	rpz5 (ENSSLUG00000011829)	rpz4 (ENSSLUG00000011830)	ENSSLUG00000011831	ENSSLUG00000011833	ENSSLUG00000011835	ENSSLUG00000011840	ENSSLUG00000011848	ENSSLUG00000011884	ENSSLUG00000011887	ubqln4 (ENSSLUG00000011892) #18	lamtor2 (ENSSLUG00000011893) #19	rab25b (ENSSLUG00000011900) #20	rab11al (ENSSLUG00000011904)	ENSSLUG00000011910	lmna (ENSSLUG00000011940) #22	ENSSLUG00000012071	ENSSLUG00000012081	gpatch4 (ENSSLUG00000012088)
Channel bull blenny	MODERN SPECIES	7	SV2A (ENSCGOG00000005197)	bola1 (ENSCGOG00000005186)	nr2f5 (ENSCGOG00000005173)	ENSCGOG00000005170	rpz (ENSCGOG00000005167)	rpz6 (ENSCGOG00000005164)	rpz5 (ENSCGOG00000005163)	rpz4 (ENSCGOG00000005162)	tmem176l.4 (ENSCGOG00000005158)	zgc:174938 (ENSCGOG00000005156)	ubqln4 (ENSCGOG00000005155) #18	lamtor2 (ENSCGOG00000005147) #19	rab25b (ENSCGOG00000005132) #20	rab11al (ENSCGOG00000005129)	ENSCGOG00000005128	lmna (ENSCGOG00000004574) #22	gpatch4 (ENSCGOG00000004533)	ENSCGOG00000004528	ENSCGOG00000004525	tspan13a (ENSCGOG00000004522)	bag6 (ENSCGOG00000004255)	glrx3 (ENSCGOG00000004243)	ENSCGOG00000004238	tnfb (ENSCGOG00000004212)	GABBR1 (ENSCGOG00000002486)	sh3bp5la (ENSCGOG00000002327)	mgat1a (ENSCGOG00000002315)	rnf183 (ENSCGOG00000002312)	dhx16 (ENSCGOG00000001992)	ppt2a.2 (ENSCGOG00000001885)	ENSCGOG00000001879
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00510000049239.b.b	ENSGT00990000204623	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480	ENSGT00940000155779.a.a	ENSGT00980000198705	ENSGT00940000169011
Gilthead seabream	MODERN SPECIES	8	rpz6 (ENSSAUG00010014043)	rpz5 (ENSSAUG00010014040)	rpz4 (ENSSAUG00010014038)	ENSSAUG00010014033	ENSSAUG00010014032	ENSSAUG00010013986	ENSSAUG00010013958	ENSSAUG00010013942	ENSSAUG00010013933	zgc:174938 (ENSSAUG00010013927)	ENSSAUG00010013924 #18	lamtor2 (ENSSAUG00010013916) #19	rab25b (ENSSAUG00010013906) #20	rab11al (ENSSAUG00010013897)	ENSSAUG00010013894	lmna (ENSSAUG00010013671) #22	ENSSAUG00010013666	gpatch4 (ENSSAUG00010013661)	ENSSAUG00010013659	ENSSAUG00010013658	ENSSAUG00010013657	ENSSAUG00010013656	tspan13a (ENSSAUG00010013655)	bag6 (ENSSAUG00010013653)	glrx3 (ENSSAUG00010013651)	ENSSAUG00010013650	ENSSAUG00010013648	tnfb (ENSSAUG00010013647)	GABBR1 (ENSSAUG00010012260)	sh3bp5la (ENSSAUG00010012232)	mgat1a (ENSSAUG00010012229)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000167095.B	ENSGT00940000163828.b.b.d	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480	ENSGT00940000155779.a.a	ENSGT00980000198705	ENSGT00940000169011
European seabass	MODERN SPECIES	6	nr2f5 (ENSDLAG00005009248)	ENSDLAG00005009259	ENSDLAG00005034002	ENSDLAG00005035037	rpz6 (ENSDLAG00005028300)	rpz5 (ENSDLAG00005027375)	rpz4 (ENSDLAG00005026708)	ENSDLAG00005009289	ENSDLAG00005009296	ENSDLAG00005029399	zgc:174938 (ENSDLAG00005014746)	ENSDLAG00005026442 #18	lamtor2 (ENSDLAG00005009320) #19	rab25b (ENSDLAG00005009338) #20	ENSDLAG00005033062	LMNA (ENSDLAG00005009437) #22	ENSDLAG00005009606	ENSDLAG00005035098	ENSDLAG00005009616	tspan13a (ENSDLAG00005009625)	bag6 (ENSDLAG00005009642)	ENSDLAG00005009690	ENSDLAG00005009704	ENSDLAG00005009718	tnfb (ENSDLAG00005009729)	ENSDLAG00005000313	rnf183 (ENSDLAG00005000783)	rnf183 (ENSDLAG00005029371)	dhx16 (ENSDLAG00005000817)	ppt2a.2 (ENSDLAG00005001010)	ENSDLAG00005001025
Large yellow croaker	MODERN SPECIES	484	rpz (ENSLCRG00005001318)	rpz6 (ENSLCRG00005001317)	rpz5 (ENSLCRG00005001315)	rpz4 (ENSLCRG00005001314)	ENSLCRG00005001306	ENSLCRG00005001299	ENSLCRG00005001297	ENSLCRG00005001292	ENSLCRG00005001283	zgc:174938 (ENSLCRG00005001280)	ENSLCRG00005001279 #18	lamtor2 (ENSLCRG00005001275) #19	rab25b (ENSLCRG00005001267) #20	ENSLCRG00005001266	rab11al (ENSLCRG00005001210)	lmna (ENSLCRG00005001196) #22	ENSLCRG00005000883	gpatch4 (ENSLCRG00005000831)	ENSLCRG00005000821	ENSLCRG00005000814	ENSLCRG00005000792	tspan13a (ENSLCRG00005000782)	glrx3 (ENSLCRG00005000772)	ENSLCRG00005000763	ENSLCRG00005000756	bag6 (ENSLCRG00005000687)	tnfb (ENSLCRG00005000649)	GABBR1 (ENSLCRG00005015709)	sh3bp5la (ENSLCRG00005015502)	mgat1a (ENSLCRG00005015501)	rnf183 (ENSLCRG00005015496)
Tetraodontidae	ANCESTRAL SPECIES	203												ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B
Fugu	MODERN SPECIES	19	LIN28A (ENSTRUG00000026738)	mecr (ENSTRUG00000027274)	smpdl3b (ENSTRUG00000006324)	rpa2 (ENSTRUG00000025205)	ENSTRUG00000030776	psmc4 (ENSTRUG00000006577)	ENSTRUG00000027040	ENSTRUG00000030194	zp3d.2 (ENSTRUG00000023387)	fli1rs (ENSTRUG00000007024)	etsrp (ENSTRUG00000007420)	lamtor2 (ENSTRUG00000026694) #19	rab25b (ENSTRUG00000007504) #20	rab11al (ENSTRUG00000007556)	ENSTRUG00000007796	lmna (ENSTRUG00000007840) #22	ENSTRUG00000033210	ENSTRUG00000008219	ENSTRUG00000028279	scn1ba (ENSTRUG00000008725)	ENSTRUG00000008863	si:ch211-225p5.8 (ENSTRUG00000009146)	ENSTRUG00000026781	dnajc28 (ENSTRUG00000009179)	ENSTRUG00000029130	lsr (ENSTRUG00000009199)	mag (ENSTRUG00000009367)	ENSTRUG00000002774	ENSTRUG00000020194	ENSTRUG00000009515	ethe1 (ENSTRUG00000009587)
Tetraodon	MODERN SPECIES	26	EIF4A1 (ENSTNIG00000004408)	ENSTNIG00000004413	ENSTNIG00000004416	gria2b (ENSTNIG00000004419)	ENSTNIG00000004425	ENSTNIG00000004426	ENSTNIG00000012931	ENSTNIG00000004444	ZNF608 (ENSTNIG00000004448)	CEP120 (ENSTNIG00000004449)	PRDM6 (ENSTNIG00000004450)	frem2b (ENSTNIG00000004462)	ENSTNIG00000004465	ENSTNIG00000004472	ENSTNIG00000004473	lmna (ENSTNIG00000004474) #22	ENSTNIG00000004475	ENSTNIG00000004477	tent4b (ENSTNIG00000004479)	ENSTNIG00000000628	ENSTNIG00000004480	esd (ENSTNIG00000004482)	ENSTNIG00000000864	ift74 (ENSTNIG00000004490)	ENSTNIG00000003839	HIVEP1 (ENSTNIG00000004491)	ENSTNIG00000004492	fitm1l (ENSTNIG00000004498)	trnau1apb (ENSTNIG00000000916)	ENSTNIG00000004499	znhit1 (ENSTNIG00000004500)
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Pomacentridae	ANCESTRAL SPECIES	25	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.g.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Clown anemonefish	MODERN SPECIES	1684	fli1rs (ENSAOCG00000015988)	zp3d.2 (ENSAOCG00000015941)	ENSAOCG00000015931	ENSAOCG00000015915	rpz (ENSAOCG00000015876)	rpz6 (ENSAOCG00000015859)	rpz5 (ENSAOCG00000002458)	rpz4 (ENSAOCG00000015835)	ENSAOCG00000001096	ENSAOCG00000015765	zgc:174938 (ENSAOCG00000015745)	lamtor2 (ENSAOCG00000015735) #19	rab25b (ENSAOCG00000015713) #20	rab11al (ENSAOCG00000015678)	ENSAOCG00000015646	lmna (ENSAOCG00000015626) #22	ENSAOCG00000001078	gpatch4 (ENSAOCG00000015494)	ENSAOCG00000015459	ENSAOCG00000015442	tspan13a (ENSAOCG00000015420)
