Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Glires	ANCESTRAL SPECIES	9	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00390000006136	ENSGT00940000154371.a	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00390000006136	ENSGT00940000154371.a	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000006136	ENSGT00940000154371.a	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i #15	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b #16	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i #15	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b #16	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Rat	MODERN SPECIES	15	Spag8 (ENSRNOG00000032539) #7	Hint2 (ENSRNOG00000015866) #8	Fam221b (ENSRNOG00000025453) #9	Tmem8b (ENSRNOG00000015664) #10	Or13e8 (ENSRNOG00000015652) #11	Or13j1 (ENSRNOG00000066545) #12	Hrct1 (ENSRNOG00000039336) #13	ENSRNOG00000070391 #14	Or13c7d (ENSRNOG00000062897) #15	Or13c7e (ENSRNOG00000065792) #16	Or13c7b (ENSRNOG00000063480) #17	Or13c7c (ENSRNOG00000070597) #18	Or13c7 (ENSRNOG00000068857) #19	Reck (ENSRNOG00000014863) #20	ENSRNOG00000070166 #21	Glipr2 (ENSRNOG00000014838) #22	Ccin (ENSRNOG00000014831) #23	Clta (ENSRNOG00000014635) #24	Gne (ENSRNOG00000014365) #25	Rnf38 (ENSRNOG00000013956) #26	Melk (ENSRNOG00000013598) #27	LOC100359916 (ENSRNOG00000013579) #28	Pax5 (ENSRNOG00000024729) #29	Zcchc7 (ENSRNOG00000013078) #30	Grhpr (ENSRNOG00000012794) #31	Zbtb5 (ENSRNOG00000012726) #32	Polr1e (ENSRNOG00000012664) #33	Fbxo10 (ENSRNOG00000012634) #34	Tomm5 (ENSRNOG00000062108) #35	Frmpd1 (ENSRNOG00000012546) #36	Trmt10b (ENSRNOG00000012454) #37
Mus	ANCESTRAL SPECIES	3	ENSGT01100000267037	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i #15	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Mus_A	ANCESTRAL SPECIES	3	ENSGT01100000267037	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i #15	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Ryukyu mouse	MODERN SPECIES	13	Creb3 (MGP_CAROLIEiJ_G0025942)	Gba2 (MGP_CAROLIEiJ_G0025943)	Rgp1 (MGP_CAROLIEiJ_G0025944)	Msmp (MGP_CAROLIEiJ_G0025945)	Npr2 (MGP_CAROLIEiJ_G0025946)	Spag8 (MGP_CAROLIEiJ_G0025947) #7	Hint2 (MGP_CAROLIEiJ_G0025948) #8	Fam221b (MGP_CAROLIEiJ_G0025949) #9	Tmem8b (MGP_CAROLIEiJ_G0025950) #10	Or13e8 (MGP_CAROLIEiJ_G0025951) #11	Or13j1 (MGP_CAROLIEiJ_G0025952) #12	Hrct1 (MGP_CAROLIEiJ_G0025953) #13	MGP_CAROLIEiJ_G0025954 #18	Or13c7 (MGP_CAROLIEiJ_G0025955) ##19	Reck (MGP_CAROLIEiJ_G0025956) #20	Glipr2 (MGP_CAROLIEiJ_G0025957) #22	Ccin (MGP_CAROLIEiJ_G0025958) #23	Clta (MGP_CAROLIEiJ_G0025959) #24	Gne (MGP_CAROLIEiJ_G0025960) #25	Rnf38 (MGP_CAROLIEiJ_G0025961) #26	Melk (MGP_CAROLIEiJ_G0025962) #27	Pax5 (MGP_CAROLIEiJ_G0025963) #29	Zcchc7 (MGP_CAROLIEiJ_G0025964) #30	Grhpr (MGP_CAROLIEiJ_G0025965) #31	Zbtb5 (MGP_CAROLIEiJ_G0025966) #32	Polr1e (MGP_CAROLIEiJ_G0025967) #33	Fbxo10 (MGP_CAROLIEiJ_G0025968) #34	Frmpd1 (MGP_CAROLIEiJ_G0025969) #36	Trmt10b (MGP_CAROLIEiJ_G0025970) #37	Exosc3 (MGP_CAROLIEiJ_G0025971)	Dcaf10 (MGP_CAROLIEiJ_G0025972)
