Euteleostomi	ANCESTRAL SPECIES	375													ENSGT00950000182888.b	ENSGT00940000154842.a.a	ENSGT00940000165492.a.a	ENSGT00390000020276 #22	ENSGT00940000154394.b.a.b	ENSGT00940000154394.b.a.a.a.b	ENSGT00730000111343	ENSGT00620000089226	ENSGT00950000183177.a.a.a.b	ENSGT00940000164907
Sarcopterygii	DUPLICATION
Sarcopterygii	ANCESTRAL SPECIES	378																ENSGT00390000020276.rb #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT01100000263773	ENSGT01090000260119	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a
Tetrapoda	ANCESTRAL SPECIES	212																ENSGT00390000020276.rb #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT01100000263773	ENSGT01090000260119	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a
Amniota	ANCESTRAL SPECIES	97	ENSGT00390000007901	ENSGT00530000068739	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01090000260119	ENSGT01100000263773	ENSGT01000000214440.A.b	ENSGT00950000183038.a.b.b.a	ENSGT00390000003561	ENSGT00550000075033	ENSGT00440000039028	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22
Mammalia	ANCESTRAL SPECIES	208															ENSGT00390000018540 #21	ENSGT00390000020276.rb #22
Theria	ANCESTRAL SPECIES	51															ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Eutheria	ANCESTRAL SPECIES	7	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Primates	ANCESTRAL SPECIES	9	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00950000183532	ENSGT00910000147417	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00950000183532	ENSGT00910000147417	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00490000044176.b.a.b	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00910000147417	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00490000044176.b.a.b	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00940000154314.k.a.a	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33
Hominidae	ANCESTRAL SPECIES	10	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00490000044176.b.a.b	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00940000154314.k.a.a	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00940000154314.k.a.a	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00940000155078.a.b.b.i
Homo/Pan group	ANCESTRAL SPECIES	27	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00940000154314.k.a.a	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00940000155078.a.b.b.i
Human	MODERN SPECIES	21	CREB3 (ENSG00000107175) #7	GBA2 (ENSG00000070610) #8	RGP1 (ENSG00000107185) #9	MSMP (ENSG00000215183) #10	NPR2 (ENSG00000159899) #11	SPAG8 (ENSG00000137098) #12	HINT2 (ENSG00000137133) #13	TMEM8B (ENSG00000137103) #14	FAM221B (ENSG00000204930) #15	OR13J1 (ENSG00000168828) #16	HRCT1 (ENSG00000196196) #17	SPAAR (ENSG00000235387) #18	OR2S2 (ENSG00000278889) #19	OR13C7 (ENSG00000243641) #20	RECK (ENSG00000122707) #21	GLIPR2 (ENSG00000122694) #22	CCIN (ENSG00000185972) #23	CLTA (ENSG00000122705) #24	GNE (ENSG00000159921) #25	RNF38 (ENSG00000137075) #26	MELK (ENSG00000165304) #27	PAX5 (ENSG00000196092) #28	ZCCHC7 (ENSG00000147905) #29	GRHPR (ENSG00000137106) #30	ZBTB5 (ENSG00000168795) #31	POLR1E (ENSG00000137054) #32	FBXO10 (ENSG00000147912) #33	TOMM5 (ENSG00000175768) #34	FRMPD1 (ENSG00000070601) #35	TRMT10B (ENSG00000165275) #36	EXOSC3 (ENSG00000107371) #37
Pan	ANCESTRAL SPECIES	26	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT00940000153341.b.p.a.a.a	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00940000154314.k.a.a	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00940000155078.a.b.b.i
Chimpanzee	MODERN SPECIES	22	MSMP (ENSPTRG00000034256) #10	NPR2 (ENSPTRG00000020921) #11	SPAG8 (ENSPTRG00000020922) #12	HINT2 (ENSPTRG00000020923) #13	FAM221B (ENSPTRG00000045649) #15	TMEM8B (ENSPTRG00000020924) #14	OR13J1 (ENSPTRG00000020925) #16	HRCT1 (ENSPTRG00000029270) #17	SPAAR (ENSPTRG00000043422) #18	ENSPTRG00000043077	ENSPTRG00000050991 ##20	ENSPTRG00000020927 ##20	ENSPTRG00000044733 ##20	RECK (ENSPTRG00000020928) #21	ENSPTRG00000048750	GLIPR2 (ENSPTRG00000042354) #22	CCIN (ENSPTRG00000029269) #23	CLTA (ENSPTRG00000020930) #24	GNE (ENSPTRG00000020931) #25	RNF38 (ENSPTRG00000020933) #26	MELK (ENSPTRG00000020934) #27	PAX5 (ENSPTRG00000020936) #28	ZCCHC7 (ENSPTRG00000020939) #29	GRHPR (ENSPTRG00000020940) #30	ZBTB5 (ENSPTRG00000047266) #31	ENSPTRG00000048138	POLR1E (ENSPTRG00000020944) #32	FBXO10 (ENSPTRG00000020945) #33	TOMM5 (ENSPTRG00000033875)	ENSPTRG00000040824	FRMPD1 (ENSPTRG00000020949) #35
Bonobo	MODERN SPECIES	22	RGP1 (ENSPPAG00000027240) #9	MSMP (ENSPPAG00000039857) #10	NPR2 (ENSPPAG00000030573) #11	SPAG8 (ENSPPAG00000000243) #12	HINT2 (ENSPPAG00000002836) #13	FAM221B (ENSPPAG00000034390) #15	ENSPPAG00000025794 #14	OR13J1 (ENSPPAG00000029896) #16	HRCT1 (ENSPPAG00000008396) #17	SPAAR (ENSPPAG00000023559) #18	ENSPPAG00000028526	ENSPPAG00000032404 ##20	ENSPPAG00000032978 ##20	RECK (ENSPPAG00000042522) #21	ENSPPAG00000043012	GLIPR2 (ENSPPAG00000036155) #22	CCIN (ENSPPAG00000001326) #23	CLTA (ENSPPAG00000040417) #24	GNE (ENSPPAG00000036755) #25	RNF38 (ENSPPAG00000037204) #26	MELK (ENSPPAG00000044135) #27	PAX5 (ENSPPAG00000031893) #28	ENSPPAG00000018679	ENSPPAG00000038294 #29	GRHPR (ENSPPAG00000037649) #30	ZBTB5 (ENSPPAG00000014277) #31	ENSPPAG00000023755	POLR1E (ENSPPAG00000034566) #32	FBXO10 (ENSPPAG00000030238) #33	ENSPPAG00000038758	ENSPPAG00000039725
Gorilla	MODERN SPECIES	22	RGP1 (ENSGGOG00000007370) #9	NPR2 (ENSGGOG00000011241) #11	SPAG8 (ENSGGOG00000011256) #12	HINT2 (ENSGGOG00000011265) #13	FAM221B (ENSGGOG00000011270) #15	ENSGGOG00000007705 #14	OR13J1 (ENSGGOG00000028587) #16	ENSGGOG00000043128	HRCT1 (ENSGGOG00000036981) #17	SPAAR (ENSGGOG00000039944) #18	ENSGGOG00000024966	ENSGGOG00000024643 ##20	ENSGGOG00000024475 ##20	ENSGGOG00000024545 ##20	RECK (ENSGGOG00000003313) #21	GLIPR2 (ENSGGOG00000003324) #22	CCIN (ENSGGOG00000027920) #23	CLTA (ENSGGOG00000013155) #24	GNE (ENSGGOG00000013160) #25	RNF38 (ENSGGOG00000016336) #26	MELK (ENSGGOG00000014746) #27	PAX5 (ENSGGOG00000003633) #28	ZCCHC7 (ENSGGOG00000034973) #29	GRHPR (ENSGGOG00000003710) #30	ZBTB5 (ENSGGOG00000043647) #31	ENSGGOG00000039378	POLR1E (ENSGGOG00000001882) #32	FBXO10 (ENSGGOG00000001885) #33	ENSGGOG00000036790	ENSGGOG00000023637	FRMPD1 (ENSGGOG00000006929) #35
Orangutan	MODERN SPECIES	22	RGP1 (ENSPPYG00000019085) #9	MSMP (ENSPPYG00000019084) #10	NPR2 (ENSPPYG00000019083) #11	SPAG8 (ENSPPYG00000038917) #12	ENSPPYG00000019082 #13	FAM221B (ENSPPYG00000019080) #15	TMEM8B (ENSPPYG00000019079) #14	OR13J1 (ENSPPYG00000019077) #16	HRCT1 (ENSPPYG00000019076) #17	SPAAR (ENSPPYG00000036015) #18	OR2S2 (ENSPPYG00000031501) #19	ENSPPYG00000032820	ENSPPYG00000035905 ##20	ENSPPYG00000031968 ##20	RECK (ENSPPYG00000019072) #21	GLIPR2 (ENSPPYG00000038726) #22	ENSPPYG00000019070 #23	CLTA (ENSPPYG00000019069) #24	GNE (ENSPPYG00000019068) #25	RNF38 (ENSPPYG00000019066) #26	MELK (ENSPPYG00000019065) #27	PAX5 (ENSPPYG00000019064) #28	ENSPPYG00000031854	ZCCHC7 (ENSPPYG00000029763) #29	GRHPR (ENSPPYG00000019063) #30	ZBTB5 (ENSPPYG00000019062) #31	ENSPPYG00000033856	POLR1E (ENSPPYG00000019061) #32	FBXO10 (ENSPPYG00000019060) #33	TOMM5 (ENSPPYG00000019059) #34	FRMPD1 (ENSPPYG00000019057) #35
Gibbon	MODERN SPECIES	23	ARHGEF39 (ENSNLEG00000004351)	CA9 (ENSNLEG00000031756)	TPM2 (ENSNLEG00000004274)	TLN1 (ENSNLEG00000004224)	CREB3 (ENSNLEG00000004179) #7	GBA2 (ENSNLEG00000004159) #8	MSMP (ENSNLEG00000004143) #10	RGP1 (ENSNLEG00000030639) #9	NPR2 (ENSNLEG00000004067) #11	ENSNLEG00000004051 #12	HINT2 (ENSNLEG00000033123) #13	ENSNLEG00000003987 #14	ENSNLEG00000028040 ##20	ENSNLEG00000034142 ##20	RECK (ENSNLEG00000003935) #21	GLIPR2 (ENSNLEG00000003915) #22	CCIN (ENSNLEG00000018371) #23	CLTA (ENSNLEG00000035456) #24	GNE (ENSNLEG00000003850) #25	RNF38 (ENSNLEG00000003808) #26	MELK (ENSNLEG00000003720) #27	ENSNLEG00000036046	PAX5 (ENSNLEG00000003664) #28	ZCCHC7 (ENSNLEG00000003641) #29	GRHPR (ENSNLEG00000003637) #30	ZBTB5 (ENSNLEG00000027095) #31	ENSNLEG00000028776	POLR1E (ENSNLEG00000003616) #32	FBXO10 (ENSNLEG00000003606) #33	ENSNLEG00000003604	FRMPD1 (ENSNLEG00000003565) #35
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00490000044176.b.a.b	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00490000044176.b.a.b	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Vervet Monkey	MODERN SPECIES	3	CREB3 (ENSCSAG00000010554) #7	GBA2 (ENSCSAG00000010566) #8	RGP1 (ENSCSAG00000010580) #9	MSMP (ENSCSAG00000010584) #10	NPR2 (ENSCSAG00000010612) #11	SPAG8 (ENSCSAG00000010595) #12	HINT2 (ENSCSAG00000010622) #13	FAM221B (ENSCSAG00000010633) #15	TMEM8B (ENSCSAG00000010650) #14	OR13J1 (ENSCSAG00000000450) #16	HRCT1 (ENSCSAG00000000451) #17	OR2S2 (ENSCSAG00000000452) #19	ENSCSAG00000000453 ##20	ENSCSAG00000000454 ##20	RECK (ENSCSAG00000010667) #21	GLIPR2 (ENSCSAG00000010680) #22	CCIN (ENSCSAG00000000455) #23	CLTA (ENSCSAG00000010688) #24	GNE (ENSCSAG00000010698) #25	ENSCSAG00000010707	RNF38 (ENSCSAG00000010719) #26	MELK (ENSCSAG00000010733) #27	PAX5 (ENSCSAG00000010751) #28	ZCCHC7 (ENSCSAG00000010760) #29	GRHPR (ENSCSAG00000010770) #30	ZBTB5 (ENSCSAG00000000456) #31	POLR1E (ENSCSAG00000010782) #32	FBXO10 (ENSCSAG00000010791) #33	FRMPD1 (ENSCSAG00000010803) #35	EXOSC3 (ENSCSAG00000010816) #37	TRMT10B (ENSCSAG00000010828) #36
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00950000183532	ENSGT00910000147417	ENSGT00940000159636 #28	ENSGT00490000044176.b.a.b	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00390000008099.w.a.b	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00490000044176.b.a.b	ENSGT00950000183041.B.e #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Cercopithecinae_d	ANCESTRAL SPECIES	77	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00390000008099.w.a.b	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00950000183532	ENSGT00910000147417
Sooty mangabey	MODERN SPECIES	276	RGP1 (ENSCATG00000013232) #9	MSMP (ENSCATG00000037759) #10	NPR2 (ENSCATG00000031252) #11	SPAG8 (ENSCATG00000011595) #12	HINT2 (ENSCATG00000033387) #13	FAM221B (ENSCATG00000029466) #15	TMEM8B (ENSCATG00000040477) #14	ENSCATG00000044927	SPAAR (ENSCATG00000024206) #18	OR2S2 (ENSCATG00000017622) #19	ENSCATG00000038116 ##20	ENSCATG00000021491 ##20	ENSCATG00000042772 #20	RECK (ENSCATG00000040650) #21	ENSCATG00000031795	GLIPR2 (ENSCATG00000022942) #22	CLTA (ENSCATG00000008578) #24	GNE (ENSCATG00000033005) #25	RNF38 (ENSCATG00000036565) #26	MELK (ENSCATG00000030556) #27	ENSCATG00000023502
Drill	MODERN SPECIES	1352								OR2S2 (ENSMLEG00000023691) #19	ENSMLEG00000032190 ##20	ENSMLEG00000026164 ##20	ENSMLEG00000028430 ##20	ENSMLEG00000033663 #20	ENSMLEG00000025863 ##20	ENSMLEG00000034309	RECK (ENSMLEG00000021606) #21	GLIPR2 (ENSMLEG00000039906) #22	CLTA (ENSMLEG00000035346) #24	GNE (ENSMLEG00000037723) #25	RNF38 (ENSMLEG00000041799) #26	MELK (ENSMLEG00000017868) #27	ENSMLEG00000004893	ENSMLEG00000040705
Olive baboon	MODERN SPECIES	4	MSMP (ENSPANG00000025427) #10	NPR2 (ENSPANG00000025560) #11	SPAG8 (ENSPANG00000025561) #12	HINT2 (ENSPANG00000025487) #13	FAM221B (ENSPANG00000025486) #15	TMEM8B (ENSPANG00000025485) #14	OR13J1 (ENSPANG00000040712) #16	ENSPANG00000029895	HRCT1 (ENSPANG00000016420) #17	SPAAR (ENSPANG00000031004) #18	OR2S2 (ENSPANG00000048777) #19	ENSPANG00000043392 ##20	ENSPANG00000040820 ##20	ENSPANG00000037927 ##20	RECK (ENSPANG00000025483) #21	ENSPANG00000025482 #22	CCIN (ENSPANG00000035902) #23	CLTA (ENSPANG00000025481) #24	GNE (ENSPANG00000025480) #25	RNF38 (ENSPANG00000025477) #26	MELK (ENSPANG00000025476) #27	PAX5 (ENSPANG00000025475) #28	ZCCHC7 (ENSPANG00000025472) #29	GRHPR (ENSPANG00000025471) #30	ZBTB5 (ENSPANG00000025562) #31	FBXO10 (ENSPANG00000025564) #33	ENSPANG00000035693	FRMPD1 (ENSPANG00000025572) #35	TRMT10B (ENSPANG00000025571) #36	EXOSC3 (ENSPANG00000025570) #37	DCAF10 (ENSPANG00000025569)
Macaca	ANCESTRAL SPECIES	10	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00950000183532	ENSGT00910000147417	ENSGT00940000159636 #28	ENSGT00490000044176.b.a.b	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197
Pig-tailed macaque	MODERN SPECIES	123	SPAG8 (ENSMNEG00000036560) #12	HINT2 (ENSMNEG00000044230) #13	FAM221B (ENSMNEG00000026402) #15	TMEM8B (ENSMNEG00000029741) #14	ENSMNEG00000042213	HRCT1 (ENSMNEG00000005459) #17	SPAAR (ENSMNEG00000028379) #18	OR2S2 (ENSMNEG00000011760) #19	ENSMNEG00000022492 ##20	ENSMNEG00000023391 ##20	ENSMNEG00000023469 ##20	ENSMNEG00000030720 #20	ENSMNEG00000028286 ##20	RECK (ENSMNEG00000042791) #21	ENSMNEG00000035362	GLIPR2 (ENSMNEG00000040198) #22	CLTA (ENSMNEG00000040828) #24	GNE (ENSMNEG00000038236) #25	RNF38 (ENSMNEG00000015510) #26	MELK (ENSMNEG00000031132) #27	ENSMNEG00000003390	ENSMNEG00000006404	ENSMNEG00000031949
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT01100000263539.a.a.b.b.b.b.a.b.a.a	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.b.a.a.a.a.a	ENSGT00940000154889 #27	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.a.b.a	ENSGT00910000147417	ENSGT00940000159636 #28	ENSGT00490000044176.b.a.b	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32
Rhesus	MODERN SPECIES	6	TLN1 (ENSMMUG00000031856)	CREB3 (ENSMMUG00000016328) #7	GBA2 (ENSMMUG00000016331) #8	RGP1 (ENSMMUG00000059406) #9	MSMP (ENSMMUG00000056937) #10	NPR2 (ENSMMUG00000016334) #11	SPAG8 (ENSMMUG00000016336) #12	HINT2 (ENSMMUG00000016337) #13	FAM221B (ENSMMUG00000031861) #15	TMEM8B (ENSMMUG00000031865) #14	OR13J1 (ENSMMUG00000062401) #16	HRCT1 (ENSMMUG00000016342) #17	SPAAR (ENSMMUG00000051938) #18	OR2S2 (ENSMMUG00000050498) #19	RECK (ENSMMUG00000022613) #21	GLIPR2 (ENSMMUG00000010213) #22	CCIN (ENSMMUG00000010214) #23	CLTA (ENSMMUG00000006132) #24	GNE (ENSMMUG00000006135) #25	RNF38 (ENSMMUG00000016605) #26	ENSMMUG00000031876	ENSMMUG00000051555	ENSMMUG00000054049	MELK (ENSMMUG00000003782) #27	ENSMMUG00000049717	ENSMMUG00000064539	PAX5 (ENSMMUG00000019639) #28	ENSMMUG00000057540	ZCCHC7 (ENSMMUG00000007421) #29	ENSMMUG00000063174	GRHPR (ENSMMUG00000045930) #30
Rhinopithecus	ANCESTRAL SPECIES	93	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00910000147640	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Golden snub-nosed monkey	MODERN SPECIES	1476												ENSRROG00000025369 ##20	ENSRROG00000008208 ##20	RECK (ENSRROG00000030578) #21	ENSRROG00000026854	GLIPR2 (ENSRROG00000038978) #22	CLTA (ENSRROG00000030514) #24	GNE (ENSRROG00000017631) #25	RNF38 (ENSRROG00000000382) #26	MELK (ENSRROG00000034888) #27	PAX5 (ENSRROG00000042990) #28	ENSRROG00000043949	ZCCHC7 (ENSRROG00000045031) #29	ENSRROG00000025223	GRHPR (ENSRROG00000031254) #30	ZBTB5 (ENSRROG00000027523) #31	POLR1E (ENSRROG00000031986) #32	ENSRROG00000043023	FBXO10 (ENSRROG00000045427) #33	ENSRROG00000030861	FRMPD1 (ENSRROG00000002835) #35
Black snub-nosed monkey	MODERN SPECIES	1089										HRCT1 (ENSRBIG00000012421) #17	SPAAR (ENSRBIG00000009618) #18	ENSRBIG00000032780 ##20	ENSRBIG00000038272 ##20	ENSRBIG00000028392 ##20	RECK (ENSRBIG00000028753) #21	GLIPR2 (ENSRBIG00000039318) #22	CCIN (ENSRBIG00000030773) #23	CLTA (ENSRBIG00000009677) #24	GNE (ENSRBIG00000030351) #25	RNF38 (ENSRBIG00000022057) #26	MELK (ENSRBIG00000037156) #27	PAX5 (ENSRBIG00000028782) #28
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00910000144115.a.ob.a	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228.e #26	ENSGT00940000154889 #27	ENSGT00910000147417	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364.m #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	545	GBA2 (ENSANAG00000032201) #8	RGP1 (ENSANAG00000030912) #9	MSMP (ENSANAG00000023053) #10	NPR2 (ENSANAG00000024485) #11	SPAG8 (ENSANAG00000026883) #12	HINT2 (ENSANAG00000036887) #13	FAM221B (ENSANAG00000032930) #15	TMEM8B (ENSANAG00000024608) #14	ENSANAG00000036930	ENSANAG00000004524 ##20	ENSANAG00000037018	ENSANAG00000017204 ##20	ENSANAG00000015713 ##20	ENSANAG00000035091	RECK (ENSANAG00000034480) #21	ENSANAG00000027083 #22	CLTA (ENSANAG00000037704) #24	GNE (ENSANAG00000032970) #25	RNF38 (ENSANAG00000021338) #26	MELK (ENSANAG00000036966) #27	ENSANAG00000038381	PAX5 (ENSANAG00000032771) #28	ZCCHC7 (ENSANAG00000029334) #29	ENSANAG00000026287	GRHPR (ENSANAG00000026381) #30	ZBTB5 (ENSANAG00000017161) #31	POLR1E (ENSANAG00000038046) #32	FBXO10 (ENSANAG00000038399) #33	TOMM5 (ENSANAG00000002761) #34	FRMPD1 (ENSANAG00000004683) #35	TRMT10B (ENSANAG00000033805) #36
Mas night monkey	MODERN SPECIES	966									KIF4B (ENSANAG00000035770)	ENSANAG00000032976	GEMIN5 (ENSANAG00000021595)	CNOT8 (ENSANAG00000022731)	FAXDC2 (ENSANAG00000025142)	ENSANAG00000011408	LARP1 (ENSANAG00000029949)	ENSANAG00000027998 #22	ENSANAG00000026082	ENSANAG00000031793	HAND1 (ENSANAG00000031480)	SAP30L (ENSANAG00000032719)	GALNT10 (ENSANAG00000033725)	MFAP3 (ENSANAG00000036628)	FAM114A2 (ENSANAG00000027510)	GRIA1 (ENSANAG00000029178)	ENSANAG00000011813	ENSANAG00000009431	NMUR2 (ENSANAG00000034858)	GLRA1 (ENSANAG00000023410)	ENSANAG00000036739	ENSANAG00000022416	ATOX1 (ENSANAG00000035371)
Cebidae	ANCESTRAL SPECIES	7	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00910000144115.a.ob.a	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228.e #26	ENSGT00940000154889 #27	ENSGT00910000147417	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364.m #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Cebidae_a	ANCESTRAL SPECIES	14	ENSGT00390000010998 #8	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT00730000111142.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228.e #26	ENSGT00940000154889 #27	ENSGT00910000147417	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364.m #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Capuchin	MODERN SPECIES	149	RGP1 (ENSCCAG00000033542) #9	MSMP (ENSCCAG00000026070) #10	NPR2 (ENSCCAG00000025156) #11	SPAG8 (ENSCCAG00000030639) #12	HINT2 (ENSCCAG00000023291) #13	FAM221B (ENSCCAG00000033517) #15	TMEM8B (ENSCCAG00000026388) #14	ENSCCAG00000015916 ##20	ENSCCAG00000019026 ##20	ENSCCAG00000022611	ENSCCAG00000015741 ##20	ENSCCAG00000037159 #20	ENSCCAG00000020271 ##20	ENSCCAG00000000257	RECK (ENSCCAG00000036189) #21	GLIPR2 (ENSCCAG00000018380) #22	CLTA (ENSCCAG00000024131) #24	GNE (ENSCCAG00000035548) #25	RNF38 (ENSCCAG00000031256) #26	ENSCCAG00000033135	MELK (ENSCCAG00000026497) #27	PAX5 (ENSCCAG00000003678) #28	ZCCHC7 (ENSCCAG00000033533) #29	GRHPR (ENSCCAG00000022290) #30	ZBTB5 (ENSCCAG00000019857) #31	POLR1E (ENSCCAG00000029460) #32	FBXO10 (ENSCCAG00000004496) #33	ENSCCAG00000025504 #34	FRMPD1 (ENSCCAG00000021264) #35	TRMT10B (ENSCCAG00000035254) #36	EXOSC3 (ENSCCAG00000010703) #37
Bolivian squirrel monkey	MODERN SPECIES	234	CREB3 (ENSSBOG00000030374) #7	GBA2 (ENSSBOG00000028994) #8	MSMP (ENSSBOG00000030188) #10	RGP1 (ENSSBOG00000032769) #9	ENSSBOG00000014862	NPR2 (ENSSBOG00000034785) #11	SPAG8 (ENSSBOG00000028865) #12	HINT2 (ENSSBOG00000025840) #13	FAM221B (ENSSBOG00000032974) #15	TMEM8B (ENSSBOG00000031660) #14	ENSSBOG00000025959 ##20	ENSSBOG00000010020 ##20	ENSSBOG00000032533	ENSSBOG00000030102 ##20	RECK (ENSSBOG00000031584) #21	GLIPR2 (ENSSBOG00000010739) #22	CLTA (ENSSBOG00000021395) #24	GNE (ENSSBOG00000026958) #25	ENSSBOG00000029936 #26
Marmoset	MODERN SPECIES		NPR2 (ENSCJAG00000009970) #11	SPAG8 (ENSCJAG00000074135) #12	HINT2 (ENSCJAG00000010068) #13	FAM221B (ENSCJAG00000010080) #15	TMEM8B (ENSCJAG00000010090) #14	OR13J1 (ENSCJAG00000065388) #16	HRCT1 (ENSCJAG00000062051) #17	SPAAR (ENSCJAG00000045403) #18	OR2S2 (ENSCJAG00000070819) #19	ENSCJAG00000084027 ##20	ENSCJAG00000080137 ##20	ENSCJAG00000069706 #20	ENSCJAG00000083986 ##20	ENSCJAG00000047626	RECK (ENSCJAG00000010143) #21	ENSCJAG00000040643 #22	CCIN (ENSCJAG00000010202) #23	CLTA (ENSCJAG00000010206) #24	GNE (ENSCJAG00000010234) #25	ENSCJAG00000083616	RNF38 (ENSCJAG00000010299) #26	ENSCJAG00000082746	ENSCJAG00000073637	ENSCJAG00000008906	ENSCJAG00000010362 #27	PAX5 (ENSCJAG00000010379) #28	ZCCHC7 (ENSCJAG00000010465) #29	GRHPR (ENSCJAG00000010474) #30	ZBTB5 (ENSCJAG00000010502) #31	POLR1E (ENSCJAG00000010512) #32	FBXO10 (ENSCJAG00000010535) #33
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	3771															OLIG3 (ENSTSYG00000031783)	ENSTSYG00000005136 #22
Tarsier	MODERN SPECIES	5263																ENSTSYG00000029479 #22	CLTA (ENSTSYG00000000440) #24	GNE (ENSTSYG00000001747) #25
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Bushbaby	MODERN SPECIES	287	MSMP (ENSOGAG00000033077) #10	NPR2 (ENSOGAG00000011822) #11	HINT2 (ENSOGAG00000011830) #13	FAM221B (ENSOGAG00000011833) #15	TMEM8B (ENSOGAG00000011837) #14	OR13J1 (ENSOGAG00000011843) #16	HRCT1 (ENSOGAG00000027973) #17	OR2S2 (ENSOGAG00000015378) #19	ENSOGAG00000015376 ##20	ENSOGAG00000024755 ##20	ENSOGAG00000030486 ##20	ENSOGAG00000032367 #20	ENSOGAG00000034036	ENSOGAG00000032943 ##20	RECK (ENSOGAG00000007846) #21	GLIPR2 (ENSOGAG00000007850) #22	CCIN (ENSOGAG00000029313) #23	CLTA (ENSOGAG00000025645) #24	GNE (ENSOGAG00000007858) #25
Lemuriformes	ANCESTRAL SPECIES	34	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Lemuriformes_a	ANCESTRAL SPECIES	35	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Coquerels sifaka	MODERN SPECIES	98	TPM2 (ENSPCOG00000028214)	TLN1 (ENSPCOG00000025559)	CREB3 (ENSPCOG00000025101) #7	GBA2 (ENSPCOG00000024712) #8	RGP1 (ENSPCOG00000013601) #9	MSMP (ENSPCOG00000016639) #10	NPR2 (ENSPCOG00000003395) #11	SPAG8 (ENSPCOG00000027530) #12	HINT2 (ENSPCOG00000023948) #13	FAM221B (ENSPCOG00000017732) #15	ENSPCOG00000015311 #14	ENSPCOG00000002662 ##20	ENSPCOG00000001219 #20	ENSPCOG00000009511 ##20	RECK (ENSPCOG00000020133) #21	GLIPR2 (ENSPCOG00000024787) #22	CLTA (ENSPCOG00000019676) #24	ENSPCOG00000022942	GNE (ENSPCOG00000020415) #25	RNF38 (ENSPCOG00000027648) #26	MELK (ENSPCOG00000019710) #27	ENSPCOG00000000053	PAX5 (ENSPCOG00000022547) #28	ENSPCOG00000017761	GRHPR (ENSPCOG00000013619) #30	ZBTB5 (ENSPCOG00000013855) #31	POLR1E (ENSPCOG00000027448) #32	FBXO10 (ENSPCOG00000004412) #33	ENSPCOG00000022602	FRMPD1 (ENSPCOG00000019649) #35	TRMT10B (ENSPCOG00000003391) #36
Greater bamboo lemur	MODERN SPECIES	729	SPAG8 (ENSPSMG00000003997) #12	HINT2 (ENSPSMG00000003971) #13	FAM221B (ENSPSMG00000003964) #15	ENSPSMG00000003952 #14	ENSPSMG00000003923	OR13J1 (ENSPSMG00000003911) #16	HRCT1 (ENSPSMG00000003909) #17	SPAAR (ENSPSMG00000003901) #18	OR2S2 (ENSPSMG00000003899) #19	ENSPSMG00000003893 ##20	ENSPSMG00000003878 ##20	ENSPSMG00000003874 ##20	ENSPSMG00000003872 #20	ENSPSMG00000003852	RECK (ENSPSMG00000003805) #21	GLIPR2 (ENSPSMG00000003735) #22	CCIN (ENSPSMG00000003684) #23	CLTA (ENSPSMG00000003608) #24	ENSPSMG00000003535	GNE (ENSPSMG00000003374) #25	RNF38 (ENSPSMG00000003195) #26	MELK (ENSPSMG00000002545) #27	PAX5 (ENSPSMG00000002225) #28	ENSPSMG00000002140
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	14	LGI4 (ENSMICG00000031932)	ENSMICG00000044563	HPN (ENSMICG00000002167)	SCN1B (ENSMICG00000012087)	GRAMD1A (ENSMICG00000001389)	ZNF792 (ENSMICG00000043081)	ZNF30 (ENSMICG00000028219)	ZNF599 (ENSMICG00000017042)	ENSMICG00000026623	ENSMICG00000046177	WTIP (ENSMICG00000036036)	UBA2 (ENSMICG00000011636)	ENSMICG00000045340	ENSMICG00000011620	GARRE1 (ENSMICG00000011605)	ENSMICG00000035342 #22	ENSMICG00000011598	KCTD15 (ENSMICG00000034643)	CHST8 (ENSMICG00000044697)	PEPD (ENSMICG00000013428)	CEBPG (ENSMICG00000045141)	CEBPA (ENSMICG00000029472)	SLC7A10 (ENSMICG00000045526)	LRP3 (ENSMICG00000032993)	WDR88 (ENSMICG00000017262)	GPATCH1 (ENSMICG00000004829)	ENSMICG00000028269	RHPN2 (ENSMICG00000003663)	FAAP24 (ENSMICG00000044088)	CEP89 (ENSMICG00000003646)	SLC7A9 (ENSMICG00000046921)
Mouse lemur	MODERN SPECIES	1	GBA2 (ENSMICG00000002543) #8	RGP1 (ENSMICG00000002551) #9	MSMP (ENSMICG00000046903) #10	NPR2 (ENSMICG00000002555) #11	SPAG8 (ENSMICG00000002567) #12	HINT2 (ENSMICG00000002572) #13	FAM221B (ENSMICG00000036610) #15	ENSMICG00000002579 #14	ENSMICG00000044905 ##20	ENSMICG00000045648 ##20	ENSMICG00000044510 ##20	ENSMICG00000031092	ENSMICG00000045143 #20	ENSMICG00000026884 ##20	RECK (ENSMICG00000045799) #21	ENSMICG00000017673 #22	CLTA (ENSMICG00000017675) #24	GNE (ENSMICG00000017676) #25	ENSMICG00000029152	RNF38 (ENSMICG00000017677) #26	MELK (ENSMICG00000017678) #27	ENSMICG00000046205	ENSMICG00000000119 ##20	ENSMICG00000047170 ##20	NIPSNAP3A (ENSMICG00000001137)	NIPSNAP3B (ENSMICG00000035219)	ABCA1 (ENSMICG00000006176)	SLC44A1 (ENSMICG00000012375)	FSD1L (ENSMICG00000001704)	FKTN (ENSMICG00000001709)	TAL2 (ENSMICG00000045486)
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Tree shrew	MODERN SPECIES	3735															RECK (ENSTBEG00000008707) #21	GLIPR2 (ENSTBEG00000009276) #22	CCIN (ENSTBEG00000009476) #23
Glires	ANCESTRAL SPECIES	9	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Lagomorpha	ANCESTRAL SPECIES	23	ENSGT01030000234542.b.b.a.b	ENSGT00940000157006	ENSGT00940000160343 #7	ENSGT00390000010998 #8	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Rabbit	MODERN SPECIES		GBA2 (ENSOCUG00000010248) #8	MSMP (ENSOCUG00000027782) #10	RGP1 (ENSOCUG00000010265) #9	NPR2 (ENSOCUG00000006453) #11	SPAG8 (ENSOCUG00000006464) #12	ENSOCUG00000027206 #13	TMEM8B (ENSOCUG00000016636) #14	ENSOCUG00000016631 #15	ENSOCUG00000026831	OR13J1 (ENSOCUG00000016656) #16	ENSOCUG00000034207 #20	ENSOCUG00000027037 #20	ENSOCUG00000034869 #20	ENSOCUG00000011572 #20	RECK (ENSOCUG00000015652) #21	GLIPR2 (ENSOCUG00000000007) #22	CCIN (ENSOCUG00000000008) #23	CLTA (ENSOCUG00000000009) #24	GNE (ENSOCUG00000000010) #25	ENSOCUG00000014164 #26	MELK (ENSOCUG00000001041) #27	PAX5 (ENSOCUG00000012281) #28	ENSOCUG00000030564	ENSOCUG00000022333	ZCCHC7 (ENSOCUG00000001002) #29	GRHPR (ENSOCUG00000007031) #30	ZBTB5 (ENSOCUG00000007041) #31	POLR1E (ENSOCUG00000024773) #32	FBXO10 (ENSOCUG00000001992) #33	TOMM5 (ENSOCUG00000001996) #34	FRMPD1 (ENSOCUG00000000068) #35
Pika	MODERN SPECIES	10341																GLIPR2 (ENSOPRG00000009301) #22	CCIN (ENSOPRG00000009318) #23
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	371	Steap3 (ENSDORG00000002627)	ENSDORG00000026249	Tmem37 (ENSDORG00000003687)	Sctr (ENSDORG00000003688)	ENSDORG00000025111	Tmem177 (ENSDORG00000002047)	ENSDORG00000029148	Epb41l5 (ENSDORG00000010402)	Tmem185b (ENSDORG00000024131)	Ralb (ENSDORG00000012929)	Inhbb (ENSDORG00000000026)	Gli2 (ENSDORG00000008299)	Tfcp2l1 (ENSDORG00000004265)	Clasp1 (ENSDORG00000004810)	Tsn (ENSDORG00000026251)	ENSDORG00000029691 #22	Gypc (ENSDORG00000009142)	Bin1 (ENSDORG00000007085)	Ercc3 (ENSDORG00000004671)	Map3k2 (ENSDORG00000028775)	ENSDORG00000004000	Ccdc115 (ENSDORG00000024377)	Imp4 (ENSDORG00000010685)	Ptpn18 (ENSDORG00000010682)	ENSDORG00000013250	Amer3 (ENSDORG00000023726)	ENSDORG00000026679
Kangaroo rat	MODERN SPECIES	414	Car9 (ENSDORG00000014587)	Tpm2 (ENSDORG00000006246)	Tln1 (ENSDORG00000006249)	Creb3 (ENSDORG00000029821) #7	Gba2 (ENSDORG00000006257) #8	Rgp1 (ENSDORG00000006258) #9	Msmp (ENSDORG00000025071) #10	Npr2 (ENSDORG00000006262) #11	Hint2 (ENSDORG00000006268) #13	ENSDORG00000006271 #14	Or13j1 (ENSDORG00000006274) #16	Hrct1 (ENSDORG00000029256) #17	ENSDORG00000015734 ##20	Or13c7c (ENSDORG00000026683) #20	Reck (ENSDORG00000012827) #21	ENSDORG00000012831 #22	Ccin (ENSDORG00000012835) #23	Clta (ENSDORG00000005019) #24	Gne (ENSDORG00000005022) #25	Rnf38 (ENSDORG00000005357) #26	ENSDORG00000028581	Melk (ENSDORG00000015636) #27	Pax5 (ENSDORG00000015818) #28	ENSDORG00000013166 #29	Grhpr (ENSDORG00000013167) #30	Zbtb5 (ENSDORG00000013170) #31	ENSDORG00000026463 #32	Fbxo10 (ENSDORG00000015479) #33	ENSDORG00000028709 #34	Frmpd1 (ENSDORG00000014364) #35	Trmt10b (ENSDORG00000014365) #36
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Lesser Egyptian jerboa	MODERN SPECIES	66	Arhgef39 (ENSJJAG00000010069)	Car9 (ENSJJAG00000009793)	ENSJJAG00000000463	Tln1 (ENSJJAG00000007186)	Creb3 (ENSJJAG00000003441) #7	Gba2 (ENSJJAG00000020885) #8	Msmp (ENSJJAG00000004151) #10	Rgp1 (ENSJJAG00000016667) #9	Npr2 (ENSJJAG00000021290) #11	Spag8 (ENSJJAG00000016823) #12	Hint2 (ENSJJAG00000005863) #13	ENSJJAG00000018868 #15	ENSJJAG00000013795 #14	Or13e8 (ENSJJAG00000012082)	Reck (ENSJJAG00000022950) #21	Glipr2 (ENSJJAG00000018465) #22	Ccin (ENSJJAG00000002839) #23	Pax5 (ENSJJAG00000018900) #28	ENSJJAG00000010512 #29	Polr1e (ENSJJAG00000020731) #32	Fbxo10 (ENSJJAG00000016171) #33	ENSJJAG00000011290 #34	Frmpd1 (ENSJJAG00000014679) #35	ENSJJAG00000011255	Shb (ENSJJAG00000000259)	Aldh1b1 (ENSJJAG00000002242)	Stra6l (ENSJJAG00000014770)	Ccdc180 (ENSJJAG00000020108)	Tdrd7 (ENSJJAG00000012908)	Tmod1 (ENSJJAG00000006511)	Tstd2 (ENSJJAG00000018130)
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Cricetinae	ANCESTRAL SPECIES	21	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Golden Hamster	MODERN SPECIES	703	Tln1 (ENSMAUG00000003449)	Creb3 (ENSMAUG00000013011) #7	Gba2 (ENSMAUG00000019050) #8	Rgp1 (ENSMAUG00000004266) #9	Msmp (ENSMAUG00000007922) #10	Npr2 (ENSMAUG00000019907) #11	Spag8 (ENSMAUG00000015839) #12	Hint2 (ENSMAUG00000008164) #13	Fam221b (ENSMAUG00000017909) #15	Tmem8b (ENSMAUG00000018119) #14	Or13j1 (ENSMAUG00000009473) #16	Or13c7b (ENSMAUG00000008555) ##20	Or13c7c (ENSMAUG00000008725) #20	Or13c7 (ENSMAUG00000008518) ##20	Reck (ENSMAUG00000002463) #21	Glipr2 (ENSMAUG00000013684) #22	Ccin (ENSMAUG00000008789) #23	Clta (ENSMAUG00000019878) #24	Gne (ENSMAUG00000017611) #25	ENSMAUG00000015650	Rnf38 (ENSMAUG00000022251) #26	Melk (ENSMAUG00000010420) #27	Pax5 (ENSMAUG00000020146) #28	Zcchc7 (ENSMAUG00000019812) #29	Grhpr (ENSMAUG00000011406) #30	Zbtb5 (ENSMAUG00000011435) #31	Polr1e (ENSMAUG00000021044) #32	Fbxo10 (ENSMAUG00000021774) #33	ENSMAUG00000007418 #34	Frmpd1 (ENSMAUG00000001981) #35	Trmt10b (ENSMAUG00000014543) #36
Chinese hamster chok1gshd	MODERN SPECIES	111	Npr2 (ENSCGRG00001002437) #11	ENSCGRG00001023642 #12	Hint2 (ENSCGRG00001022361) #13	Fam221b (ENSCGRG00001021843) #15	Tmem8b (ENSCGRG00001015077) #14	Or13e8 (ENSCGRG00001003201)	Or13j1 (ENSCGRG00001004497) #16	Hrct1 (ENSCGRG00001004997) #17	Spaar (ENSCGRG00001003061) #18	Or13c7d (ENSCGRG00001004670) ##20	Or13c7e-ps1 (ENSCGRG00001006035) ##20	Or13c7b (ENSCGRG00001005118) ##20	Or13c7c (ENSCGRG00001006740) #20	Or13c7 (ENSCGRG00001008125) ##20	Reck (ENSCGRG00001009973) #21	Glipr2 (ENSCGRG00001024271) #22	Ccin (ENSCGRG00001004610) #23	Clta (ENSCGRG00001019395) #24	Gne (ENSCGRG00001017139) #25	Rnf38 (ENSCGRG00001010268) #26	Melk (ENSCGRG00001005421) #27	Pax5 (ENSCGRG00001022968) #28	Zcchc7 (ENSCGRG00001018503) #29	Grhpr (ENSCGRG00001013235) #30	Zbtb5 (ENSCGRG00001005675) #31	Polr1e (ENSCGRG00001006197) #32	Fbxo10 (ENSCGRG00001004805) #33	ENSCGRG00001024499 #34	Frmpd1 (ENSCGRG00001012628) #35	Trmt10b (ENSCGRG00001006333) #36	Exosc3 (ENSCGRG00001001507) #37
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000154371.a #10	ENSGT01100000267037	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Prairie vole	MODERN SPECIES	355	Creb3 (ENSMOCG00000023032) #7	Gba2 (ENSMOCG00000016185) #8	Rgp1 (ENSMOCG00000000839) #9	Msmp (ENSMOCG00000008995) #10	Npr2 (ENSMOCG00000015469) #11	Spag8 (ENSMOCG00000020967) #12	Hint2 (ENSMOCG00000022371) #13	Fam221b (ENSMOCG00000023008) #15	Tmem8b (ENSMOCG00000015023) #14	Or13j1 (ENSMOCG00000001902) #16	ENSMOCG00000010848	Or13c7e-ps1 (ENSMOCG00000002017) ##20	Or13c7b (ENSMOCG00000001742) ##20	Or13c7 (ENSMOCG00000005825) ##20	Reck (ENSMOCG00000012329) #21	Glipr2 (ENSMOCG00000012349) #22	Ccin (ENSMOCG00000008266) #23	Clta (ENSMOCG00000018642) #24	Gne (ENSMOCG00000013723) #25	Rnf38 (ENSMOCG00000021070) #26	Melk (ENSMOCG00000018453) #27	Pax5 (ENSMOCG00000017791) #28	Zcchc7 (ENSMOCG00000017184) #29	Grhpr (ENSMOCG00000013657) #30	Zbtb5 (ENSMOCG00000001112) #31	Polr1e (ENSMOCG00000012920) #32	Fbxo10 (ENSMOCG00000015296) #33	ENSMOCG00000020239 #34	Frmpd1 (ENSMOCG00000012183) #35	Trmt10b (ENSMOCG00000016559) #36	Exosc3 (ENSMOCG00000018110) #37