Orange clownfish	MODERN SPECIES	21	etsrp (ENSAPEG00000021871)	fli1rs (ENSAPEG00000021912)	ENSAPEG00000021949	ENSAPEG00000021957	rpz (ENSAPEG00000021978)	rpz6 (ENSAPEG00000021984)	rpz5 (ENSAPEG00000021996)	rpz4 (ENSAPEG00000022000)	ENSAPEG00000022010	ENSAPEG00000022040	zgc:174938 (ENSAPEG00000022068)	lamtor2 (ENSAPEG00000022080) #19	rab25b (ENSAPEG00000022106) #20	rab11al (ENSAPEG00000022135)	ENSAPEG00000022160	lmna (ENSAPEG00000022176) #22	ENSAPEG00000022213	gpatch4 (ENSAPEG00000022243)	ENSAPEG00000022257	ENSAPEG00000022274	tspan13a (ENSAPEG00000022280)	bag6 (ENSAPEG00000022296)	glrx3 (ENSAPEG00000022313)	ENSAPEG00000022323	ENSAPEG00000022341	ENSAPEG00000022349	tnfb (ENSAPEG00000022358)	GABBR1 (ENSAPEG00000022372)	ENSAPEG00000022418	sh3bp5la (ENSAPEG00000022428)	mgat1a (ENSAPEG00000022450)
Spiny chromis	MODERN SPECIES	356											zgc:174938 (ENSAPOG00000008162)	lamtor2 (ENSAPOG00000008180) #19	rab25b (ENSAPOG00000008216) #20	rab11al (ENSAPOG00000008251)	ENSAPOG00000008262	lmna (ENSAPOG00000008317) #22	ENSAPOG00000008403	gpatch4 (ENSAPOG00000008436)	ENSAPOG00000008444	ENSAPOG00000008476	tspan13a (ENSAPOG00000008502)	bag6 (ENSAPOG00000008519)	glrx3 (ENSAPOG00000008544)	ENSAPOG00000008558	ENSAPOG00000008580	tnfb (ENSAPOG00000008608)	GABBR1 (ENSAPOG00000008685)	sh3bp5la (ENSAPOG00000008737)	mgat1a (ENSAPOG00000008749)	rnf183 (ENSAPOG00000008763)	dhx16 (ENSAPOG00000008825)
Bicolor damselfish	MODERN SPECIES	805					rpz4 (ENSSPAG00000012244)	ENSSPAG00000012224	ENSSPAG00000012152	ENSSPAG00000012136	ENSSPAG00000012106	ENSSPAG00000012102	zgc:174938 (ENSSPAG00000012087)	lamtor2 (ENSSPAG00000012076) #19	rab25b (ENSSPAG00000012060) #20	rab11al (ENSSPAG00000012044)	ENSSPAG00000012030	lmna (ENSSPAG00000011978) #22	ENSSPAG00000011767	gpatch4 (ENSSPAG00000011683)	ENSSPAG00000011667
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.h.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Midas cichlid	MODERN SPECIES	872	nr2f5 (ENSACIG00000017556)	ENSACIG00000017542	rpz (ENSACIG00000017536)	rpz6 (ENSACIG00000017530)	rpz5 (ENSACIG00000017523)	ENSACIG00000017516	rpz4 (ENSACIG00000017512)	ENSACIG00000017497	ENSACIG00000017475	ENSACIG00000017450	zgc:174938 (ENSACIG00000017433)	lamtor2 (ENSACIG00000017426) #19	rab25b (ENSACIG00000017414) #20	rab11al (ENSACIG00000017403)	ENSACIG00000017394	lmna (ENSACIG00000017374) #22	ENSACIG00000017333	ENSACIG00000017309
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00940000164178.s.b	ENSGT00510000051675.g.d	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Nile tilapia	MODERN SPECIES	2	ENSONIG00000032560	ENSONIG00000002296	ENSONIG00000040641	ENSONIG00000038901	ENSONIG00000019993	ENSONIG00000027125	ENSONIG00000002291	ENSONIG00000035785	ENSONIG00000002289	ENSONIG00000037024	zgc:174938 (ENSONIG00000002286)	lamtor2 (ENSONIG00000002285) #19	rab25b (ENSONIG00000002284) #20	rab11al (ENSONIG00000002281)	ENSONIG00000002279	lmna (ENSONIG00000002271) #22	ENSONIG00000002264	gpatch4 (ENSONIG00000030651)	ENSONIG00000002260	ENSONIG00000002258	tspan13a (ENSONIG00000002257)	bag6 (ENSONIG00000002253)	glrx3 (ENSONIG00000020845)	ENSONIG00000042885	ENSONIG00000034719	tnfb (ENSONIG00000002250)	GABBR1 (ENSONIG00000002243)	ENSONIG00000034000	sh3bp5la (ENSONIG00000002241)	mgat1a (ENSONIG00000002240)	rnf183 (ENSONIG00000039907)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Haplochromini_A	ANCESTRAL SPECIES	27	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.b	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.b	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT01100000264191	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B	ENSGT00940000158480
Zebra mbuna	MODERN SPECIES	1093	pogzb (ENSMZEG00005017633)	selenbp1 (ENSMZEG00005017617)	ENSMZEG00005017611	ENSMZEG00005017604	ENSMZEG00005017597	ENSMZEG00005017591	ENSMZEG00005017582	ENSMZEG00005017580	ENSMZEG00005017568	ENSMZEG00005017537	zgc:174938 (ENSMZEG00005017527)	lamtor2 (ENSMZEG00005017526) #19	rab25b (ENSMZEG00005017522) #20	rab11al (ENSMZEG00005017514)	ENSMZEG00005017507	lmna (ENSMZEG00005017491) #22	ENSMZEG00005017469	gpatch4 (ENSMZEG00005017452)	ENSMZEG00005017441	ENSMZEG00005017437	tspan13a (ENSMZEG00005017429)	bag6 (ENSMZEG00005017413)	glrx3 (ENSMZEG00005017408)	ENSMZEG00005017397	ENSMZEG00005017394	tnfb (ENSMZEG00005017389)	GABBR1 (ENSMZEG00005017378)	ENSMZEG00005017367	rpp25l (ENSMZEG00005017361)	ENSMZEG00005017358	ccr6a (ENSMZEG00005017355)
Eastern happy	MODERN SPECIES	2	rpz (ENSACLG00000009741)	rpz6 (ENSACLG00000009746)	rpz5 (ENSACLG00000009751)	rpz4 (ENSACLG00000009754)	ENSACLG00000009764	ENSACLG00000010177	ENSACLG00000010200	ENSACLG00000010211	ENSACLG00000010218	ENSACLG00000010229	zgc:174938 (ENSACLG00000010243)	lamtor2 (ENSACLG00000010245) #19	rab25b (ENSACLG00000010251) #20	rab11al (ENSACLG00000010268)	ENSACLG00000010278	lmna (ENSACLG00000010359) #22	ENSACLG00000010393	gpatch4 (ENSACLG00000010456)	ENSACLG00000010509	ENSACLG00000010519	tspan13a (ENSACLG00000010530)	bag6 (ENSACLG00000010554)	glrx3 (ENSACLG00000010585)	ENSACLG00000010600	ENSACLG00000010614	tnfb (ENSACLG00000010621)	GABBR1 (ENSACLG00000010781)	sh3bp5la (ENSACLG00000010869)	mgat1a (ENSACLG00000010896)	rnf183 (ENSACLG00000010912)	dhx16 (ENSACLG00000010932)
P. nyererei	MODERN SPECIES	588						ENSPNYG00000018034	ENSPNYG00000018066	ENSPNYG00000018106	ENSPNYG00000018119	ENSPNYG00000018154	zgc:174938 (ENSPNYG00000018177)	lamtor2 (ENSPNYG00000018197) #19	rab25b (ENSPNYG00000018214) #20	rab11al (ENSPNYG00000018244)	ENSPNYG00000018270	lmna (ENSPNYG00000018288) #22	ENSPNYG00000018351	gpatch4 (ENSPNYG00000018461)	ENSPNYG00000018521	tspan13a (ENSPNYG00000018549)	bag6 (ENSPNYG00000018572)	glrx3 (ENSPNYG00000018588)	ENSPNYG00000018609	ENSPNYG00000018635	tnfb (ENSPNYG00000018642)	GABBR1 (ENSPNYG00000018663)	sh3bp5la (ENSPNYG00000018707)	mgat1a (ENSPNYG00000018728)	rnf183 (ENSPNYG00000018739)	dhx16 (ENSPNYG00000018755)	ppt2a.1 (ENSPNYG00000018844)
Burton s mouthbrooder	MODERN SPECIES	327	rpz6 (ENSHBUG00000009089)	rpz5 (ENSHBUG00000009100)	rpz4 (ENSHBUG00000009111)	ENSHBUG00000009120	ENSHBUG00000000231	ENSHBUG00000009212	ENSHBUG00000009223	ENSHBUG00000009235	ENSHBUG00000009248	ENSHBUG00000009259	zgc:174938 (ENSHBUG00000009267)	lamtor2 (ENSHBUG00000009286) #19	rab25b (ENSHBUG00000009320) #20	rab11al (ENSHBUG00000009333)	ENSHBUG00000009342	lmna (ENSHBUG00000009419) #22	ENSHBUG00000009589	gpatch4 (ENSHBUG00000009675)	ENSHBUG00000009684	ENSHBUG00000009694	tspan13a (ENSHBUG00000009721)	bag6 (ENSHBUG00000009738)	ENSHBUG00000009753	ENSHBUG00000009763	tnfb (ENSHBUG00000009771)	GABBR1 (ENSHBUG00000009828)	ENSHBUG00000009836	sh3bp5la (ENSHBUG00000009874)	mgat1a (ENSHBUG00000009888)	rnf183 (ENSHBUG00000009899)	dhx16 (ENSHBUG00000009952)