Mus_B	ANCESTRAL SPECIES	5	ENSGT01100000267037	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i #15	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Mouse	MODERN SPECIES	13	Npr2 (ENSMUSG00000028469)	Spag8 (ENSMUSG00000066196) #7	Hint2 (ENSMUSG00000028470) #8	Fam221b (ENSMUSG00000043633) #9	Tmem8b (ENSMUSG00000078716) #10	Or13e8 (ENSMUSG00000050215) #11	Or13j1 (ENSMUSG00000046450) #12	Hrct1 (ENSMUSG00000071001) #13	Spaar (ENSMUSG00000028475) #14	Or13c7d (ENSMUSG00000044801) #15	Or13c7e-ps1 (ENSMUSG00000111338) #16	Or13c7b (ENSMUSG00000110970) #17	Or13c7c (ENSMUSG00000111611) #18	Or13c7 (ENSMUSG00000071000) ##19	Reck (ENSMUSG00000028476) #20	Glipr2 (ENSMUSG00000028480) #22	Ccin (ENSMUSG00000070999) #23	Clta (ENSMUSG00000028478) #24	Gne (ENSMUSG00000028479) #25	Rnf38 (ENSMUSG00000035696) #26	Melk (ENSMUSG00000035683) #27	Pax5 (ENSMUSG00000014030) #29	Zcchc7 (ENSMUSG00000035649) #30	Grhpr (ENSMUSG00000035637) #31	Zbtb5 (ENSMUSG00000049657) #32	Polr1e (ENSMUSG00000028318) #33	Fbxo10 (ENSMUSG00000048232) #34	Tomm5 (ENSMUSG00000078713)	Frmpd1 (ENSMUSG00000035615) #36	Trmt10b (ENSMUSG00000035601) #37	Exosc3 (ENSMUSG00000028322)
Mus_C	ANCESTRAL SPECIES	2	ENSGT01100000267037	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i #15	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Steppe mouse	MODERN SPECIES	3331	Msmp (ENSMSIG00000019273)	ENSMSIG00000019283	Npr2 (ENSMSIG00000019296)	Spag8 (ENSMSIG00000019371) #7	Hint2 (ENSMSIG00000019376) #8	Fam221b (ENSMSIG00000019380) #9	Tmem8b (ENSMSIG00000019402) #10	Or13e8 (ENSMSIG00000019462) #11	Or13j1 (ENSMSIG00000019465) #12	Hrct1 (ENSMSIG00000019471) #13	Spaar (ENSMSIG00000019477) #14	Or13c7b (ENSMSIG00000019482) #17	Or13c7c (ENSMSIG00000019498) #18	Or13c7 (ENSMSIG00000019512) ##19	Reck (ENSMSIG00000019518) #20	Glipr2 (ENSMSIG00000019558) #22	Ccin (ENSMSIG00000019576) #23	Clta (ENSMSIG00000019584) #24	Gne (ENSMSIG00000019664) #25	ENSMSIG00000019729	Rnf38 (ENSMSIG00000019773) #26	Melk (ENSMSIG00000019831) #27	Pax5 (ENSMSIG00000019898) #29	Zcchc7 (ENSMSIG00000019944) #30	ENSMSIG00000019971	Grhpr (ENSMSIG00000019984) #31	Zbtb5 (ENSMSIG00000019997) #32	Polr1e (ENSMSIG00000020005) #33	Fbxo10 (ENSMSIG00000020124) #34	ENSMSIG00000020129 #35	Frmpd1 (ENSMSIG00000020143) #36
spretus	MODERN SPECIES	13	Rgp1 (MGP_SPRETEiJ_G0026905)	Msmp (MGP_SPRETEiJ_G0026906)	Npr2 (MGP_SPRETEiJ_G0026907)	Spag8 (MGP_SPRETEiJ_G0026908) #7	Hint2 (MGP_SPRETEiJ_G0026909) #8	Fam221b (MGP_SPRETEiJ_G0026910) #9	Tmem8b (MGP_SPRETEiJ_G0026911) #10	Or13e8 (MGP_SPRETEiJ_G0026912) #11	Or13j1 (MGP_SPRETEiJ_G0026913) #12	Hrct1 (MGP_SPRETEiJ_G0026914) #13	Or13c7d (MGP_SPRETEiJ_G0026915) #15	Or13c7b (MGP_SPRETEiJ_G0026916) #17	Or13c7c (MGP_SPRETEiJ_G0026917) #18	Or13c7 (MGP_SPRETEiJ_G0026918) ##19	Reck (MGP_SPRETEiJ_G0026919) #20	Glipr2 (MGP_SPRETEiJ_G0026920) #22	Ccin (MGP_SPRETEiJ_G0026921) #23	Clta (MGP_SPRETEiJ_G0026922) #24	Gne (MGP_SPRETEiJ_G0026923) #25	Rnf38 (MGP_SPRETEiJ_G0026924) #26	Melk (MGP_SPRETEiJ_G0026925) #27	Pax5 (MGP_SPRETEiJ_G0026926) #29	Zcchc7 (MGP_SPRETEiJ_G0026927) #30	Grhpr (MGP_SPRETEiJ_G0026928) #31	Zbtb5 (MGP_SPRETEiJ_G0026929) #32	Polr1e (MGP_SPRETEiJ_G0026930) #33	Fbxo10 (MGP_SPRETEiJ_G0026931) #34	Frmpd1 (MGP_SPRETEiJ_G0026932) #36	Trmt10b (MGP_SPRETEiJ_G0026933) #37	Exosc3 (MGP_SPRETEiJ_G0026934)	Dcaf10 (MGP_SPRETEiJ_G0026935)