Northern American deer mouse	MODERN SPECIES	11	Msmp (ENSPEMG00000009985) #10	ENSPEMG00000025084	Npr2 (ENSPEMG00000008535) #11	Spag8 (ENSPEMG00000008861) #12	Hint2 (ENSPEMG00000014390) #13	Fam221b (ENSPEMG00000018305) #15	Tmem8b (ENSPEMG00000017226) #14	Or13e8 (ENSPEMG00000031317)	Or13j1 (ENSPEMG00000006836) #16	Hrct1 (ENSPEMG00000030660) #17	Spaar (ENSPEMG00000030980) #18	ENSPEMG00000027811 ##20	ENSPEMG00000006666 ##20	ENSPEMG00000029865 ##20	Reck (ENSPEMG00000016931) #21	Glipr2 (ENSPEMG00000008180) #22	Ccin (ENSPEMG00000005922) #23	Clta (ENSPEMG00000016605) #24	Gne (ENSPEMG00000016886) #25	Rnf38 (ENSPEMG00000002845) #26	ENSPEMG00000027413	Melk (ENSPEMG00000015387) #27	Pax5 (ENSPEMG00000013014) #28	Zcchc7 (ENSPEMG00000017839) #29	Grhpr (ENSPEMG00000012140) #30	Zbtb5 (ENSPEMG00000012944) #31	Polr1e (ENSPEMG00000019151) #32	Fbxo10 (ENSPEMG00000016867) #33	ENSPEMG00000013814 #34	ENSPEMG00000030225	Frmpd1 (ENSPEMG00000014452) #35
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Mus	ANCESTRAL SPECIES	3	ENSGT01100000267037	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT01100000267037	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Ryukyu mouse	MODERN SPECIES	13	Creb3 (MGP_CAROLIEiJ_G0025942) #7	Gba2 (MGP_CAROLIEiJ_G0025943) #8	Rgp1 (MGP_CAROLIEiJ_G0025944) #9	Msmp (MGP_CAROLIEiJ_G0025945) #10	Npr2 (MGP_CAROLIEiJ_G0025946) #11	Spag8 (MGP_CAROLIEiJ_G0025947) #12	Hint2 (MGP_CAROLIEiJ_G0025948) #13	Fam221b (MGP_CAROLIEiJ_G0025949) #15	Tmem8b (MGP_CAROLIEiJ_G0025950) #14	Or13e8 (MGP_CAROLIEiJ_G0025951)	Or13j1 (MGP_CAROLIEiJ_G0025952) #16	Hrct1 (MGP_CAROLIEiJ_G0025953) #17	MGP_CAROLIEiJ_G0025954 #20	Or13c7 (MGP_CAROLIEiJ_G0025955) ##20	Reck (MGP_CAROLIEiJ_G0025956) #21	Glipr2 (MGP_CAROLIEiJ_G0025957) #22	Ccin (MGP_CAROLIEiJ_G0025958) #23	Clta (MGP_CAROLIEiJ_G0025959) #24	Gne (MGP_CAROLIEiJ_G0025960) #25	Rnf38 (MGP_CAROLIEiJ_G0025961) #26	Melk (MGP_CAROLIEiJ_G0025962) #27	Pax5 (MGP_CAROLIEiJ_G0025963) #28	Zcchc7 (MGP_CAROLIEiJ_G0025964) #29	Grhpr (MGP_CAROLIEiJ_G0025965) #30	Zbtb5 (MGP_CAROLIEiJ_G0025966) #31	Polr1e (MGP_CAROLIEiJ_G0025967) #32	Fbxo10 (MGP_CAROLIEiJ_G0025968) #33	Frmpd1 (MGP_CAROLIEiJ_G0025969) #35	Trmt10b (MGP_CAROLIEiJ_G0025970) #36	Exosc3 (MGP_CAROLIEiJ_G0025971) #37	Dcaf10 (MGP_CAROLIEiJ_G0025972)
Mus_B	ANCESTRAL SPECIES	5	ENSGT01100000267037	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Mouse	MODERN SPECIES	13	Npr2 (ENSMUSG00000028469) #11	Spag8 (ENSMUSG00000066196) #12	Hint2 (ENSMUSG00000028470) #13	Fam221b (ENSMUSG00000043633) #15	Tmem8b (ENSMUSG00000078716) #14	Or13e8 (ENSMUSG00000050215)	Or13j1 (ENSMUSG00000046450) #16	Hrct1 (ENSMUSG00000071001) #17	Spaar (ENSMUSG00000028475) #18	Or13c7d (ENSMUSG00000044801) ##20	Or13c7e-ps1 (ENSMUSG00000111338) ##20	Or13c7b (ENSMUSG00000110970) ##20	Or13c7c (ENSMUSG00000111611) #20	Or13c7 (ENSMUSG00000071000) ##20	Reck (ENSMUSG00000028476) #21	Glipr2 (ENSMUSG00000028480) #22	Ccin (ENSMUSG00000070999) #23	Clta (ENSMUSG00000028478) #24	Gne (ENSMUSG00000028479) #25	Rnf38 (ENSMUSG00000035696) #26	Melk (ENSMUSG00000035683) #27	Pax5 (ENSMUSG00000014030) #28	Zcchc7 (ENSMUSG00000035649) #29	Grhpr (ENSMUSG00000035637) #30	Zbtb5 (ENSMUSG00000049657) #31	Polr1e (ENSMUSG00000028318) #32	Fbxo10 (ENSMUSG00000048232) #33	Tomm5 (ENSMUSG00000078713)	Frmpd1 (ENSMUSG00000035615) #35	Trmt10b (ENSMUSG00000035601) #36	Exosc3 (ENSMUSG00000028322) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT01100000267037	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Steppe mouse	MODERN SPECIES	3331	Msmp (ENSMSIG00000019273) #10	ENSMSIG00000019283	Npr2 (ENSMSIG00000019296) #11	Spag8 (ENSMSIG00000019371) #12	Hint2 (ENSMSIG00000019376) #13	Fam221b (ENSMSIG00000019380) #15	Tmem8b (ENSMSIG00000019402) #14	Or13e8 (ENSMSIG00000019462)	Or13j1 (ENSMSIG00000019465) #16	Hrct1 (ENSMSIG00000019471) #17	Spaar (ENSMSIG00000019477) #18	Or13c7b (ENSMSIG00000019482) ##20	Or13c7c (ENSMSIG00000019498) #20	Or13c7 (ENSMSIG00000019512) ##20	Reck (ENSMSIG00000019518) #21	Glipr2 (ENSMSIG00000019558) #22	Ccin (ENSMSIG00000019576) #23	Clta (ENSMSIG00000019584) #24	Gne (ENSMSIG00000019664) #25	ENSMSIG00000019729	Rnf38 (ENSMSIG00000019773) #26	Melk (ENSMSIG00000019831) #27	Pax5 (ENSMSIG00000019898) #28	Zcchc7 (ENSMSIG00000019944) #29	ENSMSIG00000019971	Grhpr (ENSMSIG00000019984) #30	Zbtb5 (ENSMSIG00000019997) #31	Polr1e (ENSMSIG00000020005) #32	Fbxo10 (ENSMSIG00000020124) #33	ENSMSIG00000020129 #34	Frmpd1 (ENSMSIG00000020143) #35
spretus	MODERN SPECIES	13	Rgp1 (MGP_SPRETEiJ_G0026905) #9	Msmp (MGP_SPRETEiJ_G0026906) #10	Npr2 (MGP_SPRETEiJ_G0026907) #11	Spag8 (MGP_SPRETEiJ_G0026908) #12	Hint2 (MGP_SPRETEiJ_G0026909) #13	Fam221b (MGP_SPRETEiJ_G0026910) #15	Tmem8b (MGP_SPRETEiJ_G0026911) #14	Or13e8 (MGP_SPRETEiJ_G0026912)	Or13j1 (MGP_SPRETEiJ_G0026913) #16	Hrct1 (MGP_SPRETEiJ_G0026914) #17	Or13c7d (MGP_SPRETEiJ_G0026915) ##20	Or13c7b (MGP_SPRETEiJ_G0026916) ##20	Or13c7c (MGP_SPRETEiJ_G0026917) #20	Or13c7 (MGP_SPRETEiJ_G0026918) ##20	Reck (MGP_SPRETEiJ_G0026919) #21	Glipr2 (MGP_SPRETEiJ_G0026920) #22	Ccin (MGP_SPRETEiJ_G0026921) #23	Clta (MGP_SPRETEiJ_G0026922) #24	Gne (MGP_SPRETEiJ_G0026923) #25	Rnf38 (MGP_SPRETEiJ_G0026924) #26	Melk (MGP_SPRETEiJ_G0026925) #27	Pax5 (MGP_SPRETEiJ_G0026926) #28	Zcchc7 (MGP_SPRETEiJ_G0026927) #29	Grhpr (MGP_SPRETEiJ_G0026928) #30	Zbtb5 (MGP_SPRETEiJ_G0026929) #31	Polr1e (MGP_SPRETEiJ_G0026930) #32	Fbxo10 (MGP_SPRETEiJ_G0026931) #33	Frmpd1 (MGP_SPRETEiJ_G0026932) #35	Trmt10b (MGP_SPRETEiJ_G0026933) #36	Exosc3 (MGP_SPRETEiJ_G0026934) #37	Dcaf10 (MGP_SPRETEiJ_G0026935)
Shrew mouse	MODERN SPECIES	14	Rgp1 (MGP_PahariEiJ_G0024089) #9	Msmp (MGP_PahariEiJ_G0024090) #10	Npr2 (MGP_PahariEiJ_G0024091) #11	MGP_PahariEiJ_G0024092 #12	Hint2 (MGP_PahariEiJ_G0024093) #13	Fam221b (MGP_PahariEiJ_G0024094) #15	Tmem8b (MGP_PahariEiJ_G0024095) #14	Or13e8 (MGP_PahariEiJ_G0024096)	Or13j1 (MGP_PahariEiJ_G0024097) #16	Hrct1 (MGP_PahariEiJ_G0024098) #17	Or13c7d (MGP_PahariEiJ_G0024099) ##20	Or13c7b (MGP_PahariEiJ_G0024100) ##20	MGP_PahariEiJ_G0024101 #20	Or13c7 (MGP_PahariEiJ_G0024102) ##20	Reck (MGP_PahariEiJ_G0024103) #21	Glipr2 (MGP_PahariEiJ_G0024104) #22	Ccin (MGP_PahariEiJ_G0024105) #23	Clta (MGP_PahariEiJ_G0024106) #24	Gne (MGP_PahariEiJ_G0024107) #25	Rnf38 (MGP_PahariEiJ_G0024108) #26	Melk (MGP_PahariEiJ_G0024109) #27	Pax5 (MGP_PahariEiJ_G0024110) #28	Zcchc7 (MGP_PahariEiJ_G0024111) #29	Grhpr (MGP_PahariEiJ_G0024112) #30	Zbtb5 (MGP_PahariEiJ_G0024113) #31	Polr1e (MGP_PahariEiJ_G0024114) #32	MGP_PahariEiJ_G0024115 #33	Frmpd1 (MGP_PahariEiJ_G0024116) #35	Trmt10b (MGP_PahariEiJ_G0024117) #36	Exosc3 (MGP_PahariEiJ_G0024118) #37	Dcaf10 (MGP_PahariEiJ_G0024119)
Rat	MODERN SPECIES	15	Spag8 (ENSRNOG00000032539) #12	Hint2 (ENSRNOG00000015866) #13	Fam221b (ENSRNOG00000025453) #15	Tmem8b (ENSRNOG00000015664) #14	Or13e8 (ENSRNOG00000015652)	Or13j1 (ENSRNOG00000066545) #16	Hrct1 (ENSRNOG00000039336) #17	ENSRNOG00000070391 #18	Or13c7d (ENSRNOG00000062897) ##20	Or13c7e (ENSRNOG00000065792) ##20	Or13c7b (ENSRNOG00000063480) ##20	Or13c7c (ENSRNOG00000070597) #20	Or13c7 (ENSRNOG00000068857) ##20	Reck (ENSRNOG00000014863) #21	ENSRNOG00000070166	Glipr2 (ENSRNOG00000014838) #22	Ccin (ENSRNOG00000014831) #23	Clta (ENSRNOG00000014635) #24	Gne (ENSRNOG00000014365) #25	Rnf38 (ENSRNOG00000013956) #26	Melk (ENSRNOG00000013598) #27	LOC100359916 (ENSRNOG00000013579)	Pax5 (ENSRNOG00000024729) #28	Zcchc7 (ENSRNOG00000013078) #29	Grhpr (ENSRNOG00000012794) #30	Zbtb5 (ENSRNOG00000012726) #31	Polr1e (ENSRNOG00000012664) #32	Fbxo10 (ENSRNOG00000012634) #33	Tomm5 (ENSRNOG00000062108) #34	Frmpd1 (ENSRNOG00000012546) #35	Trmt10b (ENSRNOG00000012454) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1399													Or13c7b (ENSNGAG00000000272) ##20	Or13c7c (ENSNGAG00000014920) #20	Reck (ENSNGAG00000000317) #21	Glipr2 (ENSNGAG00000017672) #22	Ccin (ENSNGAG00000014353) #23	Clta (ENSNGAG00000000463) #24	Gne (ENSNGAG00000013811) #25	Rnf38 (ENSNGAG00000016714) #26	ENSNGAG00000015087	Melk (ENSNGAG00000017903) #27	ENSNGAG00000000934	Pax5 (ENSNGAG00000011551) #28	Zcchc7 (ENSNGAG00000001898) #29	Grhpr (ENSNGAG00000018848) #30	Zbtb5 (ENSNGAG00000013653) #31	Polr1e (ENSNGAG00000002520) #32	Fbxo10 (ENSNGAG00000018904) #33	ENSNGAG00000017070 #34	Frmpd1 (ENSNGAG00000016054) #35
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b.a #35	ENSGT00950000183035.b.b #35	ENSGT00530000063169.b.a #36
Marmotini	ANCESTRAL SPECIES	1	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00960000190987	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Marmotini_b	ANCESTRAL SPECIES	2	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00960000190987	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Squirrel	MODERN SPECIES	124	RGP1 (ENSSTOG00000005260) #9	MSMP (ENSSTOG00000019953) #10	NPR2 (ENSSTOG00000006885) #11	SPAG8 (ENSSTOG00000031721) #12	HINT2 (ENSSTOG00000006975) #13	FAM221B (ENSSTOG00000026697) #15	TMEM8B (ENSSTOG00000007004) #14	ENSSTOG00000007067	OR13J1 (ENSSTOG00000019968) #16	HRCT1 (ENSSTOG00000029426) #17	ENSSTOG00000022728 ##20	ENSSTOG00000027055 ##20	ENSSTOG00000019481 #20	ENSSTOG00000028123 ##20	RECK (ENSSTOG00000004971) #21	GLIPR2 (ENSSTOG00000005016) #22	CCIN (ENSSTOG00000022524) #23	CLTA (ENSSTOG00000005034) #24	GNE (ENSSTOG00000005049) #25	RNF38 (ENSSTOG00000005075) #26	MELK (ENSSTOG00000005106) #27	PAX5 (ENSSTOG00000024354) #28	ZCCHC7 (ENSSTOG00000030723) #29	GRHPR (ENSSTOG00000009804) #30	ZBTB5 (ENSSTOG00000027806) #31	POLR1E (ENSSTOG00000009810) #32	FBXO10 (ENSSTOG00000009819) #33	TOMM5 (ENSSTOG00000031862) #34	FRMPD1 (ENSSTOG00000009836) #35	TRMT10B (ENSSTOG00000024001) #36	EXOSC3 (ENSSTOG00000009859) #37
Arctic ground squirrel	MODERN SPECIES	19	RGP1 (ENSUPAG00010017697) #9	NPR2 (ENSUPAG00010017675) #11	ENSUPAG00010017666 #12	HINT2 (ENSUPAG00010017657) #13	FAM221B (ENSUPAG00010017647) #15	TMEM8B (ENSUPAG00010017633) #14	ENSUPAG00010017627	OR13J1 (ENSUPAG00010017625) #16	ENSUPAG00010017622	HRCT1 (ENSUPAG00010017619) #17	SPAAR (ENSUPAG00010017615) #18	ENSUPAG00010017611 ##20	ENSUPAG00010017609 ##20	ENSUPAG00010017603 #20	RECK (ENSUPAG00010017580) #21	GLIPR2 (ENSUPAG00010017575) #22	CCIN (ENSUPAG00010017573) #23	CLTA (ENSUPAG00010017440) #24	GNE (ENSUPAG00010017395) #25	RNF38 (ENSUPAG00010017340) #26	MELK (ENSUPAG00010017322) #27	ENSUPAG00010017319	PAX5 (ENSUPAG00010016838) #28	ZCCHC7 (ENSUPAG00010016816) #29	GRHPR (ENSUPAG00010016805) #30	ZBTB5 (ENSUPAG00010016792) #31	POLR1E (ENSUPAG00010016755) #32	FBXO10 (ENSUPAG00010016739) #33	TOMM5 (ENSUPAG00010016729) #34	FRMPD1 (ENSUPAG00010016707) #35	TRMT10B (ENSUPAG00010016693) #36
Alpin marmot	MODERN SPECIES	30	RGP1 (ENSMMMG00000006680) #9	NPR2 (ENSMMMG00000006654) #11	SPAG8 (ENSMMMG00000006625) #12	HINT2 (ENSMMMG00000006620) #13	FAM221B (ENSMMMG00000006612) #15	TMEM8B (ENSMMMG00000006563) #14	OR13J1 (ENSMMMG00000006552) #16	ENSMMMG00000006544	HRCT1 (ENSMMMG00000006538) #17	ENSMMMG00000006522 ##20	ENSMMMG00000006506 ##20	ENSMMMG00000006499 #20	ENSMMMG00000006479 ##20	RECK (ENSMMMG00000006434) #21	ENSMMMG00000006426	GLIPR2 (ENSMMMG00000006416) #22	CCIN (ENSMMMG00000006403) #23	CLTA (ENSMMMG00000006329) #24	GNE (ENSMMMG00000006274) #25	RNF38 (ENSMMMG00000006231) #26	MELK (ENSMMMG00000006206) #27	PAX5 (ENSMMMG00000005750) #28	ENSMMMG00000005736	ZCCHC7 (ENSMMMG00000005723) #29	GRHPR (ENSMMMG00000005712) #30	ZBTB5 (ENSMMMG00000005710) #31	POLR1E (ENSMMMG00000005675) #32	FBXO10 (ENSMMMG00000005655) #33	TOMM5 (ENSMMMG00000005643) #34	FRMPD1 (ENSMMMG00000005612) #35	TRMT10B (ENSMMMG00000005605) #36
Eurasian red squirrel	MODERN SPECIES	6	FAM221B (ENSSVLG00005024528) #15	TMEM8B (ENSSVLG00005024565) #14	ENSSVLG00005024620	ENSSVLG00005024639	ENSSVLG00005024658	OR13J1 (ENSSVLG00005024676) #16	HRCT1 (ENSSVLG00005024684) #17	SPAAR (ENSSVLG00005024697) #18	ENSSVLG00005024708 ##20	ENSSVLG00005024725 ##20	ENSSVLG00005024734 #20	ENSSVLG00005013722 ##20	ENSSVLG00005013774	RECK (ENSSVLG00005013970) #21	ENSSVLG00005014201	GLIPR2 (ENSSVLG00005014266) #22	CCIN (ENSSVLG00005014341) #23	CLTA (ENSSVLG00005014370) #24	ENSSVLG00005014548	GNE (ENSSVLG00005014623) #25	ENSSVLG00005014854	RNF38 (ENSSVLG00005014911) #26	MELK (ENSSVLG00005015313) #27	ENSSVLG00005016415	PAX5 (ENSSVLG00005016527) #28	ZCCHC7 (ENSSVLG00005017311) #29	GRHPR (ENSSVLG00005017339) #30	ZBTB5 (ENSSVLG00005017378) #31	POLR1E (ENSSVLG00005017394) #32	FBXO10 (ENSSVLG00005017431) #33	TOMM5 (ENSSVLG00005017466) #34
Hystricomorpha	ANCESTRAL SPECIES	7	ENSGT00940000160343 #7	ENSGT00390000010998 #8	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Naked mole-rat female	MODERN SPECIES	3	ACER2 (ENSHGLG00000042194)	ENSHGLG00000007103	SLC24A2 (ENSHGLG00000013244)	ENSHGLG00000035978	MLLT3 (ENSHGLG00000010560)	ENSHGLG00000039414	ENSHGLG00000042372	ENSHGLG00000017554	FOCAD (ENSHGLG00000010449)	PTPLAD2 (ENSHGLG00000015090)	ENSHGLG00000009375	ENSHGLG00000040693	ENSHGLG00000020519 #20	ENSHGLG00000020691 ##20	ENSHGLG00000006983 #21	ENSHGLG00000018870 #22	ENSHGLG00000006265	ENSHGLG00000019003	ENSHGLG00000005687 #24	ENSHGLG00000003036 #25	ENSHGLG00000007302	ENSHGLG00000044890	ENSHGLG00000006210	ENSHGLG00000037708	ENSHGLG00000004959	ENSHGLG00000011793	ENSHGLG00000005602	ENSHGLG00000000210	ENSHGLG00000035491	ENSHGLG00000041847	ENSHGLG00000006616
Hystricomorpha_a	ANCESTRAL SPECIES	5	ENSGT00940000160343 #7	ENSGT00390000010998 #8	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Guinea pig	MODERN SPECIES	27	GBA2 (ENSCPOG00000000410) #8	RGP1 (ENSCPOG00000000412) #9	MSMP (ENSCPOG00000030922) #10	NPR2 (ENSCPOG00000000414) #11	ENSCPOG00000034450 #12	HINT2 (ENSCPOG00000040327) #13	FAM221B (ENSCPOG00000022477) #15	TMEM8B (ENSCPOG00000024197) #14	ENSCPOG00000022117	OR13J1 (ENSCPOG00000006373) #16	ENSCPOG00000015207 ##20	ENSCPOG00000030507 ##20	ENSCPOG00000031231 #20	ENSCPOG00000020464 ##20	RECK (ENSCPOG00000006953) #21	GLIPR2 (ENSCPOG00000013329) #22	ENSCPOG00000035667 #23	ENSCPOG00000040417 #23	CLTA (ENSCPOG00000013495) #24	GNE (ENSCPOG00000003113) #25	RNF38 (ENSCPOG00000023073) #26	MELK (ENSCPOG00000014591) #27	PAX5 (ENSCPOG00000009987) #28	ZCCHC7 (ENSCPOG00000013472) #29	GRHPR (ENSCPOG00000012676) #30	POLR1E (ENSCPOG00000009965) #32	FBXO10 (ENSCPOG00000023734) #33	TOMM5 (ENSCPOG00000040729) #34	FRMPD1 (ENSCPOG00000008617) #35	TRMT10B (ENSCPOG00000008629) #36	EXOSC3 (ENSCPOG00000008634) #37
Hystricomorpha_b	ANCESTRAL SPECIES	11	ENSGT00940000160343 #7	ENSGT00390000010998 #8	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37	ENSGT00390000012666
Degu	DUPLICATION
Degu	MODERN SPECIES	86	MSMP (ENSODEG00000014843) #10	NPR2 (ENSODEG00000013759) #11	ENSODEG00000014871 #12	HINT2 (ENSODEG00000013829) #13	ENSODEG00000014805 #14	OR13J1 (ENSODEG00000020303) #16	ENSODEG00000020228 ##20	ENSODEG00000014986 ##20	ENSODEG00000020137	ENSODEG00000020163 ##20	ENSODEG00000020239 #20	ENSODEG00000020178 ##20	ENSODEG00000020150	ENSODEG00000014606	RECK (ENSODEG00000015090) #21	ENSODEG00000013847 #22	ENSODEG00000020318 #23	ENSODEG00000020206 #23	ENSODEG00000015178 #24	GNE (ENSODEG00000014784) #25	RNF38 (ENSODEG00000014850) #26	ENSODEG00000015450	MELK (ENSODEG00000015169) #27	PAX5 (ENSODEG00000014314) #28	ENSODEG00000014628 #30	ZBTB5 (ENSODEG00000013905) #31	POLR1E (ENSODEG00000014565) #32	FBXO10 (ENSODEG00000013432) #33	FRMPD1 (ENSODEG00000016482) #35	ENSODEG00000014904 #37	DCAF10 (ENSODEG00000015520)
Degu	MODERN SPECIES	296										ENSODEG00000000552	ENSODEG00000000567	ENSODEG00000000580	ENSODEG00000000592	ENSODEG00000018618	ENSODEG00000000602	ENSODEG00000018667 #22	ENSODEG00000001156	ENSODEG00000018765	ENSODEG00000001186	ENSODEG00000001196	ENSODEG00000001234	ENSODEG00000001248	ENSODEG00000001317	ENSODEG00000018656	ENSODEG00000001352	ENSODEG00000018550
Long-tailed chinchilla	MODERN SPECIES	179	CREB3 (ENSCLAG00000007023) #7	GBA2 (ENSCLAG00000006092) #8	RGP1 (ENSCLAG00000005768) #9	MSMP (ENSCLAG00000005738) #10	NPR2 (ENSCLAG00000002859) #11	SPAG8 (ENSCLAG00000002720) #12	ENSCLAG00000002682 #13	FAM221B (ENSCLAG00000002631) #15	TMEM8B (ENSCLAG00000002381) #14	ENSCLAG00000002334	OR13J1 (ENSCLAG00000017499) #16	ENSCLAG00000002148 ##20	ENSCLAG00000001840 #20	ENSCLAG00000001831 ##20	RECK (ENSCLAG00000001740) #21	GLIPR2 (ENSCLAG00000001571) #22	CLTA (ENSCLAG00000001549) #24	GNE (ENSCLAG00000001475) #25
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00950000183532	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000020276.rb #22
Common shrew	MODERN SPECIES	1648																ENSSARG00000006927 #22
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Suina	ANCESTRAL SPECIES	23	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Chacoan peccary	MODERN SPECIES	887	MSMP (ENSCWAG00000004164) #10	NPR2 (ENSCWAG00000004081) #11	SPAG8 (ENSCWAG00000004016) #12	HINT2 (ENSCWAG00000003988) #13	FAM221B (ENSCWAG00000003953) #15	TMEM8B (ENSCWAG00000003887) #14	ENSCWAG00000003872 #16	HRCT1 (ENSCWAG00000003864) #17	SPAAR (ENSCWAG00000003846) #18	OR2S2 (ENSCWAG00000003839) #19	ENSCWAG00000003829 ##20	ENSCWAG00000003787 #20	ENSCWAG00000019959 ##20	ENSCWAG00000019945 ##20	RECK (ENSCWAG00000019908) #21	GLIPR2 (ENSCWAG00000019879) #22	CCIN (ENSCWAG00000019866) #23	CLTA (ENSCWAG00000019777) #24	GNE (ENSCWAG00000019650) #25	RNF38 (ENSCWAG00000019537) #26	MELK (ENSCWAG00000019429) #27	PAX5 (ENSCWAG00000018007) #28	ENSCWAG00000017922	ZCCHC7 (ENSCWAG00000017893) #29	GRHPR (ENSCWAG00000017856) #30	ZBTB5 (ENSCWAG00000017845) #31	POLR1E (ENSCWAG00000017795) #32	FBXO10 (ENSCWAG00000017738) #33	TOMM5 (ENSCWAG00000017709) #34	FRMPD1 (ENSCWAG00000017603) #35	TRMT10B (ENSCWAG00000017486) #36
Pig	MODERN SPECIES		TMEM8B (ENSSSCG00000005325) #14	ENSSSCG00000005326	ENSSSCG00000052495 #16	ENSSSCG00000053440 #16	ENSSSCG00000052133 #16	ENSSSCG00000059200 #16	ENSSSCG00000054674 #16	HRCT1 (ENSSSCG00000055084) #17	SPAAR (ENSSSCG00000058329) #18	OR2S2 (ENSSSCG00000052192) #19	ENSSSCG00000048089 ##20	ENSSSCG00000059834 ##20	ENSSSCG00000050197 ##20	ENSSSCG00000034362 ##20	RECK (ENSSSCG00000005338) #21	GLIPR2 (ENSSSCG00000031236) #22	CCIN (ENSSSCG00000005340) #23	CLTA (ENSSSCG00000037131) #24	GNE (ENSSSCG00000037468) #25	RNF38 (ENSSSCG00000005343) #26	MELK (ENSSSCG00000005344) #27	PAX5 (ENSSSCG00000036086) #28	ZCCHC7 (ENSSSCG00000005346) #29	GRHPR (ENSSSCG00000005349) #30	ZBTB5 (ENSSSCG00000036340) #31	POLR1E (ENSSSCG00000005347) #32	FBXO10 (ENSSSCG00000005350) #33	ENSSSCG00000058091 #34	FRMPD1 (ENSSSCG00000005352) #35	TRMT10B (ENSSSCG00000005354) #36	EXOSC3 (ENSSSCG00000005355) #37
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905.bc #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905.bc #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905.bc #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT00850000133592 #18	ENSGT00510000049544 #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905.bc #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT00850000133592 #18	ENSGT00510000049544 #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00390000010998 #8	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905.bc #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT00510000049544 #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Narwhal	MODERN SPECIES	312	RGP1 (ENSMMNG00015012131) #9	MSMP (ENSMMNG00015012146) #10	NPR2 (ENSMMNG00015012171) #11	SPAG8 (ENSMMNG00015012211) #12	ENSMMNG00015012242 #13	FAM221B (ENSMMNG00015012262) #15	TMEM8B (ENSMMNG00015012291) #14	ENSMMNG00015012329	HRCT1 (ENSMMNG00015012373) #17	OR2S2 (ENSMMNG00015012394) #19	ENSMMNG00015012407 ##20	ENSMMNG00015012421 ##20	ENSMMNG00015012445 ##20	ENSMMNG00015012462 ##20	RECK (ENSMMNG00015012481) #21	GLIPR2 (ENSMMNG00015012526) #22	CCIN (ENSMMNG00015012539) #23	CLTA (ENSMMNG00015012569) #24	GNE (ENSMMNG00015012624) #25	RNF38 (ENSMMNG00015012702) #26	MELK (ENSMMNG00015012930) #27	PAX5 (ENSMMNG00015013285) #28	ZCCHC7 (ENSMMNG00015013355) #29	GRHPR (ENSMMNG00015013371) #30	ZBTB5 (ENSMMNG00015013395) #31	POLR1E (ENSMMNG00015013412) #32	FBXO10 (ENSMMNG00015013429) #33	ENSMMNG00015013449	FRMPD1 (ENSMMNG00015013472) #35	TRMT10B (ENSMMNG00015013498) #36	EXOSC3 (ENSMMNG00015013539) #37
Beluga whale	MODERN SPECIES	50	GBA2 (ENSDLEG00000016358) #8	RGP1 (ENSDLEG00000016325) #9	MSMP (ENSDLEG00000016314) #10	NPR2 (ENSDLEG00000015834) #11	SPAG8 (ENSDLEG00000015747) #12	ENSDLEG00000015739 #13	FAM221B (ENSDLEG00000015719) #15	TMEM8B (ENSDLEG00000015676) #14	ENSDLEG00000015663	HRCT1 (ENSDLEG00000015659) #17	OR2S2 (ENSDLEG00000015502) #19	ENSDLEG00000015467 ##20	ENSDLEG00000015451 ##20	ENSDLEG00000015442 ##20	RECK (ENSDLEG00000015388) #21	GLIPR2 (ENSDLEG00000015374) #22	CCIN (ENSDLEG00000015368) #23	CLTA (ENSDLEG00000015350) #24	GNE (ENSDLEG00000015329) #25	RNF38 (ENSDLEG00000015280) #26	MELK (ENSDLEG00000015215) #27	PAX5 (ENSDLEG00000015164) #28	ZCCHC7 (ENSDLEG00000015140) #29	GRHPR (ENSDLEG00000015120) #30	ZBTB5 (ENSDLEG00000015116) #31	POLR1E (ENSDLEG00000015017) #32	FBXO10 (ENSDLEG00000014962) #33	TOMM5 (ENSDLEG00000014955) #34	FRMPD1 (ENSDLEG00000014920) #35	TRMT10B (ENSDLEG00000014896) #36	EXOSC3 (ENSDLEG00000014885) #37
Vaquita	MODERN SPECIES	17	GBA2 (ENSPSNG00000015786) #8	MSMP (ENSPSNG00000015695) #10	RGP1 (ENSPSNG00000015648) #9	NPR2 (ENSPSNG00000015505) #11	SPAG8 (ENSPSNG00000015288) #12	HINT2 (ENSPSNG00000015227) #13	FAM221B (ENSPSNG00000015115) #15	TMEM8B (ENSPSNG00000015041) #14	ENSPSNG00000014933	SPAAR (ENSPSNG00000014832) #18	OR2S2 (ENSPSNG00000013964) #19	ENSPSNG00000013731 ##20	ENSPSNG00000013593 ##20	ENSPSNG00000013432 ##20	RECK (ENSPSNG00000013364) #21	GLIPR2 (ENSPSNG00000013245) #22	CCIN (ENSPSNG00000013202) #23	CLTA (ENSPSNG00000012962) #24	GNE (ENSPSNG00000012556) #25	RNF38 (ENSPSNG00000012247) #26	MELK (ENSPSNG00000011285) #27	PAX5 (ENSPSNG00000010179) #28	ZCCHC7 (ENSPSNG00000009846) #29	GRHPR (ENSPSNG00000009794) #30	ZBTB5 (ENSPSNG00000009756) #31	POLR1E (ENSPSNG00000013074) #32	FBXO10 (ENSPSNG00000012998) #33	ENSPSNG00000012857	FRMPD1 (ENSPSNG00000012674) #35	TRMT10B (ENSPSNG00000012547) #36	EXOSC3 (ENSPSNG00000012477) #37
Dolphin	MODERN SPECIES	108															RECK (ENSTTRG00000016280) #21	GLIPR2 (ENSTTRG00000016281) #22	CCIN (ENSTTRG00000016282) #23	CLTA (ENSTTRG00000016283) #24	GNE (ENSTTRG00000016284) #25
Sperm whale	MODERN SPECIES	20	FAM166B (ENSPCTG00005019827)	TPM2 (ENSPCTG00005019723)	CA9 (ENSPCTG00005019627)	MSMP (ENSPCTG00005019598) #10	NPR2 (ENSPCTG00005019560) #11	SPAG8 (ENSPCTG00005019536) #12	HINT2 (ENSPCTG00005019416) #15	TMEM8B (ENSPCTG00005019260) #14	HRCT1 (ENSPCTG00005019189) #17	SPAAR (ENSPCTG00005019176) #18	OR2S2 (ENSPCTG00005019158) #19	ENSPCTG00005019109 ##20	ENSPCTG00005019071 ##20	ENSPCTG00005019055 ##20	RECK (ENSPCTG00005018930) #21	GLIPR2 (ENSPCTG00005018788) #22	CCIN (ENSPCTG00005018766) #23	CLTA (ENSPCTG00005018607) #24	GNE (ENSPCTG00005018390) #25	RNF38 (ENSPCTG00005018119) #26	MELK (ENSPCTG00005017303) #27	PAX5 (ENSPCTG00005016176) #28	ZCCHC7 (ENSPCTG00005016068) #29	GRHPR (ENSPCTG00005015985) #30	ZBTB5 (ENSPCTG00005015963) #31	POLR1E (ENSPCTG00005015900) #32	FBXO10 (ENSPCTG00005015855) #33	TOMM5 (ENSPCTG00005015691)	FRMPD1 (ENSPCTG00005015479) #35	TRMT10B (ENSPCTG00005015252) #36	EXOSC3 (ENSPCTG00005015181) #37
Blue whale	MODERN SPECIES	17	NPR2 (ENSBMSG00010005036) #11	SPAG8 (ENSBMSG00010005225) #12	FAM221B (ENSBMSG00010005251) #15	TMEM8B (ENSBMSG00010005268) #14	ENSBMSG00010005286	OR13J1 (ENSBMSG00010005296) #16	HRCT1 (ENSBMSG00010005300) #17	SPAAR (ENSBMSG00010005307) #18	OR2S2 (ENSBMSG00010005316) #19	ENSBMSG00010005326 ##20	ENSBMSG00010005334 ##20	ENSBMSG00010005338 ##20	ENSBMSG00010005344 ##20	RECK (ENSBMSG00010005357) #21	ENSBMSG00010005375	GLIPR2 (ENSBMSG00010005395) #22	CCIN (ENSBMSG00010005410) #23	CLTA (ENSBMSG00010005427) #24	GNE (ENSBMSG00010005454) #25	RNF38 (ENSBMSG00010005476) #26	ENSBMSG00010005497	MELK (ENSBMSG00010005509) #27	PAX5 (ENSBMSG00010005620) #28	ENSBMSG00010005925 #29	GRHPR (ENSBMSG00010005932) #30	ZBTB5 (ENSBMSG00010005946) #31	POLR1E (ENSBMSG00010005957) #32	FBXO10 (ENSBMSG00010005972) #33	ENSBMSG00010005983	FRMPD1 (ENSBMSG00010005999) #35	TRMT10B (ENSBMSG00010006029) #36
Pecora	ANCESTRAL SPECIES	30	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.f #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.e #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00940000168934.a	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Yarkand deer	MODERN SPECIES	21	MSMP (ENSCHYG00000020407) #10	NPR2 (ENSCHYG00000020493) #11	SPAG8 (ENSCHYG00000020945) #12	HINT2 (ENSCHYG00000021062) #13	FAM221B (ENSCHYG00000021157) #15	TMEM8B (ENSCHYG00000021241) #14	HRCT1 (ENSCHYG00000021366) #17	OR2S2 (ENSCHYG00000021412) #19	ENSCHYG00000021426 ##20	ENSCHYG00000021448 ##20	ENSCHYG00000021475 #20	ENSCHYG00000021490 #20	ENSCHYG00000021509 ##20	RECK (ENSCHYG00000021588) #21	ENSCHYG00000021708	GLIPR2 (ENSCHYG00000021755) #22	CCIN (ENSCHYG00000021908) #23	ENSCHYG00000021966 #24	GNE (ENSCHYG00000022306) #25	RNF38 (ENSCHYG00000022517) #26	MELK (ENSCHYG00000022868) #27	PAX5 (ENSCHYG00000024069) #28	ZCCHC7 (ENSCHYG00000024304) #29	GRHPR (ENSCHYG00000024341) #30	ZBTB5 (ENSCHYG00000024398) #31	POLR1E (ENSCHYG00000024422) #32	FBXO10 (ENSCHYG00000024464) #33	TOMM5 (ENSCHYG00000024503) #34	FRMPD1 (ENSCHYG00000024525) #35	ENSCHYG00000024568	TRMT10B (ENSCHYG00000024597) #36
Percora_a	ANCESTRAL SPECIES	24	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.f #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.e #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00940000168934.a	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Siberian musk deer	MODERN SPECIES	29	GBA2 (ENSMMSG00000015315) #8	RGP1 (ENSMMSG00000015277) #9	MSMP (ENSMMSG00000015255) #10	NPR2 (ENSMMSG00000015203) #11	ENSMMSG00000015165 #12	HINT2 (ENSMMSG00000015132) #13	FAM221B (ENSMMSG00000015107) #15	TMEM8B (ENSMMSG00000015059) #14	OR13J1 (ENSMMSG00000015046) #16	HRCT1 (ENSMMSG00000015040) #17	OR2S2 (ENSMMSG00000015024) #19	ENSMMSG00000015017 ##20	ENSMMSG00000015011 #20	ENSMMSG00000015002 #20	RECK (ENSMMSG00000014891) #21	GLIPR2 (ENSMMSG00000014809) #22	CCIN (ENSMMSG00000014796) #23	CLTA (ENSMMSG00000014695) #24	GNE (ENSMMSG00000014573) #25	RNF38 (ENSMMSG00000014493) #26	MELK (ENSMMSG00000012245) #27	PAX5 (ENSMMSG00000009627) #28	ZCCHC7 (ENSMMSG00000009453) #29	GRHPR (ENSMMSG00000009409) #30	ZBTB5 (ENSMMSG00000009392) #31	POLR1E (ENSMMSG00000009342) #32	FBXO10 (ENSMMSG00000009254) #33	ENSMMSG00000009225 #34	FRMPD1 (ENSMMSG00000009150) #35	TRMT10B (ENSMMSG00000009063) #36	EXOSC3 (ENSMMSG00000009013) #37
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000164268.e.b	ENSGT00940000164268.f	ENSGT01040000240406.A.a.c #16	ENSGT00940000164268.e.a	ENSGT01040000240406.A.a.d #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.f #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.e #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00940000168934.a	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES	14	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268.e.b	ENSGT00940000164268.f	ENSGT00940000164268.e.a	ENSGT01040000240406.A.a.c #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.f #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.e #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb.c #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020004919 #12	HINT2 (ENSOARG00020004883) #13	TMEM8B (ENSOARG00020004828) #14	ENSOARG00020004811	ENSOARG00020004804	ENSOARG00020004793	OR13J1 (ENSOARG00020004778) #16	HRCT1 (ENSOARG00020004765) #17	OR2S2 (ENSOARG00020004736) #19	ENSOARG00020004712 ##20	ENSOARG00020004701 #20	ENSOARG00020004689 #20	ENSOARG00020004661 ##20	RECK (ENSOARG00020004461) #21	ENSOARG00020004439	GLIPR2 (ENSOARG00020004393) #22	CCIN (ENSOARG00020004382) #23	CLTA (ENSOARG00020004179) #24	GNE (ENSOARG00020003972) #25	RNF38 (ENSOARG00020003904) #26	MELK (ENSOARG00020003109) #27	PAX5 (ENSOARG00020002388) #28	ZCCHC7 (ENSOARG00020002296) #29	GRHPR (ENSOARG00020002285) #30	ZBTB5 (ENSOARG00020002278) #31	POLR1E (ENSOARG00020002256) #32	FBXO10 (ENSOARG00020002224) #33	TOMM5 (ENSOARG00020002208) #34	FRMPD1 (ENSOARG00020002157) #35	TRMT10B (ENSOARG00020002128) #36	EXOSC3 (ENSOARG00020002104) #37
Goat	MODERN SPECIES	27	ENSCHIG00000007164 #12	HINT2 (ENSCHIG00000010130) #13	FAM221B (ENSCHIG00000025372) #15	ENSCHIG00000013918 #14	ENSCHIG00000013865	OR13J1 (ENSCHIG00000012438) #16	SPAAR (ENSCHIG00000023998) #18	OR2S2 (ENSCHIG00000005494) #19	ENSCHIG00000002364 ##20	ENSCHIG00000003740 ##20	ENSCHIG00000003393 #20	ENSCHIG00000004462 #20	ENSCHIG00000005865 ##20	RECK (ENSCHIG00000022195) #21	ENSCHIG00000015586	ENSCHIG00000022145 #22	CCIN (ENSCHIG00000009927) #23	ENSCHIG00000016030 #24	GNE (ENSCHIG00000026618) #25	RNF38 (ENSCHIG00000016221) #26	MELK (ENSCHIG00000026166) #27	PAX5 (ENSCHIG00000018135) #28	ZCCHC7 (ENSCHIG00000009716) #29	GRHPR (ENSCHIG00000019637) #30	ZBTB5 (ENSCHIG00000008725) #31	POLR1E (ENSCHIG00000019479) #32	FBXO10 (ENSCHIG00000009362) #33	TOMM5 (ENSCHIG00000022492) #34	FRMPD1 (ENSCHIG00000014095) #35	TRMT10B (ENSCHIG00000025861) #36	EXOSC3 (ENSCHIG00000018466) #37
Caprinae	ANCESTRAL SPECIES																	ENSGT00390000020276.rb.d #22
Goat	MODERN SPECIES	27	NUGGC (ENSCHIG00000016874)	SCARA5 (ENSCHIG00000002743)	ENSCHIG00000003841	ENSCHIG00000008066	ENSCHIG00000021742	ESCO2 (ENSCHIG00000012950)	CCDC25 (ENSCHIG00000005126)	SCARA3 (ENSCHIG00000025164)	ENSCHIG00000010216	TMEM215 (ENSCHIG00000008408)	NDUFB6 (ENSCHIG00000027260)	TOPORS (ENSCHIG00000012805)	RIGI (ENSCHIG00000025883)	ACO1 (ENSCHIG00000007667)	ENSCHIG00000020484	ENSCHIG00000024316 #22	ENSCHIG00000006618	LINGO2 (ENSCHIG00000013346)	C9orf72 (ENSCHIG00000014755)	MOB3B (ENSCHIG00000011582)	IFNK (ENSCHIG00000016395)	EQTN (ENSCHIG00000008768)	TEK (ENSCHIG00000013962)	IFT74 (ENSCHIG00000009508)	LRRC19 (ENSCHIG00000024759)	PLAA (ENSCHIG00000014920)	CAAP1 (ENSCHIG00000017091)	ENSCHIG00000026276	TUSC1 (ENSCHIG00000012670)	ENSCHIG00000003269	IZUMO3 (ENSCHIG00000018315)
Bovinae	ANCESTRAL SPECIES	14	ENSGT01040000240406.A.a.c.b.a #16	ENSGT00940000164268.f	ENSGT00940000164268.e.a.a.b	ENSGT01040000240406.A.a.c.b.b.b #16	ENSGT01040000240406.A.a.c.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.f #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.e #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.c ##20	ENSGT00390000018540 #21	ENSGT00940000168934.a	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
American bison	MODERN SPECIES	3147	ENSBBBG00000017016 #16	ENSBBBG00000017023 #16	ENSBBBG00000017026	ENSBBBG00000017033 #16	ENSBBBG00000017040 #16	HRCT1 (ENSBBBG00000017048) #17	SPAAR (ENSBBBG00000017054) #18	OR2S2 (ENSBBBG00000017059) #19	ENSBBBG00000017071 ##20	ENSBBBG00000004219 ##20	ENSBBBG00000017081 #20	ENSBBBG00000004222 #20	ENSBBBG00000004223 ##20	ENSBBBG00000007458	RECK (ENSBBBG00000017140) #21	GLIPR2 (ENSBBBG00000004250) #22	CCIN (ENSBBBG00000007148) #23	CLTA (ENSBBBG00000006775) #24	GNE (ENSBBBG00000004320) #25	RNF38 (ENSBBBG00000017633) #26	MELK (ENSBBBG00000018036) #27