Lyretail cichlid	MODERN SPECIES	373	SV2A (ENSNBRG00000004684)	bola1 (ENSNBRG00000004852)	ENSNBRG00000004874	rpz (ENSNBRG00000004907)	rpz6 (ENSNBRG00000004913)	rpz5 (ENSNBRG00000004927)	rpz4 (ENSNBRG00000004938)	ENSNBRG00000004948	ENSNBRG00000005005	ENSNBRG00000005029	zgc:174938 (ENSNBRG00000005060)	lamtor2 (ENSNBRG00000005083) #19	rab25b (ENSNBRG00000005097) #20	rab11al (ENSNBRG00000005116)	ENSNBRG00000005141	LMNA (ENSNBRG00000005177) #22	ENSNBRG00000005276	ENSNBRG00000005385	tspan13a (ENSNBRG00000005407)	ENSNBRG00000005433	glrx3 (ENSNBRG00000005445)	ENSNBRG00000005466	tnfb (ENSNBRG00000005485)	GABBR1 (ENSNBRG00000005506)	sh3bp5la (ENSNBRG00000005556)	mgat1a (ENSNBRG00000005572)	rnf183 (ENSNBRG00000005595)	dhx16 (ENSNBRG00000005624)	ppt2a.2 (ENSNBRG00000005682)	ENSNBRG00000005768	ENSNBRG00000005798
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00940000181547	ENSGT00940000165143.a.b.g	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000167370	ENSGT00390000002634.a.e	ENSGT00940000166061.b	ENSGT00940000166527	ENSGT00700000104815.g	ENSGT00980000198606	ENSGT00940000159023	ENSGT00940000153385.b.a.b.fd.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000177047.D	ENSGT00940000167246.a	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246.b	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00390000002634.a.e	ENSGT00940000166061.b	ENSGT00940000166527	ENSGT01000000218930.a.a	ENSGT00700000104815.g	ENSGT00980000198621	ENSGT00940000159023	ENSGT00940000153385.b.a.b.fd.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.g.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.g.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.h	ENSGT00940000167246.b	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b
Javanese ricefish	MODERN SPECIES	7	PHF1 (ENSOJAG00000005536)	rgl2 (ENSOJAG00000005407)	dnase2 (ENSOJAG00000005393)	pbx2 (ENSOJAG00000005367)	ENSOJAG00000005348	ENSOJAG00000005345	ENSOJAG00000005333	ENSOJAG00000005309	ENSOJAG00000005299	ENSOJAG00000005287	ENSOJAG00000005277	lamtor2 (ENSOJAG00000005223) #19	rab25b (ENSOJAG00000005193) #20	rab11al (ENSOJAG00000005141)	ENSOJAG00000005130	lmna (ENSOJAG00000005058) #22	ENSOJAG00000004929	gpatch4 (ENSOJAG00000004871)	ENSOJAG00000004856	ENSOJAG00000004836	ENSOJAG00000004763	ENSOJAG00000004738	ENSOJAG00000004727	rab5ab (ENSOJAG00000004641)	ZNF385D (ENSOJAG00000004622)	ube2e1 (ENSOJAG00000004555)	nr1d2a (ENSOJAG00000004540)	ENSOJAG00000004521	ENSOJAG00000004494	ENSOJAG00000004474	ENSOJAG00000004447
Indian medaka	MODERN SPECIES	33	ENSOMEG00000020764	pbx2 (ENSOMEG00000020750)	ENSOMEG00000020725	ENSOMEG00000020710	ENSOMEG00000000548	ENSOMEG00000020685	TAP1 (ENSOMEG00000020635)	BRD2 (ENSOMEG00000020558)	ENSOMEG00000020508	ENSOMEG00000020470	ENSOMEG00000020446	lamtor2 (ENSOMEG00000020398) #19	rab25b (ENSOMEG00000020350) #20	ENSOMEG00000020271	ENSOMEG00000020254	lmna (ENSOMEG00000020229) #22	ENSOMEG00000020156	gpatch4 (ENSOMEG00000000529)	ENSOMEG00000020092	ENSOMEG00000020082	ENSOMEG00000020071	ENSOMEG00000020059	ENSOMEG00000020042	ENSOMEG00000020028	ENSOMEG00000020005	ENSOMEG00000019992	ENSOMEG00000019967	ENSOMEG00000019944	ENSOMEG00000019893	tspan13a (ENSOMEG00000019862)	bag6 (ENSOMEG00000019836)
Oryzias_a	ANCESTRAL SPECIES	37	ENSGT00940000167370	ENSGT00390000002634.a.e	ENSGT00940000175842	ENSGT00940000166527	ENSGT00700000104815.g	ENSGT00980000198606	ENSGT00940000159023	ENSGT00940000153385.b.a.b.fd.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000177047.D.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.e	ENSGT00940000167246.b	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Japanese Medaka HdrR	MODERN SPECIES	7	her7 (ENSORLG00000016162)	ENSORLG00000030036	TAP1 (ENSORLG00000016158)	ENSORLG00000016149	ENSORLG00000027926	ENSORLG00000028393	ENSORLG00000027277	ENSORLG00000016141	ENSORLG00000026168	lamtor2 (ENSORLG00000016136) #19	ENSORLG00000023550	rab25b (ENSORLG00000016135) #20	rab11al (ENSORLG00000016126)	ENSORLG00000024166	ENSORLG00000022707	lmna (ENSORLG00000016113) #22	ENSORLG00000016110	ENSORLG00000016102	ENSORLG00000023907	ENSORLG00000023401	ENSORLG00000029817	ENSORLG00000025335	ENSORLG00000030523	ENSORLG00000030209	ENSORLG00000025952	ENSORLG00000016096	ENSORLG00000028854	ENSORLG00000023194	ENSORLG00000029113	ENSORLG00000026666	ENSORLG00000029078
Chinese medaka	MODERN SPECIES	1244	afp4 (ENSOSIG00000013018)	PAQR6 (ENSOSIG00000013020) #28	smg5 (ENSOSIG00000013022) #29	SYNGAP1 (ENSOSIG00000013041)	ENSOSIG00000013187	rgl2 (ENSOSIG00000013189)	dnase2 (ENSOSIG00000013192)	ENSOSIG00000013193	pbx2 (ENSOSIG00000013197)	ENSOSIG00000013200	TAP1 (ENSOSIG00000013202)	brd2b (ENSOSIG00000013328)	ENSOSIG00000013329	lamtor2 (ENSOSIG00000013332) #19	rab25b (ENSOSIG00000013339) #20	ENSOSIG00000013348 #22
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.a	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b	ENSGT00940000166999.B
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.b
Mangrove rivulus	MODERN SPECIES	388				ENSKMAG00000015299	rpz (ENSKMAG00000015317)	rpz6 (ENSKMAG00000015330)	rpz5 (ENSKMAG00000015347)	rpz4 (ENSKMAG00000015357)	ENSKMAG00000015368	ENSKMAG00000015384	ENSKMAG00000015404	lamtor2 (ENSKMAG00000015425) #19	rab25b (ENSKMAG00000015488) #20	rab11al (ENSKMAG00000015516)	ENSKMAG00000015538	lmna (ENSKMAG00000015573) #22	ENSKMAG00000015665	gpatch4 (ENSKMAG00000015765)	ENSKMAG00000015809
Turquoise killifish	MODERN SPECIES	1614	ENSNFUG00015004646	ENSNFUG00015004643	Nfu_g_1_024366 (ENSNFUG00015004639)	ENSNFUG00015004637	RPZ (ENSNFUG00015004635)	Nfu_g_1_010989 (ENSNFUG00015004634)	RPZ5 (ENSNFUG00015004631)	rpz4 (ENSNFUG00015004629)	ENSNFUG00015004625	ENSNFUG00015004619	ENSNFUG00015004615	LAMTOR2 (ENSNFUG00015004609) #19	RAB25 (ENSNFUG00015004604) #20	rab11al (ENSNFUG00015004595)	ENSNFUG00015004588	LMNA (ENSNFUG00015004578) #22	gpatch4 (ENSNFUG00015004571)	ENSNFUG00015004568	ENSNFUG00015004567	ENSNFUG00015004559	ENSNFUG00015004553	ENSNFUG00015004543	Nfu_g_1_011092 (ENSNFUG00015004534)	ENSNFUG00015004526	SH3BP5LA (ENSNFUG00015004516)	MGAT1A (ENSNFUG00015004510)	rnf183 (ENSNFUG00015004507)	DHX16 (ENSNFUG00015004391)	ppt2a.2 (ENSNFUG00015004356)	ENSNFUG00015004347	ENSNFUG00015004342