Shrew mouse	MODERN SPECIES	14	Rgp1 (MGP_PahariEiJ_G0024089)	Msmp (MGP_PahariEiJ_G0024090)	Npr2 (MGP_PahariEiJ_G0024091)	MGP_PahariEiJ_G0024092 #7	Hint2 (MGP_PahariEiJ_G0024093) #8	Fam221b (MGP_PahariEiJ_G0024094) #9	Tmem8b (MGP_PahariEiJ_G0024095) #10	Or13e8 (MGP_PahariEiJ_G0024096) #11	Or13j1 (MGP_PahariEiJ_G0024097) #12	Hrct1 (MGP_PahariEiJ_G0024098) #13	Or13c7d (MGP_PahariEiJ_G0024099) #15	Or13c7b (MGP_PahariEiJ_G0024100) #17	MGP_PahariEiJ_G0024101 #18	Or13c7 (MGP_PahariEiJ_G0024102) ##19	Reck (MGP_PahariEiJ_G0024103) #20	Glipr2 (MGP_PahariEiJ_G0024104) #22	Ccin (MGP_PahariEiJ_G0024105) #23	Clta (MGP_PahariEiJ_G0024106) #24	Gne (MGP_PahariEiJ_G0024107) #25	Rnf38 (MGP_PahariEiJ_G0024108) #26	Melk (MGP_PahariEiJ_G0024109) #27	Pax5 (MGP_PahariEiJ_G0024110) #29	Zcchc7 (MGP_PahariEiJ_G0024111) #30	Grhpr (MGP_PahariEiJ_G0024112) #31	Zbtb5 (MGP_PahariEiJ_G0024113) #32	Polr1e (MGP_PahariEiJ_G0024114) #33	MGP_PahariEiJ_G0024115 #34	Frmpd1 (MGP_PahariEiJ_G0024116) #36	Trmt10b (MGP_PahariEiJ_G0024117) #37	Exosc3 (MGP_PahariEiJ_G0024118)	Dcaf10 (MGP_PahariEiJ_G0024119)
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i #15	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b #16	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Cricetinae	ANCESTRAL SPECIES	21	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i #15	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b #16	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Golden Hamster	MODERN SPECIES	703	Tln1 (ENSMAUG00000003449)	Creb3 (ENSMAUG00000013011)	Gba2 (ENSMAUG00000019050)	Rgp1 (ENSMAUG00000004266)	Msmp (ENSMAUG00000007922)	Npr2 (ENSMAUG00000019907)	Spag8 (ENSMAUG00000015839) #7	Hint2 (ENSMAUG00000008164) #8	Fam221b (ENSMAUG00000017909) #9	Tmem8b (ENSMAUG00000018119) #10	Or13j1 (ENSMAUG00000009473) #12	Or13c7b (ENSMAUG00000008555) #17	Or13c7c (ENSMAUG00000008725) #18	Or13c7 (ENSMAUG00000008518) ##19	Reck (ENSMAUG00000002463) #20	Glipr2 (ENSMAUG00000013684) #22	Ccin (ENSMAUG00000008789) #23	Clta (ENSMAUG00000019878) #24	Gne (ENSMAUG00000017611) #25	ENSMAUG00000015650	Rnf38 (ENSMAUG00000022251) #26	Melk (ENSMAUG00000010420) #27	Pax5 (ENSMAUG00000020146) #29	Zcchc7 (ENSMAUG00000019812) #30	Grhpr (ENSMAUG00000011406) #31	Zbtb5 (ENSMAUG00000011435) #32	Polr1e (ENSMAUG00000021044) #33	Fbxo10 (ENSMAUG00000021774) #34	ENSMAUG00000007418 #35	Frmpd1 (ENSMAUG00000001981) #36	Trmt10b (ENSMAUG00000014543) #37
Chinese hamster chok1gshd	MODERN SPECIES	111	Npr2 (ENSCGRG00001002437)	ENSCGRG00001023642 #7	Hint2 (ENSCGRG00001022361) #8	Fam221b (ENSCGRG00001021843) #9	Tmem8b (ENSCGRG00001015077) #10	Or13e8 (ENSCGRG00001003201) #11	Or13j1 (ENSCGRG00001004497) #12	Hrct1 (ENSCGRG00001004997) #13	Spaar (ENSCGRG00001003061) #14	Or13c7d (ENSCGRG00001004670) #15	Or13c7e-ps1 (ENSCGRG00001006035) #16	Or13c7b (ENSCGRG00001005118) #17	Or13c7c (ENSCGRG00001006740) #18	Or13c7 (ENSCGRG00001008125) ##19	Reck (ENSCGRG00001009973) #20	Glipr2 (ENSCGRG00001024271) #22	Ccin (ENSCGRG00001004610) #23	Clta (ENSCGRG00001019395) #24	Gne (ENSCGRG00001017139) #25	Rnf38 (ENSCGRG00001010268) #26	Melk (ENSCGRG00001005421) #27	Pax5 (ENSCGRG00001022968) #29	Zcchc7 (ENSCGRG00001018503) #30	Grhpr (ENSCGRG00001013235) #31	Zbtb5 (ENSCGRG00001005675) #32	Polr1e (ENSCGRG00001006197) #33	Fbxo10 (ENSCGRG00001004805) #34	ENSCGRG00001024499 #35	Frmpd1 (ENSCGRG00001012628) #36	Trmt10b (ENSCGRG00001006333) #37	Exosc3 (ENSCGRG00001001507)