Bos	ANCESTRAL SPECIES	10	ENSGT00940000164268.e.b	ENSGT01040000240406.A.a.c.b.a #16	ENSGT00940000164268.f	ENSGT00940000164268.e.a.a.b	ENSGT01040000240406.A.a.c.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.f #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.e #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.c ##20	ENSGT00390000018540 #21	ENSGT00940000168934.a	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228.h #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Bos_b	ANCESTRAL SPECIES	3	ENSGT01040000240406.A.a.c.a.d #16	ENSGT01040000240406.A.a.c.b.a.d #16	ENSGT01040000240406.A.a.d.b #16	ENSGT00940000164268.e.a.a.a	ENSGT01040000240406.A.a.d.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.f #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.e #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.c ##20	ENSGT00390000018540 #21	ENSGT00940000168934.a	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00970000197646	ENSGT00940000156228.h #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005008975 #16	ENSBIXG00005006087 #16	ENSBIXG00005008959 #16	ENSBIXG00005000342 #16	ENSBIXG00005006306 #16	ENSBIXG00005006406 #16	HRCT1 (ENSBIXG00005008938) #17	OR2S2 (ENSBIXG00005008926) #19	ENSBIXG00005008916 ##20	ENSBIXG00005008905 ##20	ENSBIXG00005008896 #20	ENSBIXG00005008883 #20	ENSBIXG00005008871 ##20	RECK (ENSBIXG00005008835) #21	ENSBIXG00005008807	GLIPR2 (ENSBIXG00005008789) #22	CCIN (ENSBIXG00005008758) #23	ENSBIXG00005008754	CLTA (ENSBIXG00005008733) #24	GNE (ENSBIXG00005008674) #25	ENSBIXG00005008636	ENSBIXG00005008604 #26	MELK (ENSBIXG00005008390) #27	PAX5 (ENSBIXG00005000142) #28	ZCCHC7 (ENSBIXG00005008231) #29	GRHPR (ENSBIXG00005008209) #30	ZBTB5 (ENSBIXG00005008186) #31	POLR1E (ENSBIXG00005008157) #32	FBXO10 (ENSBIXG00005008132) #33	FRMPD1 (ENSBIXG00005008102) #35	TRMT10B (ENSBIXG00005000105) #36
Cow	MODERN SPECIES	27	OR13J1D (ENSBTAG00000054526) #16	OR13J1G (ENSBTAG00000049192) #16	OR13E12 (ENSBTAG00000052875)	OR13J1B (ENSBTAG00000054837) #16	HRCT1 (ENSBTAG00000055183) #17	SPAAR (ENSBTAG00000050436) #18	OR13C11 (ENSBTAG00000049084) #19	OR13C7 (ENSBTAG00000052921) ##20	OR13C7L (ENSBTAG00000054503) ##20	OR13C7B (ENSBTAG00000051473) #20	OR13C7C (ENSBTAG00000048381) #20	OR13C7J (ENSBTAG00000049595) ##20	RECK (ENSBTAG00000000076) #21	ENSBTAG00000049739	ENSBTAG00000054769	GLIPR2 (ENSBTAG00000000078) #22	CCIN (ENSBTAG00000021696) #23	CLTA (ENSBTAG00000001137) #24	GNE (ENSBTAG00000001142) #25	ENSBTAG00000050221	RNF38 (ENSBTAG00000005519) #26	MELK (ENSBTAG00000021686) #27	PAX5 (ENSBTAG00000012498) #28	ZCCHC7 (ENSBTAG00000025859) #29	GRHPR (ENSBTAG00000019299) #30	ZBTB5 (ENSBTAG00000007761) #31	POLR1E (ENSBTAG00000012243) #32	FBXO10 (ENSBTAG00000012262) #33	TOMM5 (ENSBTAG00000032777) #34	FRMPD1 (ENSBTAG00000046574) #35	TRMT10B (ENSBTAG00000018922) #36
Bos_a	ANCESTRAL SPECIES	30	ENSGT00940000157861 #14	ENSGT00940000164268.e.b	ENSGT00940000164268.f	ENSGT01040000240406.A.a.c.b.a #16	ENSGT00940000164268.e.a.a.b	ENSGT01040000240406.A.a.c.a #16	ENSGT00510000049544 #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.e #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a.f #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b.c ##20	ENSGT00390000018540 #21	ENSGT00940000168934.a	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228.h.a #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Domestic yak	MODERN SPECIES	26	ENSBGRG00000003508	ENSBGRG00000003500 #16	ENSBGRG00000003488	ENSBGRG00000003484 #16	ENSBGRG00000003478 #16	ENSBGRG00000003469 #16	ENSBGRG00000003464 #16	HRCT1 (ENSBGRG00000003456) #17	OR2S2 (ENSBGRG00000003440) #19	ENSBGRG00000003434 ##20	ENSBGRG00000003428 ##20	ENSBGRG00000003425 #20	ENSBGRG00000003399	ENSBGRG00000003395	RECK (ENSBGRG00000003292) #21	GLIPR2 (ENSBGRG00000003251) #22	CCIN (ENSBGRG00000003242) #23	CLTA (ENSBGRG00000003148) #24	GNE (ENSBGRG00000003060) #25	ENSBGRG00000002964 #26	MELK (ENSBGRG00000002583) #27	PAX5 (ENSBGRG00000002053) #28	ZCCHC7 (ENSBGRG00000001955) #29	GRHPR (ENSBGRG00000001921) #30	ZBTB5 (ENSBGRG00000001906) #31	POLR1E (ENSBGRG00000001858) #32	FBXO10 (ENSBGRG00000001797) #33	TOMM5 (ENSBGRG00000001778) #34	FRMPD1 (ENSBGRG00000001734) #35	TRMT10B (ENSBGRG00000001690) #36	EXOSC3 (ENSBGRG00000001654) #37
Wild yak	MODERN SPECIES	2271														ENSBMUG00000025179 #21	ENSBMUG00000025183	GLIPR2 (ENSBMUG00000025200) #22	CCIN (ENSBMUG00000025203) #23	CLTA (ENSBMUG00000025213) #24	GNE (ENSBMUG00000025239) #25	RNF38 (ENSBMUG00000025284) #26	MELK (ENSBMUG00000025380) #27
Camelidae	ANCESTRAL SPECIES	5	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Arabian camel	MODERN SPECIES	30	MSMP (ENSCDRG00005004661) #10	NPR2 (ENSCDRG00005004561) #11	SPAG8 (ENSCDRG00005004521) #12	HINT2 (ENSCDRG00005004491) #13	FAM221B (ENSCDRG00005004476) #15	ENSCDRG00005004453 #14	ENSCDRG00005004440	OR13J1 (ENSCDRG00005004431) #16	HRCT1 (ENSCDRG00005004424) #17	SPAAR (ENSCDRG00005004412) #18	ENSCDRG00005004403 ##20	ENSCDRG00005004396 ##20	ENSCDRG00005004374 ##20	ENSCDRG00005004361 ##20	RECK (ENSCDRG00005004224) #21	GLIPR2 (ENSCDRG00005004161) #22	CCIN (ENSCDRG00005004132) #23	CLTA (ENSCDRG00005003973) #24	GNE (ENSCDRG00005003773) #25	RNF38 (ENSCDRG00005003556) #26	MELK (ENSCDRG00005002575) #27	PAX5 (ENSCDRG00005001265) #28	ZCCHC7 (ENSCDRG00005001140) #29	GRHPR (ENSCDRG00005001114) #30	ZBTB5 (ENSCDRG00005001091) #31	POLR1E (ENSCDRG00005001077) #32	FBXO10 (ENSCDRG00005001052) #33	FRMPD1 (ENSCDRG00005001028) #35	TRMT10B (ENSCDRG00005000993) #36	EXOSC3 (ENSCDRG00005000958) #37	DCAF10 (ENSCDRG00005000928)
Alpaca	MODERN SPECIES	150															RECK (ENSVPAG00000006648) #21	GLIPR2 (ENSVPAG00000006649) #22	CLTA (ENSVPAG00000006652) #24	GNE (ENSVPAG00000006654) #25	RNF38 (ENSVPAG00000006655) #26
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Carnivora	ANCESTRAL SPECIES	18	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Felidae	ANCESTRAL SPECIES	16	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.e ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Panthera	ANCESTRAL SPECIES	11	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.e ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Panthera_a	ANCESTRAL SPECIES	10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.e ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
leopard	MODERN SPECIES	26	RGP1 (ENSPPRG00000016050) #9	MSMP (ENSPPRG00000016290) #10	NPR2 (ENSPPRG00000017087) #11	SPAG8 (ENSPPRG00000020212) #12	HINT2 (ENSPPRG00000020701) #13	ENSPPRG00000023023 #14	OR13J1 (ENSPPRG00000018745) #16	HRCT1 (ENSPPRG00000018760) #17	SPAAR (ENSPPRG00000018784) #18	ENSPPRG00000018796 #19	ENSPPRG00000018811 #19	ENSPPRG00000018831 ##20	ENSPPRG00000001592 ##20	ENSPPRG00000018854 ##20	RECK (ENSPPRG00000002281) #21	GLIPR2 (ENSPPRG00000003068) #22	CCIN (ENSPPRG00000018947) #23	CLTA (ENSPPRG00000004210) #24	GNE (ENSPPRG00000006696) #25	RNF38 (ENSPPRG00000008791) #26	MELK (ENSPPRG00000015200) #27	PAX5 (ENSPPRG00000001714) #28	ENSPPRG00000003834	ENSPPRG00000004840 #29	GRHPR (ENSPPRG00000005083) #30	ZBTB5 (ENSPPRG00000019658) #31	POLR1E (ENSPPRG00000005649) #32	FBXO10 (ENSPPRG00000005833) #33	TOMM5 (ENSPPRG00000006121) #34	FRMPD1 (ENSPPRG00000006735) #35	TRMT10B (ENSPPRG00000008324) #36
lion	MODERN SPECIES	13	NPR2 (ENSPLOG00000013537) #11	SPAG8 (ENSPLOG00000013403) #12	HINT2 (ENSPLOG00000013337) #13	FAM221B (ENSPLOG00000013273) #15	TMEM8B (ENSPLOG00000013146) #14	OR13J1 (ENSPLOG00000013126) #16	HRCT1 (ENSPLOG00000013106) #17	SPAAR (ENSPLOG00000013091) #18	OR2S2 (ENSPLOG00000013067) #19	ENSPLOG00000013053 ##20	ENSPLOG00000013031 ##20	ENSPLOG00000013009 ##20	ENSPLOG00000012989 #20	ENSPLOG00000012966 ##20	RECK (ENSPLOG00000012782) #21	GLIPR2 (ENSPLOG00000012655) #22	CCIN (ENSPLOG00000012627) #23	CLTA (ENSPLOG00000012334) #24	GNE (ENSPLOG00000012076) #25	RNF38 (ENSPLOG00000011838) #26	ENSPLOG00000011802	MELK (ENSPLOG00000011425) #27	PAX5 (ENSPLOG00000010674) #28	ZCCHC7 (ENSPLOG00000010497) #29	GRHPR (ENSPLOG00000010464) #30	ZBTB5 (ENSPLOG00000010452) #31	POLR1E (ENSPLOG00000010379) #32	FBXO10 (ENSPLOG00000010250) #33	TOMM5 (ENSPLOG00000010222) #34	FRMPD1 (ENSPLOG00000010141) #35	ENSPLOG00000010065 #36
Tiger	MODERN SPECIES	82	RGP1 (ENSPTIG00000016837) #9	NPR2 (ENSPTIG00000016358) #11	SPAG8 (ENSPTIG00000015579) #12	HINT2 (ENSPTIG00000015400) #13	ENSPTIG00000014690 #14	OR13J1 (ENSPTIG00000003599) #16	HRCT1 (ENSPTIG00000003573) #17	SPAAR (ENSPTIG00000003564) #18	OR2S2 (ENSPTIG00000003547) #19	ENSPTIG00000003518 ##20	ENSPTIG00000003494 ##20	ENSPTIG00000003451 ##20	ENSPTIG00000003427 #20	ENSPTIG00000003414 ##20	RECK (ENSPTIG00000011646) #21	GLIPR2 (ENSPTIG00000011112) #22	CCIN (ENSPTIG00000003176) #23	CLTA (ENSPTIG00000010744) #24	GNE (ENSPTIG00000007096) #25	RNF38 (ENSPTIG00000021395) #26
Cat	MODERN SPECIES	244	MSMP (ENSFCAG00000018424) #10	NPR2 (ENSFCAG00000012753) #11	SPAG8 (ENSFCAG00000012754) #12	HINT2 (ENSFCAG00000012755) #13	FAM221B (ENSFCAG00000026483) #15	TMEM8B (ENSFCAG00000012756) #14	ENSFCAG00000030010	OR13J1 (ENSFCAG00000012759) #16	OR2S2 (ENSFCAG00000042942) #19	ENSFCAG00000042129 ##20	ENSFCAG00000044567 ##20	ENSFCAG00000046648 ##20	ENSFCAG00000022850 #20	ENSFCAG00000031644 ##20	RECK (ENSFCAG00000012761) #21	GLIPR2 (ENSFCAG00000012762) #22	CCIN (ENSFCAG00000012763) #23	CLTA (ENSFCAG00000012764) #24	GNE (ENSFCAG00000012765) #25	RNF38 (ENSFCAG00000023701) #26	MELK (ENSFCAG00000033469) #27	ENSFCAG00000048364	ENSFCAG00000031723	PAX5 (ENSFCAG00000001628) #28	ZCCHC7 (ENSFCAG00000029100) #29	GRHPR (ENSFCAG00000013079) #30	ZBTB5 (ENSFCAG00000013080) #31	POLR1E (ENSFCAG00000013081) #32	FBXO10 (ENSFCAG00000013082) #33	TOMM5 (ENSFCAG00000038791) #34	FRMPD1 (ENSFCAG00000011920) #35
Caniformia	ANCESTRAL SPECIES	16	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.c #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.d #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00950000185238	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Canidae	ANCESTRAL SPECIES	9	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00950000185113	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.d #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00950000185238	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Red fox	MODERN SPECIES	96	ENSVVUG00000020198	HINT2 (ENSVVUG00000020192) #13	FAM221B (ENSVVUG00000020178) #15	ENSVVUG00000020172 #14	OR13J1 (ENSVVUG00000020171) #16	HRCT1 (ENSVVUG00000020164) #17	ENSVVUG00000020159	ENSVVUG00000020157 #19	ENSVVUG00000020154 #19	ENSVVUG00000020149 ##20	ENSVVUG00000020144 ##20	ENSVVUG00000020143 ##20	ENSVVUG00000020134 ##20	ENSVVUG00000020129	RECK (ENSVVUG00000020108) #21	GLIPR2 (ENSVVUG00000020102) #22	CCIN (ENSVVUG00000020100) #23	CLTA (ENSVVUG00000020075) #24	GNE (ENSVVUG00000020053) #25	RNF38 (ENSVVUG00000020042) #26	MELK (ENSVVUG00000020007) #27	ENSVVUG00000019999	PAX5 (ENSVVUG00000019988) #28	ZCCHC7 (ENSVVUG00000019974) #29	GRHPR (ENSVVUG00000019969) #30	ZBTB5 (ENSVVUG00000019963) #31	POLR1E (ENSVVUG00000019954) #32	FBXO10 (ENSVVUG00000019922) #33	TOMM5 (ENSVVUG00000019916) #34	FRMPD1 (ENSVVUG00000019894) #35	TRMT10B (ENSVVUG00000019886) #36
Canis_lupus	ANCESTRAL SPECIES	15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00950000185113	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.d.e #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.d.f.a #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.d.f.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00950000185238	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Dingo	MODERN SPECIES	366	TMEM8B (ENSCAFG00020017499) #14	OR13J1 (ENSCAFG00020017500) #16	HRCT1 (ENSCAFG00020017502) #17	ENSCAFG00020017503	ENSCAFG00020017505 #19	ENSCAFG00020017506 #19	ENSCAFG00020017507 #19	ENSCAFG00020017508 #19	ENSCAFG00020017509 ##20	ENSCAFG00020017510 ##20	ENSCAFG00020017511 ##20	ENSCAFG00020017514 #20	ENSCAFG00020017517 ##20	RECK (ENSCAFG00020017546) #21	ENSCAFG00020017740	GLIPR2 (ENSCAFG00020017744) #22	CCIN (ENSCAFG00020017745) #23	ENSCAFG00020017746 #24	GNE (ENSCAFG00020017749) #25	ENSCAFG00020017750	RNF38 (ENSCAFG00020017752) #26	MELK (ENSCAFG00020017769) #27	ENSCAFG00020017803	PAX5 (ENSCAFG00020017820) #28	ENSCAFG00020017838	GRHPR (ENSCAFG00020017844) #30	ZBTB5 (ENSCAFG00020017850) #31	POLR1E (ENSCAFG00020017851) #32	FBXO10 (ENSCAFG00020017856) #33	TOMM5 (ENSCAFG00020017874) #34	FRMPD1 (ENSCAFG00020017887) #35
Caniformia_b	ANCESTRAL SPECIES	12	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.c #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.d #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00950000185238	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Mustelinae	ANCESTRAL SPECIES	22	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.c.a #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.d.c.a.a #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.d.c.a.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37	ENSGT00390000012666
Ferret	MODERN SPECIES	182	FAM221B (ENSMPUG00000005640) #15	TMEM8B (ENSMPUG00000005654) #14	ENSMPUG00000018504	OR13J1 (ENSMPUG00000018506) #16	ENSMPUG00000018508 #19	ENSMPUG00000018511 #19	ENSMPUG00000018513 #19	ENSMPUG00000018515 #19	ENSMPUG00000018517 #19	ENSMPUG00000018520 #19	ENSMPUG00000018521 #19	ENSMPUG00000018524 ##20	ENSMPUG00000018527 #20	ENSMPUG00000005710 ##20	RECK (ENSMPUG00000005718) #21	GLIPR2 (ENSMPUG00000005823) #22	CCIN (ENSMPUG00000018531) #23	CLTA (ENSMPUG00000005853) #24	GNE (ENSMPUG00000005863) #25	RNF38 (ENSMPUG00000005983) #26	ENSMPUG00000005994 #27	ENSMPUG00000006004 #27	PAX5 (ENSMPUG00000006012) #28	ZCCHC7 (ENSMPUG00000006023) #29	GRHPR (ENSMPUG00000006029) #30	ZBTB5 (ENSMPUG00000018533) #31	POLR1E (ENSMPUG00000006040) #32	FBXO10 (ENSMPUG00000006111) #33	FRMPD1 (ENSMPUG00000006120) #35	TRMT10B (ENSMPUG00000006133) #36	EXOSC3 (ENSMPUG00000006144) #37
American mink	MODERN SPECIES	62											ENSNVIG00000016739 #19	ENSNVIG00000016725 ##20	ENSNVIG00000016707 ##20	ENSNVIG00000016695 ##20	RECK (ENSNVIG00000016655) #21	GLIPR2 (ENSNVIG00000016605) #22	CCIN (ENSNVIG00000016601) #23	CLTA (ENSNVIG00000016519) #24	ENSNVIG00000016511	GNE (ENSNVIG00000016422) #25	RNF38 (ENSNVIG00000016353) #26	MELK (ENSNVIG00000016306) #27	ENSNVIG00000016301	PAX5 (ENSNVIG00000016049) #28	ZCCHC7 (ENSNVIG00000016001) #29	GRHPR (ENSNVIG00000015986) #30	ZBTB5 (ENSNVIG00000015984) #31	RPA49 (ENSNVIG00000015941) #32	FBX10 (ENSNVIG00000015899) #33	FRMPD1 (ENSNVIG00000015854) #35	TRMT10B (ENSNVIG00000015833) #36
Ursidae	ANCESTRAL SPECIES	6	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.c #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b.d #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.b ##20	ENSGT00390000018540 #21	ENSGT00950000185238	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Giant Panda	MODERN SPECIES	17	NPR2 (ENSAMEG00000009829) #11	SPAG8 (ENSAMEG00000028050) #12	HINT2 (ENSAMEG00000009919) #13	FAM221B (ENSAMEG00000009933) #15	TMEM8B (ENSAMEG00000009936) #14	ENSAMEG00000019337	OR13J1 (ENSAMEG00000019358) #16	HRCT1 (ENSAMEG00000026974) #17	SPAAR (ENSAMEG00000023597) #18	ENSAMEG00000025981 #19	ENSAMEG00000027781 #19	ENSAMEG00000029100 ##20	ENSAMEG00000024445 #20	ENSAMEG00000025476 ##20	RECK (ENSAMEG00000009966) #21	GLIPR2 (ENSAMEG00000009987) #22	CCIN (ENSAMEG00000019411) #23	CLTA (ENSAMEG00000009992) #24	GNE (ENSAMEG00000010013) #25	RNF38 (ENSAMEG00000010041) #26	MELK (ENSAMEG00000010058) #27	PAX5 (ENSAMEG00000010127) #28	ZCCHC7 (ENSAMEG00000010146) #29	GRHPR (ENSAMEG00000010152) #30	ZBTB5 (ENSAMEG00000019436) #31	POLR1E (ENSAMEG00000010193) #32	FBXO10 (ENSAMEG00000005045) #33	FRMPD1 (ENSAMEG00000005024) #35	TRMT10B (ENSAMEG00000005010) #36	EXOSC3 (ENSAMEG00000005004) #37	DCAF10 (ENSAMEG00000004993)
Ursus	ANCESTRAL SPECIES	33										ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT00390000018540 #21	ENSGT00950000185238	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00390000006922.m.b.a.d	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Polar bear	MODERN SPECIES	311										ENSUMAG00000011155 ##20	ENSUMAG00000011160 ##20	ENSUMAG00000011164 ##20	ENSUMAG00000011166 #20	RECK (ENSUMAG00000011175) #21	ENSUMAG00000011186	GLIPR2 (ENSUMAG00000011189) #22	CCIN (ENSUMAG00000011190) #23	CLTA (ENSUMAG00000011192) #24	GNE (ENSUMAG00000011200) #25	RNF38 (ENSUMAG00000011208) #26	MELK (ENSUMAG00000011269) #27	PAX5 (ENSUMAG00000011435) #28	ENSUMAG00000011467	ZCCHC7 (ENSUMAG00000011473) #29	GRHPR (ENSUMAG00000011477) #30	ZBTB5 (ENSUMAG00000011489) #31	POLR1E (ENSUMAG00000011496) #32	FBXO10 (ENSUMAG00000011509) #33	TOMM5 (ENSUMAG00000011536) #34	FRMPD1 (ENSUMAG00000011544) #35	TRMT10B (ENSUMAG00000011567) #36
American black bear	MODERN SPECIES	4795														RECK (ENSUAMG00000026323) #21	ENSUAMG00000026337	ENSUAMG00000026338 #22	CCIN (ENSUAMG00000026339) #23
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
Equus	ANCESTRAL SPECIES	35	ENSGT00940000161646	ENSGT01030000234542.b.b.a.b	ENSGT00940000157006	ENSGT00940000160343 #7	ENSGT00390000010998 #8	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT01040000240406.A.a #16	ENSGT00850000133592 #18	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889.ic #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37	ENSGT00390000012666
Donkey	MODERN SPECIES	1	TLN1 (ENSEASG00005013998)	CREB3 (ENSEASG00005014010) #7	GBA2 (ENSEASG00005014016) #8	RGP1 (ENSEASG00005014021) #9	MSMP (ENSEASG00005033330) #10	NPR2 (ENSEASG00005014034) #11	SPAG8 (ENSEASG00005014039) #12	HINT2 (ENSEASG00005014042) #13	FAM221B (ENSEASG00005014045) #15	TMEM8B (ENSEASG00005014048) #14	OR13J1 (ENSEASG00005000073) #16	ENSEASG00005029394	SPAAR (ENSEASG00005000146) #18	ENSEASG00005038739	RECK (ENSEASG00005000228) #21	ENSEASG00005028596 #22	CLTA (ENSEASG00005000288) #24	GNE (ENSEASG00005000292) #25	RNF38 (ENSEASG00005000297) #26	MELK (ENSEASG00005000336) #27	ENSEASG00005000599 #23	PAX5 (ENSEASG00005000609) #28	ZCCHC7 (ENSEASG00005000659) #29	GRHPR (ENSEASG00005000668) #30	ZBTB5 (ENSEASG00005000672) #31	POLR1E (ENSEASG00005000675) #32	FBXO10 (ENSEASG00005000679) #33	ENSEASG00005038121	FRMPD1 (ENSEASG00005000690) #35	TRMT10B (ENSEASG00005000696) #36	EXOSC3 (ENSEASG00005000698) #37
Horse	MODERN SPECIES	17	CA9 (ENSECAG00000010059)	TPM2 (ENSECAG00000014009)	TLN1 (ENSECAG00000016464)	CREB3 (ENSECAG00000000184) #7	GBA2 (ENSECAG00000000580) #8	RGP1 (ENSECAG00000009981) #9	NPR2 (ENSECAG00000011281) #11	SPAG8 (ENSECAG00000034809) #12	HINT2 (ENSECAG00000000037) #13	FAM221B (ENSECAG00000000119) #15	TMEM8B (ENSECAG00000000440) #14	ENSECAG00000045127	RECK (ENSECAG00000010426) #21	ENSECAG00000038751	ENSECAG00000056860	GLIPR2 (ENSECAG00000012502) #22	CLTA (ENSECAG00000012884) #24	GNE (ENSECAG00000014124) #25	RNF38 (ENSECAG00000016289) #26	ENSECAG00000047237	ENSECAG00000043625 #23	MELK (ENSECAG00000020698) #27	PAX5 (ENSECAG00000000551) #28	ZCCHC7 (ENSECAG00000006883) #29	GRHPR (ENSECAG00000008981) #30	ZBTB5 (ENSECAG00000004450) #31	FBXO10 (ENSECAG00000019472) #33	POLR1E (ENSECAG00000014669) #32	ENSECAG00000043111	FRMPD1 (ENSECAG00000020791) #35	TRMT10B (ENSECAG00000022650) #36
Chiroptera	ANCESTRAL SPECIES	8	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Megabat	MODERN SPECIES	274															RECK (ENSPVAG00000017912) #21	GLIPR2 (ENSPVAG00000017913) #22	CCIN (ENSPVAG00000017914) #23
Microchiroptera	ANCESTRAL SPECIES	7	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b.f ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Microbat	MODERN SPECIES	1360	GBA2 (ENSMLUG00000011598) #8	RGP1 (ENSMLUG00000011627) #9	MSMP (ENSMLUG00000029806) #10	NPR2 (ENSMLUG00000011640) #11	SPAG8 (ENSMLUG00000011663) #12	HINT2 (ENSMLUG00000023856) #13	FAM221B (ENSMLUG00000011681) #15	TMEM8B (ENSMLUG00000011695) #14	ENSMLUG00000023784	OR13J1 (ENSMLUG00000011749) #16	ENSMLUG00000030318 ##20	ENSMLUG00000025704 ##20	ENSMLUG00000028506 ##20	ENSMLUG00000025235 ##20	RECK (ENSMLUG00000006798) #21	GLIPR2 (ENSMLUG00000011791) #22	CCIN (ENSMLUG00000001075) #23	CLTA (ENSMLUG00000006834) #24	GNE (ENSMLUG00000006848) #25	RNF38 (ENSMLUG00000007226) #26	MELK (ENSMLUG00000007244) #27
Greater horseshoe bat	MODERN SPECIES	3	CREB3 (ENSRFEG00010011868) #7	GBA2 (ENSRFEG00010012027) #8	RGP1 (ENSRFEG00010012456) #9	MSMP (ENSRFEG00010012580) #10	NPR2 (ENSRFEG00010012644) #11	SPAG8 (ENSRFEG00010012775) #12	HINT2 (ENSRFEG00010012810) #13	FAM221B (ENSRFEG00010012861) #15	TMEM8B (ENSRFEG00010012976) #14	ENSRFEG00010013200	OR13J1 (ENSRFEG00010013263) #16	HRCT1 (ENSRFEG00010013278) #17	ENSRFEG00010013448 ##20	ENSRFEG00010013465 ##20	RECK (ENSRFEG00010013497) #21	GLIPR2 (ENSRFEG00010013633) #22	CCIN (ENSRFEG00010013778) #23	CLTA (ENSRFEG00010013810) #24	GNE (ENSRFEG00010014157) #25	RNF38 (ENSRFEG00010014700) #26	MELK (ENSRFEG00010015131) #27	PAX5 (ENSRFEG00010016828) #28	ZCCHC7 (ENSRFEG00010017047) #29	GRHPR (ENSRFEG00010017075) #30	ZBTB5 (ENSRFEG00010017135) #31	POLR1E (ENSRFEG00010017160) #32	FBXO10 (ENSRFEG00010017223) #33	FRMPD1 (ENSRFEG00010017305) #35	TRMT10B (ENSRFEG00010017355) #36	EXOSC3 (ENSRFEG00010017469) #37	DCAF10 (ENSRFEG00010017529)
Atlantogenata	ANCESTRAL SPECIES	12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Afrotheria	ANCESTRAL SPECIES		ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000164197	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Afrotheria_a	ANCESTRAL SPECIES		ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00770000120611.A #15	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT01040000240406.A.a #16	ENSGT00510000049544 #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00940000165421	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37	ENSGT00390000012666
Elephant	MODERN SPECIES	472	RGP1 (ENSLAFG00000015090) #9	MSMP (ENSLAFG00000020623) #10	NPR2 (ENSLAFG00000015001) #11	HINT2 (ENSLAFG00000015022) #13	FAM221B (ENSLAFG00000007688) #15	TMEM8B (ENSLAFG00000007693) #14	ENSLAFG00000026344	OR13J1 (ENSLAFG00000007698) #16	HRCT1 (ENSLAFG00000026896) #17	ENSLAFG00000028088	ENSLAFG00000016125 ##20	ENSLAFG00000031544 ##20	ENSLAFG00000013120 ##20	ENSLAFG00000028126 ##20	RECK (ENSLAFG00000008926) #21	GLIPR2 (ENSLAFG00000017650) #22	CCIN (ENSLAFG00000017655) #23	CLTA (ENSLAFG00000017657) #24	GNE (ENSLAFG00000017661) #25	RNF38 (ENSLAFG00000010399) #26	MELK (ENSLAFG00000018171) #27	PAX5 (ENSLAFG00000028851) #28	ENSLAFG00000013512	GRHPR (ENSLAFG00000025921) #30	ZBTB5 (ENSLAFG00000014479) #31	POLR1E (ENSLAFG00000012831) #32	FBXO10 (ENSLAFG00000000169) #33	FRMPD1 (ENSLAFG00000000712) #35	TRMT10B (ENSLAFG00000000715) #36	EXOSC3 (ENSLAFG00000000716) #37	DCAF10 (ENSLAFG00000018560)
Hyrax	MODERN SPECIES	1762																GLIPR2 (ENSPCAG00000004578) #22
Tenrec	MODERN SPECIES	8701																GLIPR2 (ENSETEG00000008008) #22	ENSETEG00000008012	CLTA (ENSETEG00000008013) #24	GNE (ENSETEG00000008016) #25
Xenarthra	ANCESTRAL SPECIES	25	ENSGT00390000006136 #9	ENSGT00940000154371.a #10	ENSGT00940000156985 #11	ENSGT00640000091617 #12	ENSGT00940000157905 #13	ENSGT00940000157861 #14	ENSGT00940000164268	ENSGT00850000133592 #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.b #19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b ##20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #20	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Sloth	MODERN SPECIES	1973																GLIPR2 (ENSCHOG00000010420) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3598														ENSDNOG00000042371	DIAPH2 (ENSDNOG00000016969)	ENSDNOG00000035957 #22	ENSDNOG00000048830	ENSDNOG00000016976	ENSDNOG00000048401
Armadillo	MODERN SPECIES	1451	RGP1 (ENSDNOG00000024275) #9	MSMP (ENSDNOG00000025810) #10	NPR2 (ENSDNOG00000009023) #11	SPAG8 (ENSDNOG00000009062) #12	HINT2 (ENSDNOG00000009083) #13	TMEM8B (ENSDNOG00000039713) #14	ENSDNOG00000040303	SPAAR (ENSDNOG00000044089) #18	OR2S2 (ENSDNOG00000031555) #19	ENSDNOG00000038054 ##20	ENSDNOG00000044270 ##20	ENSDNOG00000039126 ##20	ENSDNOG00000038762 #20	ENSDNOG00000045255 ##20	RECK (ENSDNOG00000008915) #21	ENSDNOG00000008950 #22	CCIN (ENSDNOG00000008957) #23	CLTA (ENSDNOG00000045918) #24	ENSDNOG00000041862	GNE (ENSDNOG00000008983) #25	RNF38 (ENSDNOG00000016606) #26	MELK (ENSDNOG00000010825) #27	ENSDNOG00000048444	PAX5 (ENSDNOG00000035956) #28	ENSDNOG00000038694	ZCCHC7 (ENSDNOG00000004148) #29	GRHPR (ENSDNOG00000037952) #30	ZBTB5 (ENSDNOG00000010253) #31	POLR1E (ENSDNOG00000010257) #32	FBXO10 (ENSDNOG00000010283) #33	ENSDNOG00000035680
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00390000003648	ENSGT00390000000050	ENSGT00940000160533	ENSGT00940000160447	ENSGT00390000009109	ENSGT01100000263552.h.b	ENSGT00940000162257	ENSGT00940000160953.A	ENSGT00940000154838.C	ENSGT00940000161282	ENSGT00940000161791	ENSGT00940000164730	ENSGT00940000161873	ENSGT01040000240406.A.b.b.k ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Marsupialia_b	ANCESTRAL SPECIES	18	ENSGT00390000000050	ENSGT00940000160533	ENSGT00940000160447	ENSGT00390000009109	ENSGT01100000263552.h.b	ENSGT00940000162257	ENSGT00940000160953.A.c	ENSGT00940000154838.C	ENSGT00940000161282	ENSGT00940000161791	ENSGT00940000164730	ENSGT00940000161873.m.b	ENSGT00940000161873.m.a	ENSGT01040000240406.A.b.b.k ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Diprotodontia	ANCESTRAL SPECIES	14	ENSGT00390000000050	ENSGT00940000160533	ENSGT00940000160447	ENSGT00390000009109	ENSGT01100000263552.h.b	ENSGT00940000162257	ENSGT00940000160953.A.c	ENSGT00940000154838.C	ENSGT00940000161282	ENSGT00940000161791	ENSGT00940000164730	ENSGT00940000161873.m.b	ENSGT00940000161873.m.a	ENSGT01040000240406.A.b.b.k ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364 #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36	ENSGT00940000153596.A #37
Diprotodontia_a	ANCESTRAL SPECIES	13	ENSGT00390000000050	ENSGT00940000160533	ENSGT00940000160447	ENSGT00390000009109	ENSGT01100000263552.h.b	ENSGT00940000162257	ENSGT00940000160953.A.c	ENSGT00940000154838.C	ENSGT00940000161282	ENSGT00940000161791	ENSGT00940000164730	ENSGT00940000161873.m.b	ENSGT00940000161873.m.a	ENSGT01040000240406.A.b.b.k ##20	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #28	ENSGT00950000183041.B #29	ENSGT00940000158578 #30	ENSGT00940000160246 #31	ENSGT00390000018004 #32	ENSGT00530000063425.a.a.a.b #33	ENSGT00940000163364.w #34	ENSGT00940000163364.x #34	ENSGT00950000183035.b #35	ENSGT00530000063169.b.a #36
koala	MODERN SPECIES	104	SLC5A2 (ENSPCIG00000029082)	TGFB1I1 (ENSPCIG00000029081)	ARMC5 (ENSPCIG00000029080)	ENSPCIG00000029079	COX6A2 (ENSPCIG00000033564)	ENSPCIG00000004073	ENSPCIG00000034442	ENSPCIG00000034402	ITGAX (ENSPCIG00000003698)	ITGAM (ENSPCIG00000001728)	TRIM72 (ENSPCIG00000036684)	PYDC1 (ENSPCIG00000014885)	ENSPCIG00000014879	ENSPCIG00000014875	RECK (ENSPCIG00000014867) #21	ENSPCIG00000014862 #22	ENSPCIG00000014863	CCIN (ENSPCIG00000014861) #23	CLTA (ENSPCIG00000014859) #24	GNE (ENSPCIG00000014854) #25	ENSPCIG00000014848	RNF38 (ENSPCIG00000014839) #26	MELK (ENSPCIG00000014826) #27	PAX5 (ENSPCIG00000014813) #28	ZCCHC7 (ENSPCIG00000014809) #29	GRHPR (ENSPCIG00000014804) #30	POLR1E (ENSPCIG00000014798) #32	FBXO10 (ENSPCIG00000014795) #33	ENSPCIG00000035940 #34	ENSPCIG00000032470	ENSPCIG00000037145 #35
Common wonbat	MODERN SPECIES	903	RUSF1 (ENSVURG00010009234)	SLC5A2 (ENSVURG00010009408)	TGFB1I1 (ENSVURG00010009430)	ARMC5 (ENSVURG00010009449)	ENSVURG00010009491	ENSVURG00010009528	ITGAD (ENSVURG00010009557)	ITGAX (ENSVURG00010009664)	ITGAM (ENSVURG00010009783)	TRIM72 (ENSVURG00010011275)	PYDC1 (ENSVURG00010011280)	ENSVURG00010011290	ENSVURG00010011302	ENSVURG00010011307 ##20	RECK (ENSVURG00010011312) #21	GLIPR2 (ENSVURG00010011342) #22	ENSVURG00010011354	CCIN (ENSVURG00010011361) #23	CLTA (ENSVURG00010011368) #24	GNE (ENSVURG00010011389) #25	ENSVURG00010011455	RNF38 (ENSVURG00010011469) #26	MELK (ENSVURG00010011521) #27	PAX5 (ENSVURG00010011542) #28	ZCCHC7 (ENSVURG00010011560) #29	GRHPR (ENSVURG00010011578) #30	ZBTB5 (ENSVURG00010011592) #31	POLR1E (ENSVURG00010011600) #32	FBXO10 (ENSVURG00010011611) #33	ENSVURG00010011628 #34	FRMPD1 (ENSVURG00010011633) #35
Tasmanian devil	MODERN SPECIES		MAPK7 (ENSSHAG00000013583)	MFAP4 (ENSSHAG00000028914)	ENSSHAG00000013840	ENSSHAG00000013925	RUSF1 (ENSSHAG00000013948)	SLC5A2 (ENSSHAG00000013984)	TGFB1I1 (ENSSHAG00000014056)	ARMC5 (ENSSHAG00000021017)	ENSSHAG00000026975	ITGAD (ENSSHAG00000014262)	ITGAX (ENSSHAG00000002769)	ENSSHAG00000000278	ENSSHAG00000002310	ENSSHAG00000004655 #21	ENSSHAG00000003640	ENSSHAG00000026741 #22	CCIN (ENSSHAG00000007165) #23	CLTA (ENSSHAG00000024140) #24	GNE (ENSSHAG00000008041) #25	RNF38 (ENSSHAG00000022975) #26	MELK (ENSSHAG00000010319) #27	PAX5 (ENSSHAG00000012375) #28	ENSSHAG00000014234	ZCCHC7 (ENSSHAG00000014544) #29	GRHPR (ENSSHAG00000015897) #30	ZBTB5 (ENSSHAG00000015981) #31	POLR1E (ENSSHAG00000021869) #32	FBXO10 (ENSSHAG00000016176) #33	ENSSHAG00000016364	ENSSHAG00000030934	ENSSHAG00000027500
Opossum	MODERN SPECIES	5	ENSMODG00000001121	RUSF1 (ENSMODG00000001138)	SLC5A2 (ENSMODG00000001258)	TGFB1I1 (ENSMODG00000001497)	ARMC5 (ENSMODG00000001517)	ENSMODG00000001809	ITGAD (ENSMODG00000039057)	ENSMODG00000002512	ITGAM (ENSMODG00000025261)	ENSMODG00000025255	TRIM72 (ENSMODG00000002561)	PYCARD (ENSMODG00000002568)	ENSMODG00000002578 ##20	ENSMODG00000041636	RECK (ENSMODG00000002595) #21	ENSMODG00000002601 #22	CCIN (ENSMODG00000025228) #23	CLTA (ENSMODG00000002610) #24	GNE (ENSMODG00000002632) #25	RNF38 (ENSMODG00000002665) #26	MELK (ENSMODG00000002695) #27	ENSMODG00000028681	PAX5 (ENSMODG00000002720) #28	ZCCHC7 (ENSMODG00000002729) #29	GRHPR (ENSMODG00000002862) #30	ZBTB5 (ENSMODG00000025213) #31	POLR1E (ENSMODG00000002884) #32	FBXO10 (ENSMODG00000002898) #33	ENSMODG00000039025 #34	FRMPD1 (ENSMODG00000002930) #35	ENSMODG00000040917
Platypus	MODERN SPECIES	86	BRD9 (ENSOANG00000006284)	ENSOANG00000007711	ENSOANG00000043052	TPPP (ENSOANG00000036144)	ENSOANG00000011257	SLC9A3 (ENSOANG00000014871)	ENSOANG00000042988	NFX1 (ENSOANG00000002524)	CHMP5 (ENSOANG00000049243)	ENSOANG00000043589	ANKS6 (ENSOANG00000014874)	ENSOANG00000014875	ENSOANG00000014876	TGFBR1 (ENSOANG00000040853)	RECK (ENSOANG00000014877) #21	GLIPR2 (ENSOANG00000043736) #22	ENSOANG00000046098	SEC61B (ENSOANG00000050916)	NR4A3 (ENSOANG00000050764)	STX17 (ENSOANG00000046857)	ERP44 (ENSOANG00000002120)	INVS (ENSOANG00000002119)	TEX10 (ENSOANG00000002117)	ENSOANG00000022432	MSANTD3 (ENSOANG00000002115)	SERPINB8 (ENSOANG00000002112)	SERPINB1 (ENSOANG00000002109)	MC4R (ENSOANG00000002108)	ENSOANG00000002106	CDH20 (ENSOANG00000003639)	PIGN (ENSOANG00000002105)
Sauria	ANCESTRAL SPECIES	76													ENSGT00940000164061	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01100000263773	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT00960000188468	ENSGT01030000234613.a.a
Archelosauria	ANCESTRAL SPECIES	6													ENSGT00940000164061	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01100000263773	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT00960000188468