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.b	ENSGT00940000167246.a.a.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a	ENSGT00940000157642.g	ENSGT00930000152259	ENSGT00390000018500.a.d	ENSGT00530000063632.B.b
NAME_4	ANCESTRAL SPECIES	270					ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.g.a	ENSGT00510000051675.h.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765
Mummichog	MODERN SPECIES	2487	PKN1 (ENSFHEG00000002855)	map2k7 (ENSFHEG00000002882)	myh9a (ENSFHEG00000002933)	slc25a38b (ENSFHEG00000002946)	rpz (ENSFHEG00000002950)	rpz6 (ENSFHEG00000002959)	rpz5 (ENSFHEG00000002968)	rpz4 (ENSFHEG00000002974)	ENSFHEG00000002987	ENSFHEG00000003001	ENSFHEG00000003005	lamtor2 (ENSFHEG00000003010) #19	rab25b (ENSFHEG00000003018) #20	rab11al (ENSFHEG00000000832)	ENSFHEG00000003026	lmna (ENSFHEG00000003048) #22	ENSFHEG00000003060	gpatch4 (ENSFHEG00000003097)
Sheepshead minnow	MODERN SPECIES	1675												lamtor2 (ENSCVAG00000019967) #19	rab25b (ENSCVAG00000020003) #20	rab11al (ENSCVAG00000020016)	ENSCVAG00000020021	lmna (ENSCVAG00000020062) #22
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.a.a	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.j	ENSGT00940000167246.a.a.a.b.a.a	ENSGT00940000167246.a.a.a.b.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.i.a.a	ENSGT01020000230673.B	ENSGT00940000174114	ENSGT00940000157010.m	ENSGT00390000016199.a	ENSGT00550000075030	ENSGT00940000169242	ENSGT00940000171828	ENSGT01060000248544.a.b.b.a
Platyfish	MODERN SPECIES	17	bola1 (ENSXMAG00000019538)	nr2f5 (ENSXMAG00000013436)	ENSXMAG00000013435	rpz (ENSXMAG00000019536)	rpz6 (ENSXMAG00000025231)	rpz5 (ENSXMAG00000020380)	rpz4 (ENSXMAG00000023516)	ENSXMAG00000020842	ENSXMAG00000013432	ENSXMAG00000013429	lamtor2 (ENSXMAG00000028948) #19	rab25b (ENSXMAG00000028745) #20	rab11al (ENSXMAG00000027071)	ENSXMAG00000013412	ENSXMAG00000028413	lmna (ENSXMAG00000013395) #22	ENSXMAG00000013394	gpatch4 (ENSXMAG00000024520)	ENSXMAG00000029076	ENSXMAG00000013390	ENSXMAG00000026010	ENSXMAG00000022460	ENSXMAG00000022882	ENSXMAG00000002563	ENSXMAG00000026134	ENSXMAG00000028796	ENSXMAG00000011982	ENSXMAG00000023200	ENSXMAG00000013389	ENSXMAG00000025797	ENSXMAG00000023126
Poecilia	ANCESTRAL SPECIES		ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.j	ENSGT00940000167246.a.a.a.b.a.a	ENSGT00940000167246.a.a.a.b.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.i.a.a	ENSGT01020000230673.A.d.b
Guppy	MODERN SPECIES	446	SV2A (ENSPREG00000017505)	bola1 (ENSPREG00000017489)	nr2f5 (ENSPREG00000017478)	ENSPREG00000017462	rpz (ENSPREG00000017451)	rpz6 (ENSPREG00000017443)	rpz5 (ENSPREG00000017425)	rpz4 (ENSPREG00000017417)	ENSPREG00000017402	ENSPREG00000017387	ENSPREG00000017369	lamtor2 (ENSPREG00000017357) #19	rab25b (ENSPREG00000017337) #20	rab11al (ENSPREG00000017324)	ENSPREG00000017309	lmna (ENSPREG00000017213) #22	ENSPREG00000017085	ENSPREG00000017066	gpatch4 (ENSPREG00000017029)	ENSPREG00000017005	ENSPREG00000016994	ENSPREG00000016981	ENSPREG00000016971	ENSPREG00000016950	ENSPREG00000016940	ENSPREG00000016926	ENSPREG00000016903	ENSPREG00000016886	ENSPREG00000016877	zgc:171704 (ENSPREG00000016865)	ENSPREG00000016853
NAME_6	ANCESTRAL SPECIES	175	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT00940000167246.a.a.a.a.a.a	ENSGT00940000167246.a.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.j	ENSGT00940000167246.a.a.a.b.a.b
Amazon molly	MODERN SPECIES	513	ENSPFOG00000011194	ENSPFOG00000023669	rpz (ENSPFOG00000020451)	rpz6 (ENSPFOG00000011206)	rpz5 (ENSPFOG00000022427)	rpz5 (ENSPFOG00000020452)	rpz4 (ENSPFOG00000020453)	ENSPFOG00000011217	ENSPFOG00000011230	ENSPFOG00000011232	ENSPFOG00000011272	lamtor2 (ENSPFOG00000011309) #19	rab25b (ENSPFOG00000011310) #20	rab11al (ENSPFOG00000011316)	ENSPFOG00000011366	lmna (ENSPFOG00000011389) #22	ENSPFOG00000011648	gpatch4 (ENSPFOG00000011835)	ENSPFOG00000021833	ENSPFOG00000022351	ENSPFOG00000011860	ENSPFOG00000011872	ENSPFOG00000011886	ENSPFOG00000011893	ENSPFOG00000022819
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	1281																lmna (ENSPLAG00000019653) #22	ENSPLAG00000019632	gpatch4 (ENSPLAG00000019504)	ENSPLAG00000019466	ENSPLAG00000019446	ENSPLAG00000019433
Sailfin molly	MODERN SPECIES	472	bola1 (ENSPLAG00000008152)	nr2f5 (ENSPLAG00000008137)	ENSPLAG00000008116	rpz (ENSPLAG00000008099)	rpz6 (ENSPLAG00000008092)	ENSPLAG00000008082	rpz5 (ENSPLAG00000008067)	rpz4 (ENSPLAG00000008058)	ENSPLAG00000008049	ENSPLAG00000008043	ENSPLAG00000008027	lamtor2 (ENSPLAG00000008013) #19	rab25b (ENSPLAG00000008004) #20	rab11al (ENSPLAG00000007986)	ENSPLAG00000007972	ENSPLAG00000007965 #22
Tiger tail seahorse	MODERN SPECIES	276	adar (ENSHCOG00000007480)	ENSHCOG00000007469	ENSHCOG00000007456	rab13 (ENSHCOG00000007440)	ENSHCOG00000007316	fdps (ENSHCOG00000007300)	ENSHCOG00000007269 #7	ENSHCOG00000007261 #8	dap3 (ENSHCOG00000007242) #9	GBA1 (ENSHCOG00000007223)	rnf115a (ENSHCOG00000007208)	lamtor2 (ENSHCOG00000007197) #19	rab25b (ENSHCOG00000007187) #20	rab11al (ENSHCOG00000000232)	ENSHCOG00000007164	lmna (ENSHCOG00000007151) #22	ENSHCOG00000007132	gpatch4 (ENSHCOG00000007016)	ENSHCOG00000006996	tspan13a (ENSHCOG00000006990)	bag6 (ENSHCOG00000006980)	glrx3 (ENSHCOG00000006958)	ENSHCOG00000000206	tnfb (ENSHCOG00000006938)	GABBR1 (ENSHCOG00000006927)	ENSHCOG00000006882	sh3bp5la (ENSHCOG00000006830)	mgat1a (ENSHCOG00000006811)	dhx16 (ENSHCOG00000006805)	ppt2a.2 (ENSHCOG00000006744)	ENSHCOG00000006658
Pinecone sodierfish	MODERN SPECIES	7	ENSMMDG00005003117	rpz5 (ENSMMDG00005003114)	rpz4 (ENSMMDG00005003112)	ENSMMDG00005003108	rpz (ENSMMDG00005003104)	ENSMMDG00005003102	rpz (ENSMMDG00005003100)	ENSMMDG00005003094	ENSMMDG00005003085	zgc:174938 (ENSMMDG00005003081)	ubqln4 (ENSMMDG00005003068) #18	lamtor2 (ENSMMDG00005003058) #19	rab25b (ENSMMDG00005003050) #20	rab11al (ENSMMDG00005003043)	ENSMMDG00005003040	lmna (ENSMMDG00005003027) #22	ENSMMDG00005002812	gpatch4 (ENSMMDG00005002789)	ENSMMDG00005002779	ENSMMDG00005002766	tspan13a (ENSMMDG00005002755)	bag6 (ENSMMDG00005002697)	glrx3 (ENSMMDG00005002672)	ENSMMDG00005002662	ENSMMDG00005002651	tnfb (ENSMMDG00005002511)	GABBR1 (ENSMMDG00005002394)	sh3bp5la (ENSMMDG00005002384)	mgat1a (ENSMMDG00005002382)	rnf183 (ENSMMDG00005002378)	dhx16 (ENSMMDG00005002182)