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000154371.a	ENSGT01100000267037	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b #16	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Prairie vole	MODERN SPECIES	355	Creb3 (ENSMOCG00000023032)	Gba2 (ENSMOCG00000016185)	Rgp1 (ENSMOCG00000000839)	Msmp (ENSMOCG00000008995)	Npr2 (ENSMOCG00000015469)	Spag8 (ENSMOCG00000020967) #7	Hint2 (ENSMOCG00000022371) #8	Fam221b (ENSMOCG00000023008) #9	Tmem8b (ENSMOCG00000015023) #10	Or13j1 (ENSMOCG00000001902) #12	ENSMOCG00000010848	Or13c7e-ps1 (ENSMOCG00000002017) #16	Or13c7b (ENSMOCG00000001742) #17	Or13c7 (ENSMOCG00000005825) ##19	Reck (ENSMOCG00000012329) #20	Glipr2 (ENSMOCG00000012349) #22	Ccin (ENSMOCG00000008266) #23	Clta (ENSMOCG00000018642) #24	Gne (ENSMOCG00000013723) #25	Rnf38 (ENSMOCG00000021070) #26	Melk (ENSMOCG00000018453) #27	Pax5 (ENSMOCG00000017791) #29	Zcchc7 (ENSMOCG00000017184) #30	Grhpr (ENSMOCG00000013657) #31	Zbtb5 (ENSMOCG00000001112) #32	Polr1e (ENSMOCG00000012920) #33	Fbxo10 (ENSMOCG00000015296) #34	ENSMOCG00000020239 #35	Frmpd1 (ENSMOCG00000012183) #36	Trmt10b (ENSMOCG00000016559) #37	Exosc3 (ENSMOCG00000018110)
Northern American deer mouse	MODERN SPECIES	11	Msmp (ENSPEMG00000009985)	ENSPEMG00000025084	Npr2 (ENSPEMG00000008535)	Spag8 (ENSPEMG00000008861) #7	Hint2 (ENSPEMG00000014390) #8	Fam221b (ENSPEMG00000018305) #9	Tmem8b (ENSPEMG00000017226) #10	Or13e8 (ENSPEMG00000031317) #11	Or13j1 (ENSPEMG00000006836) #12	Hrct1 (ENSPEMG00000030660) #13	Spaar (ENSPEMG00000030980) #14	ENSPEMG00000027811 #16	ENSPEMG00000006666 #16	ENSPEMG00000029865 #16	Reck (ENSPEMG00000016931) #20	Glipr2 (ENSPEMG00000008180) #22	Ccin (ENSPEMG00000005922) #23	Clta (ENSPEMG00000016605) #24	Gne (ENSPEMG00000016886) #25	Rnf38 (ENSPEMG00000002845) #26	ENSPEMG00000027413	Melk (ENSPEMG00000015387) #27	Pax5 (ENSPEMG00000013014) #29	Zcchc7 (ENSPEMG00000017839) #30	Grhpr (ENSPEMG00000012140) #31	Zbtb5 (ENSPEMG00000012944) #32	Polr1e (ENSPEMG00000019151) #33	Fbxo10 (ENSPEMG00000016867) #34	ENSPEMG00000013814 #35	ENSPEMG00000030225	Frmpd1 (ENSPEMG00000014452) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1399													Or13c7b (ENSNGAG00000000272) #17	Or13c7c (ENSNGAG00000014920) #18	Reck (ENSNGAG00000000317) #20	Glipr2 (ENSNGAG00000017672) #22	Ccin (ENSNGAG00000014353) #23	Clta (ENSNGAG00000000463) #24	Gne (ENSNGAG00000013811) #25	Rnf38 (ENSNGAG00000016714) #26	ENSNGAG00000015087	Melk (ENSNGAG00000017903) #27	ENSNGAG00000000934	Pax5 (ENSNGAG00000011551) #29	Zcchc7 (ENSNGAG00000001898) #30	Grhpr (ENSNGAG00000018848) #31	Zbtb5 (ENSNGAG00000013653) #32	Polr1e (ENSNGAG00000002520) #33	Fbxo10 (ENSNGAG00000018904) #34	ENSNGAG00000017070 #35	Frmpd1 (ENSNGAG00000016054) #36