Archosauria	ANCESTRAL SPECIES		ENSGT00390000014501	ENSGT00950000183199.b	ENSGT00940000156325	ENSGT00940000157657	ENSGT00940000158302.e	ENSGT00390000017432	ENSGT00950000183170.b.a	ENSGT00940000153875.c	ENSGT00530000063884.a	ENSGT00940000158616	ENSGT00940000162507.A	ENSGT01030000234531.C	ENSGT00940000164061	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT00960000188468	ENSGT01030000234613.a.a
Aves	ANCESTRAL SPECIES	24	ENSGT00940000161612	ENSGT00390000014501	ENSGT00950000183199.b	ENSGT00940000156325	ENSGT00940000157657	ENSGT00940000158302.e	ENSGT00390000017432	ENSGT00950000183170.b.a	ENSGT00940000153875.c	ENSGT00940000158616	ENSGT00940000162507.A	ENSGT01030000234531.C	ENSGT00940000164061	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT00960000188468	ENSGT01030000234613.a.a
Neognathae	ANCESTRAL SPECIES		ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787	ENSGT00390000014772	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT00960000188468	ENSGT01030000234613.a.a
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787	ENSGT00390000014772	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00940000164265.C
Passeriformes	ANCESTRAL SPECIES		ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787	ENSGT00390000014772	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00940000164265.C
Great tit	MODERN SPECIES	11	PTGR3 (ENSPMJG00000014316)	TSHZ1 (ENSPMJG00000014315)	ZNF516 (ENSPMJG00000014303)	ZNF236 (ENSPMJG00000014287)	MBP (ENSPMJG00000014269)	GALR1 (ENSPMJG00000014259)	TDP2 (ENSPMJG00000014256)	ACOT13 (ENSPMJG00000014254)	C6orf62 (ENSPMJG00000014252)	GMNN (ENSPMJG00000014251)	RIPOR2 (ENSPMJG00000014241)	CARMIL1 (ENSPMJG00000014196)	SCGN (ENSPMJG00000014177)	PARD6G (ENSPMJG00000014174)	ENSPMJG00000014172	GLIPR2 (ENSPMJG00000014169) #22	ENSPMJG00000014167	ALG2 (ENSPMJG00000014159)	SEC61B (ENSPMJG00000014157)	NR4A3 (ENSPMJG00000014126)	STX17 (ENSPMJG00000014124)	ERP44 (ENSPMJG00000014122)	INVS (ENSPMJG00000014119)	TEX10 (ENSPMJG00000014070)	ENSPMJG00000014069	MSANTD3 (ENSPMJG00000014067)	AHRR (ENSPMJG00000014064)	ENSPMJG00000014062	PDCD6 (ENSPMJG00000014033)	EXOC3 (ENSPMJG00000014032)	ENSPMJG00000014031
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787	ENSGT00390000014772	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a.h	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00940000164265.C
Flycatcher	MODERN SPECIES	11	ZNF407 (ENSFALG00000004663)	PTGR3 (ENSFALG00000022974)	TSHZ1 (ENSFALG00000004672)	ZNF516 (ENSFALG00000004674)	ZNF236 (ENSFALG00000004682)	MBP (ENSFALG00000004700)	TDP2 (ENSFALG00000004710)	GALR1 (ENSFALG00000026015)	C6orf62 (ENSFALG00000004718)	GMNN (ENSFALG00000028466)	RIPOR2 (ENSFALG00000004725)	CARMIL1 (ENSFALG00000004729)	SCGN (ENSFALG00000004743)	ENSFALG00000004746	ENSFALG00000028839	ENSFALG00000004757 #22	ENSFALG00000025474	ALG2 (ENSFALG00000028145)	SEC61B (ENSFALG00000026901)	NR4A3 (ENSFALG00000004779)	STX17 (ENSFALG00000025843)	ERP44 (ENSFALG00000004800)	INVS (ENSFALG00000004814)	TEX10 (ENSFALG00000004847)	ENSFALG00000023421	MSANTD3 (ENSFALG00000004875)	ENSFALG00000004883	ENSFALG00000004887	ENSFALG00000004890	ENSFALG00000025107	ENSFALG00000004894
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787	ENSGT00390000014772	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a.h	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00940000164265.C
Passeroidea	ANCESTRAL SPECIES	2	ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787	ENSGT00390000014772	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a.h	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00940000164265.C
Common canary	MODERN SPECIES		PTGR3 (ENSSCAG00000007510)	TSHZ1 (ENSSCAG00000007501)	ZNF516 (ENSSCAG00000007476)	ZNF236 (ENSSCAG00000007444)	MBP (ENSSCAG00000007416)	GALR1 (ENSSCAG00000007394)	TDP2 (ENSSCAG00000007372)	ACOT13 (ENSSCAG00000007367)	C6orf62 (ENSSCAG00000007363)	GMNN (ENSSCAG00000007357)	RIPOR2 (ENSSCAG00000007353)	CARMIL1 (ENSSCAG00000007329)	SCGN (ENSSCAG00000007320)	PARD6G (ENSSCAG00000007314)	BLOC1S4 (ENSSCAG00000007306)	GLIPR2 (ENSSCAG00000007302) #22	ENSSCAG00000007298	ALG2 (ENSSCAG00000007290)	SEC61B (ENSSCAG00000007287)	NR4A3 (ENSSCAG00000007272)	STX17 (ENSSCAG00000007267)	ERP44 (ENSSCAG00000007242)	INVS (ENSSCAG00000007225)	TEX10 (ENSSCAG00000007212)	ENSSCAG00000007201	MSANTD3 (ENSSCAG00000007199)	AHRR (ENSSCAG00000007182)	ENSSCAG00000007173	PDCD6 (ENSSCAG00000007167)	EXOC3 (ENSSCAG00000007160)	ENSSCAG00000007157
Zebra finch	MODERN SPECIES	12	PTGR3 (ENSTGUG00000024919)	TSHZ1 (ENSTGUG00000009111)	ZNF516 (ENSTGUG00000009106)	ZNF236 (ENSTGUG00000009074)	MBP (ENSTGUG00000009051)	GALR1 (ENSTGUG00000024217)	TDP2 (ENSTGUG00000009035)	ENSTGUG00000020283	C6orf62 (ENSTGUG00000029400)	GMNN (ENSTGUG00000009018)	RIPOR2 (ENSTGUG00000008974)	CARMIL1 (ENSTGUG00000008921)	SCGN (ENSTGUG00000008902)	PARD6G (ENSTGUG00000008898)	BLOC1S4 (ENSTGUG00000019279)	GLIPR2 (ENSTGUG00000027359) #22	IFI6 (ENSTGUG00000021692)	ALG2 (ENSTGUG00000008879)	SEC61B (ENSTGUG00000008873)	NR4A3 (ENSTGUG00000008853)	STX17 (ENSTGUG00000008839)	ERP44 (ENSTGUG00000008812)	INVS (ENSTGUG00000008787)	TEX10 (ENSTGUG00000008765)	ENSTGUG00000008753	MSANTD3 (ENSTGUG00000008752)	AHRR (ENSTGUG00000008731)	ENSTGUG00000027181	PDCD6 (ENSTGUG00000008718)	EXOC3 (ENSTGUG00000008684)	ENSTGUG00000008651
Medium ground finch	MODERN SPECIES	14	PTGR3 (ENSGFOG00000000820)	TSHZ1 (ENSGFOG00000000816)	ZNF516 (ENSGFOG00000000810)	ZNF236 (ENSGFOG00000000761)	MBP (ENSGFOG00000000734)	GALR1 (ENSGFOG00000000726)	TDP2 (ENSGFOG00000000715)	ACOT13 (ENSGFOG00000000710)	C6orf62 (ENSGFOG00000000703)	GMNN (ENSGFOG00000000698)	RIPOR2 (ENSGFOG00000000680)	CARMIL1 (ENSGFOG00000000607)	SCGN (ENSGFOG00000000560)	PARD6G (ENSGFOG00000000550)	BLOC1S4 (ENSGFOG00000000516)	GLIPR2 (ENSGFOG00000000495) #22	ENSGFOG00000000488	ALG2 (ENSGFOG00000000482)	SEC61B (ENSGFOG00000000475)	NR4A3 (ENSGFOG00000000456)	STX17 (ENSGFOG00000000445)	ERP44 (ENSGFOG00000000435)	INVS (ENSGFOG00000000400)	TEX10 (ENSGFOG00000000382)	ENSGFOG00000000367	MSANTD3 (ENSGFOG00000000359)	AHRR (ENSGFOG00000000350)	ENSGFOG00000000179	PDCD6 (ENSGFOG00000000173)	EXOC3 (ENSGFOG00000008158)	ENSGFOG00000008146
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787	ENSGT00390000014772	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a.d	ENSGT00940000155112.B	ENSGT00950000183108.a	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00940000164265.C
Golden eagle	MODERN SPECIES	20	PTGR3 (ENSACCG00020013119)	TSHZ1 (ENSACCG00020013133)	ZNF516 (ENSACCG00020013209)	ZNF236 (ENSACCG00020013273)	MBP (ENSACCG00020013328)	GALR1 (ENSACCG00020013352)	TDP2 (ENSACCG00020013366)	ACOT13 (ENSACCG00020013391)	C6orf62 (ENSACCG00020013408)	GMNN (ENSACCG00020013420)	RIPOR2 (ENSACCG00020000812)	CARMIL1 (ENSACCG00020001099)	SCGN (ENSACCG00020001271)	PARD6G (ENSACCG00020001299)	BLOC1S4 (ENSACCG00020001306)	GLIPR2 (ENSACCG00020001319) #22	ENSACCG00020001334	ALG2 (ENSACCG00020001347)	SEC61B (ENSACCG00020001361)	NR4A3 (ENSACCG00020001372)	STX17 (ENSACCG00020001389)	ERP44 (ENSACCG00020001405)	INVS (ENSACCG00020001453)	TEX10 (ENSACCG00020001504)	ENSACCG00020001540	MSANTD3 (ENSACCG00020001575)	AHRR (ENSACCG00020001585)	ENSACCG00020001606	PDCD6 (ENSACCG00020001652)	EXOC3 (ENSACCG00020001660)	ENSACCG00020001721
Kakapo	MODERN SPECIES		TSHZ1 (ENSSHBG00005002225)	ZNF516 (ENSSHBG00005002233)	ZNF236 (ENSSHBG00005002251)	MBP (ENSSHBG00005002306)	GALR1 (ENSSHBG00005002321)	TDP2 (ENSSHBG00005002339)	ACOT13 (ENSSHBG00005002348)	C6orf62 (ENSSHBG00005002355)	GMNN (ENSSHBG00005002373)	ENSSHBG00005002398	ENSSHBG00005002417	CARMIL1 (ENSSHBG00005002905)	SCGN (ENSSHBG00005004158)	PARD6G (ENSSHBG00005004167)	BLOC1S4 (ENSSHBG00005004172)	GLIPR2 (ENSSHBG00005004179) #22	ENSSHBG00005004186	ALG2 (ENSSHBG00005004194)	SEC61B (ENSSHBG00005004195)	NR4A3 (ENSSHBG00005004206)	STX17 (ENSSHBG00005004218)	ERP44 (ENSSHBG00005004230)	INVS (ENSSHBG00005004242)	TEX10 (ENSSHBG00005004257)	ENSSHBG00005004270	MSANTD3 (ENSSHBG00005004280)	ENSSHBG00005004283	ENSSHBG00005004288	AHRR (ENSSHBG00005004297)	ENSSHBG00005004302	PDCD6 (ENSSHBG00005004308)
Galloanserae	ANCESTRAL SPECIES		ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787	ENSGT00390000014772	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT00960000188468	ENSGT01030000234613.a.a
Anatidae	ANCESTRAL SPECIES	3	ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787	ENSGT00390000014772	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT00960000188468	ENSGT01030000234613.a.a
Pink-footed goose	MODERN SPECIES	14	PTGR3 (ENSABRG00000018972)	TSHZ1 (ENSABRG00000018981)	ZNF516 (ENSABRG00000018997)	ZNF236 (ENSABRG00000019008)	MBP (ENSABRG00000019050)	ENSABRG00000019054	TDP2 (ENSABRG00000019066)	ACOT13 (ENSABRG00000019070)	C6orf62 (ENSABRG00000019077)	GMNN (ENSABRG00000019086)	RIPOR2 (ENSABRG00000019098)	CARMIL1 (ENSABRG00000019131)	SCGN (ENSABRG00000019181)	PARD6G (ENSABRG00000019191)	BLOC1S4 (ENSABRG00000019197)	GLIPR2 (ENSABRG00000019201) #22	ENSABRG00000019204	ALG2 (ENSABRG00000019207)	SEC61B (ENSABRG00000019208)	NR4A3 (ENSABRG00000019222)	STX17 (ENSABRG00000019227)	ERP44 (ENSABRG00000019231)	INVS (ENSABRG00000019235)	TEX10 (ENSABRG00000019236)	ENSABRG00000019238	MSANTD3 (ENSABRG00000019244)	AHRR (ENSABRG00000019246)	ENSABRG00000019250	PDCD6 (ENSABRG00000019255)	ENSABRG00000019258	EXOC3 (ENSABRG00000000679)
Duck	MODERN SPECIES	10	TSHZ1 (ENSAPLG00000015100)	ZNF516 (ENSAPLG00000015083)	ZNF236 (ENSAPLG00000014682)	MBP (ENSAPLG00000014659)	GALR1 (ENSAPLG00000011047)	TDP2 (ENSAPLG00000030813)	ACOT13 (ENSAPLG00000024331)	C6orf62 (ENSAPLG00000013019)	GMNN (ENSAPLG00000013031)	RIPOR2 (ENSAPLG00000013099)	CARMIL1 (ENSAPLG00000016185)	ENSAPLG00000030691	ENSAPLG00000030440	PARD6G (ENSAPLG00000002037)	BLOC1S4 (ENSAPLG00000011052)	GLIPR2 (ENSAPLG00000011053) #22	ENSAPLG00000011142	ALG2 (ENSAPLG00000011154)	SEC61B (ENSAPLG00000011260)	NR4A3 (ENSAPLG00000011263)	STX17 (ENSAPLG00000011569)	ERP44 (ENSAPLG00000011639)	INVS (ENSAPLG00000011911)	TEX10 (ENSAPLG00000014122)	ENSAPLG00000013907	MSANTD3 (ENSAPLG00000013833)	AHRR (ENSAPLG00000013653)	ENSAPLG00000018399	PDCD6 (ENSAPLG00000013444)	EXOC3 (ENSAPLG00000010055)	ENSAPLG00000009683
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787.u.a	ENSGT00390000014772	ENSGT01050000244841.A.b.a.b.a.a	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00940000164265.C
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00920000149172	ENSGT00950000183051.a.a	ENSGT00940000160839	ENSGT00940000156787.u.a	ENSGT00390000014772.g	ENSGT00940000159286.b	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a	ENSGT00950000183211.a.b	ENSGT00390000006790.b	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00940000164265.C
Turkey	MODERN SPECIES	22	ENSMGAG00000008393	CBLN2 (ENSMGAG00000008302)	ENSMGAG00000008273	ENSMGAG00000015437	ENSMGAG00000018954	ENSMGAG00000008121	ENSMGAG00000008124	ENSMGAG00000008157	DIPK1C (ENSMGAG00000008201)	TIMM21 (ENSMGAG00000008261)	ENSMGAG00000008213	C18orf63 (ENSMGAG00000008208)	ENSMGAG00000007802	ENSMGAG00000007795	ENSMGAG00000007830	ENSMGAG00000007821 #22	ENSMGAG00000019137	ENSMGAG00000021838	ENSMGAG00000017743	ENSMGAG00000007842	ENSMGAG00000019200	ENSMGAG00000007965	ENSMGAG00000007931	TDP2 (ENSMGAG00000008014)	ENSMGAG00000008012	C6orf62 (ENSMGAG00000007993)	ENSMGAG00000008020	ENSMGAG00000018380	ENSMGAG00000008029	ENSMGAG00000008045	ENSMGAG00000018360
Chicken	MODERN SPECIES	11	TSHZ1 (ENSGALG00010001153)	ZNF516 (ENSGALG00010007867)	ZNF236 (ENSGALG00010007795)	MBP (ENSGALG00010007781)	GALR1 (ENSGALG00010007717)	TDP2 (ENSGALG00010008035)	ACOT13 (ENSGALG00010008033)	C2H6ORF62 (ENSGALG00010008027)	GMNN (ENSGALG00010008017)	FAM65B (ENSGALG00010007994)	CARMIL1 (ENSGALG00010007973)	SCGN (ENSGALG00010007953)	ENSGALG00010009189	PARD6G (ENSGALG00010007945)	BLOC1S4 (ENSGALG00010007943)	GLIPR2 (ENSGALG00010007940) #22	IFI6 (ENSGALG00010007911)	ALG2 (ENSGALG00010007603)	SEC61B (ENSGALG00010007593)	NR4A3 (ENSGALG00010008346)	STX17 (ENSGALG00010008334)	ERP44 (ENSGALG00010008319)	INVS (ENSGALG00010008314)	TEX10 (ENSGALG00010008303)	ENSGALG00010008298	C2H9ORF30 (ENSGALG00010008255)	AHRR (ENSGALG00010008251)	ENSGALG00010008223	PDCD6 (ENSGALG00010008196)	EXOC3 (ENSGALG00010008189)	ENSGALG00010008175
Japanese quail	MODERN SPECIES	11	PTGR3 (ENSCJPG00005007262)	TSHZ1 (ENSCJPG00005007261)	ZNF516 (ENSCJPG00005007179)	ZNF236 (ENSCJPG00005007161)	MBP (ENSCJPG00005007160)	GALR1 (ENSCJPG00005007144)	TDP2 (ENSCJPG00005007142)	ACOT13 (ENSCJPG00005007119)	C6orf62 (ENSCJPG00005007118)	ENSCJPG00005007117	RIPOR2 (ENSCJPG00005007113)	CARMIL1 (ENSCJPG00005007109)	SCGN (ENSCJPG00005007081)	PARD6G (ENSCJPG00005007080)	BLOC1S4 (ENSCJPG00005007079)	GLIPR2 (ENSCJPG00005007076) #22	ENSCJPG00005007073	ALG2 (ENSCJPG00005007072)	SEC61B (ENSCJPG00005007071)	NR4A3 (ENSCJPG00005007065)	STX17 (ENSCJPG00005007062)	ERP44 (ENSCJPG00005007061)	INVS (ENSCJPG00005007060)	TEX10 (ENSCJPG00005007059)	ENSCJPG00005007058	MSANTD3 (ENSCJPG00005007057)	AHRR (ENSCJPG00005007045)	ENSCJPG00005007044	PDCD6 (ENSCJPG00005007040)	EXOC3 (ENSCJPG00005007037)	ENSCJPG00005006992
African ostrich	MODERN SPECIES	172								ENSSCUG00000001141	SLC9A3 (ENSSCUG00000001123)	ENSSCUG00000001118	BRD9 (ENSSCUG00000001117)	TRIP13 (ENSSCUG00000001116)	TGFBR1 (ENSSCUG00000001114)	RECK (ENSSCUG00000001112) #21	ENSSCUG00000001110	GLIPR2 (ENSSCUG00000001108) #22	ENSSCUG00000001106
Australian saltwater crocodile	MODERN SPECIES		ADCY1 (ENSCPRG00005012310)	IGFBP1 (ENSCPRG00005012333)	IGFBP3 (ENSCPRG00005012380)	TNS3 (ENSCPRG00005012409)	ENSCPRG00005012478	NFX1 (ENSCPRG00005012491)	SLC12A7 (ENSCPRG00005012667)	TPPP (ENSCPRG00005013403)	CEP72 (ENSCPRG00005013408)	SLC9A3 (ENSCPRG00005013422)	ENSCPRG00005013429	TGFBR1 (ENSCPRG00005013433)	ENSCPRG00005013435	RECK (ENSCPRG00005013445) #21	ENSCPRG00005013453	GLIPR2 (ENSCPRG00005013455) #22	ENSCPRG00005013457	ALG2 (ENSCPRG00005013466)	SEC61B (ENSCPRG00005013467)	NR4A3 (ENSCPRG00005013476)	STX17 (ENSCPRG00005013486)	ERP44 (ENSCPRG00005013492)	INVS (ENSCPRG00005013524)	TEX10 (ENSCPRG00005013615)	MSANTD3 (ENSCPRG00005013789)	ENSCPRG00005013811	ENSCPRG00005013812	PDCD6 (ENSCPRG00005013819)	EXOC3 (ENSCPRG00005013824)	ENSCPRG00005013852	CAVIN4 (ENSCPRG00005013897)
Cryptodira	ANCESTRAL SPECIES	46	ENSGT00450000040303	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000164265.C	ENSGT01030000234613.a.a	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01100000263773	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00550000074817	ENSGT00950000183122.A	ENSGT00910000144277	ENSGT00390000008818	ENSGT01030000234531.C	ENSGT00940000162507.A	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01100000263773	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a.e
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00550000074817	ENSGT00950000183122.A	ENSGT00910000144277	ENSGT00390000008818	ENSGT01030000234531.C	ENSGT00940000162507.A	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01100000263773	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00530000068739	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a.e
Goode s thornscrub tortoise	MODERN SPECIES	11	FH (ENSGEVG00005000536)	SDHA (ENSGEVG00005000563)	CCDC127 (ENSGEVG00005000609)	LRRC14B (ENSGEVG00005000630)	PLEKHG4B (ENSGEVG00005000651)	SLC9A3 (ENSGEVG00005000687)	CEP72 (ENSGEVG00005000752)	TPPP (ENSGEVG00005000776)	ENSGEVG00005000790	BRD9 (ENSGEVG00005000820)	TRIP13 (ENSGEVG00005000866)	ENSGEVG00005000897	TGFBR1 (ENSGEVG00005000944)	RECK (ENSGEVG00005001009) #21	ENSGEVG00005001069	GLIPR2 (ENSGEVG00005001080) #22	ENSGEVG00005001095	ALG2 (ENSGEVG00005001106)	SEC61B (ENSGEVG00005001115)	NR4A3 (ENSGEVG00005001134)	STX17 (ENSGEVG00005001160)	ERP44 (ENSGEVG00005001181)	INVS (ENSGEVG00005001220)	TEX10 (ENSGEVG00005001259)	ENSGEVG00005001292	MSANTD3 (ENSGEVG00005001340)	ENSGEVG00005001347	ENSGEVG00005001364	ENSGEVG00005001384	PDCD6 (ENSGEVG00005001415)	EXOC3 (ENSGEVG00005001436)
Abingdon island giant tortoise	MODERN SPECIES	1219													TGFBR1 (ENSCABG00000015559)	RECK (ENSCABG00000015563) #21	ENSCABG00000015566	GLIPR2 (ENSCABG00000015567) #22	ENSCABG00000015568	ALG2 (ENSCABG00000015570)	SEC61B (ENSCABG00000015572)	NR4A3 (ENSCABG00000015574)	ENSCABG00000015576	STX17 (ENSCABG00000015578)	ERP44 (ENSCABG00000015579)	INVS (ENSCABG00000015587)
Emydidae	ANCESTRAL SPECIES	69	ENSGT00550000074817	ENSGT00950000183122.A	ENSGT00910000144277	ENSGT00390000008818	ENSGT01030000234531.C	ENSGT00940000162507.A	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00530000067915	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a
Three-toed box turtle	MODERN SPECIES	104					LRRC14B (ENSTMTG00000011327)	PLEKHG4B (ENSTMTG00000011339)	SLC9A3 (ENSTMTG00000011384)	TPPP (ENSTMTG00000011429)	ENSTMTG00000011434	BRD9 (ENSTMTG00000011451)	TRIP13 (ENSTMTG00000011515)	ENSTMTG00000011598	ENSTMTG00000011610	RECK (ENSTMTG00000011660) #21	ENSTMTG00000011747	GLIPR2 (ENSTMTG00000011770) #22	ENSTMTG00000011784	ALG2 (ENSTMTG00000011797)	SEC61B (ENSTMTG00000011804)	NR4A3 (ENSTMTG00000011814)	STX17 (ENSTMTG00000011840)	ERP44 (ENSTMTG00000011852)	INVS (ENSTMTG00000011876)	TEX10 (ENSTMTG00000011962)
painted turtle	MODERN SPECIES	2368												ENSCPBG00000001039	TGFBR1 (ENSCPBG00000001028)	RECK (ENSCPBG00000000991) #21	ENSCPBG00000000951	GLIPR2 (ENSCPBG00000000870) #22	ENSCPBG00000000839	ALG2 (ENSCPBG00000000831)	ENSCPBG00000000813	NR4A3 (ENSCPBG00000000766)	STX17 (ENSCPBG00000000743)	ERP44 (ENSCPBG00000000730)	INVS (ENSCPBG00000000656)	TEX10 (ENSCPBG00000000605)	GABBR2 (ENSCPBG00000000568)	GALNT12 (ENSCPBG00000000429)	ANKS6 (ENSCPBG00000000336)	ENSCPBG00000000264	IRX1 (ENSCPBG00000000245)	PLLP (ENSCPBG00000000232)	ARL2BP (ENSCPBG00000000201)
Chinese turtle	MODERN SPECIES	279	EXOC3 (ENSPSIG00000007282)	ENSPSIG00000007172	ENSPSIG00000007107	SLC9A3 (ENSPSIG00000004889)	CEP72 (ENSPSIG00000004678)	TPPP (ENSPSIG00000004148)	ENSPSIG00000004020	BRD9 (ENSPSIG00000003875)	TRIP13 (ENSPSIG00000003291)	ENSPSIG00000001221	ENSPSIG00000018207	TGFBR1 (ENSPSIG00000018059)	ENSPSIG00000018032	RECK (ENSPSIG00000017558) #21	ENSPSIG00000017139	GLIPR2 (ENSPSIG00000017023) #22	TEX10 (ENSPSIG00000015500)	INVS (ENSPSIG00000013062)	ERP44 (ENSPSIG00000012987)	STX17 (ENSPSIG00000012286)	NR4A3 (ENSPSIG00000012281)	ENSPSIG00000001216	ALG2 (ENSPSIG00000001206)	ENSPSIG00000012236	FRRS1L (ENSPSIG00000012203)	EPB41L4B (ENSPSIG00000011694)
Lepidosauria	ANCESTRAL SPECIES	71	ENSGT00550000074817	ENSGT00950000183122.A	ENSGT00910000144277	ENSGT00390000008818	ENSGT01030000234531.C	ENSGT00940000162507.A	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01100000263773	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT00960000188468	ENSGT01030000234613.a.a
Episquamata	ANCESTRAL SPECIES	5	ENSGT00550000074817	ENSGT00950000183122.A	ENSGT00910000144277	ENSGT00390000008818	ENSGT01030000234531.C	ENSGT00940000162507.A	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT00960000188468	ENSGT01030000234613.a.a	ENSGT00530000063608.A	ENSGT00940000155909	ENSGT00940000156004
Laterata	ANCESTRAL SPECIES	49	ENSGT00550000074817	ENSGT00950000183122.A	ENSGT00910000144277	ENSGT00390000008818	ENSGT01030000234531.C	ENSGT00940000162507.A	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00390000007901	ENSGT00940000154486.a.b	ENSGT01030000234977	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00530000063608.A	ENSGT00940000155909	ENSGT00940000156004	ENSGT00990000212626
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000016354	LRRC14B (ENSPMRG00000016352)	ENSPMRG00000016344	PLEKHG4B (ENSPMRG00000016335)	SLC9A3 (ENSPMRG00000016309)	CEP72 (ENSPMRG00000016297)	TPPP (ENSPMRG00000016291)	ENSPMRG00000016285	BRD9 (ENSPMRG00000016272)	TRIP13 (ENSPMRG00000016264)	ENSPMRG00000016259	ENSPMRG00000016254	TGFBR1 (ENSPMRG00000016248)	ENSPMRG00000016239	RECK (ENSPMRG00000016032) #21	GLIPR2 (ENSPMRG00000015981) #22	ALG2 (ENSPMRG00000015975)	ENSPMRG00000015969	ENSPMRG00000015962	ENSPMRG00000015958	NR4A3 (ENSPMRG00000015952)	ERP44 (ENSPMRG00000015938)	ENSPMRG00000015932	INVS (ENSPMRG00000015917)	TEX10 (ENSPMRG00000015907)	MSANTD3 (ENSPMRG00000015901)	ENSPMRG00000015889	PDCD6 (ENSPMRG00000015858)	EXOC3 (ENSPMRG00000015840)	COBL (ENSPMRG00000015805)	GRB10 (ENSPMRG00000015539)
Argentine black and white tegu	MODERN SPECIES	5	CHMP5 (ENSSMRG00000010034)	FH (ENSSMRG00000010033)	SDHA (ENSSMRG00000010026)	CCDC127 (ENSSMRG00000010024)	LRRC14B (ENSSMRG00000010023)	PLEKHG4B (ENSSMRG00000010018)	SLC9A3 (ENSSMRG00000010012)	CEP72 (ENSSMRG00000010003)	TPPP (ENSSMRG00000009999)	ENSSMRG00000009996	BRD9 (ENSSMRG00000009991)	TRIP13 (ENSSMRG00000009986)	ENSSMRG00000009982	TGFBR1 (ENSSMRG00000009981)	RECK (ENSSMRG00000009977) #21	GLIPR2 (ENSSMRG00000009953) #22	ALG2 (ENSSMRG00000009952)	SEC61B (ENSSMRG00000009950)	NR4A3 (ENSSMRG00000009945)	ENSSMRG00000009940	ERP44 (ENSSMRG00000009935)	INVS (ENSSMRG00000009932)	TEX10 (ENSSMRG00000009931)	ENSSMRG00000009930	MSANTD3 (ENSSMRG00000009929)	ENSSMRG00000009921	ENSSMRG00000009920	PDCD6 (ENSSMRG00000009919)	EXOC3 (ENSSMRG00000009917)	COBL (ENSSMRG00000009914)	GRB10 (ENSSMRG00000009908)
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00390000012151	ENSGT00450000040296	ENSGT00550000074817	ENSGT00950000183122.A	ENSGT00910000144277	ENSGT00390000008818	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00390000007901	ENSGT00940000160982	ENSGT00960000188468	ENSGT01030000234613.a.a	ENSGT00530000063608.A	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000156782.c	ENSGT00940000165844
Elapidae	ANCESTRAL SPECIES	5	ENSGT00390000014303	ENSGT00390000008818	ENSGT00910000144277	ENSGT00950000183122.A	ENSGT00550000074817	ENSGT00450000040296	ENSGT00390000012151	ENSGT00940000157051	ENSGT00940000159043	ENSGT00390000001667	ENSGT00940000158616	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00390000007901	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00530000063608.A	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000156782.c	ENSGT00940000165844	ENSGT00520000055647.a.eb
Indian cobra	MODERN SPECIES	337	INO80C (ENSNNAG00000008549)	CCDC127 (ENSNNAG00000008528)	SDHA (ENSNNAG00000008248)	CHMP5 (ENSNNAG00000008181)	BAG1 (ENSNNAG00000008101)	ENSNNAG00000008057	MOCOS (ENSNNAG00000007523)	FRRS1L (ENSNNAG00000007455)	TMEM245 (ENSNNAG00000006924)	SLC9A3 (ENSNNAG00000006815)	ENSNNAG00000006786	BRD9 (ENSNNAG00000006643)	TRIP13 (ENSNNAG00000006607)	TGFBR1 (ENSNNAG00000006245)	RECK (ENSNNAG00000006147) #21	GLIPR2 (ENSNNAG00000006129) #22	ALG2 (ENSNNAG00000006116)	SEC61B (ENSNNAG00000006107)	NR4A3 (ENSNNAG00000006079)	ERP44 (ENSNNAG00000006046)	INVS (ENSNNAG00000006028)	TEX10 (ENSNNAG00000005960)	MSANTD3 (ENSNNAG00000005940)	PDCD6 (ENSNNAG00000005925)	EXOC3 (ENSNNAG00000005885)	GRB10 (ENSNNAG00000005868)	DDC (ENSNNAG00000005078)	IKZF1 (ENSNNAG00000004989)	ENSNNAG00000004979	ENSNNAG00000004960	ENSNNAG00000004930
Elapidae_a	ANCESTRAL SPECIES	40	ENSGT00390000014303	ENSGT00390000008818	ENSGT00910000144277	ENSGT00950000183122.A	ENSGT00550000074817	ENSGT00450000040296	ENSGT00390000012151	ENSGT00940000157051	ENSGT00940000159043	ENSGT00390000001667	ENSGT00940000158616	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00390000007901	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00530000063608.A	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000156782.c	ENSGT00940000165844	ENSGT00520000055647.a.eb
Acanthophiinae	ANCESTRAL SPECIES	41	ENSGT00390000014303	ENSGT00390000008818	ENSGT00910000144277	ENSGT00950000183122.A	ENSGT00550000074817	ENSGT00450000040296	ENSGT00390000012151	ENSGT00940000157051	ENSGT00940000159043	ENSGT00390000001667	ENSGT00940000158616	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000156394	ENSGT00390000018540 #21	ENSGT00390000020276.rb #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00390000007901	ENSGT00940000160982	ENSGT01030000234613.a.a	ENSGT00530000063608.A	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000156782.c	ENSGT00940000165844	ENSGT00520000055647.a.eb
Eastern brown snake	MODERN SPECIES	18												BRD9 (ENSPTXG00000009345)	TRIP13 (ENSPTXG00000009344)	TGFBR1 (ENSPTXG00000009342)	RECK (ENSPTXG00000009341) #21	GLIPR2 (ENSPTXG00000009340) #22	ALG2 (ENSPTXG00000009339)	SEC61B (ENSPTXG00000009338)	NR4A3 (ENSPTXG00000009337)	ENSPTXG00000009336	ERP44 (ENSPTXG00000009333)	INVS (ENSPTXG00000009332)	TEX10 (ENSPTXG00000009321)	MSANTD3 (ENSPTXG00000009319)	PDCD6 (ENSPTXG00000009318)	EXOC3 (ENSPTXG00000009314)	GRB10 (ENSPTXG00000009308)	DDC (ENSPTXG00000009307)	IKZF1 (ENSPTXG00000009305)	ENSPTXG00000009303	ZPBP (ENSPTXG00000009266)
Mainland tiger snake	MODERN SPECIES	99	FH (ENSNSUG00000005352)	CHMP5 (ENSNSUG00000005353)	ENSNSUG00000005354	ENSNSUG00000005492	MOCOS (ENSNSUG00000005496)	FRRS1L (ENSNSUG00000005564)	ENSNSUG00000005565	ENSNSUG00000005566	SLC9A3 (ENSNSUG00000005569)	ENSNSUG00000005572	ENSNSUG00000005583	TRIP13 (ENSNSUG00000005584)	TGFBR1 (ENSNSUG00000005590)	RECK (ENSNSUG00000005597) #21	ENSNSUG00000005598	GLIPR2 (ENSNSUG00000005600) #22	ALG2 (ENSNSUG00000005601)	SEC61B (ENSNSUG00000005603)	NR4A3 (ENSNSUG00000005605)	ERP44 (ENSNSUG00000005717)	INVS (ENSNSUG00000005723)	ENSNSUG00000005724	ENSNSUG00000005725	MSANTD3 (ENSNSUG00000005726)	PDCD6 (ENSNSUG00000005727)	EXOC3 (ENSNSUG00000005728)	ENSNSUG00000005731	GRB10 (ENSNSUG00000005732)	DDC (ENSNSUG00000005736)	IKZF1 (ENSNSUG00000005737)	ENSNSUG00000005738
Blue-lipped sea krait	MODERN SPECIES	9148																GLIPR2 (ENSLLTG00000010869) #22
Lizard	MODERN SPECIES	5	CCDC127 (ENSACAG00000045163)	PLEKHG4B (ENSACAG00000009525)	ENSACAG00000038652	SLC9A3 (ENSACAG00000009460)	ENSACAG00000038400	CEP72 (ENSACAG00000029204)	TPPP (ENSACAG00000009421)	ENSACAG00000040247	BRD9 (ENSACAG00000009383)	TRIP13 (ENSACAG00000009324)	ENSACAG00000042485	ENSACAG00000009195	ENSACAG00000045201	ENSACAG00000009097 #21	ENSACAG00000038089	ENSACAG00000035824 #22	ALG2 (ENSACAG00000009062)	SEC61B (ENSACAG00000009059)	ENSACAG00000039485	NR4A3 (ENSACAG00000008988)	ENSACAG00000038009	ERP44 (ENSACAG00000008917)	INVS (ENSACAG00000008807)	ENSACAG00000035281	TEX10 (ENSACAG00000008774)	ENSACAG00000039446	ENSACAG00000008710	ENSACAG00000039681	ENSACAG00000025458	ENSACAG00000028522	ENSACAG00000042257
tuatara	MODERN SPECIES	1712	WDR37 (ENSSPUG00000002176)	ENSSPUG00000002164	GTPBP4 (ENSSPUG00000002153)	ENSSPUG00000002102	DIP2C (ENSSPUG00000001846)	ZMYND11 (ENSSPUG00000001782)	SLC9A3 (ENSSPUG00000001625)	CEP72 (ENSSPUG00000001589)	TPPP (ENSSPUG00000001578)	ENSSPUG00000001547	BRD9 (ENSSPUG00000001169)	TRIP13 (ENSSPUG00000001119)	ENSSPUG00000001086	TGFBR1 (ENSSPUG00000001079)	RECK (ENSSPUG00000000884) #21	GLIPR2 (ENSSPUG00000000863) #22	ALG2 (ENSSPUG00000000857)	ENSSPUG00000000853
Coelacanth	MODERN SPECIES	3615																GLIPR2 (ENSLACG00000001697) #22
Sarcopterygii	DUPLICATION
Sarcopterygii	ANCESTRAL SPECIES	74							ENSGT00390000016127	ENSGT00940000164889	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00510000050587	ENSGT00950000182888.b	ENSGT00940000154842.a.a	ENSGT00390000020276.qb.a ##22	ENSGT00940000154394.b.a.b	ENSGT00730000111343	ENSGT00620000089226	ENSGT00950000183177.a.a.a.b	ENSGT00940000164907	ENSGT00940000153464.A.a	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00390000012665	ENSGT01080000257442	ENSGT00940000164772	ENSGT00940000159652	ENSGT00940000156002.b
Tetrapoda	ANCESTRAL SPECIES	169		ENSGT00690000103350	ENSGT00940000154416.C.c.a.a	ENSGT00940000153306.A.a	ENSGT00390000016856	ENSGT00940000158016.d	ENSGT00940000165601	ENSGT00390000016127	ENSGT00940000164889	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00950000182888.b	ENSGT00940000154842.a.a	ENSGT00390000020276.qb.a ##22	ENSGT00730000111343
Anura	ANCESTRAL SPECIES	134	ENSGT00390000016856	ENSGT00940000158016.d	ENSGT00940000165601	ENSGT00390000016127	ENSGT00940000164889	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT01080000257442	ENSGT00680000100126	ENSGT00960000191971	ENSGT00510000050587	ENSGT00950000182888.b	ENSGT01010000227837	ENSGT00940000154842.a.a	ENSGT00390000020276.qb.a ##22
Frog	MODERN SPECIES	8	grin1 (ENSXETG00000022933)	ENSXETG00000043554	anapc2 (ENSXETG00000022932)	ssna1 (ENSXETG00000048167)	slc47a2 (ENSXETG00000022931)	tprn (ENSXETG00000036867)	tmem203 (ENSXETG00000042794)	ndor1 (ENSXETG00000022930)	RNF224 (ENSXETG00000048465)	ENSXETG00000049344	ENSXETG00000044669	RNF208 (ENSXETG00000044511)	tor4a (ENSXETG00000023451)	ddr2l (ENSXETG00000023452)	ENSXETG00000037243	ENSXETG00000023455 ##22	ENSXETG00000039242	ENSXETG00000045661	ccn1l (ENSXETG00000023462)	lmo4.2 (ENSXETG00000048335)	slc34a3 (ENSXETG00000023469)	ENSXETG00000042370	ENSXETG00000043525	tubb4b (ENSXETG00000023473)	pole3 (ENSXETG00000034705)	alad (ENSXETG00000023474)	ENSXETG00000046749	HDHD3 (ENSXETG00000048926)	bspry (ENSXETG00000046592)	ENSXETG00000042967	boc (ENSXETG00000003941)
Leishan spiny toad	MODERN SPECIES	12	ENSLLEG00000030275	ENSLLEG00000030283	TPRN (ENSLLEG00000030301)	TMEM203 (ENSLLEG00000030312)	NDOR1 (ENSLLEG00000030319)	ENSLLEG00000030344	ENSLLEG00000030354	RNF208 (ENSLLEG00000030362)	ENSLLEG00000030378	RNF224 (ENSLLEG00000030381)	TOR4A (ENSLLEG00000030387)	ENSLLEG00000030391	ENSLLEG00000030407	ENSLLEG00000030460 ##22	ENSLLEG00000030502 ##22	ENSLLEG00000008716 ##22	ENSLLEG00000008813	ENSLLEG00000008870	SLC34A3 (ENSLLEG00000008989)	ENSLLEG00000009103	ENSLLEG00000009144	ENSLLEG00000009181	ENSLLEG00000009220	ENSLLEG00000009263	ENSLLEG00000009353	ENSLLEG00000009393	ENSLLEG00000009435	ENSLLEG00000009466	ARAF (ENSLLEG00000009556)	ENSLLEG00000009931	ZNF618 (ENSLLEG00000009959)
Coelacanth	MODERN SPECIES	921								ANAPC2 (ENSLACG00000013919)	ssna1 (ENSLACG00000013871)	ENSLACG00000013559	TMEM203 (ENSLACG00000013475)	NDOR1 (ENSLACG00000013277)	RNF208 (ENSLACG00000013006)	TOR4A (ENSLACG00000011431)	ENSLACG00000007600	ENSLACG00000006448 ##22	TUBB4B (ENSLACG00000004932)	ENSLACG00000022624	ENSLACG00000003925	ENSLACG00000002268
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00390000020276.qb.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00390000020276.qb.b ##22
Anura	ANCESTRAL SPECIES																	ENSGT00390000020276.qb.b ##22
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	12	HDHD3 (ENSLLEG00000030267)	ENSLLEG00000030275	ENSLLEG00000030283	TPRN (ENSLLEG00000030301)	TMEM203 (ENSLLEG00000030312)	NDOR1 (ENSLLEG00000030319)	ENSLLEG00000030344	ENSLLEG00000030354	RNF208 (ENSLLEG00000030362)	ENSLLEG00000030378	RNF224 (ENSLLEG00000030381)	TOR4A (ENSLLEG00000030387)	ENSLLEG00000030391	ENSLLEG00000030407	ENSLLEG00000030460 ##22	ENSLLEG00000030502 ##22	ENSLLEG00000008716 ##22	ENSLLEG00000008813	ENSLLEG00000008870	SLC34A3 (ENSLLEG00000008989)	ENSLLEG00000009103	ENSLLEG00000009144	ENSLLEG00000009181	ENSLLEG00000009220	ENSLLEG00000009263	ENSLLEG00000009353	ENSLLEG00000009393	ENSLLEG00000009435	ENSLLEG00000009466	ARAF (ENSLLEG00000009556)	ENSLLEG00000009931