Cod	MODERN SPECIES	2	ENSGMOG00000015429	ENSGMOG00000015587	ENSGMOG00000015606	ENSGMOG00000018513	ENSGMOG00000034614	ENSGMOG00000018543 #36	ENSGMOG00000018601	ENSGMOG00000018606	ENSGMOG00000007686	tmem176l.4 (ENSGMOG00000007682)	zgc:174938 (ENSGMOG00000006435)	lamtor2 (ENSGMOG00000006440) #19	rab25b (ENSGMOG00000006444) #20	rab11al (ENSGMOG00000006450)	ENSGMOG00000029153	LMNA (ENSGMOG00000006470) #22	ENSGMOG00000006483	ENSGMOG00000023690	ENSGMOG00000037035	bag6 (ENSGMOG00000013765)	ENSGMOG00000023903	ENSGMOG00000025015	tnfb (ENSGMOG00000013963)	ENSGMOG00000033726	sh3bp5la (ENSGMOG00000026786)	mgat1a (ENSGMOG00000009234)	rnf183 (ENSGMOG00000027546)	dhx16 (ENSGMOG00000009282)	ppt2a.1 (ENSGMOG00000035249)	ENSGMOG00000027086	ENSGMOG00000035205
Protacanthopterygii	ANCESTRAL SPECIES	12	ENSGT00510000048165	ENSGT00940000165753	ENSGT00940000163828.a.b.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a	ENSGT00390000008158.b.b.a.a	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r #18	ENSGT00390000006100 #19	ENSGT00940000158230.b.a #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b #22	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000169377	ENSGT00940000159463.n.a #35	ENSGT00950000182844.b.b.a #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314	ENSGT00940000154996.a.a.a	ENSGT00940000157759
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	27	ENSGT00940000165753.d	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a	ENSGT00940000165143.a.a.q	ENSGT00390000008158.b.b.a.b.i.b	ENSGT00390000008158.b.a.o.a	ENSGT00390000008158.b.b.a.a.n	ENSGT01010000223409	ENSGT00510000051675.i	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r.b #18	ENSGT00390000006100.r #19	ENSGT00940000158230.b.a.d #20	ENSGT00940000165149.a.b.b	ENSGT00940000166523.g	ENSGT00940000157244.a.b.e #22	ENSGT00940000155333.B.d	ENSGT01030000234575.c.a.a.a.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.a	ENSGT00940000169377.b	ENSGT00940000159463.n.a.b #35	ENSGT00950000182844.b.b.a.h #34	ENSGT00940000161384.e	ENSGT00940000157343.a.b.f	ENSGT00940000159724.q	ENSGT00530000063745.a	ENSGT00940000160475.u	ENSGT00940000165314.e	ENSGT00940000154996.a.a.a.c	ENSGT00940000157759.n	ENSGT00940000155176.o.a.h
Salmoninae_a	ANCESTRAL SPECIES	39	ENSGT00940000165753.d	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a	ENSGT00940000165143.a.a.q	ENSGT00390000008158.b.b.a.b.i.b	ENSGT00390000008158.b.a.o.a	ENSGT00390000008158.b.b.a.a.n	ENSGT01010000223409	ENSGT00510000051675.i	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r.b #18	ENSGT00390000006100.r #19	ENSGT00940000158230.b.a.d #20	ENSGT00940000165149.a.b.b	ENSGT00940000166523.g	ENSGT00940000157244.a.b.e #22	ENSGT00940000155333.B.d	ENSGT01030000234575.c.a.a.a.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.a	ENSGT00940000169377.b	ENSGT00940000159463.n.a.b #35	ENSGT00950000182844.b.b.a.h #34	ENSGT00940000161384.e	ENSGT00940000157343.a.b.f	ENSGT00940000159724.q	ENSGT00530000063745.a	ENSGT00940000160475.u	ENSGT00940000164422.p	ENSGT00940000165314.e	ENSGT00940000154996.a.a.a.c	ENSGT00940000157759.n
Salmo	ANCESTRAL SPECIES	1	ENSGT00510000048165.e	ENSGT00940000165753.d	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a	ENSGT00940000165143.a.a.q.d	ENSGT00390000008158.b.b.a.b.i.b.b	ENSGT00390000008158.b.a.o.a	ENSGT00390000008158.b.b.a.a.n	ENSGT00510000051675.i	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r.b #18	ENSGT00390000006100.r #19	ENSGT00940000158230.b.a.d #20	ENSGT00940000165149.a.b.b	ENSGT00940000166523.g	ENSGT00940000157244.a.b.e #22	ENSGT00940000155333.B.d	ENSGT00390000008765.l	ENSGT01030000234575.c.a.a.a.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.a	ENSGT00940000169377.b	ENSGT00940000159463.n.a.b #35	ENSGT00950000182844.b.b.a.h #34	ENSGT00940000161384.e	ENSGT00940000157343.a.b.f	ENSGT00940000159724.q	ENSGT00530000063745.a	ENSGT00940000160475.u	ENSGT00940000164422.p	ENSGT00940000165314.e	ENSGT00940000154996.a.a.a.c
River trout	MODERN SPECIES	22	mtmr11 (ENSSTUG00000037559)	SV2A (ENSSTUG00000037605)	bola1 (ENSSTUG00000038021)	nr2f5 (ENSSTUG00000038025)	ENSSTUG00000038041	rpz (ENSSTUG00000038080)	rpz6 (ENSSTUG00000038082)	rpz5 (ENSSTUG00000038084)	ENSSTUG00000038103	zgc:174938 (ENSSTUG00000038170)	ubqln4 (ENSSTUG00000038189) #18	lamtor2 (ENSSTUG00000038524) #19	rab25b (ENSSTUG00000038546) #20	rab11al (ENSSTUG00000038614)	ENSSTUG00000038657	lmna (ENSSTUG00000038669) #22	ENSSTUG00000038776	gpatch4 (ENSSTUG00000038813)	ENSSTUG00000038824	ENSSTUG00000038827	ENSSTUG00000038838	mef2d (ENSSTUG00000038857) #35	rhbg (ENSSTUG00000039002) #34	hapln2 (ENSSTUG00000039038)	bcan (ENSSTUG00000039054)	ISG20L2 (ENSSTUG00000039091)	mettl25b (ENSSTUG00000039094)	s100a1 (ENSSTUG00000039116)	tlr18 (ENSSTUG00000039126)	si:ch211-113g11.6 (ENSSTUG00000039143)	lingo4b (ENSSTUG00000039170)
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000121934	rpz4 (ENSSSAG00000092151)	ENSSSAG00000008196	ENSSSAG00000120565	M4A8A (ENSSSAG00000010511)	ENSSSAG00000118258	ENSSSAG00000119551	m4a8a (ENSSSAG00000060046)	ENSSSAG00000089912	ubqln4 (ENSSSAG00000096486) #18	lamtor2 (ENSSSAG00000008231) #19	rab25b (ENSSSAG00000008244) #20	rab11al (ENSSSAG00000008269)	ENSSSAG00000008307	ENSSSAG00000009866	LMNA (ENSSSAG00000008349) #22	ENSSSAG00000110312	ENSSSAG00000009893	ENSSSAG00000009900	ENSSSAG00000094384	mef2d (ENSSSAG00000009931) #35	rhbg (ENSSSAG00000009992) #34	hapln2 (ENSSSAG00000071090)	bcan (ENSSSAG00000010213)	ISG20L2 (ENSSSAG00000010247)	mettl25b (ENSSSAG00000010251)	tlr18 (ENSSSAG00000010267)	si:ch211-113g11.6 (ENSSSAG00000071017)	lingo4b (ENSSSAG00000081890)	ctsk (ENSSSAG00000084507)	cats (ENSSSAG00000010327)
Oncorhynchus	ANCESTRAL SPECIES	38	ENSGT00510000048165.e	ENSGT00940000165753.d	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a	ENSGT00940000165143.a.a.q	ENSGT00390000008158.b.b.a.b.i.b	ENSGT00390000008158.b.a.o.a	ENSGT00390000008158.b.b.a.a.n	ENSGT00510000051675.i.f	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r.b #18	ENSGT00390000006100.r #19	ENSGT00940000158230.b.a.d #20	ENSGT00940000165149.a.b.b	ENSGT00940000166523.g	ENSGT00940000157244.a.b.e #22	ENSGT00940000155333.B.d	ENSGT01030000234575.c.a.a.a.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.a	ENSGT00940000169377.b	ENSGT00940000159463.n.a.b #35	ENSGT00950000182844.b.b.a.h #34	ENSGT00940000161384.e	ENSGT00940000157343.a.b.f	ENSGT00940000159724.q	ENSGT00530000063745.a	ENSGT00940000160475.u	ENSGT00940000164422.p	ENSGT00940000165314.e	ENSGT00940000154996.a.a.a.c	ENSGT00940000157759.n