Lesser Egyptian jerboa	MODERN SPECIES	66	Arhgef39 (ENSJJAG00000010069)	Car9 (ENSJJAG00000009793)	ENSJJAG00000000463	Tln1 (ENSJJAG00000007186)	Creb3 (ENSJJAG00000003441)	Gba2 (ENSJJAG00000020885)	Msmp (ENSJJAG00000004151)	Rgp1 (ENSJJAG00000016667)	Npr2 (ENSJJAG00000021290)	Spag8 (ENSJJAG00000016823) #7	Hint2 (ENSJJAG00000005863) #8	ENSJJAG00000018868 #9	ENSJJAG00000013795 #10	Or13e8 (ENSJJAG00000012082) #11	Reck (ENSJJAG00000022950) #20	Glipr2 (ENSJJAG00000018465) #22	Ccin (ENSJJAG00000002839) #23	Pax5 (ENSJJAG00000018900) #29	ENSJJAG00000010512 #30	Polr1e (ENSJJAG00000020731) #33	Fbxo10 (ENSJJAG00000016171) #34	ENSJJAG00000011290 #35	Frmpd1 (ENSJJAG00000014679) #36	ENSJJAG00000011255	Shb (ENSJJAG00000000259)	Aldh1b1 (ENSJJAG00000002242)	Stra6l (ENSJJAG00000014770)	Ccdc180 (ENSJJAG00000020108)	Tdrd7 (ENSJJAG00000012908)	Tmod1 (ENSJJAG00000006511)	Tstd2 (ENSJJAG00000018130)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	371	Steap3 (ENSDORG00000002627)	ENSDORG00000026249	Tmem37 (ENSDORG00000003687)	Sctr (ENSDORG00000003688)	ENSDORG00000025111	Tmem177 (ENSDORG00000002047)	ENSDORG00000029148	Epb41l5 (ENSDORG00000010402)	Tmem185b (ENSDORG00000024131)	Ralb (ENSDORG00000012929)	Inhbb (ENSDORG00000000026)	Gli2 (ENSDORG00000008299)	Tfcp2l1 (ENSDORG00000004265)	Clasp1 (ENSDORG00000004810)	Tsn (ENSDORG00000026251)	ENSDORG00000029691 #22	Gypc (ENSDORG00000009142)	Bin1 (ENSDORG00000007085)	Ercc3 (ENSDORG00000004671)	Map3k2 (ENSDORG00000028775)	ENSDORG00000004000	Ccdc115 (ENSDORG00000024377)	Imp4 (ENSDORG00000010685)	Ptpn18 (ENSDORG00000010682)	ENSDORG00000013250	Amer3 (ENSDORG00000023726)	ENSDORG00000026679
Kangaroo rat	MODERN SPECIES	414	Car9 (ENSDORG00000014587)	Tpm2 (ENSDORG00000006246)	Tln1 (ENSDORG00000006249)	Creb3 (ENSDORG00000029821)	Gba2 (ENSDORG00000006257)	Rgp1 (ENSDORG00000006258)	Msmp (ENSDORG00000025071)	Npr2 (ENSDORG00000006262)	Hint2 (ENSDORG00000006268) #8	ENSDORG00000006271 #10	Or13j1 (ENSDORG00000006274) #12	Hrct1 (ENSDORG00000029256) #13	ENSDORG00000015734 #19	Or13c7c (ENSDORG00000026683) #18	Reck (ENSDORG00000012827) #20	ENSDORG00000012831 #22	Ccin (ENSDORG00000012835) #23	Clta (ENSDORG00000005019) #24	Gne (ENSDORG00000005022) #25	Rnf38 (ENSDORG00000005357) #26	ENSDORG00000028581	Melk (ENSDORG00000015636) #27	Pax5 (ENSDORG00000015818) #29	ENSDORG00000013166 #30	Grhpr (ENSDORG00000013167) #31	Zbtb5 (ENSDORG00000013170) #32	ENSDORG00000026463 #33	Fbxo10 (ENSDORG00000015479) #34	ENSDORG00000028709 #35	Frmpd1 (ENSDORG00000014364) #36	Trmt10b (ENSDORG00000014365) #37
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b.a #36	ENSGT00950000183035.b.b #36	ENSGT00530000063169.b.a #37
Marmotini	ANCESTRAL SPECIES	1	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00960000190987	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Marmotini_b	ANCESTRAL SPECIES	2	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT00960000190987	ENSGT00510000049544 #13	ENSGT00850000133592 #14	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.a ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##19	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Squirrel	MODERN SPECIES	124	RGP1 (ENSSTOG00000005260)	MSMP (ENSSTOG00000019953)	NPR2 (ENSSTOG00000006885)	SPAG8 (ENSSTOG00000031721) #7	HINT2 (ENSSTOG00000006975) #8	FAM221B (ENSSTOG00000026697) #9	TMEM8B (ENSSTOG00000007004) #10	ENSSTOG00000007067 #11	OR13J1 (ENSSTOG00000019968) #12	HRCT1 (ENSSTOG00000029426) #13	ENSSTOG00000022728 ##19	ENSSTOG00000027055 #17	ENSSTOG00000019481 #18	ENSSTOG00000028123 ##19	RECK (ENSSTOG00000004971) #20	GLIPR2 (ENSSTOG00000005016) #22	CCIN (ENSSTOG00000022524) #23	CLTA (ENSSTOG00000005034) #24	GNE (ENSSTOG00000005049) #25	RNF38 (ENSSTOG00000005075) #26	MELK (ENSSTOG00000005106) #27	PAX5 (ENSSTOG00000024354) #29	ZCCHC7 (ENSSTOG00000030723) #30	GRHPR (ENSSTOG00000009804) #31	ZBTB5 (ENSSTOG00000027806) #32	POLR1E (ENSSTOG00000009810) #33	FBXO10 (ENSSTOG00000009819) #34	TOMM5 (ENSSTOG00000031862) #35	FRMPD1 (ENSSTOG00000009836) #36	TRMT10B (ENSSTOG00000024001) #37	EXOSC3 (ENSSTOG00000009859)
Arctic ground squirrel	MODERN SPECIES	19	RGP1 (ENSUPAG00010017697)	NPR2 (ENSUPAG00010017675)	ENSUPAG00010017666 #7	HINT2 (ENSUPAG00010017657) #8	FAM221B (ENSUPAG00010017647) #9	TMEM8B (ENSUPAG00010017633) #10	ENSUPAG00010017627 #11	OR13J1 (ENSUPAG00010017625) #12	ENSUPAG00010017622	HRCT1 (ENSUPAG00010017619) #13	SPAAR (ENSUPAG00010017615) #14	ENSUPAG00010017611 ##19	ENSUPAG00010017609 ##19	ENSUPAG00010017603 #18	RECK (ENSUPAG00010017580) #20	GLIPR2 (ENSUPAG00010017575) #22	CCIN (ENSUPAG00010017573) #23	CLTA (ENSUPAG00010017440) #24	GNE (ENSUPAG00010017395) #25	RNF38 (ENSUPAG00010017340) #26	MELK (ENSUPAG00010017322) #27	ENSUPAG00010017319	PAX5 (ENSUPAG00010016838) #29	ZCCHC7 (ENSUPAG00010016816) #30	GRHPR (ENSUPAG00010016805) #31	ZBTB5 (ENSUPAG00010016792) #32	POLR1E (ENSUPAG00010016755) #33	FBXO10 (ENSUPAG00010016739) #34	TOMM5 (ENSUPAG00010016729) #35	FRMPD1 (ENSUPAG00010016707) #36	TRMT10B (ENSUPAG00010016693) #37
Alpin marmot	MODERN SPECIES	30	RGP1 (ENSMMMG00000006680)	NPR2 (ENSMMMG00000006654)	SPAG8 (ENSMMMG00000006625) #7	HINT2 (ENSMMMG00000006620) #8	FAM221B (ENSMMMG00000006612) #9	TMEM8B (ENSMMMG00000006563) #10	OR13J1 (ENSMMMG00000006552) #12	ENSMMMG00000006544	HRCT1 (ENSMMMG00000006538) #13	ENSMMMG00000006522 ##19	ENSMMMG00000006506 ##19	ENSMMMG00000006499 #18	ENSMMMG00000006479 ##19	RECK (ENSMMMG00000006434) #20	ENSMMMG00000006426	GLIPR2 (ENSMMMG00000006416) #22	CCIN (ENSMMMG00000006403) #23	CLTA (ENSMMMG00000006329) #24	GNE (ENSMMMG00000006274) #25	RNF38 (ENSMMMG00000006231) #26	MELK (ENSMMMG00000006206) #27	PAX5 (ENSMMMG00000005750) #29	ENSMMMG00000005736	ZCCHC7 (ENSMMMG00000005723) #30	GRHPR (ENSMMMG00000005712) #31	ZBTB5 (ENSMMMG00000005710) #32	POLR1E (ENSMMMG00000005675) #33	FBXO10 (ENSMMMG00000005655) #34	TOMM5 (ENSMMMG00000005643) #35	FRMPD1 (ENSMMMG00000005612) #36	TRMT10B (ENSMMMG00000005605) #37
Eurasian red squirrel	MODERN SPECIES	6	FAM221B (ENSSVLG00005024528) #9	TMEM8B (ENSSVLG00005024565) #10	ENSSVLG00005024620 #11	ENSSVLG00005024639 #11	ENSSVLG00005024658 #11	OR13J1 (ENSSVLG00005024676) #12	HRCT1 (ENSSVLG00005024684) #13	SPAAR (ENSSVLG00005024697) #14	ENSSVLG00005024708 ##19	ENSSVLG00005024725 #17	ENSSVLG00005024734 #18	ENSSVLG00005013722 ##19	ENSSVLG00005013774	RECK (ENSSVLG00005013970) #20	ENSSVLG00005014201	GLIPR2 (ENSSVLG00005014266) #22	CCIN (ENSSVLG00005014341) #23	CLTA (ENSSVLG00005014370) #24	ENSSVLG00005014548	GNE (ENSSVLG00005014623) #25	ENSSVLG00005014854	RNF38 (ENSSVLG00005014911) #26	MELK (ENSSVLG00005015313) #27	ENSSVLG00005016415	PAX5 (ENSSVLG00005016527) #29	ZCCHC7 (ENSSVLG00005017311) #30	GRHPR (ENSSVLG00005017339) #31	ZBTB5 (ENSSVLG00005017378) #32	POLR1E (ENSSVLG00005017394) #33	FBXO10 (ENSSVLG00005017431) #34	TOMM5 (ENSSVLG00005017466) #35