Leishan spiny toad	MODERN SPECIES	12	BSPRY (ENSLLEG00000030252)	HDHD3 (ENSLLEG00000030267)	ENSLLEG00000030275	ENSLLEG00000030283	TPRN (ENSLLEG00000030301)	TMEM203 (ENSLLEG00000030312)	NDOR1 (ENSLLEG00000030319)	ENSLLEG00000030344	ENSLLEG00000030354	RNF208 (ENSLLEG00000030362)	ENSLLEG00000030378	RNF224 (ENSLLEG00000030381)	TOR4A (ENSLLEG00000030387)	ENSLLEG00000030391	ENSLLEG00000030407	ENSLLEG00000030460 ##22	ENSLLEG00000030502 ##22	ENSLLEG00000008716 ##22	ENSLLEG00000008813	ENSLLEG00000008870	SLC34A3 (ENSLLEG00000008989)	ENSLLEG00000009103	ENSLLEG00000009144	ENSLLEG00000009181	ENSLLEG00000009220	ENSLLEG00000009263	ENSLLEG00000009353	ENSLLEG00000009393	ENSLLEG00000009435	ENSLLEG00000009466	ARAF (ENSLLEG00000009556)
Actinopterygii	ANCESTRAL SPECIES	111	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00390000012151	ENSGT00940000162768.A	ENSGT00940000157051	ENSGT00940000157888	ENSGT00940000158331	ENSGT00940000159043	ENSGT00390000001667	ENSGT00940000154732	ENSGT00390000014303	ENSGT00940000165492.a.a	ENSGT00390000020276 #22	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT01100000263773	ENSGT01090000260119	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00740000115874
Neopterygii	ANCESTRAL SPECIES	113	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00390000012151	ENSGT00940000162768.A	ENSGT00940000157051	ENSGT00940000157888	ENSGT00940000158331	ENSGT00940000159043	ENSGT00390000001667	ENSGT00940000154732	ENSGT00390000014303	ENSGT00940000165492.a.a	ENSGT00390000020276 #22	ENSGT00940000154394.a	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT01100000263773	ENSGT01090000260119	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00740000115874
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	660	crata (ENSLOCG00000002196)	ptpa (ENSLOCG00000002220)	ier5l (ENSLOCG00000017337)	ntmt1 (ENSLOCG00000002241)	asb6 (ENSLOCG00000002248)	ndor1 (ENSLOCG00000002261)	slc2a8 (ENSLOCG00000002280)	lcn15 (ENSLOCG00000002295)	ambp (ENSLOCG00000002312)	nrarpa (ENSLOCG00000017338)	EXD3 (ENSLOCG00000002330)	wdr31 (ENSLOCG00000002358)	ENSLOCG00000002366	tor4aa (ENSLOCG00000017339)	ENSLOCG00000002383	ENSLOCG00000002409 #22	ENSLOCG00000002421	ENSLOCG00000002441	ENSLOCG00000002458	ENSLOCG00000002479	lmo4a (ENSLOCG00000002487)	ccn1l1 (ENSLOCG00000002502)	pole3 (ENSLOCG00000002521)	lrsam1 (ENSLOCG00000002536)	ENSLOCG00000002555	ENSLOCG00000002569	ENSLOCG00000002585	ENSLOCG00000002597	slc27a4 (ENSLOCG00000002609)	ENSLOCG00000002619	mymk (ENSLOCG00000002633)
Spotted gar	MODERN SPECIES	649	GOLGA4 (ENSLOCG00000004917)	fignl1 (ENSLOCG00000018328)	ikzf1 (ENSLOCG00000004967)	SPATA48 (ENSLOCG00000004989)	vwc2 (ENSLOCG00000005007)	ENSLOCG00000005022	ZNF830 (ENSLOCG00000005038)	ENSLOCG00000005058	MOCOS (ENSLOCG00000005087)	PTPN3 (ENSLOCG00000005125)	EPB41L4B (ENSLOCG00000005168)	FRRS1L (ENSLOCG00000005200)	TMEM245 (ENSLOCG00000005216)	GALNT1 (ENSLOCG00000005248)	ino80c (ENSLOCG00000005268)	glipr2l (ENSLOCG00000005303) #22	alg2 (ENSLOCG00000005323)	sec61b (ENSLOCG00000005335)	nr4a3 (ENSLOCG00000005350)	stx17 (ENSLOCG00000005385)	erp44 (ENSLOCG00000005398)	invs (ENSLOCG00000005427)	tex10 (ENSLOCG00000005439)	ENSLOCG00000005455	ENSLOCG00000005498	fam83hb (ENSLOCG00000005513)	IQANK1 (ENSLOCG00000005531)	ENSLOCG00000005549	ENSLOCG00000005560	SETD2 (ENSLOCG00000005590)	ENSLOCG00000005615
Osteoglossocephalai	ANCESTRAL SPECIES	49	ENSGT00940000165669	ENSGT00390000009566	ENSGT00940000153772.B	ENSGT00940000158501	ENSGT00390000016384	ENSGT00940000166116	ENSGT00940000172233	ENSGT00940000157194	ENSGT00940000157936	ENSGT00940000153391.c.b.a	ENSGT01060000248575.C	ENSGT00950000183101.a.b.b.a.a	ENSGT00390000016526	ENSGT00940000155373	ENSGT00940000165492.a.a	ENSGT00390000020276 #22	ENSGT00940000154394.a	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00940000154394.b.a.b	ENSGT00620000089226	ENSGT00940000164907.b.a
Osteoglossiformes	ANCESTRAL SPECIES	20	ENSGT00940000156368.b	ENSGT00390000010606	ENSGT00940000158322.j	ENSGT00740000115874	ENSGT00950000182992.a.a	ENSGT00940000157688	ENSGT00930000151031	ENSGT01000000214440.A.b	ENSGT00950000183038.a.b.b.a	ENSGT00390000003561	ENSGT00550000075033	ENSGT00940000159043	ENSGT00390000001667	ENSGT00940000154732	ENSGT00390000014303	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00410000028469	ENSGT00940000155958	ENSGT00940000156737	ENSGT00950000183184.a.b	ENSGT00390000017837.b	ENSGT00390000007526	ENSGT00940000161184	ENSGT01060000248556.C	ENSGT00940000159418	ENSGT00940000159175	ENSGT00940000165993
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	36	SCAI (ENSPKIG00000023949)	golga1 (ENSPKIG00000023995)	ARPC5L (ENSPKIG00000024028)	rpl35 (ENSPKIG00000024042)	OLFML2A (ENSPKIG00000024055)	nr6a1a (ENSPKIG00000024074)	NR5A1 (ENSPKIG00000024096)	ADGRD2 (ENSPKIG00000024114)	NEK6 (ENSPKIG00000024170)	ENSPKIG00000024188	lhx2b (ENSPKIG00000024197)	ENSPKIG00000024237	CRB2 (ENSPKIG00000024247)	FPGS (ENSPKIG00000024268)	ENSPKIG00000024292	ENSPKIG00000024304 #22	tubb2b (ENSPKIG00000024313)	bcl2l16 (ENSPKIG00000024322)	ENSPKIG00000024343	ccn1l1 (ENSPKIG00000024360)	FKBP15 (ENSPKIG00000024375)	asb6 (ENSPKIG00000024415)	IER5L (ENSPKIG00000024424)	ptpa (ENSPKIG00000024438)	ADAMTS13 (ENSPKIG00000024467)	zgc:154046 (ENSPKIG00000024502)	ENSPKIG00000024531	ENSPKIG00000024542	ENSPKIG00000024549	ENSPKIG00000024565	ENSPKIG00000024575
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	557															ENSPKIG00000018761	ENSPKIG00000018741 #22	ENSPKIG00000018725	ENSPKIG00000018706	lmo4a (ENSPKIG00000018685)	ccn1l2 (ENSPKIG00000018660)	pole3 (ENSPKIG00000018647)	rpl12 (ENSPKIG00000018595)	lrsam1 (ENSPKIG00000018514)	ENSPKIG00000018450	ndor1 (ENSPKIG00000018380)	ntmt1 (ENSPKIG00000018336)
P. kingsleyae	MODERN SPECIES	324											ENSPKIG00000021398	fpgs (ENSPKIG00000021358)	cdk9 (ENSPKIG00000021317)	ENSPKIG00000021293	ENSPKIG00000021277	ENSPKIG00000021240 #22	CRB2 (ENSPKIG00000021213)	ENSPKIG00000021192	EGR3 (ENSPKIG00000021178)	ENSPKIG00000021166	ENSPKIG00000021143	wdr45 (ENSPKIG00000021102)	trim69 (ENSPKIG00000021074)	bmp1b (ENSPKIG00000021030)	npffr1l1 (ENSPKIG00000021008)	kansl3 (ENSPKIG00000020921)	ANTXR1 (ENSPKIG00000020856)	AAK1 (ENSPKIG00000020694)	anxa4 (ENSPKIG00000020622)	adrb3b (ENSPKIG00000020608)	ENSPKIG00000020596
P. kingsleyae	MODERN SPECIES	217	ptpn23a (ENSPKIG00000021974)	NEK11 (ENSPKIG00000022055)	CPNE4 (ENSPKIG00000022121)	ENSPKIG00000022181	TRNAU1AP (ENSPKIG00000022205)	STX12 (ENSPKIG00000022221)	ccn2b (ENSPKIG00000022246)	ENSPKIG00000022261	UBXN11 (ENSPKIG00000022285)	sh3bgrl3 (ENSPKIG00000022324)	CEP85 (ENSPKIG00000022345)	TMEM245 (ENSPKIG00000022402)	GALNT1 (ENSPKIG00000022519)	ino80c (ENSPKIG00000022582)	si:ch211-197h24.9 (ENSPKIG00000022594)	glipr2l (ENSPKIG00000022602) #22	ENSPKIG00000022623	TBRG4 (ENSPKIG00000022701)	steap4 (ENSPKIG00000022725)	ENSPKIG00000022746
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	21	ENSSFOG00015027511	ENSSFOG00015027501	ARPC5L (ENSSFOG00015025966)	ENSSFOG00015032130	OLFML2A (ENSSFOG00015033126)	nr6a1a (ENSSFOG00015014862)	ENSSFOG00015028783	NR5A1 (ENSSFOG00015029487)	psmb7 (ENSSFOG00015014825)	NEK6 (ENSSFOG00015014790)	lhx2b (ENSSFOG00015014773)	DENND1A (ENSSFOG00015014700)	CRB2 (ENSSFOG00015014561)	cdk9 (ENSSFOG00015014527)	fpgs (ENSSFOG00015014398)	ENSSFOG00015014320 #22	ENSSFOG00015015629	ENSSFOG00015014116	ENSSFOG00015014104	pole3 (ENSSFOG00015014086)	RPL12 (ENSSFOG00015029067)	lrsam1 (ENSSFOG00015013925)	ndor1 (ENSSFOG00015013852)	ntmt1 (ENSSFOG00015013835)	IER5L (ENSSFOG00015027039)	crata (ENSSFOG00015013784)	gpr107 (ENSSFOG00015013755)	NCS1 (ENSSFOG00015032851)	ENSSFOG00015013708	ENSSFOG00015013693	zbtb43 (ENSSFOG00015031491)
Asian bonytongue	MODERN SPECIES	9	TMEM67 (ENSSFOG00015009219)	rbm12ba (ENSSFOG00015009427)	ENSSFOG00015009435	tex10 (ENSSFOG00015009468)	invs (ENSSFOG00015009586)	erp44 (ENSSFOG00015009632)	stx17 (ENSSFOG00015009711)	nr4a3 (ENSSFOG00015009756)	sec61b (ENSSFOG00015025568)	alg2 (ENSSFOG00015009815)	FRRS1L (ENSSFOG00015028562)	ENSSFOG00015009845	TMEM245 (ENSSFOG00015009891)	GALNT1 (ENSSFOG00015009992)	ino80c (ENSSFOG00015027621)	glipr2l (ENSSFOG00015025614) #22	ENSSFOG00015010094	steap4 (ENSSFOG00015010116)	ENSSFOG00015010229	ENSSFOG00015010274	mindy3 (ENSSFOG00015010321)	ITGA8 (ENSSFOG00015010379)	FAM171A1 (ENSSFOG00015032227)	nmt2 (ENSSFOG00015010639)	ENSSFOG00015010659	acbd7 (ENSSFOG00015010686)	crot (ENSSFOG00015010723)	abcb4 (ENSSFOG00015010800)	ENSSFOG00015010897	rundc3b (ENSSFOG00015010931)	slc25a40 (ENSSFOG00015010972)
Clupeocephala	ANCESTRAL SPECIES	292		ENSGT00940000167171	ENSGT00550000074961.a	ENSGT00940000153772.B	ENSGT00940000158501.d.b	ENSGT00390000016384.m	ENSGT00940000157194	ENSGT00940000153391.c.b.a.i	ENSGT00950000183101.a.b.b.a.a	ENSGT00390000016526	ENSGT00940000155373	ENSGT00940000157936	ENSGT00940000153391.c.b.a.j.a	ENSGT01060000248575.C	ENSGT00940000165492.a.a	ENSGT00390000020276 #22	ENSGT00940000154394.a	ENSGT00620000089226	ENSGT00940000164907.b.a	ENSGT00940000155151.a.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	15	ENSGT00990000204366	ENSGT00940000158633.b	ENSGT00940000155841.c.a	ENSGT01060000248544.b	ENSGT00940000165424.a.b.b	ENSGT00550000074961.a	ENSGT00940000153772.B	ENSGT00390000016384.m	ENSGT00940000157194	ENSGT00940000157936	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000161534	ENSGT01060000248575.C	ENSGT00940000158540	ENSGT00950000183101.a.b.b.a.a	ENSGT00390000020276 #22	ENSGT00940000154394.a	ENSGT00620000089226	ENSGT00940000164907.b.a	ENSGT00940000155151.a.a.a	ENSGT00530000064286	ENSGT00940000167390	ENSGT01100000263542.B.b.a.b	ENSGT00390000012665	ENSGT01080000257442	ENSGT00940000166440	ENSGT00940000156002.a.b	ENSGT00940000155275.c.b.b	ENSGT00940000155422.bb	ENSGT00940000159838	ENSGT00530000063843.a
Acanthomorphata	ANCESTRAL SPECIES	46			ENSGT00940000158633.b	ENSGT00940000155841.c.a	ENSGT01060000248544.b	ENSGT00940000167171	ENSGT00550000074961.a	ENSGT00940000153772.B	ENSGT00390000016384.m	ENSGT00940000157194	ENSGT00940000157936	ENSGT00940000153391.c.b.a.j.a	ENSGT01060000248575.C	ENSGT00940000158540	ENSGT00950000183101.a.b.b.a.a	ENSGT00390000020276 #22	ENSGT00940000154394.a	ENSGT00620000089226	ENSGT00940000164907.b.a	ENSGT00940000155151.a.a.a	ENSGT00530000064286	ENSGT00940000167390	ENSGT01100000263542.B.b.a.b	ENSGT00390000012665	ENSGT01080000257442	ENSGT00940000166440	ENSGT00940000156002.a.b	ENSGT00940000155275.c.b.b	ENSGT00940000155422.bb	ENSGT00940000159838	ENSGT00530000063843.a
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000158322.i	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Pinecone sodierfish	MODERN SPECIES	7	upp1 (ENSMMDG00005021655)	ENSMMDG00005021662	HEY1 (ENSMMDG00005021781)	fabp4b (ENSMMDG00005021784)	fam8a1b (ENSMMDG00005021785)	ATXN1 (ENSMMDG00005021788)	ITGA8 (ENSMMDG00005021796)	mindy3 (ENSMMDG00005021854)	ENSMMDG00005021860	steap4 (ENSMMDG00005021862)	ENSMMDG00005021867	ENSMMDG00005021882	ENSMMDG00005021935	ENSMMDG00005021990	steap4 (ENSMMDG00005022009)	glipr2l (ENSMMDG00005022100) #22	ENSMMDG00005022103	TBRG4 (ENSMMDG00005022109)	ATP4A (ENSMMDG00005022115)	DENND3 (ENSMMDG00005022127)	SLC45A4 (ENSMMDG00005022144)	GPR20 (ENSMMDG00005022149)	dgat1b (ENSMMDG00005022154)	ENSMMDG00005022156	ino80c (ENSMMDG00005001198)	GALNT1 (ENSMMDG00005001310)	TMEM245 (ENSMMDG00005002245)	ENSMMDG00005003472	FRRS1L (ENSMMDG00005003476)	alg2 (ENSMMDG00005003478)	sec61b (ENSMMDG00005003493)
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000158322.i	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Tiger tail seahorse	MODERN SPECIES	215	ENSHCOG00000015022	ENSHCOG00000014975	rbm12bb (ENSHCOG00000014952)	ENSHCOG00000014946	upp1 (ENSHCOG00000014928)	stmn2b (ENSHCOG00000014905)	HEY1 (ENSHCOG00000014864)	fabp4b (ENSHCOG00000014846)	fam8a1b (ENSHCOG00000014840)	ATXN1 (ENSHCOG00000014835)	ITGA8 (ENSHCOG00000014789)	mindy3 (ENSHCOG00000014681)	ENSHCOG00000014677	steap4 (ENSHCOG00000014665)	steap4 (ENSHCOG00000014588)	glipr2l (ENSHCOG00000014580) #22	ENSHCOG00000014570	TBRG4 (ENSHCOG00000014561)	ENSHCOG00000014558	SLC45A4 (ENSHCOG00000014548)	GPR20 (ENSHCOG00000014524)	dgat1b (ENSHCOG00000014502)
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000158322.i	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	214					TACR1 (ENSKMAG00000010517)	zgc:110329 (ENSKMAG00000010540)	SLC4A5 (ENSKMAG00000010581)	ogfod2 (ENSKMAG00000010620)	zgc:113436 (ENSKMAG00000010644)	abcb9 (ENSKMAG00000010667)	vps37ba (ENSKMAG00000010685)	ppp3cca (ENSKMAG00000010723)	adam28 (ENSKMAG00000010815)	ENSKMAG00000010855	tcima (ENSKMAG00000010866)	ENSKMAG00000010877 #22	tubb2b (ENSKMAG00000010899)	ENSKMAG00000010925	ENSKMAG00000010937	ccn1l2 (ENSKMAG00000011033)	FKBP15 (ENSKMAG00000011215)	fgf17 (ENSKMAG00000011238)	entpd2a.1 (ENSKMAG00000011267)	nelfb (ENSKMAG00000011308)	ENSKMAG00000011375	ENSKMAG00000011391
Mangrove rivulus	MODERN SPECIES	81											ENSKMAG00000005884	ENSKMAG00000005874	ENSKMAG00000005859	ENSKMAG00000005846	steap4 (ENSKMAG00000005820)	glipr2l (ENSKMAG00000005792) #22	ENSKMAG00000005765	TBRG4 (ENSKMAG00000005739)	DENND3 (ENSKMAG00000005678)	SLC45A4 (ENSKMAG00000005651)	GPR20 (ENSKMAG00000005633)	dgat1b (ENSKMAG00000005574)	ENSKMAG00000005493	SCRT1 (ENSKMAG00000005484)	ino80c (ENSKMAG00000005456)	GALNT1 (ENSKMAG00000005399)	TMEM245 (ENSKMAG00000005289)	FRRS1L (ENSKMAG00000005259)	ENSKMAG00000005230	sec61b (ENSKMAG00000005216)	alg2 (ENSKMAG00000005180)
Turquoise killifish	DUPLICATION
Turquoise killifish	MODERN SPECIES	184															ENSNFUG00015017596	ENSNFUG00015017615 #22	ENSNFUG00015017654
Turquoise killifish	MODERN SPECIES	1614					ENSNFUG00015008396	ENSNFUG00015008389	ENSNFUG00015008387	CABZ01072585.1 (ENSNFUG00015017515)	ENSNFUG00015017510	mindy3 (ENSNFUG00015017470)	OLA.3322 (ENSNFUG00015017440)	ENSNFUG00015017429	Nfu_g_1_001221 (ENSNFUG00015017418)	ENSNFUG00015017407	steap4 (ENSNFUG00015017177)	GLIPR2L (ENSNFUG00015017157) #22	ENSNFUG00015017147	RUNDC3B (ENSNFUG00015016790)	abcb4 (ENSNFUG00015016384)	CROT (ENSNFUG00015016326)	acbd7 (ENSNFUG00015015813)	RPP38 (ENSNFUG00015015767)	NMT2 (ENSNFUG00015015721)	FAM171A1 (ENSNFUG00015015689)	ENSNFUG00015015640	ENSNFUG00015015061	ENSNFUG00015015019	TMEM200B (ENSNFUG00015015008)	ENSNFUG00015015001	ENSNFUG00015014901	OLA.22492 (ENSNFUG00015014884)
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
NAME_4	ANCESTRAL SPECIES	1	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01030000237748	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b
Mummichog	MODERN SPECIES	292												ENSFHEG00000015046	ENSFHEG00000015021	ENSFHEG00000015001	steap4 (ENSFHEG00000014996)	glipr2l (ENSFHEG00000014990) #22	ENSFHEG00000014965	TBRG4 (ENSFHEG00000014946)	DENND3 (ENSFHEG00000014932)	SLC45A4 (ENSFHEG00000014891)	dgat1b (ENSFHEG00000014868)	ENSFHEG00000014827	SCRT1 (ENSFHEG00000014820)	ENSFHEG00000000357	ino80c (ENSFHEG00000014801)	GALNT1 (ENSFHEG00000014794)	TMEM245 (ENSFHEG00000014765)	FRRS1L (ENSFHEG00000014619)	alg2 (ENSFHEG00000014605)	sec61b (ENSFHEG00000014561)
Sheepshead minnow	MODERN SPECIES	114	upp1 (ENSCVAG00000011036)	stmn2b (ENSCVAG00000011029)	HEY1 (ENSCVAG00000011007)	fam8a1b (ENSCVAG00000010989)	fabp4b (ENSCVAG00000010949)	ATXN1 (ENSCVAG00000010945)	ITGA8 (ENSCVAG00000010937)	mindy3 (ENSCVAG00000010690)	ENSCVAG00000010615	steap4 (ENSCVAG00000000992)	ENSCVAG00000000289	ENSCVAG00000010471	ENSCVAG00000010051	ENSCVAG00000010017	steap4 (ENSCVAG00000009911)	glipr2l (ENSCVAG00000009900) #22	ENSCVAG00000009889	TBRG4 (ENSCVAG00000009862)	DENND3 (ENSCVAG00000009851)	SLC45A4 (ENSCVAG00000009659)	ENSCVAG00000009644	dgat1b (ENSCVAG00000009576)	SCRT1 (ENSCVAG00000009561)	ino80c (ENSCVAG00000009552)	GALNT1 (ENSCVAG00000009543)	TMEM245 (ENSCVAG00000009489)	FRRS1L (ENSCVAG00000009416)	alg2 (ENSCVAG00000009392)	sec61b (ENSCVAG00000000880)	nr4a3 (ENSCVAG00000009361)	stx17 (ENSCVAG00000009350)
Poeciliinae	ANCESTRAL SPECIES		ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b.i	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a.d.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a.c	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Poecilia	ANCESTRAL SPECIES		ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b.i	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a.d.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a.c.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b
NAME_6	ANCESTRAL SPECIES	36											ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT00390000008042.B.r.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a.c.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b
Sailfin molly	MODERN SPECIES	11											steap4 (ENSPLAG00000009564)	ENSPLAG00000009626	ENSPLAG00000009640	ENSPLAG00000009702	steap4 (ENSPLAG00000009729)	glipr2l (ENSPLAG00000000219) #22	ENSPLAG00000009762	TBRG4 (ENSPLAG00000009771)	DENND3 (ENSPLAG00000009782)	SLC45A4 (ENSPLAG00000009797)	GPR20 (ENSPLAG00000009856)	dgat1b (ENSPLAG00000009865)	SCRT1 (ENSPLAG00000009876)	ino80c (ENSPLAG00000009882)	GALNT1 (ENSPLAG00000009951)	TMEM245 (ENSPLAG00000010020)	FRRS1L (ENSPLAG00000010042)	alg2 (ENSPLAG00000010053)	sec61b (ENSPLAG00000010062)	nr4a3 (ENSPLAG00000010127)	stx17 (ENSPLAG00000010134)
Amazon molly	MODERN SPECIES	328											steap4 (ENSPFOG00000018027)	ENSPFOG00000018024	ENSPFOG00000018011	ENSPFOG00000018004	steap4 (ENSPFOG00000017956)	glipr2l (ENSPFOG00000017944) #22	ENSPFOG00000017937	TBRG4 (ENSPFOG00000017918)	DENND3 (ENSPFOG00000017821)	SLC45A4 (ENSPFOG00000017796)	GPR20 (ENSPFOG00000017772)	dgat1b (ENSPFOG00000017725)	SCRT1 (ENSPFOG00000017719)	ino80c (ENSPFOG00000017709)	GALNT1 (ENSPFOG00000017686)	TMEM245 (ENSPFOG00000017604)	FRRS1L (ENSPFOG00000017578)	alg2 (ENSPFOG00000017567)	sec61b (ENSPFOG00000017564)	nr4a3 (ENSPFOG00000017538)	stx17 (ENSPFOG00000017522)
Guppy	MODERN SPECIES	446	fam8a1b (ENSPREG00000020323)	ATXN1 (ENSPREG00000020308)	ITGA8 (ENSPREG00000019979)	mindy3 (ENSPREG00000019880)	ENSPREG00000019856	ENSPREG00000019753	steap4 (ENSPREG00000019734)	ENSPREG00000019722	ENSPREG00000019636	ENSPREG00000019487	ENSPREG00000019447	ENSPREG00000019432	ENSPREG00000019392	ENSPREG00000019346	steap4 (ENSPREG00000019257)	glipr2l (ENSPREG00000019236) #22	ENSPREG00000019222	TBRG4 (ENSPREG00000019178)	DENND3 (ENSPREG00000019116)	SLC45A4 (ENSPREG00000019069)	GPR20 (ENSPREG00000019042)	dgat1b (ENSPREG00000019007)	SCRT1 (ENSPREG00000018985)	ino80c (ENSPREG00000018970)	ENSPREG00000018944	TMEM245 (ENSPREG00000018856)	FRRS1L (ENSPREG00000018789)	alg2 (ENSPREG00000018776)	ENSPREG00000018767	nr4a3 (ENSPREG00000018748)	ENSPREG00000018735
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	2	mrpl41 (ENSXMAG00000019576)	dph7 (ENSXMAG00000028457)	sh3glb2a (ENSXMAG00000005038)	ENSXMAG00000028923	ENSXMAG00000020951	PPP6C (ENSXMAG00000002940)	golga1 (ENSXMAG00000002925)	rpl35 (ENSXMAG00000002921)	ENSXMAG00000027238	olfml2a (ENSXMAG00000026342)	nr6a1a (ENSXMAG00000009061)	nr5a1a (ENSXMAG00000023834)	ADGRD2 (ENSXMAG00000004769)	lhx2b (ENSXMAG00000003908)	ENSXMAG00000003917	ENSXMAG00000003934 #22	tubb2b (ENSXMAG00000003936)	ENSXMAG00000023710	FKBP15 (ENSXMAG00000003947)	fgf17 (ENSXMAG00000003974)	entpd2a.1 (ENSXMAG00000003981)	nelfb (ENSXMAG00000003997)	ENSXMAG00000019563	arrdc1a (ENSXMAG00000004012)	ENSXMAG00000028227	ENSXMAG00000024871	cacna1ba (ENSXMAG00000004029)	man1b1b (ENSXMAG00000004209)	dpp7 (ENSXMAG00000004228)	noxa1 (ENSXMAG00000029661)	WHRN (ENSXMAG00000029580)
Platyfish	MODERN SPECIES	17	HEY1 (ENSXMAG00000014241)	ENSXMAG00000014247	fam8a1b (ENSXMAG00000026154)	ATXN1 (ENSXMAG00000014270)	ITGA8 (ENSXMAG00000014274)	mindy3 (ENSXMAG00000014375)	ENSXMAG00000025877	ENSXMAG00000026284	steap4 (ENSXMAG00000014397)	ENSXMAG00000025691	ENSXMAG00000023957	ENSXMAG00000030018	ENSXMAG00000028644	steap4 (ENSXMAG00000024455)	ENSXMAG00000026561	glipr2l (ENSXMAG00000014422) #22	ENSXMAG00000021824	TBRG4 (ENSXMAG00000014438)	DENND3 (ENSXMAG00000014446)	SLC45A4 (ENSXMAG00000014455)	ENSXMAG00000014474	dgat1b (ENSXMAG00000014477)	SCRT1 (ENSXMAG00000027885)	ino80c (ENSXMAG00000014496)	ENSXMAG00000029943	GALNT1 (ENSXMAG00000013208)	TMEM245 (ENSXMAG00000013207)	FRRS1L (ENSXMAG00000029956)	ENSXMAG00000025841	alg2 (ENSXMAG00000013195)	sec61b (ENSXMAG00000028520)
Oryzias	ANCESTRAL SPECIES	7	ENSGT00950000183012.A.a.c.b	ENSGT00940000166302	ENSGT00940000156716	ENSGT00390000003458	ENSGT00940000156888	ENSGT00940000159875	ENSGT00390000000134.b.a	ENSGT00940000155874.a	ENSGT00950000183197.b.a.a	ENSGT00940000165531.b.a	ENSGT00950000182815.a.a.b.h	ENSGT00730000111181	ENSGT00940000155596.q	ENSGT00940000160987	ENSGT00940000159729	ENSGT00390000020276 #22	ENSGT00940000154394.a	ENSGT00530000064286	ENSGT00390000012665
Oryzias_a	DUPLICATION
Oryzias_a	DUPLICATION
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00940000156716	ENSGT00390000003458	ENSGT00940000156888	ENSGT00940000159875	ENSGT00390000000134.b.a	ENSGT00940000155874.a	ENSGT00950000183197.b.a.a	ENSGT00940000165531.b.a	ENSGT00950000182815.a.a.b.h	ENSGT00730000111181	ENSGT00940000155596.q	ENSGT00940000160987	ENSGT00940000159729	ENSGT00390000020276.t.b #22	ENSGT00940000154394.a	ENSGT00390000020276.t.a #22	ENSGT00940000154394.b.a.a.a.a.a.b.d	ENSGT00530000064286	ENSGT00940000159717	ENSGT00940000154076.C.c	ENSGT00940000154076.C.d	ENSGT00390000014148.f	ENSGT00940000156231.o.b	ENSGT00940000159868.b	ENSGT00940000158016.c.b	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936
Chinese medaka	MODERN SPECIES	654																ENSOSIG00000001142 #22
Japanese Medaka HdrR	MODERN SPECIES	23	ENSORLG00000025110	ENSORLG00000016169	ENSORLG00000015190	sfrp1a (ENSORLG00000023004)	GOLGA7 (ENSORLG00000016186)	loxl2b (ENSORLG00000016197)	cyb561a3a (ENSORLG00000016210)	hdr (ENSORLG00000025227)	UNC5D (ENSORLG00000016270)	ENSORLG00000026598	tm2d2 (ENSORLG00000016282)	lman2lb (ENSORLG00000016292)	endog (ENSORLG00000016300)	ENSORLG00000016303	ENSORLG00000016307 #22	ENSORLG00000022378 #22	ENSORLG00000016308	FKBP15 (ENSORLG00000016322)	ENSORLG00000029387	ENSORLG00000010320	ENSORLG00000027510	ENSORLG00000022178	ENSORLG00000029089	ENSORLG00000021848	ENSORLG00000030565	ENSORLG00000016407	ENSORLG00000030177	ENSORLG00000016428	ENSORLG00000022012	ENSORLG00000016452	ENSORLG00000016462
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00950000183012.A.a.c.b	ENSGT00940000166302	ENSGT00940000156716	ENSGT00390000003458	ENSGT00940000156888	ENSGT00940000159875	ENSGT00390000000134.b.a	ENSGT00940000155874.a	ENSGT00950000183197.b.a.a	ENSGT00940000165531.b.a	ENSGT00950000182815.a.a.b.h	ENSGT00730000111181	ENSGT00940000155596.q	ENSGT00940000160987	ENSGT00940000159729	ENSGT00390000020276.t.b #22	ENSGT00940000154394.a	ENSGT00390000020276.t.a #22	ENSGT00940000154394.b.a.a.a.a.a.b.d	ENSGT00530000064286	ENSGT00940000159717	ENSGT00940000154076.C.c	ENSGT00940000154076.C.d	ENSGT00390000014148.f	ENSGT00940000156231.o.b	ENSGT00940000159868.b	ENSGT00940000158016.c.b	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000161534
Chinese medaka	MODERN SPECIES	223	vps37ba (ENSOSIG00000008916)	ppp3cca (ENSOSIG00000005759)	adam28 (ENSOSIG00000005197)	tcima (ENSOSIG00000005184)	ZMAT4 (ENSOSIG00000005178)	sfrp1a (ENSOSIG00000005175)	GOLGA7 (ENSOSIG00000005170)	loxl2b (ENSOSIG00000005166)	cyb561a3a (ENSOSIG00000005163)	hdr (ENSOSIG00000005131)	UNC5D (ENSOSIG00000005004)	tm2d2 (ENSOSIG00000004991)	lman2lb (ENSOSIG00000004988)	endog (ENSOSIG00000004982)	ENSOSIG00000004979	ENSOSIG00000004977 #22	tubb2b (ENSOSIG00000004915)	FKBP15 (ENSOSIG00000004648)	DNAH17 (ENSOSIG00000002522)	ENSOSIG00000002434	CEL (ENSOSIG00000002308)	ENSOSIG00000002263	GRIN1 (ENSOSIG00000000305)	ENSOSIG00000000220	lhx2b (ENSOSIG00000000152)	ENSOSIG00000000120	nr5a1a (ENSOSIG00000020203)	nr6a1a (ENSOSIG00000020151)	olfml2a (ENSOSIG00000020139)	ENSOSIG00000020136	rpl35 (ENSOSIG00000020130)
Japanese Medaka HdrR	MODERN SPECIES	23	tcima (ENSORLG00000029012)	ENSORLG00000025110	ENSORLG00000016169	ENSORLG00000015190	sfrp1a (ENSORLG00000023004)	GOLGA7 (ENSORLG00000016186)	loxl2b (ENSORLG00000016197)	cyb561a3a (ENSORLG00000016210)	hdr (ENSORLG00000025227)	UNC5D (ENSORLG00000016270)	ENSORLG00000026598	tm2d2 (ENSORLG00000016282)	lman2lb (ENSORLG00000016292)	endog (ENSORLG00000016300)	ENSORLG00000016303	ENSORLG00000016307 #22	ENSORLG00000022378 #22	ENSORLG00000016308	FKBP15 (ENSORLG00000016322)	ENSORLG00000029387	ENSORLG00000010320	ENSORLG00000027510	ENSORLG00000022178	ENSORLG00000029089	ENSORLG00000021848	ENSORLG00000030565	ENSORLG00000016407	ENSORLG00000030177	ENSORLG00000016428	ENSORLG00000022012	ENSORLG00000016452
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.g.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.h.b	ENSGT00390000008042.B.q	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.h.a	ENSGT00390000020276.u #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000220690
Japanese Medaka HdrR	MODERN SPECIES	7	fabp4b (ENSORLG00000008282)	ENSORLG00000027307	fam8a1b (ENSORLG00000023567)	ATXN1 (ENSORLG00000008288)	ITGA8 (ENSORLG00000008330)	ENSORLG00000024473	mindy3 (ENSORLG00000008352)	ENSORLG00000008362	ENSORLG00000029148	ENSORLG00000028543	ENSORLG00000008373	ENSORLG00000008394	ENSORLG00000027565	steap4 (ENSORLG00000008484)	ENSORLG00000030212	glipr2l (ENSORLG00000008495) #22	ENSORLG00000029826	TBRG4 (ENSORLG00000008558)	ENSORLG00000008599	ENSORLG00000008614	ENSORLG00000022980	dgat1b (ENSORLG00000008631)	ENSORLG00000025651	ENSORLG00000025955	GALNT1 (ENSORLG00000008696)	ino80c (ENSORLG00000008652)	TMEM245 (ENSORLG00000008707)	FRRS1L (ENSORLG00000008710)	alg2 (ENSORLG00000008717)	sec61b (ENSORLG00000021833)	nr4a3 (ENSORLG00000008732)
Chinese medaka	MODERN SPECIES	493	ccdc12 (ENSOSIG00000006485)	ENSOSIG00000007222	ENSOSIG00000007225	rbm12bb (ENSOSIG00000007701)	ENSOSIG00000007702	upp1 (ENSOSIG00000007704)	ENSOSIG00000007708	HEY1 (ENSOSIG00000007959)	fabp4b (ENSOSIG00000007961)	fam8a1b (ENSOSIG00000008079)	ATXN1 (ENSOSIG00000008122)	ITGA8 (ENSOSIG00000008123)	mindy3 (ENSOSIG00000008130)	ENSOSIG00000008148	ENSOSIG00000008151	glipr2l (ENSOSIG00000008153) #22	ENSOSIG00000008155	ENSOSIG00000008156	steap4 (ENSOSIG00000008161)	ENSOSIG00000008165	ENSOSIG00000008169	TBRG4 (ENSOSIG00000008175)	ENSOSIG00000008177	SLC45A4 (ENSOSIG00000008184)	dgat1b (ENSOSIG00000008210)	SCRT1 (ENSOSIG00000008213)	ino80c (ENSOSIG00000008214)	GALNT1 (ENSOSIG00000008218)	ENSOSIG00000008271	FRRS1L (ENSOSIG00000008272)	alg2 (ENSOSIG00000008273)
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.h.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.g	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.h.a.b	ENSGT00390000008042.B.q	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.h.b	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES	11	ppp3cca (ENSOMEG00000003329)	adam28 (ENSOMEG00000003375)	tcima (ENSOMEG00000003390)	OXGR1 (ENSOMEG00000003407)	ENSOMEG00000003441	sfrp1a (ENSOMEG00000003460)	GOLGA7 (ENSOMEG00000003481)	loxl2b (ENSOMEG00000003519)	cyb561a3a (ENSOMEG00000003542)	hdr (ENSOMEG00000003556)	UNC5D (ENSOMEG00000003589)	tm2d2 (ENSOMEG00000003612)	lman2lb (ENSOMEG00000003621)	endog (ENSOMEG00000003638)	ENSOMEG00000003671	ENSOMEG00000003692 #22	tubb2b (ENSOMEG00000003718)	ENSOMEG00000003859	nelfb (ENSOMEG00000003902)	dnah9 (ENSOMEG00000003927)	ENSOMEG00000003939	ENSOMEG00000000091	ENSOMEG00000003963	NTNG2 (ENSOMEG00000003985)	ENSOMEG00000004051	pomt1 (ENSOMEG00000004116)	snapc4 (ENSOMEG00000004166)	ENSOMEG00000004181	golga1 (ENSOMEG00000004228)	rpl35 (ENSOMEG00000004245)	ENSOMEG00000004253
Indian medaka	MODERN SPECIES	5	HEY1 (ENSOMEG00000003213)	fabp4b (ENSOMEG00000003227)	fam8a1b (ENSOMEG00000003243)	ATXN1 (ENSOMEG00000003259)	ITGA8 (ENSOMEG00000003306)	mindy3 (ENSOMEG00000001020)	ENSOMEG00000003399	ENSOMEG00000003415	ENSOMEG00000003431	ENSOMEG00000003507	ENSOMEG00000003548	ENSOMEG00000003576	ENSOMEG00000003595	steap4 (ENSOMEG00000003615)	ENSOMEG00000003630	glipr2l (ENSOMEG00000003677) #22	ENSOMEG00000003706	TBRG4 (ENSOMEG00000003748)	DENND3 (ENSOMEG00000000085)	SLC45A4 (ENSOMEG00000003814)	ENSOMEG00000003834	dgat1b (ENSOMEG00000003914)	SCRT1 (ENSOMEG00000003925)	ino80c (ENSOMEG00000003943)	GALNT1 (ENSOMEG00000003970)	ENSOMEG00000003989	ENSOMEG00000004000	FRRS1L (ENSOMEG00000004012)	alg2 (ENSOMEG00000004027)	ENSOMEG00000004043	nr4a3 (ENSOMEG00000004067)
Javanese ricefish	DUPLICATION
Javanese ricefish	MODERN SPECIES	23	nr6a1a (ENSOJAG00000012646)	olfml2a (ENSOJAG00000012907)	ENSOJAG00000012928	ENSOJAG00000012944	rpl35 (ENSOJAG00000012953)	golga1 (ENSOJAG00000012999)	ENSOJAG00000013066	ENSOJAG00000013100	ENSOJAG00000013164	pomt1 (ENSOJAG00000013239)	ENSOJAG00000013718	NTNG2 (ENSOJAG00000013735)	nelfb (ENSOJAG00000016769)	endog (ENSOJAG00000016954)	ENSOJAG00000017020	ENSOJAG00000017030 #22	ENSOJAG00000017044	FKBP15 (ENSOJAG00000017072)	ENSOJAG00000017225	ralgds (ENSOJAG00000017274)	ptgesl (ENSOJAG00000017416)	gle1 (ENSOJAG00000017430)	SMARCB1 (ENSOJAG00000017471)	ENSOJAG00000017564	gstt1a (ENSOJAG00000017574)	tor2a (ENSOJAG00000017582)	SH2D3C (ENSOJAG00000017583)	ENSOJAG00000017589	ENSOJAG00000017601	ENSOJAG00000017622	cnot6l (ENSOJAG00000017630)
Javanese ricefish	MODERN SPECIES	7	upp1 (ENSOJAG00000015027)	ENSOJAG00000015283	HEY1 (ENSOJAG00000015290)	ENSOJAG00000015299	fam8a1b (ENSOJAG00000015304)	ATXN1 (ENSOJAG00000015311)	ITGA8 (ENSOJAG00000015372)	mindy3 (ENSOJAG00000015620)	ENSOJAG00000015752	ENSOJAG00000015761	ENSOJAG00000015775	ENSOJAG00000015799	ENSOJAG00000015982	steap4 (ENSOJAG00000015996)	ENSOJAG00000016085	glipr2l (ENSOJAG00000016091) #22	ENSOJAG00000016101	TBRG4 (ENSOJAG00000016110)	ENSOJAG00000016132	SLC45A4 (ENSOJAG00000016627)	dgat1b (ENSOJAG00000016755)	SCRT1 (ENSOJAG00000017526)	ino80c (ENSOJAG00000017534)	GALNT1 (ENSOJAG00000017560)	TMEM245 (ENSOJAG00000017894)	FRRS1L (ENSOJAG00000018307)	alg2 (ENSOJAG00000018314)	sec61b (ENSOJAG00000018323)	nr4a3 (ENSOJAG00000018329)	stx17 (ENSOJAG00000018343)	erp44 (ENSOJAG00000018361)
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Midas cichlid	MODERN SPECIES	303	ENSACIG00000014909	HEY1 (ENSACIG00000014891)	ENSACIG00000014715	fam8a1b (ENSACIG00000014675)	ATXN1 (ENSACIG00000014661)	ITGA8 (ENSACIG00000014542)	mindy3 (ENSACIG00000014511)	ENSACIG00000014432	steap4 (ENSACIG00000014398)	ENSACIG00000014380	ENSACIG00000014336	ENSACIG00000014294	ENSACIG00000014240	ENSACIG00000014169	steap4 (ENSACIG00000014067)	glipr2l (ENSACIG00000014042) #22	ENSACIG00000014027	TBRG4 (ENSACIG00000013917)	ATP4A (ENSACIG00000013867)	DENND3 (ENSACIG00000013765)	SLC45A4 (ENSACIG00000013704)	ENSACIG00000013673	dgat1b (ENSACIG00000013626)	SCRT1 (ENSACIG00000013613)	ino80c (ENSACIG00000013594)	GALNT1 (ENSACIG00000013565)	TMEM245 (ENSACIG00000013532)	FRRS1L (ENSACIG00000013516)	alg2 (ENSACIG00000013502)	sec61b (ENSACIG00000013491)	ENSACIG00000013484