Oncorhynchus_a	ANCESTRAL SPECIES	26	ENSGT00940000165143.a.b.p.a.a	ENSGT00940000165143.a.a.q	ENSGT00390000008158.b.b.a.b.i.b	ENSGT00390000008158.b.a.o.a	ENSGT00390000008158.b.b.a.a.n	ENSGT01010000223409	ENSGT00510000051675.i.e	ENSGT01000000219592	ENSGT00390000010118.c.a.a	ENSGT00510000051675.i.f	ENSGT00940000155620.r.b #18	ENSGT00390000006100.r #19	ENSGT00940000158230.b.a.d #20	ENSGT00940000165149.a.b.b	ENSGT00940000166523.g	ENSGT00940000157244.a.b.e #22	ENSGT00940000155333.B.d	ENSGT01030000234575.c.a.a.a.a.a.b.b.c	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.a	ENSGT00940000169377.b	ENSGT00940000159463.n.a.b #35	ENSGT00950000182844.b.b.a.h #34	ENSGT00940000161384.e	ENSGT00940000157343.a.b.f	ENSGT00940000159724.q	ENSGT00530000063745.a	ENSGT00940000160475.u	ENSGT00940000164422.p	ENSGT00940000165314.e	ENSGT00940000154996.a.a.a.c	ENSGT00940000157759.n
Coho salmon	MODERN SPECIES	4	ENSOKIG00005020393	ENSOKIG00005020405	rpz (ENSOKIG00005020414)	rpz6 (ENSOKIG00005020418)	rpz5 (ENSOKIG00005020423)	rpz4 (ENSOKIG00005020427)	ENSOKIG00005020432	ENSOKIG00005020447	zgc:174938 (ENSOKIG00005020454)	ENSOKIG00005020464	ubqln4 (ENSOKIG00005020486) #18	lamtor2 (ENSOKIG00005020878) #19	rab25b (ENSOKIG00005020905) #20	rab11al (ENSOKIG00005020937)	ENSOKIG00005021034	LMNA (ENSOKIG00005021075) #22	ENSOKIG00005021172	ENSOKIG00005021202	ENSOKIG00005021215	ENSOKIG00005021230	mef2d (ENSOKIG00005021265) #35	ENSOKIG00005021339	rhbg (ENSOKIG00005021364) #34	hapln2 (ENSOKIG00005021474)	bcan (ENSOKIG00005021491)	ISG20L2 (ENSOKIG00005021512)	mettl25b (ENSOKIG00005021554)	s100a1 (ENSOKIG00005021581)	tlr18 (ENSOKIG00005021603)	si:ch211-113g11.6 (ENSOKIG00005021659)	lingo4b (ENSOKIG00005021688)
Chinook salmon	MODERN SPECIES	15	ENSOTSG00005016214	rpz (ENSOTSG00005016213)	ENSOTSG00005016211	ENSOTSG00005016210	ENSOTSG00005016209	rpz5 (ENSOTSG00005016208)	rpz4 (ENSOTSG00005016207)	ENSOTSG00005016206	ENSOTSG00005016205	ENSOTSG00005016204	ubqln4 (ENSOTSG00005016076) #18	lamtor2 (ENSOTSG00005016073) #19	rab25b (ENSOTSG00005016070) #20	ENSOTSG00005016068	ENSOTSG00005016065	lmna (ENSOTSG00005015898) #22	ENSOTSG00005015895	ENSOTSG00005015894	ENSOTSG00005015893	ENSOTSG00005015892	mef2d (ENSOTSG00005015866) #35	rhbg (ENSOTSG00005015808) #34	hapln2 (ENSOTSG00005015807)	bcan (ENSOTSG00005015805)	ENSOTSG00005015803	mettl25b (ENSOTSG00005015802)	s100a1 (ENSOTSG00005015801)	tlr18 (ENSOTSG00005015733)	si:ch211-113g11.6 (ENSOTSG00005015732)	lingo4b (ENSOTSG00005015731)	ctsk (ENSOTSG00005015730)
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000001121	ENSOMYG00000001086	rpz (ENSOMYG00000077708)	rpz6 (ENSOMYG00000001075)	ENSOMYG00000069366	rpz5 (ENSOMYG00000001071)	rpz4 (ENSOMYG00000001065)	ENSOMYG00000057262	zgc:174938 (ENSOMYG00000000981)	ENSOMYG00000049461	ubqln4 (ENSOMYG00000000958) #18	lamtor2 (ENSOMYG00000000922) #19	rab25b (ENSOMYG00000000916) #20	rab11al (ENSOMYG00000000878)	ENSOMYG00000000827	LMNA (ENSOMYG00000000818) #22	ENSOMYG00000000754	ENSOMYG00000061602	ENSOMYG00000000628	ENSOMYG00000000615	mef2d (ENSOMYG00000000599) #35	ENSOMYG00000051267	rhbg2a (ENSOMYG00000000559) #34	hapln2 (ENSOMYG00000000450)	ENSOMYG00000050334	bcan (ENSOMYG00000000429)	ENSOMYG00000000411	mettl25b (ENSOMYG00000000383)	s100a1 (ENSOMYG00000000361)	tlr18 (ENSOMYG00000000349)	si:ch211-113g11.6 (ENSOMYG00000000312)
Huchen	MODERN SPECIES	208						ENSHHUG00000042114	rpz5 (ENSHHUG00000042117)	rpz4 (ENSHHUG00000042118)	ENSHHUG00000042119	zgc:174938 (ENSHHUG00000042151)	ubqln4 (ENSHHUG00000042159) #18	lamtor2 (ENSHHUG00000042170) #19	rab25b (ENSHHUG00000042194) #20	rab11al (ENSHHUG00000042219)	ENSHHUG00000042257	lmna (ENSHHUG00000042268) #22	ENSHHUG00000042292	ENSHHUG00000042395	ENSHHUG00000042410	ENSHHUG00000042431	mef2d (ENSHHUG00000042439) #35	rhbg (ENSHHUG00000042527) #34	hapln2 (ENSHHUG00000042670)	bcan (ENSHHUG00000042677)	ISG20L2 (ENSHHUG00000042688)	mettl25b (ENSHHUG00000042694)	s100a1 (ENSHHUG00000042705)	si:ch211-113g11.6 (ENSHHUG00000042744)	ctsk (ENSHHUG00000042760)	lingo4b (ENSHHUG00000042846)	CTSS (ENSHHUG00000042848)
Salmoninae	ANCESTRAL SPECIES	45	ENSGT00390000008158.b.a.p.a	ENSGT00390000008158.b.b.a.a.m.b.a	ENSGT00940000165143.a.a.r	ENSGT00390000008158.b.b.a.a.m.b.b	ENSGT00940000165143.a.b.p.a.b	ENSGT00390000008158.b.a.p.b	ENSGT00390000008158.b.b.a.b.i.a	ENSGT00390000008158.b.a.o.b	ENSGT00390000008158.b.b.a.a.m.a	ENSGT00510000051675.j	ENSGT00940000155620.r.a #18	ENSGT00390000006100.q #19	ENSGT00940000158230.b.a.c #20	ENSGT00940000165149.a.b.a	ENSGT00940000166523.h	ENSGT00940000157244.a.b.f #22	ENSGT00940000155333.B.c	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.b	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a #35	ENSGT00950000182844.b.b.a.g #34	ENSGT00940000161384.f	ENSGT00940000157343.a.b.e	ENSGT00940000159724.r	ENSGT01060000250898	ENSGT00940000160475.v	ENSGT00940000164422	ENSGT00940000165314.f	ENSGT00940000154996.a.a.a.d	ENSGT00940000157759.m
Salmoninae_a	ANCESTRAL SPECIES	43	ENSGT00940000163828.a.b.b.e	ENSGT00390000008158.b.b.a.a.m.b.a	ENSGT00940000165143.a.a.r	ENSGT00390000008158.b.b.a.a.m.b.b	ENSGT00940000165143.a.b.p.a.b	ENSGT00390000008158.b.a.p.b	ENSGT00390000008158.b.b.a.b.i.a	ENSGT00390000008158.b.a.o.b	ENSGT00390000008158.b.b.a.a.m.a	ENSGT00510000051675.j	ENSGT00940000155620.r.a #18	ENSGT00390000006100.q #19	ENSGT00940000158230.b.a.c #20	ENSGT00940000165149.a.b.a	ENSGT00940000166523.h	ENSGT00940000157244.a.b.f #22	ENSGT00940000155333.B.c	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.b	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a #35	ENSGT00950000182844.b.b.a.g #34	ENSGT00940000161384.f	ENSGT00940000157343.a.b.e	ENSGT00940000159724.r	ENSGT00940000160475.v	ENSGT00940000164422.o	ENSGT00940000165314.f	ENSGT00940000154996.a.a.a.d	ENSGT00940000157759.m	ENSGT00940000155176.o.a.g
Salmo	ANCESTRAL SPECIES	32	ENSGT00390000008158.b.b.a.b.j	ENSGT00390000008158.b.b.a.a.m.b.a	ENSGT00940000165143.a.a.r	ENSGT00390000008158.b.b.a.a.m.b.b	ENSGT00940000165143.a.b.p.a.b	ENSGT00390000008158.b.a.p.b	ENSGT00390000008158.b.b.a.b.i.a	ENSGT00390000008158.b.a.o.b	ENSGT00390000008158.b.b.a.a.m.a	ENSGT00510000051675.j	ENSGT00940000155620.r.a #18	ENSGT00390000006100.q #19	ENSGT00940000158230.b.a.c #20	ENSGT00940000165149.a.b.a	ENSGT00940000166523.h	ENSGT00940000157244.a.b.f #22	ENSGT00940000155333.B.c	ENSGT00390000008765.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.b	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a #35	ENSGT00950000182844.b.b.a.g #34	ENSGT00940000161384.f	ENSGT00940000157343.a.b.e	ENSGT00940000159724.r	ENSGT00940000160475.v	ENSGT00940000164422.o	ENSGT00940000165314.f	ENSGT00940000154996.a.a.a.d	ENSGT00940000157759.m	ENSGT00940000155176.o.a.g