Hystricomorpha	ANCESTRAL SPECIES	7	ENSGT00940000160343	ENSGT00390000010998	ENSGT00390000006136	ENSGT00940000154371.a	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Naked mole-rat female	MODERN SPECIES	3	ACER2 (ENSHGLG00000042194)	ENSHGLG00000007103	SLC24A2 (ENSHGLG00000013244)	ENSHGLG00000035978	MLLT3 (ENSHGLG00000010560)	ENSHGLG00000039414	ENSHGLG00000042372	ENSHGLG00000017554	FOCAD (ENSHGLG00000010449)	PTPLAD2 (ENSHGLG00000015090)	ENSHGLG00000009375	ENSHGLG00000040693	ENSHGLG00000020519 #18	ENSHGLG00000020691 #19	ENSHGLG00000006983 #20	ENSHGLG00000018870 #22	ENSHGLG00000006265	ENSHGLG00000019003	ENSHGLG00000005687 #24	ENSHGLG00000003036 #25	ENSHGLG00000007302	ENSHGLG00000044890	ENSHGLG00000006210	ENSHGLG00000037708	ENSHGLG00000004959	ENSHGLG00000011793	ENSHGLG00000005602	ENSHGLG00000000210	ENSHGLG00000035491	ENSHGLG00000041847	ENSHGLG00000006616
Hystricomorpha_a	ANCESTRAL SPECIES	5	ENSGT00940000160343	ENSGT00390000010998	ENSGT00390000006136	ENSGT00940000154371.a	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Guinea pig	MODERN SPECIES	27	GBA2 (ENSCPOG00000000410)	RGP1 (ENSCPOG00000000412)	MSMP (ENSCPOG00000030922)	NPR2 (ENSCPOG00000000414)	ENSCPOG00000034450 #7	HINT2 (ENSCPOG00000040327) #8	FAM221B (ENSCPOG00000022477) #9	TMEM8B (ENSCPOG00000024197) #10	ENSCPOG00000022117 #11	OR13J1 (ENSCPOG00000006373) #12	ENSCPOG00000015207 #19	ENSCPOG00000030507 #19	ENSCPOG00000031231 #18	ENSCPOG00000020464 #19	RECK (ENSCPOG00000006953) #20	GLIPR2 (ENSCPOG00000013329) #22	ENSCPOG00000035667 #23	ENSCPOG00000040417 #23	CLTA (ENSCPOG00000013495) #24	GNE (ENSCPOG00000003113) #25	RNF38 (ENSCPOG00000023073) #26	MELK (ENSCPOG00000014591) #27	PAX5 (ENSCPOG00000009987) #29	ZCCHC7 (ENSCPOG00000013472) #30	GRHPR (ENSCPOG00000012676) #31	POLR1E (ENSCPOG00000009965) #33	FBXO10 (ENSCPOG00000023734) #34	TOMM5 (ENSCPOG00000040729) #35	FRMPD1 (ENSCPOG00000008617) #36	TRMT10B (ENSCPOG00000008629) #37	EXOSC3 (ENSCPOG00000008634)
Hystricomorpha_b	ANCESTRAL SPECIES	11	ENSGT00940000160343	ENSGT00390000010998	ENSGT00390000006136	ENSGT00940000154371.a	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #17	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #19	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A	ENSGT00390000012666
Degu	DUPLICATION
Degu	MODERN SPECIES	86	MSMP (ENSODEG00000014843)	NPR2 (ENSODEG00000013759)	ENSODEG00000014871 #7	HINT2 (ENSODEG00000013829) #8	ENSODEG00000014805 #10	OR13J1 (ENSODEG00000020303) #12	ENSODEG00000020228 #19	ENSODEG00000014986 #19	ENSODEG00000020137	ENSODEG00000020163 #17	ENSODEG00000020239 #18	ENSODEG00000020178 #19	ENSODEG00000020150	ENSODEG00000014606	RECK (ENSODEG00000015090) #20	ENSODEG00000013847 #22	ENSODEG00000020318 #23	ENSODEG00000020206 #23	ENSODEG00000015178 #24	GNE (ENSODEG00000014784) #25	RNF38 (ENSODEG00000014850) #26	ENSODEG00000015450	MELK (ENSODEG00000015169) #27	PAX5 (ENSODEG00000014314) #29	ENSODEG00000014628 #31	ZBTB5 (ENSODEG00000013905) #32	POLR1E (ENSODEG00000014565) #33	FBXO10 (ENSODEG00000013432) #34	FRMPD1 (ENSODEG00000016482) #36	ENSODEG00000014904	DCAF10 (ENSODEG00000015520)