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Nile tilapia	MODERN SPECIES	2	HEY1 (ENSONIG00000003087)	fabp4b (ENSONIG00000003090)	fam8a1b (ENSONIG00000003093)	ATXN1 (ENSONIG00000003094)	ENSONIG00000003095	mindy3 (ENSONIG00000003121)	ENSONIG00000003126	ENSONIG00000040814	steap4 (ENSONIG00000033697)	ENSONIG00000042849	ENSONIG00000036973	ENSONIG00000005953	ENSONIG00000037297	ENSONIG00000005955	steap4 (ENSONIG00000005957)	glipr2l (ENSONIG00000005963) #22	ENSONIG00000033464	ENSONIG00000005969	ATP4A (ENSONIG00000005974)	DENND3 (ENSONIG00000005993)	SLC45A4 (ENSONIG00000005996)	ENSONIG00000005999	dgat1b (ENSONIG00000006003)	ENSONIG00000033292	SCRT1 (ENSONIG00000006007)	ino80c (ENSONIG00000006010)	GALNT1 (ENSONIG00000006013)	TMEM245 (ENSONIG00000006020)	FRRS1L (ENSONIG00000006022)	alg2 (ENSONIG00000006025)	sec61b (ENSONIG00000040544)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Lyretail cichlid	MODERN SPECIES	369	upp1 (ENSNBRG00000015020)	ENSNBRG00000015005	HEY1 (ENSNBRG00000014983)	fabp4b (ENSNBRG00000014819)	fam8a1b (ENSNBRG00000014794)	ATXN1 (ENSNBRG00000014776)	ITGA8 (ENSNBRG00000014692)	mindy3 (ENSNBRG00000014659)	ENSNBRG00000014646	steap4 (ENSNBRG00000014533)	ENSNBRG00000014439	ENSNBRG00000014417	ENSNBRG00000014409	ENSNBRG00000014342	steap4 (ENSNBRG00000014328)	glipr2l (ENSNBRG00000014308) #22	ENSNBRG00000014287	ENSNBRG00000014277	ATP4A (ENSNBRG00000014229)	DENND3 (ENSNBRG00000014161)	SLC45A4 (ENSNBRG00000014121)	GPR20 (ENSNBRG00000014102)	ENSNBRG00000014075	dgat1b (ENSNBRG00000013998)	SCRT1 (ENSNBRG00000013983)	ino80c (ENSNBRG00000013978)	GALNT1 (ENSNBRG00000013924)	TMEM245 (ENSNBRG00000013874)	FRRS1L (ENSNBRG00000013851)	alg2 (ENSNBRG00000013833)	sec61b (ENSNBRG00000013815)
Haplochromini	ANCESTRAL SPECIES	6	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01030000237748	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Burton s mouthbrooder	MODERN SPECIES	498												ENSHBUG00000017058	ENSHBUG00000017001	ENSHBUG00000016958	steap4 (ENSHBUG00000016921)	glipr2l (ENSHBUG00000016906) #22	ENSHBUG00000016872	ENSHBUG00000016854	ATP4A (ENSHBUG00000016838)	ENSHBUG00000016770	ENSHBUG00000016763	SLC45A4 (ENSHBUG00000016735)	GPR20 (ENSHBUG00000016670)	dgat1b (ENSHBUG00000016634)	SCRT1 (ENSHBUG00000016621)	ino80c (ENSHBUG00000000491)	GALNT1 (ENSHBUG00000000985)	TMEM245 (ENSHBUG00000016495)	FRRS1L (ENSHBUG00000016355)	alg2 (ENSHBUG00000016349)	sec61b (ENSHBUG00000016330)
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01030000237748	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
P. nyererei	MODERN SPECIES	379	ENSPNYG00000016714	upp1 (ENSPNYG00000016759)	ENSPNYG00000016836	HEY1 (ENSPNYG00000016854)	fabp4b (ENSPNYG00000016885)	fam8a1b (ENSPNYG00000017079)	ATXN1 (ENSPNYG00000017095)	ENSPNYG00000017129	mindy3 (ENSPNYG00000017223)	ENSPNYG00000017265	ENSPNYG00000017280	steap4 (ENSPNYG00000017296)	ENSPNYG00000017328	ENSPNYG00000017374	steap4 (ENSPNYG00000017412)	glipr2l (ENSPNYG00000017424) #22	ENSPNYG00000017431	ENSPNYG00000017453	ATP4A (ENSPNYG00000017472)	DENND3 (ENSPNYG00000017530)	SLC45A4 (ENSPNYG00000017594)	ENSPNYG00000017627	dgat1b (ENSPNYG00000017672)	SCRT1 (ENSPNYG00000017733)	ino80c (ENSPNYG00000017746)	GALNT1 (ENSPNYG00000017769)	TMEM245 (ENSPNYG00000017839)	FRRS1L (ENSPNYG00000017887)	alg2 (ENSPNYG00000017902)	sec61b (ENSPNYG00000017915)	nr4a3 (ENSPNYG00000017926)
Haplochromini_B	DUPLICATION
Haplochromini_B	DUPLICATION
Haplochromini_B	ANCESTRAL SPECIES	44	ENSGT00940000180886	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00550000074961.a	ENSGT00940000153772.B	ENSGT00390000016384.m	ENSGT00990000203759	ENSGT00940000157194	ENSGT00940000157936	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000161534	ENSGT00940000158540	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000165492.b	ENSGT00390000020276.z.a #22	ENSGT00940000178161.a	ENSGT00940000154394.a	ENSGT00620000089226	ENSGT00940000164907.b.a	ENSGT00940000155151.a.a.a	ENSGT00530000064286	ENSGT00940000167390	ENSGT01100000263542.B.b.a.b	ENSGT00390000012665	ENSGT01080000257442	ENSGT00940000166440	ENSGT00940000155794.h.g.b.a.a.a.a.b	ENSGT00390000015977	ENSGT00530000063723.a	ENSGT00900000143393
Zebra mbuna	MODERN SPECIES	1094	WHRN (ENSMZEG00005017800)	ENSMZEG00005017806	stxbp1b (ENSMZEG00005017808)	niban2b (ENSMZEG00005017814)	ENSMZEG00005017819	FUT7 (ENSMZEG00005017821)	ENSMZEG00005017826	ENSMZEG00005017846	ABCA2 (ENSMZEG00005018396)	HMGCR (ENSMZEG00005018425)	FXN (ENSMZEG00005018430)	APBA1 (ENSMZEG00005018435)	ptar1 (ENSMZEG00005018445)	arid3c (ENSMZEG00005018451)	pias2 (ENSMZEG00005018453)	ENSMZEG00005018456 #22	ENSMZEG00005018459	ENSMZEG00005018462	ENSMZEG00005018466	tubb2b (ENSMZEG00005018470)	ENSMZEG00005018473	ENSMZEG00005018483	ccn1l2 (ENSMZEG00005018490)	FKBP15 (ENSMZEG00005018492)	fgf17 (ENSMZEG00005018507)	entpd2a.1 (ENSMZEG00005018626)	nelfb (ENSMZEG00005018628)	ENSMZEG00005018633	arrdc1a (ENSMZEG00005018638)	ggt5a (ENSMZEG00005018640)	dgcr8 (ENSMZEG00005018646)
Eastern happy	MODERN SPECIES	3	ENSACLG00000018389	rpl35 (ENSACLG00000018408)	golga1 (ENSACLG00000018421)	PPP6C (ENSACLG00000018501)	golga1 (ENSACLG00000018552)	ENSACLG00000018704	rpl35 (ENSACLG00000018708)	ENSACLG00000018725	olfml2a (ENSACLG00000018754)	nr6a1a (ENSACLG00000018803)	ENSACLG00000018888	nr5a1a (ENSACLG00000018895)	ADGRD2 (ENSACLG00000018926)	lhx2b (ENSACLG00000018962)	ENSACLG00000019037	ENSACLG00000019045 #22	ENSACLG00000019082	ENSACLG00000019105 #22	ENSACLG00000019124 #22	ENSACLG00000019159 #22	ENSACLG00000019171	ENSACLG00000019182	ENSACLG00000019210	ENSACLG00000019223	ENSACLG00000019242	ccn1l2 (ENSACLG00000019277)	FKBP15 (ENSACLG00000019322)	ENSACLG00000019509	fgf17 (ENSACLG00000019521)	entpd2a.1 (ENSACLG00000019573)	nelfb (ENSACLG00000019587)
Haplochromini_B	DUPLICATION
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000020276.z.b.a #22
Eastern happy	DUPLICATION
Eastern happy	MODERN SPECIES	3	golga1 (ENSACLG00000018421)	PPP6C (ENSACLG00000018501)	golga1 (ENSACLG00000018552)	ENSACLG00000018704	rpl35 (ENSACLG00000018708)	ENSACLG00000018725	olfml2a (ENSACLG00000018754)	nr6a1a (ENSACLG00000018803)	ENSACLG00000018888	nr5a1a (ENSACLG00000018895)	ADGRD2 (ENSACLG00000018926)	lhx2b (ENSACLG00000018962)	ENSACLG00000019037	ENSACLG00000019045 #22	ENSACLG00000019082	ENSACLG00000019105 #22	ENSACLG00000019124 #22	ENSACLG00000019159 #22	ENSACLG00000019171	ENSACLG00000019182	ENSACLG00000019210	ENSACLG00000019223	ENSACLG00000019242	ccn1l2 (ENSACLG00000019277)	FKBP15 (ENSACLG00000019322)	ENSACLG00000019509	fgf17 (ENSACLG00000019521)	entpd2a.1 (ENSACLG00000019573)	nelfb (ENSACLG00000019587)	ENSACLG00000019681	arrdc1a (ENSACLG00000019685)
Eastern happy	MODERN SPECIES	3	PPP6C (ENSACLG00000018501)	golga1 (ENSACLG00000018552)	ENSACLG00000018704	rpl35 (ENSACLG00000018708)	ENSACLG00000018725	olfml2a (ENSACLG00000018754)	nr6a1a (ENSACLG00000018803)	ENSACLG00000018888	nr5a1a (ENSACLG00000018895)	ADGRD2 (ENSACLG00000018926)	lhx2b (ENSACLG00000018962)	ENSACLG00000019037	ENSACLG00000019045 #22	ENSACLG00000019082	ENSACLG00000019105 #22	ENSACLG00000019124 #22	ENSACLG00000019159 #22	ENSACLG00000019171	ENSACLG00000019182	ENSACLG00000019210	ENSACLG00000019223	ENSACLG00000019242	ccn1l2 (ENSACLG00000019277)	FKBP15 (ENSACLG00000019322)	ENSACLG00000019509	fgf17 (ENSACLG00000019521)	entpd2a.1 (ENSACLG00000019573)	nelfb (ENSACLG00000019587)	ENSACLG00000019681	arrdc1a (ENSACLG00000019685)	ggt5a (ENSACLG00000019708)
Zebra mbuna	MODERN SPECIES	1094	ENSMZEG00005017806	WHRN (ENSMZEG00005017800)	noxa1 (ENSMZEG00005017794)	dpp7 (ENSMZEG00005017784)	PPP6C (ENSMZEG00005017775)	golga1 (ENSMZEG00005017765)	rpl35 (ENSMZEG00005017762)	ENSMZEG00005017758	olfml2a (ENSMZEG00005017754)	nr6a1a (ENSMZEG00005017725)	nr5a1a (ENSMZEG00005017716)	ADGRD2 (ENSMZEG00005017706)	lhx2b (ENSMZEG00005017695)	ENSMZEG00005017678	ENSMZEG00005017673 #22	ENSMZEG00005017668 #22	ENSMZEG00005017660 #22	ENSMZEG00005017657 #22
Haplochromini_B	DUPLICATION
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000020276.z.b.b.a #22
Eastern happy	MODERN SPECIES	3	golga1 (ENSACLG00000018552)	ENSACLG00000018704	rpl35 (ENSACLG00000018708)	ENSACLG00000018725	olfml2a (ENSACLG00000018754)	nr6a1a (ENSACLG00000018803)	ENSACLG00000018888	nr5a1a (ENSACLG00000018895)	ADGRD2 (ENSACLG00000018926)	lhx2b (ENSACLG00000018962)	ENSACLG00000019037	ENSACLG00000019045 #22	ENSACLG00000019082	ENSACLG00000019105 #22	ENSACLG00000019124 #22	ENSACLG00000019159 #22	ENSACLG00000019171	ENSACLG00000019182	ENSACLG00000019210	ENSACLG00000019223	ENSACLG00000019242	ccn1l2 (ENSACLG00000019277)	FKBP15 (ENSACLG00000019322)	ENSACLG00000019509	fgf17 (ENSACLG00000019521)	entpd2a.1 (ENSACLG00000019573)	nelfb (ENSACLG00000019587)	ENSACLG00000019681	arrdc1a (ENSACLG00000019685)	ggt5a (ENSACLG00000019708)	dgcr8 (ENSACLG00000019757)
Zebra mbuna	MODERN SPECIES	1094	noxa1 (ENSMZEG00005017794)	dpp7 (ENSMZEG00005017784)	PPP6C (ENSMZEG00005017775)	golga1 (ENSMZEG00005017765)	rpl35 (ENSMZEG00005017762)	ENSMZEG00005017758	olfml2a (ENSMZEG00005017754)	nr6a1a (ENSMZEG00005017725)	nr5a1a (ENSMZEG00005017716)	ADGRD2 (ENSMZEG00005017706)	lhx2b (ENSMZEG00005017695)	ENSMZEG00005017678	ENSMZEG00005017673 #22	ENSMZEG00005017668 #22	ENSMZEG00005017660 #22	ENSMZEG00005017657 #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00390000020276.z.b.b.b #22
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1094	WHRN (ENSMZEG00005017800)	noxa1 (ENSMZEG00005017794)	dpp7 (ENSMZEG00005017784)	PPP6C (ENSMZEG00005017775)	golga1 (ENSMZEG00005017765)	rpl35 (ENSMZEG00005017762)	ENSMZEG00005017758	olfml2a (ENSMZEG00005017754)	nr6a1a (ENSMZEG00005017725)	nr5a1a (ENSMZEG00005017716)	ADGRD2 (ENSMZEG00005017706)	lhx2b (ENSMZEG00005017695)	ENSMZEG00005017678	ENSMZEG00005017673 #22	ENSMZEG00005017668 #22	ENSMZEG00005017660 #22	ENSMZEG00005017657 #22
Zebra mbuna	MODERN SPECIES	1094	stxbp1b (ENSMZEG00005017808)	ENSMZEG00005017806	WHRN (ENSMZEG00005017800)	noxa1 (ENSMZEG00005017794)	dpp7 (ENSMZEG00005017784)	PPP6C (ENSMZEG00005017775)	golga1 (ENSMZEG00005017765)	rpl35 (ENSMZEG00005017762)	ENSMZEG00005017758	olfml2a (ENSMZEG00005017754)	nr6a1a (ENSMZEG00005017725)	nr5a1a (ENSMZEG00005017716)	ADGRD2 (ENSMZEG00005017706)	lhx2b (ENSMZEG00005017695)	ENSMZEG00005017678	ENSMZEG00005017673 #22	ENSMZEG00005017668 #22	ENSMZEG00005017660 #22	ENSMZEG00005017657 #22
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01030000237748	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276.`b #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Zebra mbuna	MODERN SPECIES	1093	ENSMZEG00005015026	HEY1 (ENSMZEG00005015039)	fabp4b (ENSMZEG00005015051)	fam8a1b (ENSMZEG00005015056)	ATXN1 (ENSMZEG00005015064)	ITGA8 (ENSMZEG00005015070)	mindy3 (ENSMZEG00005015089)	ENSMZEG00005015112	ENSMZEG00005015123	steap4 (ENSMZEG00005015128)	ENSMZEG00005015140	ENSMZEG00005015150	ENSMZEG00005015161	ENSMZEG00005015166	steap4 (ENSMZEG00005015173)	glipr2l (ENSMZEG00005015177) #22	ENSMZEG00005015184	ENSMZEG00005015189	ATP4A (ENSMZEG00005015199)	DENND3 (ENSMZEG00005015234)	SLC45A4 (ENSMZEG00005015260)	ENSMZEG00005015274	dgat1b (ENSMZEG00005015343)	ENSMZEG00005015365	efna3b (ENSMZEG00005015372)	efna1b (ENSMZEG00005015381)	slc50a1 (ENSMZEG00005015388)	TRIM46 (ENSMZEG00005015402)	tmem107 (ENSMZEG00005015423)	krtcap2 (ENSMZEG00005015446)	s100a10b (ENSMZEG00005015453)
Eastern happy	MODERN SPECIES	2	HEY1 (ENSACLG00000005650)	fabp4b (ENSACLG00000005673)	fam8a1b (ENSACLG00000005678)	ATXN1 (ENSACLG00000005697)	ITGA8 (ENSACLG00000005710)	mindy3 (ENSACLG00000006399)	ENSACLG00000006430	ENSACLG00000006443	steap4 (ENSACLG00000006447)	ENSACLG00000006459	ENSACLG00000006471	ENSACLG00000006478	ENSACLG00000006484	ENSACLG00000006493	steap4 (ENSACLG00000006504)	glipr2l (ENSACLG00000006517) #22	ENSACLG00000006531	ENSACLG00000006544	ATP4A (ENSACLG00000006550)	ENSACLG00000006600	ENSACLG00000007112	ENSACLG00000007137	dgat1b (ENSACLG00000007146)	SCRT1 (ENSACLG00000007162)	ino80c (ENSACLG00000007245)	GALNT1 (ENSACLG00000007261)	TMEM245 (ENSACLG00000007372)	FRRS1L (ENSACLG00000007429)	alg2 (ENSACLG00000007433)	sec61b (ENSACLG00000007442)	ENSACLG00000007447
Pomacentridae	ANCESTRAL SPECIES	18	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Bicolor damselfish	MODERN SPECIES	324	fam8a1b (ENSSPAG00000003408)	ATXN1 (ENSSPAG00000003388)	ITGA8 (ENSSPAG00000003334)	mindy3 (ENSSPAG00000003284)	ENSSPAG00000003256	steap4 (ENSSPAG00000003133)	ENSSPAG00000003044	ENSSPAG00000002745	ENSSPAG00000002719	ENSSPAG00000002703	ENSSPAG00000002696	ENSSPAG00000002669	ENSSPAG00000002644	ENSSPAG00000002617	steap4 (ENSSPAG00000002598)	glipr2l (ENSSPAG00000002571) #22	ENSSPAG00000002561	ENSSPAG00000002511	ENSSPAG00000002482	ATP4A (ENSSPAG00000002398)	DENND3 (ENSSPAG00000002359)	SLC45A4 (ENSSPAG00000002339)	GPR20 (ENSSPAG00000002293)	dgat1b (ENSSPAG00000002218)	SCRT1 (ENSSPAG00000002200)	ino80c (ENSSPAG00000002181)	GALNT1 (ENSSPAG00000002098)
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Spiny chromis	MODERN SPECIES	268						ATXN1 (ENSAPOG00000005003)	ITGA8 (ENSAPOG00000004971)	mindy3 (ENSAPOG00000004804)	ENSAPOG00000004772	ENSAPOG00000004753	steap4 (ENSAPOG00000004703)	ENSAPOG00000004534	ENSAPOG00000004512	ENSAPOG00000004493	steap4 (ENSAPOG00000004450)	glipr2l (ENSAPOG00000004427) #22	ENSAPOG00000004398	ENSAPOG00000000108	ATP4A (ENSAPOG00000004382)	DENND3 (ENSAPOG00000004292)	SLC45A4 (ENSAPOG00000004134)	GPR20 (ENSAPOG00000004073)	dgat1b (ENSAPOG00000004052)
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a.k	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a.l	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Clown anemonefish	MODERN SPECIES	1347				NUAK1 (ENSAOCG00000004289)	ENSAOCG00000004267	prl2 (ENSAOCG00000004241)	szl (ENSAOCG00000004219)	ENSAOCG00000004203	NELL2 (ENSAOCG00000004181)	steap4 (ENSAOCG00000004145)	ENSAOCG00000004133	ENSAOCG00000004128	ENSAOCG00000004111	ENSAOCG00000004086	steap4 (ENSAOCG00000004052)	glipr2l (ENSAOCG00000004026) #22	ENSAOCG00000004020	ENSAOCG00000000120	ATP4A (ENSAOCG00000004011)	DENND3 (ENSAOCG00000003995)	SLC45A4 (ENSAOCG00000003972)	GPR20 (ENSAOCG00000003950)	dgat1b (ENSAOCG00000003933)	SCRT1 (ENSAOCG00000003910)	ino80c (ENSAOCG00000003907)
Orange clownfish	MODERN SPECIES	21	upp1 (ENSAPEG00000022138)	stmn2b (ENSAPEG00000022163)	HEY1 (ENSAPEG00000022181)	fam8a1b (ENSAPEG00000022206)	ATXN1 (ENSAPEG00000022436)	ITGA8 (ENSAPEG00000022470)	mindy3 (ENSAPEG00000022645)	ENSAPEG00000022694	ENSAPEG00000022714	steap4 (ENSAPEG00000022725)	ENSAPEG00000022772	ENSAPEG00000022811	ENSAPEG00000000324	ENSAPEG00000000354	steap4 (ENSAPEG00000000361)	glipr2l (ENSAPEG00000000368) #22	ENSAPEG00000000405	TBRG4 (ENSAPEG00000000413)	ATP4A (ENSAPEG00000000426)	DENND3 (ENSAPEG00000000517)	SLC45A4 (ENSAPEG00000000692)	GPR20 (ENSAPEG00000000743)	dgat1b (ENSAPEG00000000792)	SCRT1 (ENSAPEG00000000869)	ino80c (ENSAPEG00000000884)	GALNT1 (ENSAPEG00000000920)	TMEM245 (ENSAPEG00000000973)	FRRS1L (ENSAPEG00000001051)	alg2 (ENSAPEG00000001063)	sec61b (ENSAPEG00000001095)	nr4a3 (ENSAPEG00000001103)
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Carangaria	ANCESTRAL SPECIES	1	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000158322.i	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Turbot	MODERN SPECIES		rbm12bb (ENSSMAG00000019708)	ENSSMAG00000019697	upp1 (ENSSMAG00000019687)	ENSSMAG00000019673	ENSSMAG00000019653	ENSSMAG00000019646	ENSSMAG00000019633	ENSSMAG00000019621	ENSSMAG00000019560	mindy3 (ENSSMAG00000019499)	ENSSMAG00000019489	ENSSMAG00000019486	steap4 (ENSSMAG00000019462)	ENSSMAG00000019419	steap4 (ENSSMAG00000019366)	glipr2l (ENSSMAG00000019343) #22	ENSSMAG00000019325	ENSSMAG00000019314	ENSSMAG00000019281	ENSSMAG00000019259	ENSSMAG00000019249	ENSSMAG00000019229	dgat1b (ENSSMAG00000019213)	ENSSMAG00000037517	ino80c (ENSSMAG00000031228)	ENSSMAG00000019182	ENSSMAG00000019137	ENSSMAG00000022159	ENSSMAG00000008400	alg2 (ENSSMAG00000019094)	sec61b (ENSSMAG00000019079)
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	398	FBXO4 (ENSCSEG00000017441)	rimoc1 (ENSCSEG00000017432)	oxct1a (ENSCSEG00000017403)	plcxd3 (ENSCSEG00000017392)	ENSCSEG00000017370	rgs7bpa (ENSCSEG00000017358)	ENSCSEG00000017346	ENSCSEG00000017336	ipo11 (ENSCSEG00000017257)	ENSCSEG00000017243	nr6a1a (ENSCSEG00000017225)	nr5a1a (ENSCSEG00000017180)	ADGRD2 (ENSCSEG00000017117)	lhx2b (ENSCSEG00000017106)	ENSCSEG00000017065	ENSCSEG00000017004 #22	ENSCSEG00000016975	ENSCSEG00000016907	tmem230b (ENSCSEG00000016900)	tmem230b (ENSCSEG00000016891)	adra1aa (ENSCSEG00000016882)	ENSCSEG00000016866	bnip3la (ENSCSEG00000016851)	ENSCSEG00000016836	vps33a (ENSCSEG00000016817)	ENSCSEG00000016786	ENSCSEG00000016781	ENSCSEG00000016761	ENSCSEG00000016713	HECTD4 (ENSCSEG00000016640)	SDS (ENSCSEG00000016621)
Tongue sole	MODERN SPECIES	4	me1 (ENSCSEG00000008708)	prdm13 (ENSCSEG00000008693)	zgc:172323 (ENSCSEG00000008680)	tstd3 (ENSCSEG00000008672)	usp45 (ENSCSEG00000008663)	pnisr (ENSCSEG00000008657)	coq3 (ENSCSEG00000008645)	FAXC (ENSCSEG00000008638)	fbxl4 (ENSCSEG00000008611)	SCRT1 (ENSCSEG00000008596)	ino80c (ENSCSEG00000008588)	GALNT1 (ENSCSEG00000008558)	ENSCSEG00000008535	TMEM245 (ENSCSEG00000008508)	steap4 (ENSCSEG00000008493)	glipr2l (ENSCSEG00000008475) #22	ENSCSEG00000008471	ENSCSEG00000008459	DENND3 (ENSCSEG00000008272)	SLC45A4 (ENSCSEG00000008212)	dgat1b (ENSCSEG00000008167)	ENSCSEG00000008156	RXRB (ENSCSEG00000007853)	ENSCSEG00000007813	ENSCSEG00000007808	ENSCSEG00000007780	ENSCSEG00000007747	AIF1 (ENSCSEG00000007741)	csnk2b (ENSCSEG00000007729)	ENSCSEG00000007633	PON1 (ENSCSEG00000007602)
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Seriola	ANCESTRAL SPECIES	56	ENSGT00940000157781.k	ENSGT00940000157781.l	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b
Yellowtail amberjack	MODERN SPECIES	2583	upp1 (ENSSLDG00000016176)	upp1 (ENSSLDG00000016210)	stmn2b (ENSSLDG00000016230)	HEY1 (ENSSLDG00000016254)	fabp4b (ENSSLDG00000016283)	fam8a1b (ENSSLDG00000016294)	ATXN1 (ENSSLDG00000016306)	ITGA8 (ENSSLDG00000016338)	mindy3 (ENSSLDG00000016434)	ENSSLDG00000016498	ENSSLDG00000016521	steap4 (ENSSLDG00000016551)	ENSSLDG00000016575	ENSSLDG00000016587	steap4 (ENSSLDG00000016605)	glipr2l (ENSSLDG00000016639) #22	ENSSLDG00000016666	TBRG4 (ENSSLDG00000016682)	ATP4A (ENSSLDG00000016711)	DENND3 (ENSSLDG00000016761)	SLC45A4 (ENSSLDG00000016818)	GPR20 (ENSSLDG00000016910)	dgat1b (ENSSLDG00000016981)	SCRT1 (ENSSLDG00000017166)	ino80c (ENSSLDG00000017181)	GALNT1 (ENSSLDG00000017210)
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	6	ENSSDUG00000011015	ENSSDUG00000011013	HACE1 (ENSSDUG00000010931)	ENSSDUG00000010911	ENSSDUG00000010900	ENSSDUG00000010886	ENSSDUG00000010860	ENSSDUG00000010846	ENSSDUG00000010833	ENSSDUG00000010823	cdk14 (ENSSDUG00000010726)	fzd1 (ENSSDUG00000010707)	ENSSDUG00000010699	lhx2b (ENSSDUG00000010678)	ENSSDUG00000010516	ENSSDUG00000010476 #22	ENSSDUG00000010468	tubb2b (ENSSDUG00000010437)	ENSSDUG00000010418	ccn1l2 (ENSSDUG00000010401)	FKBP15 (ENSSDUG00000010366)	fgf17 (ENSSDUG00000010245)	entpd2a.1 (ENSSDUG00000010214)	nelfb (ENSSDUG00000010179)	arrdc1a (ENSSDUG00000010155)	ENSSDUG00000010136	ENSSDUG00000010115	ENSSDUG00000010101	cacna1ba (ENSSDUG00000009992)	dpp7 (ENSSDUG00000009953)	man1b1b (ENSSDUG00000009927)
Greater amberjack	MODERN SPECIES	181	ENSSDUG00000006858	upp1 (ENSSDUG00000006872)	upp1 (ENSSDUG00000006907)	stmn2b (ENSSDUG00000006930)	HEY1 (ENSSDUG00000006942)	fabp4b (ENSSDUG00000006962)	fam8a1b (ENSSDUG00000006979)	ATXN1 (ENSSDUG00000006990)	ITGA8 (ENSSDUG00000007007)	mindy3 (ENSSDUG00000007055)	ENSSDUG00000007112	steap4 (ENSSDUG00000007126)	ENSSDUG00000007154	ENSSDUG00000007241	steap4 (ENSSDUG00000007253)	glipr2l (ENSSDUG00000007282) #22	ENSSDUG00000007298	TBRG4 (ENSSDUG00000007310)	ATP4A (ENSSDUG00000007332)	DENND3 (ENSSDUG00000007422)	SLC45A4 (ENSSDUG00000007629)	GPR20 (ENSSDUG00000007653)	dgat1b (ENSSDUG00000007680)	SCRT1 (ENSSDUG00000007752)	ino80c (ENSSDUG00000007757)	GALNT1 (ENSSDUG00000007783)
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	95	ENSLCAG00010027333	zfr (ENSLCAG00010027324)	sh3glb2a (ENSLCAG00010027311)	ENSLCAG00010027304	PPP6C (ENSLCAG00010027298)	ENSLCAG00010027294	golga1 (ENSLCAG00010027286)	ENSLCAG00010027272	olfml2a (ENSLCAG00010027266)	nr6a1a (ENSLCAG00010027256)	nr5a1a (ENSLCAG00010027244)	ENSLCAG00010027230	lhx2b (ENSLCAG00010027228)	ENSLCAG00010027224	FPGS (ENSLCAG00010027220)	ENSLCAG00010027216 #22	tubb2b (ENSLCAG00010027211)	ENSLCAG00010027206	ENSLCAG00010027204	ccn1l2 (ENSLCAG00010027198)	ENSLCAG00010027194	fgf17 (ENSLCAG00010027172)	entpd2a.1 (ENSLCAG00010027167)	nelfb (ENSLCAG00010027153)	ENSLCAG00010027136	arrdc1a (ENSLCAG00010027129)	ehmt1a (ENSLCAG00010027055)	cacna1ba (ENSLCAG00010025823)	PNPLA7 (ENSLCAG00010024578)	mrpl41 (ENSLCAG00010024534)	dph7 (ENSLCAG00010024530)
Barramundi perch	MODERN SPECIES	17	rbm12bb (ENSLCAG00010013024)	ENSLCAG00010013026	upp1 (ENSLCAG00010013031)	ENSLCAG00010013034	HEY1 (ENSLCAG00010013038)	ENSLCAG00010013042	fam8a1b (ENSLCAG00010013046)	ATXN1 (ENSLCAG00010013047)	ITGA8 (ENSLCAG00010013051)	mindy3 (ENSLCAG00010013064)	ENSLCAG00010013078	ENSLCAG00010013081	steap4 (ENSLCAG00010013083)	ENSLCAG00010013088	steap4 (ENSLCAG00010013095)	glipr2l (ENSLCAG00010013101) #22	ENSLCAG00010013106	TBRG4 (ENSLCAG00010013111)	ATP4A (ENSLCAG00010013219)	DENND3 (ENSLCAG00010013982)	SLC45A4 (ENSLCAG00010014030)	CAAP1 (ENSLCAG00010014034)	ENSLCAG00010014177	ADGRL3 (ENSLCAG00010015142)	MPDZ (ENSLCAG00010016203)	LURAP1L (ENSLCAG00010016272)	TYRP1 (ENSLCAG00010016274)	PTPRD (ENSLCAG00010016357)	USP53 (ENSLCAG00010016704)	myoz2a (ENSLCAG00010016708)	SYNPO2 (ENSLCAG00010016710)
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000158322.i	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000027516	ENSMAMG00000006768	ENSMAMG00000027476	ENSMAMG00000006778	ENSMAMG00000006804	ENSMAMG00000006833	ENSMAMG00000006842	ENSMAMG00000026607	ENSMAMG00000006864	ENSMAMG00000006881	ENSMAMG00000006966	ENSMAMG00000011146	ENSMAMG00000011157	steap4 (ENSMAMG00000011162)	ENSMAMG00000024331	ENSMAMG00000027606 #22	ENSMAMG00000011198	ENSMAMG00000011208	ENSMAMG00000011226	ENSMAMG00000011271	ENSMAMG00000011286	ENSMAMG00000011330	dgat1b (ENSMAMG00000011382)	ENSMAMG00000026338	ENSMAMG00000011698	ino80c (ENSMAMG00000011718)	ENSMAMG00000011736	ENSMAMG00000011774	ENSMAMG00000011781	ENSMAMG00000011853	alg2 (ENSMAMG00000011865)
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000158322.i	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Siamese fighting fish	MODERN SPECIES	7	ENSBSLG00000015746	ENSBSLG00000015540	ENSBSLG00000015521	upp1 (ENSBSLG00000015491)	ENSBSLG00000015459	HEY1 (ENSBSLG00000015441)	fabp4b (ENSBSLG00000015305)	fam8a1b (ENSBSLG00000015166)	ATXN1 (ENSBSLG00000014848)	ENSBSLG00000014407	mindy3 (ENSBSLG00000014268)	ENSBSLG00000014245	ENSBSLG00000014236	ENSBSLG00000014188	ENSBSLG00000014079	glipr2l (ENSBSLG00000013791) #22	ENSBSLG00000013781	TBRG4 (ENSBSLG00000013776)	ATP4A (ENSBSLG00000013651)	DENND3 (ENSBSLG00000013517)	SLC45A4 (ENSBSLG00000013464)	GPR20 (ENSBSLG00000013434)	dgat1b (ENSBSLG00000013232)	SCRT1 (ENSBSLG00000026404)	ino80c (ENSBSLG00000026401)	GALNT1 (ENSBSLG00000026396)	TMEM245 (ENSBSLG00000026385)	FRRS1L (ENSBSLG00000026376)	alg2 (ENSBSLG00000026374)	sec61b (ENSBSLG00000026372)	nr4a3 (ENSBSLG00000026369)
Climbing perch	MODERN SPECIES	7	ENSATEG00000004430	ENSATEG00000026497	ENSATEG00000026707	ENSATEG00000002994	ENSATEG00000002982	ENSATEG00000002958	ENSATEG00000002949	ENSATEG00000029510	ENSATEG00000002762	ENSATEG00000029095	ENSATEG00000002719	ENSATEG00000002691	ENSATEG00000002576	ENSATEG00000002564	steap4 (ENSATEG00000002555)	glipr2l (ENSATEG00000002525) #22	ENSATEG00000002515	ENSATEG00000002508	ENSATEG00000002404	ENSATEG00000002388	ENSATEG00000002381	ENSATEG00000002323	dgat1b (ENSATEG00000002316)	SCRT1 (ENSATEG00000027649)	ino80c (ENSATEG00000002294)	ENSATEG00000002235	ENSATEG00000002161	ENSATEG00000002131	alg2 (ENSATEG00000002090)	alg2 (ENSATEG00000002031)	sec61b (ENSATEG00000002007)
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00940000158322.i	ENSGT00940000171520	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b
Tetraodon	MODERN SPECIES	23	NBEAL2 (ENSTNIG00000018406)	ENSTNIG00000018405	ENSTNIG00000018404	upp1 (ENSTNIG00000018403)	ENSTNIG00000018402	HEY1 (ENSTNIG00000018401)	ENSTNIG00000018400	fam8a1b (ENSTNIG00000018399)	ATXN1 (ENSTNIG00000018398)	ITGA8 (ENSTNIG00000018397)	mindy3 (ENSTNIG00000018396)	NFATC2 (ENSTNIG00000018395)	ENSTNIG00000018394	steap4 (ENSTNIG00000018393)	steap4 (ENSTNIG00000018392)	glipr2l (ENSTNIG00000018391) #22	ENSTNIG00000018390	TBRG4 (ENSTNIG00000018389)	DENND3 (ENSTNIG00000018388)	SLC45A4 (ENSTNIG00000018387)	GPR20 (ENSTNIG00000018386)	dgat1b (ENSTNIG00000018385)	scrt1b (ENSTNIG00000018384)	GALNT1 (ENSTNIG00000018383)	ENSTNIG00000018382	FRRS1L (ENSTNIG00000001653)	alg2 (ENSTNIG00000018381)	sec61b (ENSTNIG00000018380)	nr4a3 (ENSTNIG00000018379)	erp44 (ENSTNIG00000018378)	invs (ENSTNIG00000018377)
Fugu	MODERN SPECIES	19	rbm12bb (ENSTRUG00000013738)	ENSTRUG00000029869	upp1 (ENSTRUG00000013660)	ENSTRUG00000013626	HEY1 (ENSTRUG00000013573)	ENSTRUG00000019876	fam8a1b (ENSTRUG00000025730)	ATXN1 (ENSTRUG00000024789)	ENSTRUG00000013059	mindy3 (ENSTRUG00000012972)	ENSTRUG00000023938	ENSTRUG00000032029	steap4 (ENSTRUG00000012895)	ENSTRUG00000032882	steap4 (ENSTRUG00000012461)	glipr2l (ENSTRUG00000020064) #22	ENSTRUG00000020768	TBRG4 (ENSTRUG00000012262)	DENND3 (ENSTRUG00000030172)	SLC45A4 (ENSTRUG00000011929)	GPR20 (ENSTRUG00000011849)	dgat1b (ENSTRUG00000011659)	SCRT1 (ENSTRUG00000028039)	ENSTRUG00000026908	GALNT1 (ENSTRUG00000030494)	GALNT1 (ENSTRUG00000011442)	ENSTRUG00000011425	FRRS1L (ENSTRUG00000027256)	SCRT1 (ENSTRUG00000011637)	TMEM245 (ENSTRUG00000020814)	FRRS1L (ENSTRUG00000011417)
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Ballan wrasse	MODERN SPECIES	311	upp1 (ENSLBEG00000024391)	ENSLBEG00000024365	HEY1 (ENSLBEG00000024340)	fabp4b (ENSLBEG00000024324)	fam8a1b (ENSLBEG00000024297)	ATXN1 (ENSLBEG00000024264)	ITGA8 (ENSLBEG00000024146)	mindy3 (ENSLBEG00000024051)	ENSLBEG00000023982	ENSLBEG00000023952	ENSLBEG00000023930	ENSLBEG00000023907	ENSLBEG00000023884	steap4 (ENSLBEG00000023841)	steap4 (ENSLBEG00000023805)	glipr2l (ENSLBEG00000023774) #22	ENSLBEG00000023754	ENSLBEG00000023721	DENND3 (ENSLBEG00000023665)	SLC45A4 (ENSLBEG00000023627)	GPR20 (ENSLBEG00000023607)	dgat1b (ENSLBEG00000023530)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.a	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000166273	ENSGT00940000158322.i	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.a	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b
Lumpfish	MODERN SPECIES	7	rbm12bb (ENSCLMG00005013861)	upp1 (ENSCLMG00005013864)	ENSCLMG00005013867	HEY1 (ENSCLMG00005013988)	fabp4b (ENSCLMG00005013991)	fam8a1b (ENSCLMG00005013992)	ATXN1 (ENSCLMG00005013993)	ITGA8 (ENSCLMG00005014007)	mindy3 (ENSCLMG00005014021)	ENSCLMG00005004352	steap4 (ENSCLMG00005004398)	ENSCLMG00005004844	ENSCLMG00005004868	ENSCLMG00005004869	steap4 (ENSCLMG00005004874)	glipr2l (ENSCLMG00005004893) #22	ENSCLMG00005004895	ENSCLMG00005004897	ATP4A (ENSCLMG00005004899)	SLC45A4 (ENSCLMG00005004905)	ENSCLMG00005004914	dgat1b (ENSCLMG00005004920)	SCRT1 (ENSCLMG00005004922)	ino80c (ENSCLMG00005004924)	GALNT1 (ENSCLMG00005004927)	TMEM245 (ENSCLMG00005004938)	FRRS1L (ENSCLMG00005004974)	alg2 (ENSCLMG00005004984)	sec61b (ENSCLMG00005004986)	nr4a3 (ENSCLMG00005004988)	stx17 (ENSCLMG00005004989)
Stickleback	MODERN SPECIES	19	upp1 (ENSGACG00000008684)	ENSGACG00000008708	HEY1 (ENSGACG00000008712)	fabp4b (ENSGACG00000008725)	fam8a1b (ENSGACG00000008744)	ATXN1 (ENSGACG00000008747)	ino80c (ENSGACG00000008750)	ITGA8 (ENSGACG00000008758)	mindy3 (ENSGACG00000008767)	ENSGACG00000008776	ENSGACG00000008780	steap4 (ENSGACG00000008786)	ENSGACG00000008819	ENSGACG00000008828	steap4 (ENSGACG00000008834)	glipr2l (ENSGACG00000008879) #22	ENSGACG00000008888	TBRG4 (ENSGACG00000008909)	ATP4A (ENSGACG00000008911)	DENND3 (ENSGACG00000008925)	SLC45A4 (ENSGACG00000008936)	GPR20 (ENSGACG00000008943)	dgat1b (ENSGACG00000008951)	SCRT1 (ENSGACG00000008982)	GALNT1 (ENSGACG00000008984)	TMEM245 (ENSGACG00000008994)	FRRS1L (ENSGACG00000009004)	alg2 (ENSGACG00000009011)	sec61b (ENSGACG00000009022)	nr4a3 (ENSGACG00000009027)	stx17 (ENSGACG00000009041)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01030000235896.A	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b.a	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00940000178343	ENSGT00550000075033	ENSGT00390000003561
Pike perch	MODERN SPECIES	15	upp1 (ENSSLUG00000007989)	stmn2b (ENSSLUG00000007998)	HEY1 (ENSSLUG00000008002)	fabp4b (ENSSLUG00000008007)	fam8a1b (ENSSLUG00000008010)	ATXN1 (ENSSLUG00000008016)	ITGA8 (ENSSLUG00000008048)	mindy3 (ENSSLUG00000008112)	ENSSLUG00000008123	steap4 (ENSSLUG00000008131)	ENSSLUG00000008143	ENSSLUG00000008185	ENSSLUG00000008208	ENSSLUG00000008226	steap4 (ENSSLUG00000008285)	glipr2l (ENSSLUG00000008940) #22	ENSSLUG00000008950	TBRG4 (ENSSLUG00000008956)	ATP4A (ENSSLUG00000000281)	ENSSLUG00000000436	SLC45A4 (ENSSLUG00000000443)	GPR20 (ENSSLUG00000000450)	dgat1b (ENSSLUG00000000474)	SCRT1 (ENSSLUG00000000531)	ino80c (ENSSLUG00000000539)	ENSSLUG00000000541	GALNT1 (ENSSLUG00000000566)	TMEM245 (ENSSLUG00000000695)	FRRS1L (ENSSLUG00000000741)	alg2 (ENSSLUG00000000746)	sec61b (ENSSLUG00000000751)
Channel bull blenny	MODERN SPECIES	7	HEY1 (ENSCGOG00000023432)	fabp4b (ENSCGOG00000023430)	fam8a1b (ENSCGOG00000023429)	ATXN1 (ENSCGOG00000023427)	ITGA8 (ENSCGOG00000023402)	mindy3 (ENSCGOG00000023365)	ENSCGOG00000023356	ENSCGOG00000023352	steap4 (ENSCGOG00000023347)	ENSCGOG00000023340	ENSCGOG00000023329	ENSCGOG00000023324	ENSCGOG00000023323	ENSCGOG00000023314	steap4 (ENSCGOG00000023291)	glipr2l (ENSCGOG00000023276) #22	ENSCGOG00000023274	ENSCGOG00000023263	ATP4A (ENSCGOG00000013438)	DENND3 (ENSCGOG00000012927)	SLC45A4 (ENSCGOG00000012809)	GPR20 (ENSCGOG00000012807)	dgat1b (ENSCGOG00000012302)	SCRT1 (ENSCGOG00000012277)	ino80c (ENSCGOG00000012274)	GALNT1 (ENSCGOG00000012241)	TMEM245 (ENSCGOG00000011816)	FRRS1L (ENSCGOG00000011806)	ENSCGOG00000011803	alg2 (ENSCGOG00000011801)	sec61b (ENSCGOG00000011791)
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
Gilthead seabream	MODERN SPECIES	8	ATXN1 (ENSSAUG00010016968)	ITGA8 (ENSSAUG00010001756)	mindy3 (ENSSAUG00010001945)	ENSSAUG00010001993	ENSSAUG00010001998	ENSSAUG00010002000	steap4 (ENSSAUG00010002002)	ENSSAUG00010002010	ENSSAUG00010002022	ENSSAUG00010002029	ENSSAUG00010002031	ENSSAUG00010002035	ENSSAUG00010002044	ENSSAUG00010002074	steap4 (ENSSAUG00010002101)	glipr2l (ENSSAUG00010002737) #22	ENSSAUG00010002745	TBRG4 (ENSSAUG00010002751)	ATP4A (ENSSAUG00010002845)	DENND3 (ENSSAUG00010004817)	ino80c (ENSSAUG00010004837)	SLC45A4 (ENSSAUG00010004845)	GPR20 (ENSSAUG00010004866)	dgat1b (ENSSAUG00010004878)	ENSSAUG00010004898	SCRT1 (ENSSAUG00010004900)	ino80c (ENSSAUG00010004902)	GALNT1 (ENSSAUG00010004931)	TMEM245 (ENSSAUG00010005693)	FRRS1L (ENSSAUG00010006047)	alg2 (ENSSAUG00010006050)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000157781	ENSGT01030000234597.a.b.b.e.b.e	ENSGT00940000157068.d	ENSGT00940000164547.b.b	ENSGT00390000007346.a	ENSGT00390000005939.a.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.r	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.b	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.a.a.a.a	ENSGT01100000263515.a.b.a.b.b.k.a.a.b.b	ENSGT00390000008042.B.q	ENSGT00390000020276 #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000160297	ENSGT00940000155784.C.u.a	ENSGT00950000182914.a.a.a.c.a	ENSGT01040000240444.B.b	ENSGT00950000183081.b.i.a	ENSGT00940000154491.c.b.a	ENSGT00390000014303	ENSGT00940000154732.b	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a