River trout	MODERN SPECIES	30	rpz (ENSSTUG00000038673)	rpz5 (ENSSTUG00000038663)	ENSSTUG00000038661	rpz4 (ENSSTUG00000038619)	rpz (ENSSTUG00000038608)	rpz4 (ENSSTUG00000038603)	rpz5 (ENSSTUG00000038579)	rpz5 (ENSSTUG00000038575)	rpz4 (ENSSTUG00000038571)	ENSSTUG00000038569	ubqln4 (ENSSTUG00000038433) #18	lamtor2 (ENSSTUG00000038406) #19	rab25b (ENSSTUG00000038376) #20	rab11al (ENSSTUG00000048664)	ENSSTUG00000048661	lmna (ENSSTUG00000048655) #22	ENSSTUG00000048635	gpatch4 (ENSSTUG00000048633)	ENSSTUG00000048630	ENSSTUG00000048626	mef2d (ENSSTUG00000048594) #35	ENSSTUG00000048585	rhbg (ENSSTUG00000048552) #34	ENSSTUG00000048545	hapln2 (ENSSTUG00000048534)	bcan (ENSSTUG00000048524)	ENSSTUG00000048518	s100a1 (ENSSTUG00000048513)	tlr18 (ENSSTUG00000048508)	si:ch211-113g11.6 (ENSSTUG00000048470)	lingo4b (ENSSTUG00000048466)
Atlantic salmon	MODERN SPECIES	11	bola1 (ENSSSAG00000072872)	nr2f5 (ENSSSAG00000097502)	ENSSSAG00000072865	ENSSSAG00000072861	ENSSSAG00000072860	rpz5 (ENSSSAG00000103736)	ENSSSAG00000072290	rpz5 (ENSSSAG00000072286)	ENSSSAG00000072283	ENSSSAG00000093440	rpz4 (ENSSSAG00000081899)	ubqln4 (ENSSSAG00000072235) #18	rab25b (ENSSSAG00000072230) #20	rab11al (ENSSSAG00000117570)	ENSSSAG00000091396	LMNA (ENSSSAG00000072180) #22	ENSSSAG00000072161	gpatch4 (ENSSSAG00000072155)	ENSSSAG00000072153	ENSSSAG00000072152	ENSSSAG00000108997	mef2d (ENSSSAG00000071885) #35	rhbg (ENSSSAG00000071118) #34	hapln2 (ENSSSAG00000010202)	bcan (ENSSSAG00000071059)	isg20l2 (ENSSSAG00000071047)	s100a1 (ENSSSAG00000071037)	tlr18 (ENSSSAG00000071033)	si:ch211-113g11.6 (ENSSSAG00000010280)	lingo4b (ENSSSAG00000090202)	ctsk (ENSSSAG00000082255)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000159172.g	ENSGT00940000160276.h	ENSGT00950000182940.b.a.b.a.a.c	ENSGT00510000048165.f	ENSGT00940000165753.c	ENSGT00940000163828.a.b.b.e	ENSGT00390000008158.b.a.p.b	ENSGT00390000008158.b.a.o.b	ENSGT00390000008158.b.b.a.a.m.a	ENSGT00510000051675.j	ENSGT00940000155620.r.a #18	ENSGT00390000006100.q #19	ENSGT00940000158230.b.a.c #20	ENSGT00940000165149.a.a	ENSGT00940000166523.h	ENSGT00940000157244.a.b.f #22	ENSGT00940000155333.B.c	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.b	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a #35	ENSGT00950000182844.b.b.a.g #34	ENSGT00940000161384.f	ENSGT00940000157343.a.b.e	ENSGT00940000159724.r	ENSGT00940000160475.v	ENSGT00940000164422.o	ENSGT00940000165314.f	ENSGT00940000154996.a.a.a.d	ENSGT00940000157759.m	ENSGT00940000155176.o.a.g
Oncorhynchus_a	ANCESTRAL SPECIES	39	ENSGT00730000111185.eb.c	ENSGT00940000159172.g	ENSGT00940000160276.h	ENSGT00950000182940.b.a.b.a.a.c	ENSGT00510000048165.f	ENSGT00940000165753.c	ENSGT00940000163828.a.b.b.e	ENSGT00390000008158.b.a.o.b	ENSGT00390000008158.b.b.a.a.m.a	ENSGT00510000051675.j	ENSGT00940000155620.r.a #18	ENSGT00390000006100.q #19	ENSGT00940000158230.b.a.c #20	ENSGT00940000165149.a.a	ENSGT00940000166523.h	ENSGT00940000157244.a.b.f #22	ENSGT00940000155333.B.c	ENSGT00390000008765	ENSGT01100000263776	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a #35	ENSGT00950000182844.b.b.a.g #34	ENSGT00940000161384.f	ENSGT00940000157343.a.b.e	ENSGT00940000159724.r	ENSGT00940000160475.v	ENSGT00940000164422.o	ENSGT00940000165314.f	ENSGT00940000154996.a.a.a.d	ENSGT00940000157759.m	ENSGT00940000155176.o.a.g
Coho salmon	MODERN SPECIES	11	rbm8a (ENSOKIG00005024006)	otud7b (ENSOKIG00005023961)	mtmr11 (ENSOKIG00005023835)	SV2A (ENSOKIG00005023756)	ENSOKIG00005023731	nr2f5 (ENSOKIG00005023713)	ENSOKIG00005023704	rpz5 (ENSOKIG00005023668)	rpz4 (ENSOKIG00005023664)	ENSOKIG00005023658	ubqln4 (ENSOKIG00005023638) #18	lamtor2 (ENSOKIG00005023629) #19	rab25b (ENSOKIG00005023603) #20	rab11al (ENSOKIG00005023587)	ENSOKIG00005023573	lmna (ENSOKIG00005023461) #22	ENSOKIG00005023438	gpatch4 (ENSOKIG00005023436)	ENSOKIG00005023417	ENSOKIG00005023408	mef2d (ENSOKIG00005022803) #35	rhbg (ENSOKIG00005022587) #34	hapln2 (ENSOKIG00005022561)	bcan (ENSOKIG00005022519)	ENSOKIG00005022485	s100a1 (ENSOKIG00005022371)	tlr18 (ENSOKIG00005022358)	si:ch211-113g11.6 (ENSOKIG00005022338)	lingo4b (ENSOKIG00005022329)	ctsk (ENSOKIG00005022317)	CTSS (ENSOKIG00005022279)
Chinook salmon	MODERN SPECIES	22	rbm8a (ENSOTSG00005007474)	otud7b (ENSOTSG00005007467)	mtmr11 (ENSOTSG00005007464)	SV2A (ENSOTSG00005007461)	bola1 (ENSOTSG00005007451)	nr2f5 (ENSOTSG00005007449)	ENSOTSG00005007448	rpz5 (ENSOTSG00005007437)	rpz4 (ENSOTSG00005007436)	ENSOTSG00005007435	ubqln4 (ENSOTSG00005007285) #18	lamtor2 (ENSOTSG00005007283) #19	rab25b (ENSOTSG00005007282) #20	rab11al (ENSOTSG00005007281)	ENSOTSG00005007279	lmna (ENSOTSG00005007274) #22	ENSOTSG00005007264	gpatch4 (ENSOTSG00005007261)	ENSOTSG00005007260	ENSOTSG00005007259	mef2d (ENSOTSG00005007247) #35	rhbg (ENSOTSG00005007243) #34	hapln2 (ENSOTSG00005007242)	bcan (ENSOTSG00005007240)	ENSOTSG00005007239	ENSOTSG00005007238	ENSOTSG00005007237	s100a1 (ENSOTSG00005007236)	tlr18 (ENSOTSG00005007235)	si:ch211-113g11.6 (ENSOTSG00005007234)	lingo4b (ENSOTSG00005007233)
Rainbow trout	MODERN SPECIES	21	bola1 (ENSOMYG00000069669)	nr2f5 (ENSOMYG00000004772)	ENSOMYG00000004744	rpz5 (ENSOMYG00000074204)	ENSOMYG00000071196	rpz5 (ENSOMYG00000051983)	ENSOMYG00000004495	rpz5 (ENSOMYG00000004462)	ENSOMYG00000056361	ENSOMYG00000004411	ubqln4 (ENSOMYG00000004399) #18	mapip (ENSOMYG00000004275) #19	rab25b (ENSOMYG00000004235) #20	rab11al (ENSOMYG00000004208)	ENSOMYG00000004104	LMNA (ENSOMYG00000003999) #22	ENSOMYG00000012115	gpatch4 (ENSOMYG00000012087)	ENSOMYG00000058094	ENSOMYG00000075763	mef2d (ENSOMYG00000012051) #35	rhgb (ENSOMYG00000011958) #34	ENSOMYG00000008765	hapln2 (ENSOMYG00000011931)	ENSOMYG00000059370	bcan (ENSOMYG00000011889)	ENSOMYG00000011874	s100a1 (ENSOMYG00000011850)	tlr18 (ENSOMYG00000011838)	ENSOMYG00000052066	si:ch211-113g11.6 (ENSOMYG00000011823)
Huchen	MODERN SPECIES	47				rpz (ENSHHUG00000018680)	rpz4 (ENSHHUG00000018676)	ENSHHUG00000018665	rpz5 (ENSHHUG00000018662)	rpz4 (ENSHHUG00000018657)	ENSHHUG00000018645	ENSHHUG00000018642	ubqln4 (ENSHHUG00000018630) #18	lamtor2 (ENSHHUG00000018590) #19	rab25b (ENSHHUG00000018572) #20	rab11al (ENSHHUG00000018430)	ENSHHUG00000018426	lmna (ENSHHUG00000018377) #22	ENSHHUG00000018347	gpatch4 (ENSHHUG00000018339)	ENSHHUG00000018334	ENSHHUG00000018329	mef2d (ENSHHUG00000018194) #35	rhbg (ENSHHUG00000018089) #34	hapln2 (ENSHHUG00000018086)	ENSHHUG00000018073	ENSHHUG00000018056	ENSHHUG00000018039	mettl25b (ENSHHUG00000017971)	s100a1 (ENSHHUG00000017960)	tlr18 (ENSHHUG00000017955)	si:ch211-113g11.6 (ENSHHUG00000017946)	lingo4b (ENSHHUG00000017941)