Degu	MODERN SPECIES	296										ENSODEG00000000552	ENSODEG00000000567	ENSODEG00000000580	ENSODEG00000000592	ENSODEG00000018618	ENSODEG00000000602	ENSODEG00000018667 #22	ENSODEG00000001156	ENSODEG00000018765	ENSODEG00000001186	ENSODEG00000001196	ENSODEG00000001234	ENSODEG00000001248	ENSODEG00000001317	ENSODEG00000018656	ENSODEG00000001352	ENSODEG00000018550
Long-tailed chinchilla	MODERN SPECIES	179	CREB3 (ENSCLAG00000007023)	GBA2 (ENSCLAG00000006092)	RGP1 (ENSCLAG00000005768)	MSMP (ENSCLAG00000005738)	NPR2 (ENSCLAG00000002859)	SPAG8 (ENSCLAG00000002720) #7	ENSCLAG00000002682 #8	FAM221B (ENSCLAG00000002631) #9	TMEM8B (ENSCLAG00000002381) #10	ENSCLAG00000002334 #11	OR13J1 (ENSCLAG00000017499) #12	ENSCLAG00000002148 #17	ENSCLAG00000001840 #18	ENSCLAG00000001831 #19	RECK (ENSCLAG00000001740) #20	GLIPR2 (ENSCLAG00000001571) #22	CLTA (ENSCLAG00000001549) #24	GNE (ENSCLAG00000001475) #25
Lagomorpha	ANCESTRAL SPECIES	23	ENSGT01030000234542.b.b.a.b	ENSGT00940000157006	ENSGT00940000160343	ENSGT00390000010998	ENSGT00390000006136	ENSGT00940000154371.a	ENSGT00940000156985	ENSGT00640000091617 #7	ENSGT00940000157905 #8	ENSGT00770000120611.A #9	ENSGT00940000157861 #10	ENSGT00940000164268 #11	ENSGT01040000240406.A.a #12	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #18	ENSGT00390000018540 #20	ENSGT00390000020276.rb #22	ENSGT00940000162268 #23	ENSGT00940000157347 #24	ENSGT00390000017246 #25	ENSGT00940000156228 #26	ENSGT00940000154889 #27	ENSGT00940000159636 #29	ENSGT00950000183041.B #30	ENSGT00940000158578 #31	ENSGT00940000160246 #32	ENSGT00390000018004 #33	ENSGT00530000063425.a.a.a.b #34	ENSGT00940000163364 #35	ENSGT00950000183035.b #36	ENSGT00530000063169.b.a #37	ENSGT00940000153596.A
Rabbit	MODERN SPECIES		GBA2 (ENSOCUG00000010248)	MSMP (ENSOCUG00000027782)	RGP1 (ENSOCUG00000010265)	NPR2 (ENSOCUG00000006453)	SPAG8 (ENSOCUG00000006464) #7	ENSOCUG00000027206 #8	TMEM8B (ENSOCUG00000016636) #10	ENSOCUG00000016631 #9	ENSOCUG00000026831 #11	OR13J1 (ENSOCUG00000016656) #12	ENSOCUG00000034207 #18	ENSOCUG00000027037 #18	ENSOCUG00000034869 #18	ENSOCUG00000011572 #18	RECK (ENSOCUG00000015652) #20	GLIPR2 (ENSOCUG00000000007) #22	CCIN (ENSOCUG00000000008) #23	CLTA (ENSOCUG00000000009) #24	GNE (ENSOCUG00000000010) #25	ENSOCUG00000014164 #26	MELK (ENSOCUG00000001041) #27	PAX5 (ENSOCUG00000012281) #29	ENSOCUG00000030564	ENSOCUG00000022333	ZCCHC7 (ENSOCUG00000001002) #30	GRHPR (ENSOCUG00000007031) #31	ZBTB5 (ENSOCUG00000007041) #32	POLR1E (ENSOCUG00000024773) #33	FBXO10 (ENSOCUG00000001992) #34	TOMM5 (ENSOCUG00000001996) #35	FRMPD1 (ENSOCUG00000000068) #36
Pika	MODERN SPECIES	10341																GLIPR2 (ENSOPRG00000009301) #22	CCIN (ENSOPRG00000009318) #23
Tree shrew	MODERN SPECIES	3735															RECK (ENSTBEG00000008707) #20	GLIPR2 (ENSTBEG00000009276) #22	CCIN (ENSTBEG00000009476) #23