European seabass	MODERN SPECIES	6	rbm12bb (ENSDLAG00005026865)	ENSDLAG00005010253	ENSDLAG00005010174	ENSDLAG00005010162	ENSDLAG00005010150	ENSDLAG00005010143	ENSDLAG00005010134	ENSDLAG00005009825	ENSDLAG00005009691	ENSDLAG00005009686	steap4 (ENSDLAG00005009653)	ENSDLAG00005009643	ENSDLAG00005009637	ENSDLAG00005009621	steap4 (ENSDLAG00005009426)	glipr2l (ENSDLAG00005027280) #22	ENSDLAG00005009398	ENSDLAG00005009384	ENSDLAG00005009282	ENSDLAG00005009028	ENSDLAG00005008955	ENSDLAG00005008937	dgat1b (ENSDLAG00005008165)	ENSDLAG00005029303	ino80c (ENSDLAG00005030102)	ENSDLAG00005008043	ENSDLAG00005007462	alg2 (ENSDLAG00005007400)	sec61b (ENSDLAG00005007385)	nr4a3 (ENSDLAG00005034039)	ENSDLAG00005007361
Large yellow croaker	MODERN SPECIES	484	rbm12bb (ENSLCRG00005007426)	ENSLCRG00005007424	upp1 (ENSLCRG00005007421)	ENSLCRG00005007418	HEY1 (ENSLCRG00005007416)	fabp4b (ENSLCRG00005007413)	fam8a1b (ENSLCRG00005007412)	ATXN1 (ENSLCRG00005007408)	ITGA8 (ENSLCRG00005007394)	mindy3 (ENSLCRG00005007377)	ENSLCRG00005007366	steap4 (ENSLCRG00005007351)	ENSLCRG00005007346	ENSLCRG00005007342	steap4 (ENSLCRG00005007305)	glipr2l (ENSLCRG00005007299) #22	ENSLCRG00005007298	TBRG4 (ENSLCRG00005007295)	ATP4A (ENSLCRG00005006456)	DENND3 (ENSLCRG00005006170)	SLC45A4 (ENSLCRG00005006117)	GPR20 (ENSLCRG00005006107)	dgat1b (ENSLCRG00005006106)	SCRT1 (ENSLCRG00005006103)	ino80c (ENSLCRG00005006098)	GALNT1 (ENSLCRG00005006017)	TMEM245 (ENSLCRG00005005954)	FRRS1L (ENSLCRG00005005939)	sec61b (ENSLCRG00005005933)	alg2 (ENSLCRG00005005925)	nr4a3 (ENSLCRG00005005922)
Cod	DUPLICATION
Cod	MODERN SPECIES	19	rmi1 (ENSGMOG00000010204)	hnrnpk (ENSGMOG00000010184)	zgc:136564 (ENSGMOG00000010172)	ENSGMOG00000031877	gkap1 (ENSGMOG00000010130)	IDNK (ENSGMOG00000029637)	FRMD3 (ENSGMOG00000010103)	ENSGMOG00000032171	ADGRD2 (ENSGMOG00000009363)	NR5A1 (ENSGMOG00000009375)	nr6a1a (ENSGMOG00000008794)	OLFML2A (ENSGMOG00000008809)	ENSGMOG00000022914	ENSGMOG00000024444	ENSGMOG00000037094	ENSGMOG00000006384 #22	ENSGMOG00000027453	ENSGMOG00000024044	tubb2b (ENSGMOG00000006371)	ENSGMOG00000034253	ENSGMOG00000036294	ccn1l2 (ENSGMOG00000029328)	ENSGMOG00000006303	ENSGMOG00000023633	nelfb (ENSGMOG00000019424)	ENSGMOG00000036013	arrdc1a (ENSGMOG00000012972)	ehmt1a (ENSGMOG00000007913)	cacna1ba (ENSGMOG00000030232)	ENSGMOG00000031437	man1b1b (ENSGMOG00000014595)
Cod	MODERN SPECIES	2	ENSGMOG00000026370	CREB5 (ENSGMOG00000014131)	cpvl (ENSGMOG00000014089)	ENSGMOG00000027655	ENSGMOG00000026655	ENSGMOG00000030105	ENSGMOG00000004325	ENSGMOG00000004295	ENSGMOG00000032740	ENSGMOG00000014145	ENSGMOG00000028624	ENSGMOG00000016215	ENSGMOG00000012039	ENSGMOG00000023251	ENSGMOG00000034945	glipr2l (ENSGMOG00000016072) #22	ENSGMOG00000031680	ENSGMOG00000016100	ENSGMOG00000008535	ENSGMOG00000008551	ENSGMOG00000033521	ENSGMOG00000025191	ENSGMOG00000023405	ENSGMOG00000037061	ENSGMOG00000026151	ITGA10 (ENSGMOG00000018921)	polr3c (ENSGMOG00000018937)	rnf115a (ENSGMOG00000018949)	ENSGMOG00000018954	dap3 (ENSGMOG00000018965)	ENSGMOG00000031890
Protacanthopterygii	ANCESTRAL SPECIES	17	ENSGT00940000163383	ENSGT01000000215397.A	ENSGT00940000165424.a.b.b	ENSGT00550000074961.a	ENSGT00940000153772.B	ENSGT00390000016384.m	ENSGT00390000016384.l.b	ENSGT00940000157194	ENSGT00940000164697.b	ENSGT00940000154645.B	ENSGT00940000160451	ENSGT00390000016526	ENSGT00390000008042.B.p	ENSGT01100000263515.a.b.a.b.b.k.a.a.b	ENSGT00390000008042.B.o	ENSGT00390000020276 #22	ENSGT00940000154394.b.a.a.a.a.a.b	ENSGT00620000089226	ENSGT00940000165492.a.a	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000164907.b.b	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00940000165492.b	ENSGT00940000154394.a.e.b	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000164907.b.a	ENSGT00940000155151.a.a.a	ENSGT00530000064286
Northern pike	DUPLICATION
Northern pike	DUPLICATION
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	13	gstt1 (ENSELUG00000020605)	p2rx4a (ENSELUG00000020578)	ppp6c (ENSELUG00000020549)	SCAI (ENSELUG00000020522)	arpc5lb (ENSELUG00000020487)	rpl35 (ENSELUG00000020470)	ENSELUG00000020436	ENSELUG00000020427	ENSELUG00000020421	ENSELUG00000020415	ENSELUG00000020408	ENSELUG00000033861	ncs1a (ENSELUG00000032344)	gpr107 (ENSELUG00000020299)	fpgs (ENSELUG00000020278)	ENSELUG00000027081 #22	ENSELUG00000020184 #22	ENSELUG00000024741 #22	ENSELUG00000030475	TUBB4B (ENSELUG00000020007)	lmo4a (ENSELUG00000019991)	ccn1l1 (ENSELUG00000019976)	pole3 (ENSELUG00000001285)	rpl12 (ENSELUG00000019938)	lrsam1 (ENSELUG00000019893)	ntmt1 (ENSELUG00000019833)	ENSELUG00000034166	ier5l (ENSELUG00000019814)	ptpa (ENSELUG00000000869)	crata (ENSELUG00000019745)	cdk9 (ENSELUG00000019692)
Northern pike	MODERN SPECIES	13	ppp6c (ENSELUG00000020549)	SCAI (ENSELUG00000020522)	arpc5lb (ENSELUG00000020487)	rpl35 (ENSELUG00000020470)	ENSELUG00000020436	ENSELUG00000020427	ENSELUG00000020421	ENSELUG00000020415	ENSELUG00000020408	ENSELUG00000033861	ncs1a (ENSELUG00000032344)	gpr107 (ENSELUG00000020299)	fpgs (ENSELUG00000020278)	ENSELUG00000027081 #22	ENSELUG00000020184 #22	ENSELUG00000024741 #22	ENSELUG00000030475	TUBB4B (ENSELUG00000020007)	lmo4a (ENSELUG00000019991)	ccn1l1 (ENSELUG00000019976)	pole3 (ENSELUG00000001285)	rpl12 (ENSELUG00000019938)	lrsam1 (ENSELUG00000019893)	ntmt1 (ENSELUG00000019833)	ENSELUG00000034166	ier5l (ENSELUG00000019814)	ptpa (ENSELUG00000000869)	crata (ENSELUG00000019745)	cdk9 (ENSELUG00000019692)	CRB2 (ENSELUG00000019522)	DENND1A (ENSELUG00000000844)
Northern pike	MODERN SPECIES	13	p2rx4a (ENSELUG00000020578)	ppp6c (ENSELUG00000020549)	SCAI (ENSELUG00000020522)	arpc5lb (ENSELUG00000020487)	rpl35 (ENSELUG00000020470)	ENSELUG00000020436	ENSELUG00000020427	ENSELUG00000020421	ENSELUG00000020415	ENSELUG00000020408	ENSELUG00000033861	ncs1a (ENSELUG00000032344)	gpr107 (ENSELUG00000020299)	fpgs (ENSELUG00000020278)	ENSELUG00000027081 #22	ENSELUG00000020184 #22	ENSELUG00000024741 #22	ENSELUG00000030475	TUBB4B (ENSELUG00000020007)	lmo4a (ENSELUG00000019991)	ccn1l1 (ENSELUG00000019976)	pole3 (ENSELUG00000001285)	rpl12 (ENSELUG00000019938)	lrsam1 (ENSELUG00000019893)	ntmt1 (ENSELUG00000019833)	ENSELUG00000034166	ier5l (ENSELUG00000019814)	ptpa (ENSELUG00000000869)	crata (ENSELUG00000019745)	cdk9 (ENSELUG00000019692)	CRB2 (ENSELUG00000019522)
Northern pike	MODERN SPECIES	19	ENSELUG00000007806	ENSELUG00000007782	ENSELUG00000007747	ADAM15 (ENSELUG00000000280)	ENSELUG00000007660	nudt17 (ENSELUG00000007620)	mtx1a (ENSELUG00000007589)	thbs3a (ENSELUG00000007551)	ENSELUG00000007496	hjv (ENSELUG00000001258)	ITGA8 (ENSELUG00000007486)	mindy3 (ENSELUG00000007436)	ENSELUG00000007398	ENSELUG00000027958	steap4 (ENSELUG00000007369)	glipr2l (ENSELUG00000007347) #22	ENSELUG00000026489	TBRG4 (ENSELUG00000007298)	pomgnt2 (ENSELUG00000007283)	GASK1A (ENSELUG00000007274)	entpd3 (ENSELUG00000007261)	ddc (ENSELUG00000007243)	GRB10 (ENSELUG00000007200)	cobl (ENSELUG00000007124)	ENSELUG00000007028	ENSELUG00000007016	ENSELUG00000024773	CCR8 (ENSELUG00000007000)	ENSELUG00000000232	DNAH5 (ENSELUG00000006849)	ENSELUG00000006760
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	619													ENSGT01030000235896.A	ENSGT00390000008042.B.o.a	ENSGT00390000008042.B.o.b.a	ENSGT00390000020276.kb.a #22	ENSGT00940000161501.b	ENSGT01030000234607.A.a.b.a.c	ENSGT00940000160695.c	ENSGT00420000029769.a.i.b	ENSGT01100000263542.A.d	ENSGT00940000156004.s	ENSGT00940000155909.o.a	ENSGT00530000063608.A.fb	ENSGT01020000230359.A.q	ENSGT01020000230359.B.b.a	ENSGT01020000230359.B.a.o
Salmoninae_a	ANCESTRAL SPECIES	43	ENSGT00940000162489	ENSGT00940000161854.a.d	ENSGT00940000159822.g.b	ENSGT00940000154870.A.a	ENSGT00390000013847.k	ENSGT00950000182919.B.a.g.c	ENSGT00940000159283.c.b.d	ENSGT00950000183112.b.b.q	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.b	ENSGT00940000156737.e.b	ENSGT00940000155958.z	ENSGT00410000028469.e	ENSGT01030000235896.A	ENSGT00390000008042.B.o.a	ENSGT00390000008042.B.o.b.a	ENSGT00390000020276.kb.a #22	ENSGT00940000161501.b	ENSGT01030000234607.A.a.b.a.c	ENSGT00940000160695.c	ENSGT00420000029769.a.j	ENSGT01100000263542.A.d	ENSGT00940000156004.s	ENSGT00940000155909.o.a.b	ENSGT00530000063608.A.fb	ENSGT01020000230359.A.q	ENSGT01020000230359.B.b.a	ENSGT01020000230359.B.a.o	ENSGT00940000154766.b.t.a	ENSGT00940000155533.d.n	ENSGT00940000165364.a.a.o	ENSGT01030000234988.f
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000164158.A.a.e	ENSGT00940000162489	ENSGT00940000161854.a.d	ENSGT00940000159822.g.b	ENSGT00940000154870.A.a	ENSGT00390000013847.k	ENSGT00950000182919.B.a.g.c	ENSGT00940000159283.c.b.d	ENSGT00950000183112.b.b.q	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.b	ENSGT00940000156737.e.b	ENSGT00940000155958.z	ENSGT00410000028469.e	ENSGT00390000008042.B.o.a	ENSGT00390000008042.B.o.b.a	ENSGT00390000020276.kb.a #22	ENSGT00940000161501.b	ENSGT01030000234607.A.a.b.a.c	ENSGT00940000160695.c	ENSGT00420000029769.a.i.b	ENSGT01100000263542.A.d	ENSGT00940000156004.s	ENSGT00940000155909.o.a.b	ENSGT00530000063608.A.fb	ENSGT01020000230359.A.q	ENSGT01020000230359.B.b.a	ENSGT01020000230359.B.a.o	ENSGT00940000154766.b.t.a	ENSGT00940000155533.d.n	ENSGT00940000165364.a.a.o	ENSGT01030000234988.f
Atlantic salmon	MODERN SPECIES	24	zgc:171704 (ENSSSAG00000075087)	ENSSSAG00000075093	ENSSSAG00000075102	ENSSSAG00000075120	ENSSSAG00000002023	nudt17 (ENSSSAG00000002035)	mtx1a (ENSSSAG00000002071)	thbs3a (ENSSSAG00000002381)	hjv (ENSSSAG00000003589)	ENSSSAG00000003604	ENSSSAG00000118012	ENSSSAG00000003653	ENSSSAG00000003814	steap4 (ENSSSAG00000003833)	steap4 (ENSSSAG00000003949)	GAPR1 (ENSSSAG00000004283) #22	ENSSSAG00000089116	ENSSSAG00000004299	ENSSSAG00000004315	pomgnt2 (ENSSSAG00000094248)	ENSSSAG00000099606	entpd3 (ENSSSAG00000004418)	ddc (ENSSSAG00000004522)	ENSSSAG00000004760	cobl (ENSSSAG00000006147)	ENSSSAG00000115914	ENSSSAG00000006300	ENSSSAG00000092363	ENSSSAG00000007499	g6fl (ENSSSAG00000007509)	abhd16a (ENSSSAG00000007551)
River trout	MODERN SPECIES	22	zgc:171704 (ENSSTUG00000017141)	ENSSTUG00000017157	s100v1 (ENSSTUG00000017247)	ENSSTUG00000017256	ENSSTUG00000017473	nudt17 (ENSSTUG00000006970)	mtx1a (ENSSTUG00000007009)	thbs3a (ENSSTUG00000007114)	hjv (ENSSTUG00000008375)	ITGA8 (ENSSTUG00000008399)	ENSSTUG00000009416	mindy3 (ENSSTUG00000009562)	ENSSTUG00000010003	ENSSTUG00000010024	steap4 (ENSSTUG00000010050)	glipr2l (ENSSTUG00000010297) #22	ENSSTUG00000010305	TBRG4 (ENSSTUG00000010327)	pomgnt2 (ENSSTUG00000010390)	GASK1A (ENSSTUG00000010395)	entpd3 (ENSSTUG00000010411)	ENSSTUG00000010479	ddc (ENSSTUG00000010498)	GRB10 (ENSSTUG00000010811)	cobl (ENSSTUG00000011846)	ENSSTUG00000011872	ENSSTUG00000011880	CCR8 (ENSSTUG00000011887)	DNAH5 (ENSSTUG00000012901)	ENSSTUG00000013673	g6fl (ENSSTUG00000013694)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000156361.A.a	ENSGT00730000111394.e	ENSGT00940000176166.d	ENSGT00940000161854.a.c	ENSGT00940000159822.g.b	ENSGT00940000154870.A.a	ENSGT00390000013847.k	ENSGT00950000182919.B.a.g.c	ENSGT00940000159283.c.b.d	ENSGT00950000183112.b.b.q	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.b	ENSGT00940000156737.e.b	ENSGT00940000155958.z	ENSGT00410000028469.e	ENSGT00390000008042.B.o.b.a	ENSGT00390000020276.kb.a #22	ENSGT00940000161501.b	ENSGT01030000234607.A.a.b.a.c	ENSGT00940000160695.c	ENSGT00420000029769.a.j.a	ENSGT01100000263542.A.d	ENSGT00940000156004.s	ENSGT00940000155909.o.a.b	ENSGT00530000063608.A.fb	ENSGT01020000230359.A.q	ENSGT01020000230359.B.b.a	ENSGT01020000230359.B.a.o	ENSGT00940000154766.b.t.a	ENSGT00940000155533.d.n	ENSGT00940000165364.a.a.o	ENSGT01030000234988.f
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000022086	nudt17 (ENSOMYG00000022060)	mtx1a (ENSOMYG00000021983)	ENSOMYG00000054327	thbs3a (ENSOMYG00000017197)	hjv (ENSOMYG00000016949)	ENSOMYG00000016926	ENSOMYG00000016818	mindy3 (ENSOMYG00000016726)	ENSOMYG00000016708	ENSOMYG00000070004	ENSOMYG00000014729	ENSOMYG00000066702	steap4 (ENSOMYG00000016600)	ENSOMYG00000052082	glipr2l (ENSOMYG00000016567) #22	ENSOMYG00000016562	ENSOMYG00000016509	ENSOMYG00000071367	pomgnt2 (ENSOMYG00000016503)	ENSOMYG00000016494	entpd3 (ENSOMYG00000016443)	ddc (ENSOMYG00000016252)	ENSOMYG00000015405	cobl (ENSOMYG00000015309)	ENSOMYG00000015285	ENSOMYG00000015277	ENSOMYG00000015272	ENSOMYG00000046371	ENSOMYG00000013752	ENSOMYG00000013009
Oncorhynchus_a	ANCESTRAL SPECIES	26	ENSGT00940000164158.A.a.e	ENSGT00940000156361.A.a	ENSGT00940000176166.d	ENSGT00940000161854.a.c	ENSGT00940000159822.g.b	ENSGT00940000154870.A.a	ENSGT00390000013847.k	ENSGT00950000182919.B.a.g.c	ENSGT00940000159283.c.b.d	ENSGT00950000183112.b.b.q	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.b	ENSGT00940000156737.e.b	ENSGT00940000155958.z	ENSGT00410000028469.e	ENSGT00390000008042.B.o.b.a	ENSGT00390000020276.kb.a #22	ENSGT00940000161501.b	ENSGT01030000234607.A.a.b.a.c	ENSGT00940000160695.c	ENSGT00420000029769.a.j.a	ENSGT01100000263542.A.d	ENSGT00940000156004.s	ENSGT00940000155909.o.a.b	ENSGT00530000063608.A.fb	ENSGT01020000230359.A.q	ENSGT01020000230359.B.b.a	ENSGT01020000230359.B.a.o	ENSGT00940000154766.b.t.a	ENSGT00940000155533.d.n	ENSGT00940000165364.a.a.o	ENSGT01030000234988.f
Coho salmon	MODERN SPECIES	4	ENSOKIG00005016368	s100v1 (ENSOKIG00005016385)	ENSOKIG00005016464	ENSOKIG00005017693	nudt17 (ENSOKIG00005017741)	mtx1a (ENSOKIG00005017760)	thbs3a (ENSOKIG00005018032)	hjv (ENSOKIG00005023003)	ITGA8 (ENSOKIG00005023068)	ENSOKIG00005023390	MINDY3 (ENSOKIG00005023486)	ENSOKIG00005024569	ENSOKIG00005024596	steap4 (ENSOKIG00005024678)	ENSOKIG00005025072	glipr2l (ENSOKIG00005025079) #22	ENSOKIG00005025122	TBRG4 (ENSOKIG00005025143)	pomgnt2 (ENSOKIG00005025268)	GASK1A (ENSOKIG00005025288)	entpd3 (ENSOKIG00005025311)	ddc (ENSOKIG00005025414)	GRB10 (ENSOKIG00005026074)	cobl (ENSOKIG00005028517)	ENSOKIG00005028603	ENSOKIG00005028615	CCR8 (ENSOKIG00005028629)	ENSOKIG00005028645	ENSOKIG00005028731	DNAH5 (ENSOKIG00005030427)	ENSOKIG00005031297
Huchen	MODERN SPECIES	2347													ENSHHUG00000051106	steap4 (ENSHHUG00000051109)	steap4 (ENSHHUG00000051124)	glipr2l (ENSHHUG00000051146) #22	ENSHHUG00000051153	TBRG4 (ENSHHUG00000051169)
Salmoninae	ANCESTRAL SPECIES	485			ENSGT00390000013847.l	ENSGT00950000182919.B.a.g.d	ENSGT00940000159283.c.b.c	ENSGT00950000183112.b.b.r	ENSGT00940000156737.e.a.a.a	ENSGT00940000156737.e.a.b	ENSGT00940000155958.y	ENSGT00410000028469.f	ENSGT00940000160479	ENSGT00390000008042.B.p	ENSGT01100000263515.a.b.a.b.b.k.a.a.b	ENSGT00390000008042.B.o.b.b.a	ENSGT00390000008042.B.o.b.b.b.b	ENSGT00390000020276.kb.b #22	ENSGT00940000161501.a	ENSGT01030000234607.A.a.b.a.d	ENSGT00940000160695.d	ENSGT00420000029769.a.j	ENSGT00420000029769.a.i.a	ENSGT01100000263542.A.c	ENSGT00940000156004.t
Huchen	MODERN SPECIES	1178												ENSHHUG00000016108	ENSHHUG00000016128	steap4 (ENSHHUG00000016140)	ENSHHUG00000016147	glipr2l (ENSHHUG00000016164) #22	ENSHHUG00000016167	TBRG4 (ENSHHUG00000016188)	GASK1A (ENSHHUG00000016213)	entpd3 (ENSHHUG00000016218)	ENSHHUG00000016241	ddc (ENSHHUG00000016257)
Salmoninae_a	ANCESTRAL SPECIES	96	ENSGT00940000161854.a.c	ENSGT00940000153269.a.a	ENSGT00940000153269.a.b	ENSGT00940000159822.g.a	ENSGT00390000013847.l	ENSGT00950000182919.B.a.g.d	ENSGT00940000159283.c.b.c	ENSGT00950000183112.b.b.r	ENSGT00940000156737.e.a.b	ENSGT00940000155958.y	ENSGT00410000028469.f	ENSGT00940000160479	ENSGT00390000008042.B.p	ENSGT01100000263515.a.b.a.b.b.k.a.a.b	ENSGT00390000008042.B.o.b.b.a	ENSGT00390000020276.kb.b #22	ENSGT00940000161501.a	ENSGT01030000234607.A.a.b.a.d	ENSGT00940000160695.d	ENSGT00420000029769.a.i.a	ENSGT01100000263542.A.c	ENSGT00940000156004.t	ENSGT00940000155909.o.a.a	ENSGT00530000063608.A.gb	ENSGT01020000230359.A.r	ENSGT01020000230359.B.b.b	ENSGT01020000230359.B.a.p	ENSGT00940000154766.b.t.b	ENSGT00940000155533.d.m	ENSGT00390000003062	ENSGT00940000165364.a.a.p
Oncorhynchus	ANCESTRAL SPECIES	61	ENSGT00940000153269.a.a	ENSGT00940000153269.a.b	ENSGT00940000159822.g.a	ENSGT00390000013847.l	ENSGT00950000182919.B.a.g.d	ENSGT00940000159283.c.b.c	ENSGT00950000183112.b.b.r	ENSGT00940000156737.e.a.b	ENSGT00940000156737.e.a.a.a	ENSGT00940000155958.y	ENSGT00410000028469.f	ENSGT00940000160479.i	ENSGT00390000008042.B.p	ENSGT01030000235896.A	ENSGT00390000008042.B.o.a	ENSGT00390000020276.kb.b #22	ENSGT00940000161501.a	ENSGT01030000234607.A.a.b.a.d	ENSGT00940000160695.d	ENSGT00420000029769.a.j.b	ENSGT01100000263542.A.c	ENSGT00940000156004.t	ENSGT00940000155909.o.a.a	ENSGT00530000063608.A.gb	ENSGT01020000230359.A.r	ENSGT01020000230359.B.b.b	ENSGT01020000230359.B.a.p	ENSGT00940000154766.b.t.b	ENSGT00940000155533.d.m	ENSGT00390000003062	ENSGT00940000165364.a.a.p
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000023196	ENSOMYG00000023220	ENSOMYG00000022954	nudt17 (ENSOMYG00000022899)	mtx1a (ENSOMYG00000022832)	thbs3a (ENSOMYG00000015690)	hjv (ENSOMYG00000015181)	ENSOMYG00000075425	ENSOMYG00000014365	mindy3 (ENSOMYG00000014198)	ENSOMYG00000014164	ENSOMYG00000054624	ENSOMYG00000014151	steap4 (ENSOMYG00000014128)	steap4 (ENSOMYG00000014102)	ENSOMYG00000014084 #22	ENSOMYG00000070680	ENSOMYG00000014002	pomgnt2 (ENSOMYG00000013991)	ENSOMYG00000013985	entpd3 (ENSOMYG00000013925)	ddc (ENSOMYG00000013814)	ENSOMYG00000012299	ENSOMYG00000053099	cobl (ENSOMYG00000012164)	ENSOMYG00000012147	ENSOMYG00000012144	ENSOMYG00000012124	ENSOMYG00000008537	ENSOMYG00000005659	ENSOMYG00000066708
Oncorhynchus_a	ANCESTRAL SPECIES	68	ENSGT00940000161854.a.d	ENSGT00940000153269.a.a	ENSGT00940000153269.a.b	ENSGT00940000159822.g.a	ENSGT00390000013847.l	ENSGT00950000182919.B.a.g.d	ENSGT00940000159283.c.b.c	ENSGT00950000183112.b.b.r	ENSGT00940000156737.e.a.b	ENSGT00940000155958.y	ENSGT00410000028469.f	ENSGT00940000160479.i	ENSGT00390000008042.B.p	ENSGT01030000235896.A	ENSGT00390000008042.B.o.a	ENSGT00390000020276.kb.b #22	ENSGT00940000161501.a	ENSGT01030000234607.A.a.b.a.d	ENSGT00940000160695.d	ENSGT00420000029769.a.j.b	ENSGT01100000263542.A.c	ENSGT00940000156004.t	ENSGT00940000155909.o.a.a	ENSGT00530000063608.A.gb	ENSGT01020000230359.A.r	ENSGT01020000230359.B.b.b	ENSGT01020000230359.B.a.p	ENSGT01030000238767	ENSGT00940000154766.b.t.b	ENSGT00940000155533.d.m	ENSGT00390000003062
Chinook salmon	MODERN SPECIES	22	zgc:171704 (ENSOTSG00005015664)	ENSOTSG00005015662	s100v1 (ENSOTSG00005015660)	dcst2 (ENSOTSG00005015659)	ENSOTSG00005015653	ADAM15 (ENSOTSG00005015649)	nudt17 (ENSOTSG00005015647)	mtx1a (ENSOTSG00005015644)	thbs3a (ENSOTSG00005010576)	hjv (ENSOTSG00005010558)	ITGA8 (ENSOTSG00005010534)	mindy3 (ENSOTSG00005010395)	ENSOTSG00005010391	ENSOTSG00005010389	steap4 (ENSOTSG00005010313)	glipr2l (ENSOTSG00005010302) #22	ENSOTSG00005010301	ENSOTSG00005010298	pomgnt2 (ENSOTSG00005010297)	GASK1A (ENSOTSG00005010296)	entpd3 (ENSOTSG00005010295)	ddc (ENSOTSG00005010107)	GRB10 (ENSOTSG00005006360)	cobl (ENSOTSG00005006347)	ENSOTSG00005006341	ENSOTSG00005006340	CCR8 (ENSOTSG00005006338)	ENSOTSG00005006317	ENSOTSG00005004852	DNAH5 (ENSOTSG00005004351)	ENSOTSG00005004335
Coho salmon	MODERN SPECIES	11	ENSOKIG00005014234	ENSOKIG00005014209	ADAM15 (ENSOKIG00005014181)	nudt17 (ENSOKIG00005014168)	ENSOKIG00005014162	mtx1a (ENSOKIG00005014100)	thbs3a (ENSOKIG00005009189)	hjv (ENSOKIG00005008995)	ITGA8 (ENSOKIG00005008693)	mindy3 (ENSOKIG00005008080)	ENSOKIG00005008046	ENSOKIG00005008038	ENSOKIG00005008033	ENSOKIG00005007943	steap4 (ENSOKIG00005007557)	glipr2l (ENSOKIG00005007531) #22	ENSOKIG00005007516	TBRG4 (ENSOKIG00005007453)	ENSOKIG00005007451	pomgnt2 (ENSOKIG00005007447)	GASK1A (ENSOKIG00005007442)	entpd3 (ENSOKIG00005007409)	ddc (ENSOKIG00005007280)	ENSOKIG00005007246	ENSOKIG00005007237	GRB10 (ENSOKIG00005004728)	cobl (ENSOKIG00005004553)	ENSOKIG00005004531	ENSOKIG00005004519	CCR8 (ENSOKIG00005004502)	ENSOKIG00005004485
Salmo	ANCESTRAL SPECIES	32	ENSGT00940000161854.a.c	ENSGT00940000153269.a.a	ENSGT00940000153269.a.b	ENSGT00940000159822.g.a	ENSGT00390000013847.l	ENSGT00950000182919.B.a.g.d	ENSGT00940000159283.c.b.c	ENSGT00950000183112.b.b.r	ENSGT00940000156737.e.a.b	ENSGT00940000155958.y	ENSGT00410000028469.f	ENSGT00940000160479	ENSGT00390000008042.B.p	ENSGT01100000263515.a.b.a.b.b.k.a.a.b	ENSGT00390000008042.B.o.b.b.a.a	ENSGT00390000020276.kb.b #22	ENSGT00940000161501.a	ENSGT01030000234607.A.a.b.a.d	ENSGT00940000160695.d	ENSGT00420000029769.a.i.a	ENSGT01100000263542.A.c	ENSGT00940000156004.t	ENSGT00940000155909.o.a.a	ENSGT00530000063608.A.gb	ENSGT01020000230359.A.r	ENSGT01020000230359.B.b.b	ENSGT01020000230359.B.a.p	ENSGT00940000154766.b.t.b	ENSGT00940000155533.d.m	ENSGT00390000003062	ENSGT00940000165364.a.a.p
River trout	MODERN SPECIES	30	s100v1 (ENSSTUG00000046319)	dcst2 (ENSSTUG00000046308)	ENSSTUG00000046288	ADAM15 (ENSSTUG00000046241)	nudt17 (ENSSTUG00000046220)	mtx1a (ENSSTUG00000046205)	thbs3a (ENSSTUG00000043902)	hjv (ENSSTUG00000043829)	ITGA8 (ENSSTUG00000043600)	mindy3 (ENSSTUG00000043103)	ENSSTUG00000043051	ENSSTUG00000043020	ENSSTUG00000042955	ENSSTUG00000042905	steap4 (ENSSTUG00000042311)	glipr2l (ENSSTUG00000042236) #22	ENSSTUG00000042211	TBRG4 (ENSSTUG00000042159)	pomgnt2 (ENSSTUG00000042138)	GASK1A (ENSSTUG00000042120)	entpd3 (ENSSTUG00000042104)	ENSSTUG00000042101	ddc (ENSSTUG00000041458)	GRB10 (ENSSTUG00000039099)	cobl (ENSSTUG00000038969)	ENSSTUG00000038964	ENSSTUG00000038954	CCR8 (ENSSTUG00000038949)	ENSSTUG00000034091	DNAH5 (ENSSTUG00000032873)	ENSSTUG00000032824
Atlantic salmon	MODERN SPECIES	11	nudt17 (ENSSSAG00000045506)	mtx1a (ENSSSAG00000045447)	thbs3 (ENSSSAG00000043508)	hjv (ENSSSAG00000043429)	ENSSSAG00000042854	mindy3 (ENSSSAG00000042363)	ENSSSAG00000042339	ENSSSAG00000097179	ENSSSAG00000106004	ENSSSAG00000042332	steap4 (ENSSSAG00000042298)	ENSSSAG00000042248	steap4 (ENSSSAG00000042215)	ENSSSAG00000042166	steap4 (ENSSSAG00000041680)	ENSSSAG00000089316 #22	ENSSSAG00000083385	ENSSSAG00000041485	pomgnt2 (ENSSSAG00000092435)	ENSSSAG00000041471	entpd3 (ENSSSAG00000041445)	ddc (ENSSSAG00000039933)	ENSSSAG00000037403	cobl (ENSSSAG00000036348)	ENSSSAG00000036208	ENSSSAG00000035944	ENSSSAG00000089081	ENSSSAG00000072408	ENSSSAG00000101335	ENSSSAG00000120311	ENSSSAG00000111507
Salmoninae	ANCESTRAL SPECIES	134	ENSGT00940000166931.f	ENSGT00940000161345.c	ENSGT00940000156340.a.d.c	ENSGT00440000038585.c.c	ENSGT00940000153181.m.a	ENSGT00940000158674.h	ENSGT00530000063187.A.h	ENSGT00390000000224.j	ENSGT00550000074961.b.d	ENSGT00390000009566.g	ENSGT00940000158501.d.a.c	ENSGT00390000016384.l.a	ENSGT00940000167171	ENSGT00940000160451	ENSGT00390000016526	ENSGT00390000020276.lb #22	ENSGT00940000154394.b.a.a.a.a.a.b	ENSGT00620000089226	ENSGT00940000164907.b.a.c	ENSGT00940000155151.a.a.a.d	ENSGT00940000154394.b.a.b.q	ENSGT00980000199397.a	ENSGT00390000004692.d.a.n	ENSGT00940000165492.a.a	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000164907.b.b.d.a	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00530000064286.d
Huchen	MODERN SPECIES	981																ENSHHUG00000036372 #22	tubb2b (ENSHHUG00000036114)	ENSHHUG00000036104	ENSHHUG00000036096	ccn1l2 (ENSHHUG00000036086)	FKBP15 (ENSHHUG00000035913)	fgf17 (ENSHHUG00000035891)	ENTPD2 (ENSHHUG00000035881)	nelfb (ENSHHUG00000035705)	ENSHHUG00000035702	ENSHHUG00000035700	ENSHHUG00000035686	ENSHHUG00000035674	ENSHHUG00000035666	cacna1ba (ENSHHUG00000035635)	man1b1b (ENSHHUG00000035597)
Salmoninae_a	ANCESTRAL SPECIES	7	ENSGT00940000161345.c	ENSGT00940000156340.a.d.c	ENSGT00440000038585.c.c	ENSGT01000000220495	ENSGT00940000153181.m.a	ENSGT00940000158674.h	ENSGT00530000063187.A.h	ENSGT00390000000224.j	ENSGT00550000074961.b.d	ENSGT00390000009566.g	ENSGT00940000158501.d.a.c	ENSGT00390000016384.l.a	ENSGT00940000167171	ENSGT00940000160451	ENSGT00390000016526	ENSGT00390000020276.lb #22	ENSGT00940000154394.b.a.a.a.a.a.b	ENSGT00620000089226	ENSGT00940000164907.b.a.c	ENSGT00940000155151.a.a.a.d	ENSGT00940000154394.b.a.b.q	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000164907.b.b.d.a	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00530000064286.d	ENSGT00930000151050	ENSGT00390000008371.b	ENSGT00900000141021.b.a.d.e
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT00940000158633.b.c	ENSGT00940000155841.c.a.f	ENSGT00940000163383	ENSGT01000000215397.A.b	ENSGT00940000165424.a.b.b.b	ENSGT00550000074961.a.d	ENSGT00940000153772.B.k	ENSGT00390000016384.l.b.b	ENSGT00940000168933	ENSGT00940000157194.b	ENSGT00940000157936.k.a	ENSGT00940000153391.c.b.a.j.a.a	ENSGT00940000161534.pb.b	ENSGT00940000158540.z.a	ENSGT00950000183101.a.b.b.a.a.i	ENSGT00390000020276.lb #22	ENSGT00940000154394.b.a.a.a.a.a.b	ENSGT00620000089226	ENSGT00940000164907.b.a.c	ENSGT00940000155151.a.a.a.d	ENSGT00530000064286.c.a	ENSGT00940000167390.c	ENSGT01100000263542.B.b.a.b.e	ENSGT00390000012665.j	ENSGT01080000257442.c.b	ENSGT00940000166440	ENSGT00940000155275.c.b.b.e	ENSGT00940000155422.bb.b	ENSGT00940000157157.b.a.a.e	ENSGT00940000158199.l	ENSGT00940000156724.k
Oncorhynchus_a	ANCESTRAL SPECIES	15	ENSGT00940000158633.b.c	ENSGT00940000155841.c.a.f	ENSGT00940000163383	ENSGT01000000215397.A.b	ENSGT00940000165424.a.b.b.b	ENSGT00550000074961.a.d	ENSGT00940000153772.B.k	ENSGT00390000016384.l.b.b	ENSGT00940000168933	ENSGT00940000157194.b	ENSGT00940000157936.k.a	ENSGT00940000153391.c.b.a.j.a.a	ENSGT00940000161534.pb.b	ENSGT00940000158540.z.a	ENSGT00950000183101.a.b.b.a.a.i	ENSGT00390000020276.lb #22	ENSGT00940000154394.b.a.a.a.a.a.b	ENSGT00940000164907.b.a.c	ENSGT00940000155151.a.a.a.d	ENSGT00530000064286.c.a	ENSGT00940000167390.c	ENSGT01100000263542.B.b.a.b.e	ENSGT00390000012665.j	ENSGT01080000257442.c.b	ENSGT00940000166440	ENSGT00940000155275.c.b.b.e	ENSGT00940000155422.bb.b	ENSGT00940000157157.b.a.a.e	ENSGT00940000158199.l	ENSGT00940000156724.k	ENSGT00390000010743.b.b.d
Chinook salmon	MODERN SPECIES	3	sh3glb2a (ENSOTSG00005043552)	ENSOTSG00005043706	PPP6C (ENSOTSG00005043707)	ENSOTSG00005043708	ENSOTSG00005043709	golga1 (ENSOTSG00005043710)	RPL35 (ENSOTSG00005043711)	ENSOTSG00005043712	olfml2a (ENSOTSG00005043714)	nr6a1a (ENSOTSG00005043717)	ENSOTSG00005043718	nr5a1a (ENSOTSG00005043720)	ADGRD2 (ENSOTSG00005043732)	lhx2b (ENSOTSG00005043733)	ENSOTSG00005043734	ENSOTSG00005044025 #22	ENSOTSG00005044031	ENSOTSG00005044033	ccn1l2 (ENSOTSG00005044034)	FKBP15 (ENSOTSG00005044042)	fgf17 (ENSOTSG00005044537)	ENTPD2 (ENSOTSG00005044538)	nelfb (ENSOTSG00005044540)	arrdc1a (ENSOTSG00005045057)	cacna1ba (ENSOTSG00005045082)	man1b1b (ENSOTSG00005046690)	notch1b (ENSOTSG00005009635)	inpp5e (ENSOTSG00005009781)	pmpca (ENSOTSG00005009796)	ENSOTSG00005010937	PTGS1 (ENSOTSG00005010939)
Coho salmon	MODERN SPECIES	28	PIP5KL1 (ENSOKIG00005044754)	sh3glb2a (ENSOKIG00005044772)	ENSOKIG00005044814	ENSOKIG00005044822	ENSOKIG00005044831	PPP6C (ENSOKIG00005044835)	golga1 (ENSOKIG00005044844)	RPL35 (ENSOKIG00005044889)	ENSOKIG00005044913	olfml2a (ENSOKIG00005044924)	nr6a1a (ENSOKIG00005044956)	nr5a1a (ENSOKIG00005045103)	ADGRD2 (ENSOKIG00005045172)	LHX2 (ENSOKIG00005045190)	ENSOKIG00005045302	ENSOKIG00005045953 #22	ENSOKIG00005045958	ENSOKIG00005045969	ENSOKIG00005045974	FKBP15 (ENSOKIG00005046028)	fgf17 (ENSOKIG00005046602)	ENTPD2 (ENSOKIG00005046613)	nelfb (ENSOKIG00005046649)	ENSOKIG00005046731	arrdc1a (ENSOKIG00005046737)	cacna1ba (ENSOKIG00005047148)	MAN1B1 (ENSOKIG00005049871)	notch1b (ENSOKIG00005049913)	inpp5e (ENSOKIG00005050049)	pmpca (ENSOKIG00005050081)	PTGS1 (ENSOKIG00005050217)
Rainbow trout	MODERN SPECIES	2	ENSOMYG00000040716	ENSOMYG00000040708	ENSOMYG00000040703	ENSOMYG00000040695	GOLGA1 (ENSOMYG00000040675)	ENSOMYG00000040657	RPL35 (ENSOMYG00000055069)	ENSOMYG00000076142	ENSOMYG00000040645	olfml2a (ENSOMYG00000040641)	NR6A1 (ENSOMYG00000040636)	ENSOMYG00000068514	ftz-f1 (ENSOMYG00000040590)	ENSOMYG00000040543	ENSOMYG00000039974	ENSOMYG00000039750 #22	ENSOMYG00000039709	ENSOMYG00000039656	ENSOMYG00000039634	ENSOMYG00000039622	ENSOMYG00000039134	ENSOMYG00000038777	entpd2a.1 (ENSOMYG00000038734)	nelfb (ENSOMYG00000038706)	ENSOMYG00000038658	ENSOMYG00000038647	arrdc1a (ENSOMYG00000038634)	cacna1ba (ENSOMYG00000011876)	man1b1b (ENSOMYG00000009283)	ENSOMYG00000008306	ENSOMYG00000056878
Salmo	ANCESTRAL SPECIES		ENSGT00940000161345.c	ENSGT00940000156340.a.d.c	ENSGT00440000038585.c.c	ENSGT01000000220495	ENSGT01100000263505.b.b.a.b.a.a.a.b.a	ENSGT00940000153181.m.a	ENSGT00940000158674.h	ENSGT00530000063187.A.h	ENSGT00390000000224.j	ENSGT00550000074961.b.d	ENSGT00390000009566.g	ENSGT00940000158501.d.a.c	ENSGT00390000016384.l.a	ENSGT00940000160451	ENSGT00390000016526	ENSGT00390000020276.lb #22	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000164907.b.b.d.a	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00530000064286.d	ENSGT00930000151050	ENSGT00390000008371.b	ENSGT00900000141021.b.a.d.e	ENSGT00390000011500.k	ENSGT01060000248556.A.a.a.a.b.a	ENSGT00940000167707	ENSGT00940000155373	ENSGT00940000160615.a.b
River trout	MODERN SPECIES	39	sh3glb2a (ENSSTUG00000024121)	ENSSTUG00000024083	ENSSTUG00000024066	ENSSTUG00000024043	PPP6C (ENSSTUG00000024002)	golga1 (ENSSTUG00000023883)	RPL35 (ENSSTUG00000023853)	ENSSTUG00000023842	olfml2a (ENSSTUG00000023830)	nr6a1a (ENSSTUG00000023380)	NR5A1 (ENSSTUG00000023289)	ENSSTUG00000023255	lhx2b (ENSSTUG00000023228)	CRB2 (ENSSTUG00000023209)	FPGS (ENSSTUG00000021783)	ENSSTUG00000021692 #22	ENSSTUG00000021681	ENSSTUG00000021665	ENSSTUG00000021644	ccn1l2 (ENSSTUG00000021631)	FKBP15 (ENSSTUG00000021489)	fgf17 (ENSSTUG00000021462)	ENTPD2 (ENSSTUG00000021428)	nelfb (ENSSTUG00000021155)	ENSSTUG00000021145	arrdc1a (ENSSTUG00000021140)	ehmt1a (ENSSTUG00000021036)	cacna1ba (ENSSTUG00000018726)	man1b1b (ENSSTUG00000018604)	notch1b (ENSSTUG00000012059)	inpp5e (ENSSTUG00000011860)
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000075541	ENSSSAG00000075536	ENSSSAG00000065522	GOLGA1 (ENSSSAG00000075418)	RPL35 (ENSSSAG00000075399)	olfml2a (ENSSSAG00000075396)	ENSSSAG00000096143	nr6a1a (ENSSSAG00000072271)	NR5A1 (ENSSSAG00000075313)	ENSSSAG00000100039	ADGRD2 (ENSSSAG00000075294)	ENSSSAG00000085026	ENSSSAG00000075255	ENSSSAG00000102406	ENSSSAG00000074529	ENSSSAG00000074508 #22	ENSSSAG00000117241	ENSSSAG00000074499	ENSSSAG00000074498	ENSSSAG00000117780	ENSSSAG00000074285	ENSSSAG00000074256	ENSSSAG00000098312	ENSSSAG00000118121	nelfb (ENSSSAG00000072439)	ENSSSAG00000106615	arrdc1a (ENSSSAG00000074053)	ENSSSAG00000098478	cacna1ba (ENSSSAG00000009555)	ENSSSAG00000008225	ENSSSAG00000007822
Atlantic salmon	MODERN SPECIES		ENSSSAG00000063690	ENSSSAG00000084890	gnds (ENSSSAG00000063710)	ENSSSAG00000114149	ENSSSAG00000064650	ENSSSAG00000065449	ENSSSAG00000065463	ppp6c (ENSSSAG00000119839)	SCAI (ENSSSAG00000117569)	arpc5l (ENSSSAG00000066267)	RPL35 (ENSSSAG00000066273)	ENSSSAG00000094965	ncs1a (ENSSSAG00000066286)	ENSSSAG00000066294	ENSSSAG00000066321	ENSSSAG00000066731 #22	zgc:55461 (ENSSSAG00000101622)	lmo4a (ENSSSAG00000066759)	ccn1l1 (ENSSSAG00000116908)	pole3 (ENSSSAG00000066768)	lrsam1 (ENSSSAG00000066808)	rpl12 (ENSSSAG00000066776)	ENSSSAG00000066833	ndor1 (ENSSSAG00000066849)	ntmt1 (ENSSSAG00000066881)	IER5 (ENSSSAG00000066882)	ptpa (ENSSSAG00000066908)	crata (ENSSSAG00000067447)	ENSSSAG00000070732	cdk9 (ENSSSAG00000070738)	DENND1A (ENSSSAG00000070774)
Otomorpha	DUPLICATION
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES																	ENSGT00390000020276.mb.a #22
Otophysi	ANCESTRAL SPECIES	821																ENSGT00390000020276.mb.a #22	ENSGT00940000154394.b.a.a.a.b.a.b