Northern pike	MODERN SPECIES	19	bola1 (ENSELUG00000012263)	nr2f5 (ENSELUG00000012245)	ENSELUG00000012232	ENSELUG00000027498	rpz (ENSELUG00000000452)	rpz6 (ENSELUG00000012205)	rpz5 (ENSELUG00000012198)	rpz5 (ENSELUG00000012177)	rpz4 (ENSELUG00000012173)	tmem176l.2 (ENSELUG00000012170)	ubqln4 (ENSELUG00000012144) #18	lamtor2 (ENSELUG00000012106) #19	rab25b (ENSELUG00000012060) #20	rab11al (ENSELUG00000012035)	ENSELUG00000012012	lmna (ENSELUG00000011994) #22	ENSELUG00000011947	gpatch4 (ENSELUG00000034114)	ENSELUG00000011875	ENSELUG00000033555	ENSELUG00000026589	ENSELUG00000029443	ENSELUG00000011842	mef2d (ENSELUG00000011795) #35	rhbg (ENSELUG00000011736) #34	hapln2 (ENSELUG00000011692)	bcan (ENSELUG00000000422)	ENSELUG00000001149	mettl25b (ENSELUG00000011580)	s100a1 (ENSELUG00000011566)	tlr18 (ENSELUG00000011519)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	1	ENSGT00940000154566 #29	ENSGT00940000160567.p #28	ENSGT00940000159412.e	ENSGT00730000111185.db.a	ENSGT00940000159172.j	ENSGT00940000160276.l	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753.b	ENSGT00940000165143.a.a	ENSGT00390000008158.b.b.a.b	ENSGT00390000008158.b.a.s	ENSGT00510000051675	ENSGT00390000006100 #19	ENSGT00940000157244.a.b.g #22	ENSGT00940000155333.B.a	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b	ENSGT00940000167106.c	ENSGT00940000159463.k #35	ENSGT00950000182844.b.b.a.d #34	ENSGT00940000161384	ENSGT00940000157343.a.b	ENSGT00940000159724	ENSGT00530000063745.a	ENSGT00940000160475	ENSGT00940000164422	ENSGT00940000165314.a	ENSGT00940000154996.a.a.a	ENSGT00940000157759.db.b
Asian bonytongue	MODERN SPECIES	9	ENSSFOG00015024174 #15	ntrk1 (ENSSFOG00015024172)	rbm8a (ENSSFOG00015024171)	OTUD7B (ENSSFOG00015024170)	MTMR11 (ENSSFOG00015024169)	SV2A (ENSSFOG00015024167)	bola1 (ENSSFOG00015024166)	nr2f5 (ENSSFOG00015024164)	rpz2 (ENSSFOG00015024163)	rpz (ENSSFOG00015024162)	rpz6 (ENSSFOG00015024161)	rpz5 (ENSSFOG00015024160)	tmem176l.4 (ENSSFOG00015024159)	lamtor2 (ENSSFOG00015031724) #19	ENSSFOG00015024157	lmna (ENSSFOG00015024156) #22	ENSSFOG00015024155	gpatch4 (ENSSFOG00015024154)	ENSSFOG00015024153	ENSSFOG00015024151	mef2d (ENSSFOG00015024150) #35	RHBG (ENSSFOG00015024147) #34	hapln2 (ENSSFOG00015024144)	bcan (ENSSFOG00015024142)	ISG20L2 (ENSSFOG00015024140)	mettl25b (ENSSFOG00015024139)	s100a1 (ENSSFOG00015024138)	tlr18 (ENSSFOG00015024137)	si:ch211-113g11.6 (ENSSFOG00015011994)	lingo4b (ENSSFOG00015011982)	ctsk (ENSSFOG00015011956)
P. kingsleyae	MODERN SPECIES	65	ntrk1 (ENSPKIG00000009512)	afp4 (ENSPKIG00000009538)	rbm8a (ENSPKIG00000009551)	ENSPKIG00000009597	ENSPKIG00000009661	SV2A (ENSPKIG00000009685)	bola1 (ENSPKIG00000009727)	nr2f5 (ENSPKIG00000009747)	rpz2 (ENSPKIG00000009759)	rpz (ENSPKIG00000009770)	rpz6 (ENSPKIG00000009788)	rpz5 (ENSPKIG00000009799)	tmem176l.4 (ENSPKIG00000009813)	lamtor2 (ENSPKIG00000009843) #19	ENSPKIG00000009869	lmna (ENSPKIG00000009904) #22	ENSPKIG00000010024	gpatch4 (ENSPKIG00000010081)	ENSPKIG00000010128	ENSPKIG00000010168	ENSPKIG00000010176	mef2d (ENSPKIG00000010252) #35	RHBG (ENSPKIG00000010394) #34	hapln2 (ENSPKIG00000010436)	bcan (ENSPKIG00000010476)	ISG20L2 (ENSPKIG00000010547)	mettl25b (ENSPKIG00000010567)	tlr18 (ENSPKIG00000010606)	si:ch211-113g11.6 (ENSPKIG00000010655)	lingo4b (ENSPKIG00000010708)	ctsk (ENSPKIG00000010719)
Osteoglossiformes	ANCESTRAL SPECIES	9	ENSGT00730000111185.db.b	ENSGT00940000159172.i	ENSGT00940000160276.k	ENSGT00870000136537	ENSGT00950000182940.b.a.b.a.b	ENSGT00940000165753.a	ENSGT00390000008158.b.b.a.a.q.a	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00390000008158.b.a.t	ENSGT00390000008158.b.b.a.a.r	ENSGT00940000155620.q #18	ENSGT00940000158230.b.b #20	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b.h #22	ENSGT00940000155333.B.b	ENSGT00390000007227.a	ENSGT00940000159463.l #35	ENSGT00950000182844.b.b.a.c #34	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00940000165314.b	ENSGT00940000154996.a.a.b	ENSGT00940000157759.db.a	ENSGT00940000155176.p	ENSGT00940000155176.o.a.n
Asian bonytongue	MODERN SPECIES	15	otud7b (ENSSFOG00015008954)	mtmr11 (ENSSFOG00015008876)	sf3b4 (ENSSFOG00015008864)	SV2A (ENSSFOG00015008824)	ENSSFOG00015029765	nr2f5 (ENSSFOG00015027367)	ENSSFOG00015008770	si:dkey-266f7.9 (ENSSFOG00015033274)	ENSSFOG00015008740	ENSSFOG00015008733	rpz4 (ENSSFOG00015008728)	UBQLN4 (ENSSFOG00015008691) #18	rab25a (ENSSFOG00015028188) #20	rab11al (ENSSFOG00015028707)	ENSSFOG00015030773	LMNA (ENSSFOG00015008546) #22	ENSSFOG00015008507	APOA1BP (ENSSFOG00015008464)	ENSSFOG00015008427	mef2d (ENSSFOG00015008372) #35	rhbg (ENSSFOG00015008244) #34	ENSSFOG00015008192	mrpl24 (ENSSFOG00015008161)	HDGF (ENSSFOG00015029454)	prcc (ENSSFOG00015008087)	ENSSFOG00015008049	ENSSFOG00015007739	mrpl9 (ENSSFOG00015008036)	si:ch211-113g11.6 (ENSSFOG00015007705)	lingo4a (ENSSFOG00015007697)	CTSK (ENSSFOG00015026714)
P. kingsleyae	MODERN SPECIES	256	ENSPKIG00000020616	mtmr11 (ENSPKIG00000020642)	sf3b4 (ENSPKIG00000020669)	SV2A (ENSPKIG00000020700)	nr2f5 (ENSPKIG00000020746)	ENSPKIG00000020762	si:dkey-266f7.9 (ENSPKIG00000020772)	ENSPKIG00000020790	ENSPKIG00000020802	ENSPKIG00000020809	rpz4 (ENSPKIG00000020827)	UBQLN4 (ENSPKIG00000020843) #18	rab25a (ENSPKIG00000020869) #20	rab11al (ENSPKIG00000020893)	ENSPKIG00000020911	LMNA (ENSPKIG00000020936) #22	ENSPKIG00000021015	naxe (ENSPKIG00000021115)	ENSPKIG00000021128 #35	rhbg (ENSPKIG00000021145) #34	ENSPKIG00000021193	mrpl24 (ENSPKIG00000021226)	HDGF (ENSPKIG00000021241)	prcc (ENSPKIG00000021265)	ENSPKIG00000021296	mrpl9 (ENSPKIG00000021327)	si:ch211-113g11.6 (ENSPKIG00000021361)	lingo4a (ENSPKIG00000021436)	CTSK (ENSPKIG00000021458)	ENSPKIG00000021515
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Amphiprion	ANCESTRAL SPECIES																	ENSGT00940000157244.b #22
Clown anemonefish	MODERN SPECIES	951															EYA4 (ENSAOCG00000020105)	ENSAOCG00000020116 #22	ENSAOCG00000001490 #22	naxe (ENSAOCG00000020174)	scn1bb (ENSAOCG00000020207)	ENSAOCG00000020253	ENSAOCG00000020278	GALR1 (ENSAOCG00000001499)	ENSAOCG00000020363
Elephant shark	MODERN SPECIES	925																ENSCMIG00000000282 #22