Characiphysae	ANCESTRAL SPECIES	142		ENSGT00390000011980.b.b	ENSGT00940000158829	ENSGT00390000009787	ENSGT00390000004339	ENSGT00940000153294	ENSGT00530000064194	ENSGT00390000006980	ENSGT00940000158797	ENSGT00940000158865	ENSGT00940000154886.a.b	ENSGT00940000154821.a.a	ENSGT01070000253744.b.b.f	ENSGT00940000165492.a.a	ENSGT00390000020276.mb.b #22	ENSGT00390000020276.mb.a #22	ENSGT00940000154394.b.a.a.a.b.a.b	ENSGT00940000164907.b.b	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00530000064286	ENSGT01060000248556.A.a.a.a.b.a	ENSGT00390000011500	ENSGT00900000141021.b.a.d	ENSGT00390000008371.b	ENSGT00930000151050	ENSGT00940000160451	ENSGT00940000154645.B	ENSGT00930000151016
Characiphysae_b	ANCESTRAL SPECIES	43	ENSGT00940000155545.b	ENSGT01010000222313.A.b.b.b.a	ENSGT00390000016067	ENSGT00390000011980.b.b	ENSGT00940000158829	ENSGT00390000009787	ENSGT00390000004339	ENSGT00940000153294	ENSGT00530000064194	ENSGT00390000006980	ENSGT00940000158797	ENSGT00940000158865	ENSGT00940000154886.a.b	ENSGT00940000154821.a.a	ENSGT01070000253744.b.b.f	ENSGT00390000020276.mb.a #22	ENSGT00940000154394.b.a.a.a.b.a.b	ENSGT00940000164907.b.b	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00530000064286	ENSGT01060000248556.A.a.a.a.b.a	ENSGT00390000011500	ENSGT00900000141021.b.a.d	ENSGT00390000008371.b	ENSGT00930000151050	ENSGT00940000160451	ENSGT00940000154645.B	ENSGT00930000151016
Electric eel	MODERN SPECIES	29	ENSEEEG00000014867	ENSEEEG00000014964	TIMM22 (ENSEEEG00000014966)	ptges (ENSEEEG00000014967)	usp20 (ENSEEEG00000014969)	zgc:103692 (ENSEEEG00000014971)	med22 (ENSEEEG00000014972)	RPL7A (ENSEEEG00000014979)	surf1 (ENSEEEG00000014996)	surf6 (ENSEEEG00000014997)	kyat1 (ENSEEEG00000014998)	prkaa1 (ENSEEEG00000015011)	ENSEEEG00000015021	ENSEEEG00000015040	NPFFR2 (ENSEEEG00000015048)	ENSEEEG00000015134 #22	ENSEEEG00000015143	lmo4a (ENSEEEG00000015152)	ccn1l1 (ENSEEEG00000015155)	pole3 (ENSEEEG00000015165)	rpl12 (ENSEEEG00000015168)	lrsam1 (ENSEEEG00000015206)	crata (ENSEEEG00000015351)	ptpa (ENSEEEG00000015855)	ier5l (ENSEEEG00000016141)	ntmt1 (ENSEEEG00000016143)	ndor1 (ENSEEEG00000016145)	gpr107 (ENSEEEG00000016155)	ncs1a (ENSEEEG00000016162)	capga (ENSEEEG00000016178)	ENSEEEG00000016190
Characoidei	ANCESTRAL SPECIES																	ENSGT00390000020276.mb.a #22
Mexicana tetra	MODERN SPECIES	1329											ENSAMXG00000041783	ENSAMXG00000040666	ENSAMXG00000037785	ENSAMXG00000030558	ENSAMXG00000033350 #22	ENSAMXG00000041483 #22	ENSAMXG00000012686	ENSAMXG00000041464	zgc:55461 (ENSAMXG00000033008)	lmo4a (ENSAMXG00000035221)	ccn1l1 (ENSAMXG00000012731)
Cyprinoidei	ANCESTRAL SPECIES	19	ENSGT00390000011980.b.b	ENSGT00940000158829	ENSGT00390000009787	ENSGT00390000004339	ENSGT00940000153294	ENSGT00530000064194	ENSGT00390000006980	ENSGT00940000158797	ENSGT00950000182857.a.b	ENSGT00940000158865	ENSGT00940000154886.a.b	ENSGT00940000154821.a.a	ENSGT01070000253744.b.b.f	ENSGT00940000165492.a.a	ENSGT00390000020276.mb.b #22	ENSGT00390000020276.mb.a #22	ENSGT00940000154394.b.a.a.a.b.a.b	ENSGT00940000154394.b.a.a.b.b.c.b	ENSGT00940000164907.b.b	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00530000064286	ENSGT00940000155151.a.a.a	ENSGT00940000164907.b.a	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b	ENSGT01060000248556.A.a.a.a.b.a	ENSGT00390000011500	ENSGT00900000141021.b.a.d
Cyprininae	ANCESTRAL SPECIES	48	ENSGT00940000159362.h	ENSGT00390000011980.b.b.b	ENSGT00940000158829.b	ENSGT00390000009787.bb	ENSGT00390000004339.t	ENSGT00940000153294.g	ENSGT00530000064194.h	ENSGT00390000006980.d	ENSGT00940000158797.u	ENSGT00940000158865.p	ENSGT00940000154886.a.b.l	ENSGT00940000154821.a.a.b	ENSGT01070000253744.b.b.f	ENSGT00940000165492.a.a.c.b	ENSGT00940000165492.a.a.d	ENSGT00390000020276.mb.a #22	ENSGT00940000154394.b.a.a.a.b.a.b	ENSGT00940000164907.b.b.b.a	ENSGT00940000155151.a.a.b.b	ENSGT00940000164386.e	ENSGT00390000006922.c	ENSGT00930000151044.b	ENSGT00530000064286.n	ENSGT01060000248556.A.a.a.a.b.a.d	ENSGT00390000011500.e	ENSGT00900000141021.b.a.d.d	ENSGT00390000008371.b.d	ENSGT00930000151050.a	ENSGT00940000160451.a	ENSGT00940000154645.B.i.a	ENSGT00930000151016.z
Cyprininae_a	ANCESTRAL SPECIES	940															ENSGT00940000165492.a.a.d	ENSGT00390000020276.mb.a #22	ENSGT00940000154394.b.a.a.a.b.a.b
Golden-line barbel	MODERN SPECIES	11	ptges (ENSSGRG00000045144)	usp20 (ENSSGRG00000045154)	zgc:103692 (ENSSGRG00000045997)	med22 (ENSSGRG00000045998)	RPL7A (ENSSGRG00000045999)	surf1 (ENSSGRG00000046150)	surf6 (ENSSGRG00000046151)	kyat1 (ENSSGRG00000046159)	prkaa1 (ENSSGRG00000046663)	ENSSGRG00000046776	ENSSGRG00000046777	ENSSGRG00000046778	NPFFR2 (ENSSGRG00000046781)	ENSSGRG00000046830	ENSSGRG00000046831	ENSSGRG00000046834 #22	ENSSGRG00000046838	lmo4a (ENSSGRG00000046844)	ccn1l1 (ENSSGRG00000046845)	pole3 (ENSSGRG00000046846)	rpl12 (ENSSGRG00000046847)	lrsam1 (ENSSGRG00000046852)	crata (ENSSGRG00000001397)	ptpa (ENSSGRG00000003585)	ier5l (ENSSGRG00000005440)	ntmt1 (ENSSGRG00000005442)	ndor1 (ENSSGRG00000005492)	gpr107 (ENSSGRG00000006218)	ncs1a (ENSSGRG00000006493)	fbxw2 (ENSSGRG00000006505)	gas1b (ENSSGRG00000006506)
Otomorpha	ANCESTRAL SPECIES	851																ENSGT00390000020276.mb.b #22	ENSGT00940000154394.b.a.a.a.a.a.b
Clupeiformes	ANCESTRAL SPECIES	105	ENSGT00940000155841.c.b	ENSGT00550000074961.b	ENSGT00390000009566	ENSGT00940000158501.d.a	ENSGT00390000016384.l.a	ENSGT00940000157194.d	ENSGT00940000157936	ENSGT00940000153391.c.b.a.j.b	ENSGT00940000157419	ENSGT00940000159990	ENSGT00940000158540	ENSGT00940000156261	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000155373	ENSGT00390000016526	ENSGT00390000020276.mb.b #22	ENSGT00940000154394.b.a.a.a.a.a.b	ENSGT00940000164907.b.b	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00930000151050	ENSGT00390000008371.b	ENSGT00900000141021.b.a.d.a	ENSGT00390000011500	ENSGT01060000248556.A.a.a.a.b.a	ENSGT00940000160451	ENSGT00940000154645.B.e	ENSGT00930000151016	ENSGT00940000155946.c.b
Atlantic herring	MODERN SPECIES	3	ENSCHAG00000010356	ppp6c (ENSCHAG00000010333)	SCAI (ENSCHAG00000010110)	arpc5lb (ENSCHAG00000009956)	rpl35 (ENSCHAG00000009913)	OLFML2A (ENSCHAG00000009877)	NR6A1 (ENSCHAG00000009757)	nr5a1b (ENSCHAG00000009743)	psmb7 (ENSCHAG00000009649)	NEK6 (ENSCHAG00000009167)	LHX2 (ENSCHAG00000009120)	DENND1A (ENSCHAG00000007433)	CRB2 (ENSCHAG00000007287)	cdk9 (ENSCHAG00000007237)	fpgs (ENSCHAG00000006452)	ENSCHAG00000005894 #22	ENSCHAG00000005749	lmo4a (ENSCHAG00000005730)	ccn1l1 (ENSCHAG00000005656)	pole3 (ENSCHAG00000005619)	rpl12 (ENSCHAG00000005485)	lrsam1 (ENSCHAG00000005132)	ndor1 (ENSCHAG00000004879)	ntmt1 (ENSCHAG00000004859)	ier5l (ENSCHAG00000004832)	ptpa (ENSCHAG00000004320)	crata (ENSCHAG00000003848)	gpr107 (ENSCHAG00000003724)	ncs1a (ENSCHAG00000003645)	fbxw2 (ENSCHAG00000003600)	angptl2a (ENSCHAG00000003585)
Denticle herring	MODERN SPECIES	13	ppp6c (ENSDCDG00000013582)	SCAI (ENSDCDG00000013542)	arpc5lb (ENSDCDG00000013501)	rpl35 (ENSDCDG00000013468)	ENSDCDG00000013448	OLFML2A (ENSDCDG00000013436)	NR6A1 (ENSDCDG00000013420)	nr5a1b (ENSDCDG00000013415)	psmb7 (ENSDCDG00000013357)	NEK6 (ENSDCDG00000013125)	LHX2 (ENSDCDG00000013115)	DENND1A (ENSDCDG00000029744)	CRB2 (ENSDCDG00000029740)	cdk9 (ENSDCDG00000029739)	fpgs (ENSDCDG00000028799)	ENSDCDG00000028697 #22	ENSDCDG00000028678	lmo4a (ENSDCDG00000028675)	ccn1l1 (ENSDCDG00000028541)	ENSDCDG00000028537	pole3 (ENSDCDG00000028534)	rpl12 (ENSDCDG00000028508)	lrsam1 (ENSDCDG00000028407)	ndor1 (ENSDCDG00000028380)	ntmt1 (ENSDCDG00000028367)	ier5l (ENSDCDG00000028362)	ptpa (ENSDCDG00000027993)	crata (ENSDCDG00000027328)	gpr107 (ENSDCDG00000027253)	ncs1a (ENSDCDG00000027251)	fbxw2 (ENSDCDG00000027250)
Otophysi	ANCESTRAL SPECIES	100	ENSGT00940000164999	ENSGT00940000159362	ENSGT00390000011980.b.b	ENSGT00940000158829	ENSGT00390000009787	ENSGT00390000004339	ENSGT00940000153294	ENSGT00530000064194	ENSGT00390000006980	ENSGT00940000158797	ENSGT00940000158865	ENSGT00940000154886.a.b	ENSGT00940000154821.a.a	ENSGT01070000253744.b.b.f	ENSGT00940000165492.a.a	ENSGT00390000020276.mb.b #22	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000164907.b.b	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00530000064286	ENSGT00940000155151.a.a.a	ENSGT00940000164907.b.a	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b	ENSGT01060000248556.A.a.a.a.b.a	ENSGT00390000011500	ENSGT00900000141021.b.a.d	ENSGT00390000008371.b
Cyprinoidei	ANCESTRAL SPECIES	19	ENSGT00940000159362	ENSGT00390000011980.b.b	ENSGT00940000158829	ENSGT00390000009787	ENSGT00390000004339	ENSGT00940000153294	ENSGT00530000064194	ENSGT00390000006980	ENSGT00940000158797	ENSGT00950000182857.a.b	ENSGT00940000158865	ENSGT00940000154886.a.b	ENSGT00940000154821.a.a	ENSGT01070000253744.b.b.f	ENSGT00940000165492.a.a	ENSGT00390000020276.mb.b #22	ENSGT00390000020276.mb.a #22	ENSGT00940000154394.b.a.a.a.b.a.b	ENSGT00940000154394.b.a.a.b.b.c.b	ENSGT00940000164907.b.b	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00530000064286	ENSGT00940000155151.a.a.a	ENSGT00940000164907.b.a	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b	ENSGT01060000248556.A.a.a.a.b.a	ENSGT00390000011500
Cyprininae	ANCESTRAL SPECIES	171	ENSGT00390000014316.c.a.c	ENSGT00550000074940	ENSGT00940000157266.b.g	ENSGT00940000159024.f	ENSGT00940000167144.f	ENSGT00950000183135.B.a.b.g	ENSGT00940000166497.c	ENSGT00940000159651.b	ENSGT00940000167002.f.a	ENSGT00940000164405.k.a	ENSGT00940000165256.h	ENSGT00530000063555.B.cd.a	ENSGT00390000016110.m	ENSGT00940000154394.b.a.b	ENSGT00980000199397	ENSGT00390000020276.mb.b #22	ENSGT00940000154394.b.a.a.b.b.d	ENSGT00940000158157.d	ENSGT00940000161041.e	ENSGT00390000011639.o.b	ENSGT00940000156764.b.a	ENSGT00390000007539.a.e	ENSGT00620000087966.b.e	ENSGT00940000164608	ENSGT00940000166208.h	ENSGT00940000160310.a.a	ENSGT00730000111187.a.a.c.a	ENSGT00390000002089.a.a.b.h.b	ENSGT00940000173994	ENSGT00510000048574.a	ENSGT00390000008104.e
Goldfish	MODERN SPECIES	23	ms4a17c.1 (ENSCARG00000006531)	ENSCARG00000006505	garnl3 (ENSCARG00000006359)	ptges (ENSCARG00000006304)	usp20 (ENSCARG00000005878)	zgc:103692 (ENSCARG00000005767)	med22 (ENSCARG00000005742)	RPL7A (ENSCARG00000059940)	surf1 (ENSCARG00000059885)	surf6 (ENSCARG00000059875)	kyat1 (ENSCARG00000059358)	prkaa1 (ENSCARG00000059027)	ENSCARG00000059013	NPFFR2 (ENSCARG00000059007)	ENSCARG00000058950	ENSCARG00000058849 #22	ENSCARG00000058801	lmo4a (ENSCARG00000058713)	ccn1l1 (ENSCARG00000058690)	pole3 (ENSCARG00000058656)	rpl12 (ENSCARG00000058517)	lrsam1 (ENSCARG00000057109)	ENSCARG00000057036	crata (ENSCARG00000055185)	ptpa (ENSCARG00000054252)	ier5l (ENSCARG00000054199)	ntmt1 (ENSCARG00000054134)	ndor1 (ENSCARG00000054025)	gpr107 (ENSCARG00000053925)	ncs1a (ENSCARG00000053890)	fbxw2 (ENSCARG00000053886)
Characiphysae	ANCESTRAL SPECIES	142			ENSGT00390000011980.b.b	ENSGT00940000158829	ENSGT00390000009787	ENSGT00390000004339	ENSGT00940000153294	ENSGT00530000064194	ENSGT00390000006980	ENSGT00940000158797	ENSGT00940000158865	ENSGT00940000154886.a.b	ENSGT00940000154821.a.a	ENSGT01070000253744.b.b.f	ENSGT00940000165492.a.a	ENSGT00390000020276.mb.b #22	ENSGT00390000020276.mb.a #22	ENSGT00940000154394.b.a.a.a.b.a.b	ENSGT00940000164907.b.b	ENSGT00940000155151.a.a.b	ENSGT00940000164386	ENSGT00390000006922	ENSGT00930000151044	ENSGT00530000064286	ENSGT01060000248556.A.a.a.a.b.a	ENSGT00390000011500	ENSGT00900000141021.b.a.d	ENSGT00390000008371.b	ENSGT00930000151050	ENSGT00940000160451	ENSGT00940000154645.B
Channel catfish	MODERN SPECIES	5	SHISAL1 (ENSIPUG00000013104)	plxnb2b (ENSIPUG00000013000)	dnaaf1 (ENSIPUG00000012982)	tubgcp6 (ENSIPUG00000012929)	appl2 (ENSIPUG00000012828)	NUAK1 (ENSIPUG00000012794)	DEPDC7 (ENSIPUG00000012693)	ENSIPUG00000012544	ENSIPUG00000012518	ENSIPUG00000012468	atp7a (ENSIPUG00000012398)	Sowaha (ENSIPUG00000012383)	gdf9 (ENSIPUG00000012372)	gstp1 (ENSIPUG00000012349)	trpc7 (ENSIPUG00000012300)	ENSIPUG00000012284 #22	zgc:92242 (ENSIPUG00000012274)	CXXC5 (ENSIPUG00000012253)	Cisd1 (ENSIPUG00000012234)	ube2d2 (ENSIPUG00000012146)	ppp3cb (ENSIPUG00000012028)	Tmem173 (ENSIPUG00000011996)	si:ch211-39i2.2 (ENSIPUG00000011973)	brd8 (ENSIPUG00000011835)	DPY19L4 (ENSIPUG00000011756)	KDM1B (ENSIPUG00000011710)	cfap69 (ENSIPUG00000011653)	sfxn1 (ENSIPUG00000011608)	SEPT8b (ENSIPUG00000011324)	CCNG1 (ENSIPUG00000011238)	nudcd2 (ENSIPUG00000011272)
Characiphysae_b	ANCESTRAL SPECIES	450															ENSGT00940000165492.a.a	ENSGT00390000020276.mb.b #22
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	1110														ENSEEEG00000005954	ENSEEEG00000005956 #22	ENSEEEG00000005960 #22
Electric eel	MODERN SPECIES	1110															ENSEEEG00000005954	ENSEEEG00000005956 #22	ENSEEEG00000005960 #22
Characoidei	ANCESTRAL SPECIES	608															ENSGT00940000165492.a.a	ENSGT00390000020276.mb.b #22
Mexicana tetra	MODERN SPECIES	1329												ENSAMXG00000041783	ENSAMXG00000040666	ENSAMXG00000037785	ENSAMXG00000030558	ENSAMXG00000033350 #22	ENSAMXG00000041483 #22	ENSAMXG00000012686	ENSAMXG00000041464	zgc:55461 (ENSAMXG00000033008)	lmo4a (ENSAMXG00000035221)	ccn1l1 (ENSAMXG00000012731)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	188	ENSPNAG00000023218	sfxn1 (ENSPNAG00000005338)	septin8b (ENSPNAG00000023257)	ccng1 (ENSPNAG00000023264)	nudcd2 (ENSPNAG00000003765)	gabra6a (ENSPNAG00000023320)	gabrb2a (ENSPNAG00000023369)	ATP10B (ENSPNAG00000023541)	ENSPNAG00000023557	ENSPNAG00000023568	atp7a (ENSPNAG00000023658)	ENSPNAG00000023666	gdf9 (ENSPNAG00000023678)	ENSPNAG00000003782	trpc3 (ENSPNAG00000023873)	ENSPNAG00000023889 #22
Red-bellied piranha	MODERN SPECIES	2															NPFFR2 (ENSPNAG00000024089)	ENSPNAG00000024069 #22	ENSPNAG00000024010	zgc:55461 (ENSPNAG00000023984)	lmo4a (ENSPNAG00000023937)	ccn1l1 (ENSPNAG00000023906)	pole3 (ENSPNAG00000023860)	rpl12 (ENSPNAG00000023834)	lrsam1 (ENSPNAG00000023778)	ENSPNAG00000023633	crata (ENSPNAG00000023586)	ptpa (ENSPNAG00000023503)	ier5l (ENSPNAG00000023424)	ntmt1 (ENSPNAG00000023338)	ndor1 (ENSPNAG00000023402)	gpr107 (ENSPNAG00000023306)	ncs1a (ENSPNAG00000023289)
Otomorpha	ANCESTRAL SPECIES	338															ENSGT00940000170399	ENSGT00390000020276.nb #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00410000028469	ENSGT00940000155958	ENSGT00940000156737	ENSGT00950000183184.a.b	ENSGT00390000017837.b	ENSGT00390000007526	ENSGT00940000161184	ENSGT01060000248556.C	ENSGT00940000159418	ENSGT00940000159175	ENSGT00940000165993
Clupeiformes	ANCESTRAL SPECIES	492																ENSGT00390000020276.nb #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B
Denticle herring	MODERN SPECIES	15	ENSDCDG00000002671	steap4 (ENSDCDG00000002675)	ENSDCDG00000002677	TCEANC (ENSDCDG00000002679)	rab9a (ENSDCDG00000002682)	ENSDCDG00000002685	gemin8 (ENSDCDG00000002687)	PRPS2 (ENSDCDG00000002692)	ENSDCDG00000002695 ##35	MSL3 (ENSDCDG00000002702)	ARHGAP6 (ENSDCDG00000002708)	MID1 (ENSDCDG00000002714)	ENSDCDG00000002726	ENSDCDG00000002729	ENSDCDG00000002732	glipr2l (ENSDCDG00000002735) #22	ENSDCDG00000002737	TBRG4 (ENSDCDG00000002744)	pwp2h (ENSDCDG00000002762)	ENSDCDG00000002780	APP (ENSDCDG00000002808)	ENSDCDG00000002868	cyyr1 (ENSDCDG00000002872)	ADAMTS1 (ENSDCDG00000002875)	ADAMTS5 (ENSDCDG00000002888)	n6amt1 (ENSDCDG00000002902)	gart (ENSDCDG00000002929)	ENSDCDG00000003058	atp1a1a.4 (ENSDCDG00000003539)	ENSDCDG00000005475	ENSDCDG00000005478
Atlantic herring	MODERN SPECIES	2	ENSCHAG00000015393	cxcr3.1 (ENSCHAG00000015382)	cxcr3.3 (ENSCHAG00000015375)	cxcr3.2 (ENSCHAG00000015371)	cnfn (ENSCHAG00000015351)	tlr21 (ENSCHAG00000015340)	pafah1b3 (ENSCHAG00000015317)	ENSCHAG00000015220	ENSCHAG00000015162	ENSCHAG00000015130	ENSCHAG00000015115	ENSCHAG00000015089	ENSCHAG00000014939	ENSCHAG00000014890	ENSCHAG00000014839	glipr2l (ENSCHAG00000014827) #22	ENSCHAG00000014819	ENSCHAG00000014803	ENSCHAG00000014756	ENSCHAG00000014736	ENSCHAG00000014715	ENSCHAG00000014671	ENSCHAG00000014637	ENSCHAG00000014613	steap4 (ENSCHAG00000014323)	steap4 (ENSCHAG00000013978)	ENSCHAG00000013940	mindy3 (ENSCHAG00000013903)	ENSCHAG00000013898	GOLT1B (ENSCHAG00000013885)	ENSCHAG00000013864
Otophysi	ANCESTRAL SPECIES	1	ENSGT00940000154732	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00740000115874	ENSGT00940000158322.j	ENSGT00390000010606	ENSGT00940000170399.b	ENSGT00940000170399.a	ENSGT00390000020276.nb #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00410000028469	ENSGT00940000155958	ENSGT00940000156737.a	ENSGT00950000183184.a.b	ENSGT00390000017837.b	ENSGT00390000007526	ENSGT00940000161184	ENSGT01060000248556.C	ENSGT00940000159418	ENSGT00940000159175	ENSGT00940000165993
Cyprinoidei	ANCESTRAL SPECIES	13	ENSGT00940000154732	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688.f	ENSGT00950000182992.a.a	ENSGT00740000115874	ENSGT00940000158322.j	ENSGT00390000010606	ENSGT00940000170399.b	ENSGT00940000170399.a	ENSGT00390000020276.nb #22	ENSGT00940000161501.i.a	ENSGT01030000234607.A.a.b.a	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00410000028469	ENSGT00940000155958	ENSGT00940000156737.a	ENSGT00950000183184.a.b	ENSGT00390000017837.b	ENSGT00390000007526	ENSGT00940000161184	ENSGT01060000248556.C	ENSGT00940000159418	ENSGT00940000159822	ENSGT00940000153269.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	147	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.b	ENSGT00390000014303.b	ENSGT00940000154732.d	ENSGT00390000001667.g	ENSGT00940000159043	ENSGT00550000075033.b	ENSGT00390000003561.g	ENSGT00950000183038.a.b.b.a.d	ENSGT01000000214440.A.b.a.b	ENSGT00930000151031.d	ENSGT00940000157688.f	ENSGT00950000182992.a.a.c	ENSGT00740000115874.c	ENSGT00940000158322.j.f	ENSGT00390000010606.b	ENSGT00390000020276.nb.a #22	ENSGT00940000161501.i.a.a	ENSGT01030000234607.A.a.b.a.a	ENSGT00390000008042.B.n	ENSGT00940000160479.f.b	ENSGT00410000028469.c	ENSGT00940000155958.u	ENSGT00940000156737.a.a	ENSGT00970000193390.c.a.a.a.a.a.a	ENSGT00950000183184.a.b.l	ENSGT00390000017837.b.b	ENSGT00390000007526.k.a	ENSGT01060000248556.C.d	ENSGT00940000159418.u.b	ENSGT00940000159822.i	ENSGT00940000161854.a.a
Goldfish	MODERN SPECIES	35	cdh17 (ENSCARG00000023162)	pdp1 (ENSCARG00000023252)	trim35-29 (ENSCARG00000023261)	ino80c (ENSCARG00000023270)	GALNT1 (ENSCARG00000023320)	TMEM245 (ENSCARG00000023444)	FRRS1L (ENSCARG00000023491)	alg2 (ENSCARG00000023495)	sec61b (ENSCARG00000023516)	nr4a3 (ENSCARG00000023559)	stx17 (ENSCARG00000023590)	erp44 (ENSCARG00000023613)	invs (ENSCARG00000023704)	ENSCARG00000024188	rbm12ba (ENSCARG00000024205)	glipr2l (ENSCARG00000024209) #22	ENSCARG00000024221	ENSCARG00000024228	steap4 (ENSCARG00000024288)	ENSCARG00000024304	esrp1 (ENSCARG00000024351)	ENSCARG00000025468	PTPN3 (ENSCARG00000026224)	ENSCARG00000026298	trim35-28 (ENSCARG00000026359)	MEGF8 (ENSCARG00000026382)	ENSCARG00000026479	ENSCARG00000026489	arhgef1b (ENSCARG00000026536)	ANKRD34A (ENSCARG00000027668)	txnipb (ENSCARG00000027679)
Cyprininae_a	ANCESTRAL SPECIES	424						ENSGT00390000003561.g	ENSGT00550000075033.b	ENSGT00950000183038.a.b.b.a.d	ENSGT01000000214440.A.b.a.b	ENSGT00930000151031.d	ENSGT00940000157688.f.a	ENSGT00950000182992.a.a.c	ENSGT00740000115874.c	ENSGT00940000158322.j.f	ENSGT00390000010606.b	ENSGT00390000020276.nb.a #22	ENSGT00940000161501.i.a.a	ENSGT01030000234607.A.a.b.a.a	ENSGT00390000008042.B.n	ENSGT00940000160479.f.b	ENSGT00410000028469.c	ENSGT00940000155958.u	ENSGT00940000156737.a.a	ENSGT00970000193390.c.a.a.a.a.a.a	ENSGT00950000183184.a.b.l	ENSGT00390000017837.b.b
Common carp reference	MODERN SPECIES	2	ENSCCRG00000043817	ino80c (ENSCCRG00000008384)	ENSCCRG00000026251	ENSCCRG00000026224	ENSCCRG00000026170	sec61b (ENSCCRG00000025986)	alg2 (ENSCCRG00000075981)	nr4a3 (ENSCCRG00000005364)	stx17 (ENSCCRG00000030084)	erp44 (ENSCCRG00000072895)	invs (ENSCCRG00000030108)	tex10 (ENSCCRG00000030165)	rbm12ba (ENSCCRG00000071955)	ENSCCRG00000042407	ENSCCRG00000055717	glipr2l (ENSCCRG00000056819) #22	ENSCCRG00000073035	ENSCCRG00000030177	steap4 (ENSCCRG00000082412)	ENSCCRG00000082005	ENSCCRG00000038777	mindy3 (ENSCCRG00000068466)	ITGA8 (ENSCCRG00000069153)	ENSCCRG00000017863	FAM171A1 (ENSCCRG00000030791)	nmt2 (ENSCCRG00000076609)	rpp38 (ENSCCRG00000077861)	acbd7 (ENSCCRG00000078556)	crot (ENSCCRG00000030944)	abcb4 (ENSCCRG00000070627)	ENSCCRG00000049747
Golden-line barbel	MODERN SPECIES	174	GALNT1 (ENSSGRG00000050417)	TMEM245 (ENSSGRG00000050556)	alg2 (ENSSGRG00000050567)	sec61b (ENSSGRG00000050569)	nr4a3 (ENSSGRG00000050571)	stx17 (ENSSGRG00000050574)	erp44 (ENSSGRG00000050577)	invs (ENSSGRG00000050587)	tex10 (ENSSGRG00000050591)	ENSSGRG00000050600	rbm12ba (ENSSGRG00000050603)	TMEM67 (ENSSGRG00000050608)	rbm12ba (ENSSGRG00000050629)	ENSSGRG00000050631	ENSSGRG00000050634	glipr2l (ENSSGRG00000050635) #22	ENSSGRG00000050636	ENSSGRG00000050637	steap4 (ENSSGRG00000050638)	ENSSGRG00000050639	ENSSGRG00000050640	mindy3 (ENSSGRG00000050643)	ENSSGRG00000050644
Cyprininae	ANCESTRAL SPECIES	102	ENSGT00940000157830.d.b	ENSGT00940000157655.f	ENSGT00940000156368.b.d	ENSGT00390000014303.a	ENSGT00940000154732.c	ENSGT00390000001667.h	ENSGT00550000075033.a	ENSGT00390000003561.h	ENSGT00950000183038.a.b.b.a.c	ENSGT01000000214440.A.b.a.a	ENSGT00930000151031.c	ENSGT00950000182992.a.a.d	ENSGT00740000115874.d	ENSGT00940000158322.j.e	ENSGT00390000010606.a	ENSGT00390000020276.nb.b #22	ENSGT00940000161501.i.a.b	ENSGT01030000234607.A.a.b.a.b	ENSGT00390000008042.B.m	ENSGT00940000160479.e	ENSGT00940000162556.G.c.a.a	ENSGT00410000028469.d	ENSGT00940000155958.v	ENSGT00940000156737.a.b	ENSGT00950000183184.a.b.k	ENSGT00390000017837.b.a	ENSGT00390000007526.k.b	ENSGT00940000161184	ENSGT01060000248556.C.c	ENSGT00940000159418.u.a	ENSGT00940000159822.j
Cyprininae_a	ANCESTRAL SPECIES	7	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.b	ENSGT00390000014303.b	ENSGT00940000154732.d	ENSGT00390000001667.g	ENSGT00940000159043	ENSGT00550000075033.a	ENSGT00390000003561.h	ENSGT00950000183038.a.b.b.a.c	ENSGT01000000214440.A.b.a.a	ENSGT00930000151031.c	ENSGT00940000157688.f.b	ENSGT00950000182992.a.a.d	ENSGT00740000115874.d	ENSGT00940000158322.j.e	ENSGT00390000010606.a	ENSGT00390000020276.nb.b #22	ENSGT00940000161501.i.a.b	ENSGT01030000234607.A.a.b.a.b	ENSGT00390000008042.B.m	ENSGT00940000160479.f.a	ENSGT00940000162556.G.c.b.a.b.a	ENSGT00940000162556.G.c.a.a	ENSGT00410000028469.d	ENSGT00940000155958.v	ENSGT00940000156737.a.b	ENSGT00950000183184.a.b.k	ENSGT00390000017837.b.a	ENSGT00390000007526.k.a	ENSGT00940000161184	ENSGT01060000248556.C.c	ENSGT00940000159418.u.a
Common carp reference	MODERN SPECIES	47	cdh17 (ENSCCRG00000025936)	pdp1 (ENSCCRG00000047196)	ENSCCRG00000062240	ino80c (ENSCCRG00000026379)	ENSCCRG00000026233	ENSCCRG00000077591	alg2 (ENSCCRG00000071178)	sec61b (ENSCCRG00000063537)	nr4a3 (ENSCCRG00000030078)	stx17 (ENSCCRG00000055802)	erp44 (ENSCCRG00000030094)	tex10 (ENSCCRG00000042399)	ENSCCRG00000059858	rbm12ba (ENSCCRG00000055370)	ENSCCRG00000042455	glipr2l (ENSCCRG00000058364) #22	ENSCCRG00000046467	ENSCCRG00000046475	steap4 (ENSCCRG00000046494)	ENSCCRG00000079456	ENSCCRG00000016339	ENSCCRG00000058292	ENSCCRG00000021923	mindy3 (ENSCCRG00000082793)	ITGA8 (ENSCCRG00000033182)	FAM171A1 (ENSCCRG00000001936)	nmt2 (ENSCCRG00000057789)	acbd7 (ENSCCRG00000076215)	rpp38 (ENSCCRG00000075192)	crot (ENSCCRG00000029692)	abcb4 (ENSCCRG00000029754)
Golden-line barbel	MODERN SPECIES	4172																glipr2l (ENSSGRG00000006417) #22	ENSSGRG00000006416
Goldfish	MODERN SPECIES	7	rcc1 (ENSCARG00000027515)	phactr4b (ENSCARG00000027715)	ENSCARG00000027808	HIVEP3 (ENSCARG00000027815)	SERINC2 (ENSCARG00000027835)	ENSCARG00000027846	ENSCARG00000027854	paqr7b (ENSCARG00000027976)	nr4a3 (ENSCARG00000001995)	stx17 (ENSCARG00000002041)	erp44 (ENSCARG00000002081)	tex10 (ENSCARG00000002213)	ENSCARG00000002292	rbm12ba (ENSCARG00000002300)	TMEM67 (ENSCARG00000002324)	glipr2l (ENSCARG00000002459) #22	ENSCARG00000002470	ENSCARG00000002483	steap4 (ENSCARG00000002506)	ADCY2 (ENSCARG00000002599)	ENSCARG00000003417	ENSCARG00000003419	ENSCARG00000004137	CCR8 (ENSCARG00000012739)	CCR8 (ENSCARG00000012742)	ENSCARG00000012750	cobl (ENSCARG00000012774)	GRB10 (ENSCARG00000012870)	ddc (ENSCARG00000014053)	entpd3 (ENSCARG00000014180)	ENSCARG00000014208
Zebrafish	MODERN SPECIES	7	TMEM245 (ENSDARG00000070455)	ENSDARG00000108060	FRRS1L (ENSDARG00000103940)	alg2 (ENSDARG00000070399)	sec61b (ENSDARG00000076568)	nr4a3 (ENSDARG00000055854)	stx17 (ENSDARG00000006869)	erp44 (ENSDARG00000019008)	invs (ENSDARG00000002213)	tex10 (ENSDARG00000055885)	ENSDARG00000091631	rbm12ba (ENSDARG00000055889)	TMEM67 (ENSDARG00000076752)	ENSDARG00000094881	si:ch211-197h24.9 (ENSDARG00000093760)	glipr2l (ENSDARG00000016837) #22	ENSDARG00000012347	ENSDARG00000074807	steap4 (ENSDARG00000055901)	ENSDARG00000103396	ENSDARG00000102683	ENSDARG00000089480	mindy3 (ENSDARG00000028715)	ITGA8 (ENSDARG00000078717)	FAM171A1 (ENSDARG00000079788)	nmt2 (ENSDARG00000021808)	rpp38 (ENSDARG00000040350)	acbd7 (ENSDARG00000094730)	ENSDARG00000109768	crot (ENSDARG00000040352)	abcb4 (ENSDARG00000010936)
Characiphysae	ANCESTRAL SPECIES	37	ENSGT00940000154732	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00740000115874	ENSGT00940000158322.j	ENSGT00390000010606	ENSGT00940000170399.b	ENSGT00940000170399.a	ENSGT00390000020276.nb #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00410000028469	ENSGT00940000162556.G.c.a.a	ENSGT00940000162556.G.c.b.a.b.a	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000155958	ENSGT00940000156737.a	ENSGT00950000183184.a.b	ENSGT00390000017837.b	ENSGT00390000007526	ENSGT00940000161184	ENSGT01060000248556.C	ENSGT00940000159418
Characiphysae_b	ANCESTRAL SPECIES	37	ENSGT00940000154732	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00740000115874	ENSGT00940000158322.j	ENSGT00390000010606	ENSGT00940000170399.b	ENSGT00940000170399.a	ENSGT00390000020276.nb #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00410000028469	ENSGT00940000162556.G.c.a.a	ENSGT00940000162556.G.c.b.a.b.a	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000155958	ENSGT00940000156737.a	ENSGT00950000183184.a.b	ENSGT00390000017837.b	ENSGT00390000007526	ENSGT00940000161184	ENSGT01060000248556.C	ENSGT00940000159418
Characoidei	ANCESTRAL SPECIES	34	ENSGT00940000154732	ENSGT00390000001667	ENSGT00940000159043	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a	ENSGT00740000115874	ENSGT00940000158322.j	ENSGT00390000010606	ENSGT00940000170399.b	ENSGT00940000170399.a	ENSGT00390000020276.nb #22	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00410000028469	ENSGT00940000162556.G.c.b.a.b.a	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000155958	ENSGT00940000156737.a	ENSGT00950000183184.a.b	ENSGT00390000017837.b	ENSGT00390000007526	ENSGT00940000161184	ENSGT01060000248556.C	ENSGT00940000159418	ENSGT00940000159175
Mexicana tetra	MODERN SPECIES	18	GALNT1 (ENSAMXG00000020985)	TMEM245 (ENSAMXG00000020961)	FRRS1L (ENSAMXG00000033346)	alg2 (ENSAMXG00000042625)	sec61b (ENSAMXG00000039564)	nr4a3 (ENSAMXG00000032123)	stx17 (ENSAMXG00000038428)	erp44 (ENSAMXG00000020899)	invs (ENSAMXG00000020888)	tex10 (ENSAMXG00000020864)	rbm12ba (ENSAMXG00000020853)	ENSAMXG00000020847	TMEM67 (ENSAMXG00000020834)	ENSAMXG00000036765	si:ch211-197h24.9 (ENSAMXG00000030650)	glipr2l (ENSAMXG00000034380) #22	ENSAMXG00000043855	ENSAMXG00000039340	ENSAMXG00000034282	ENSAMXG00000030744	ENSAMXG00000038254	steap4 (ENSAMXG00000011009)	ENSAMXG00000036364	ENSAMXG00000043040	ENSAMXG00000032304	stoml3a (ENSAMXG00000009863)	slc25a15a (ENSAMXG00000035361)	foxo1a (ENSAMXG00000037494)	cog6 (ENSAMXG00000009896)	ENSAMXG00000032042	LHFPL1 (ENSAMXG00000031038)
Red-bellied piranha	MODERN SPECIES	41	ENSPNAG00000009282	atp6v1c1a (ENSPNAG00000009326)	azin1a (ENSPNAG00000009343)	ENSPNAG00000009366	ubr5 (ENSPNAG00000001318)	SRSF10 (ENSPNAG00000009492)	ENSPNAG00000009501	fabp10a (ENSPNAG00000009527)	ENSPNAG00000009588	ENSPNAG00000009618	ENSPNAG00000009633	ENSPNAG00000009652	MAN1C1 (ENSPNAG00000009687)	SLC9A1 (ENSPNAG00000009735)	fam110d (ENSPNAG00000009745)	glipr2l (ENSPNAG00000009757) #22	ENSPNAG00000009792	ENSPNAG00000006509	ENSPNAG00000009860	ENSPNAG00000001340	ENSPNAG00000009870	ENSPNAG00000001342	ENSPNAG00000001346	steap4 (ENSPNAG00000009918)	mindy3 (ENSPNAG00000009979)
Electric eel	MODERN SPECIES	159	ENSEEEG00000019068	SDK2 (ENSEEEG00000019073)	ttyh2l (ENSEEEG00000019077)	CHMP6 (ENSEEEG00000019082)	baiap2a (ENSEEEG00000019085)	AATK (ENSEEEG00000019094)	ENSEEEG00000019105	rcvrna (ENSEEEG00000019106)	gas7a (ENSEEEG00000019109)	sco1 (ENSEEEG00000019123)	tbl3 (ENSEEEG00000019130)	noxo1a (ENSEEEG00000019160)	GID4 (ENSEEEG00000019161)	drc3 (ENSEEEG00000019162)	TOM1L2 (ENSEEEG00000019165)	glipr2l (ENSEEEG00000019171) #22	ENSEEEG00000019172	ENSEEEG00000019177	ENSEEEG00000019180	ENSEEEG00000019183	steap4 (ENSEEEG00000019184)	mindy3 (ENSEEEG00000019189)	ENSEEEG00000019200
Channel catfish	MODERN SPECIES	15	tmem245 (ENSIPUG00000019475)	FRRS1L (ENSIPUG00000019524)	alg2 (ENSIPUG00000019530)	sec61b (ENSIPUG00000019537)	morn3 (ENSIPUG00000019555)	nr4a3 (ENSIPUG00000019572)	STX17 (ENSIPUG00000019591)	ERP44 (ENSIPUG00000019619)	invs (ENSIPUG00000019659)	tex10 (ENSIPUG00000019696)	ENSIPUG00000019707	ENSIPUG00000019717	rbm12ba (ENSIPUG00000019731)	tmem67 (ENSIPUG00000019734)	ENSIPUG00000019769	Glipr2 (ENSIPUG00000019818) #22	ENSIPUG00000019841	tbrg4 (ENSIPUG00000019857)	ENSIPUG00000019885	ENSIPUG00000019911	ENSIPUG00000020628	ENSIPUG00000020635	ENSIPUG00000022258	steap4 (ENSIPUG00000022261)	fam188a (ENSIPUG00000022290)	itga8 (ENSIPUG00000022320)	rbm42 (ENSIPUG00000022365)	ENSIPUG00000022374	ENSIPUG00000022395	ENSIPUG00000022409	UPK1A (ENSIPUG00000022413)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	17	trub2 (ENSECRG00000017442)	ENSECRG00000017464	coq4 (ENSECRG00000017490)	CFAP68 (ENSECRG00000017524)	ENSECRG00000017547	ENSECRG00000017566	ENSECRG00000017590	ENSECRG00000017612	ENSECRG00000017622	ENSECRG00000017645	ENSECRG00000017675	ENSECRG00000017710	ENSECRG00000017724	ENSECRG00000017756	ENSECRG00000017828	ENSECRG00000017881 #22	TUBB4B (ENSECRG00000017930)	ENSECRG00000018141	ENSECRG00000018175	ENSECRG00000018190	ENSECRG00000018206	SLC34A3 (ENSECRG00000018228)	lmo4a (ENSECRG00000018271)	pole3 (ENSECRG00000018295)	rpl12 (ENSECRG00000018310)	lrsam1 (ENSECRG00000018356)	FKBP15 (ENSECRG00000018419)	ndor1 (ENSECRG00000018516)	TRAF2 (ENSECRG00000018570)	ENSECRG00000018619	ENSECRG00000018701
Reedfish	MODERN SPECIES	4	SPATA48 (ENSECRG00000016563)	vwc2 (ENSECRG00000016540)	ENSECRG00000016500	ZNF830 (ENSECRG00000016437)	ENSECRG00000015358	ENSECRG00000015247	MOCOS (ENSECRG00000015079)	PTPN3 (ENSECRG00000014992)	EPB41L4B (ENSECRG00000014950)	TMEM245 (ENSECRG00000014898)	ENSECRG00000014850	FRRS1L (ENSECRG00000014825)	ENSECRG00000014648	GALNT1 (ENSECRG00000014570)	ino80c (ENSECRG00000014536)	glipr2l (ENSECRG00000014500) #22	alg2 (ENSECRG00000015461)	sec61b (ENSECRG00000015434)	nr4a3 (ENSECRG00000015392)	ENSECRG00000015357	erp44 (ENSECRG00000015329)	invs (ENSECRG00000015286)	tex10 (ENSECRG00000015212)	ENSECRG00000015160	ENSECRG00000015104	ENSECRG00000015069	ENSECRG00000015034	ENSECRG00000014984	ENSECRG00000014964	ENSECRG00000014942	ENSECRG00000014925