Tetrapoda	ANCESTRAL SPECIES	79	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000013943	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00420000030417	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36
Amniota	ANCESTRAL SPECIES	1	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089 #9	ENSGT00940000162065 #7	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00420000030417	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Mammalia	ANCESTRAL SPECIES	2	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089 #9	ENSGT00940000162065 #7	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00420000030417	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Theria	ANCESTRAL SPECIES	4	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000168329	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00420000030417	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Eutheria	ANCESTRAL SPECIES	9	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00420000030417	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Glires	ANCESTRAL SPECIES	5	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Rodentia	ANCESTRAL SPECIES	6	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Hystricomorpha	ANCESTRAL SPECIES	53	ENSGT01030000234626.B	ENSGT00940000161879	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00390000014904
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES		SLC22A1 (ENSHGLG00000017500) #7	ENSHGLG00000014427 #8	ENSHGLG00000017482 #9	ENSHGLG00000034005 #10	ENSHGLG00000050994 #11	ENSHGLG00000017477 #12	ENSHGLG00000017452 #13	MAP3K4 (ENSHGLG00000011068) #14	AGPAT4 (ENSHGLG00000008163) #15	ENSHGLG00000034284 #16	PRKN (ENSHGLG00000006873) #17	ENSHGLG00000050950 #18	ENSHGLG00000041594 #19	PACRG (ENSHGLG00000048524) #20	ENSHGLG00000040590 #21	QKI (ENSHGLG00000003074) #22	ENSHGLG00000020018 #23	ENSHGLG00000033943 #24	ENSHGLG00000002800 #25	C6orf118 (ENSHGLG00000040311) #26	PDE10A (ENSHGLG00000003609) #27	TBXT (ENSHGLG00000002638) #28	ENSHGLG00000041990 #29	ENSHGLG00000040761 #30	ENSHGLG00000032835 #31	ENSHGLG00000049190 #32	SFT2D1 (ENSHGLG00000002919) #33	MPC1 (ENSHGLG00000034371) #34	RPS6KA2 (ENSHGLG00000003392) #35	ENSHGLG00000002675 #36	ENSHGLG00000003848 #37
Naked mole-rat female	MODERN SPECIES	4	ENSHGLG00000040711	ENSHGLG00000019550	ENSHGLG00000000110	CYP2E1 (ENSHGLG00000017022)	ENSHGLG00000048896	ENSHGLG00000014212	ENSHGLG00000049345	ENSHGLG00000043421	ENSHGLG00000032317	ENSHGLG00000033697	ENSHGLG00000049329	ENSHGLG00000037889	ENSHGLG00000044637	ENSHGLG00000020629	ENSHGLG00000020573	ENSHGLG00000034029 ##22	ENSHGLG00000034938	ENSHGLG00000042935	ENSHGLG00000020866	ENSHGLG00000021063	SPRN (ENSHGLG00000040631)	MTG1 (ENSHGLG00000009989)	PAOX (ENSHGLG00000013497)	ENSHGLG00000014415	FUOM (ENSHGLG00000011771)	PRAP1 (ENSHGLG00000049443)	CALY (ENSHGLG00000034815)	ENSHGLG00000034033	ZNF511 (ENSHGLG00000018509)	TUBGCP2 (ENSHGLG00000016768)	ADAM8 (ENSHGLG00000041572)
Hystricomorpha_a	ANCESTRAL SPECIES	30	ENSGT01030000234626.B	ENSGT00940000161879	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00390000014904
Guinea pig	MODERN SPECIES	60	SOD2 (ENSCPOG00000036439)	WTAP (ENSCPOG00000001669)	ACAT2 (ENSCPOG00000001672)	TCP1 (ENSCPOG00000001676)	MRPL18 (ENSCPOG00000040103)	PNLDC1 (ENSCPOG00000019565)	MAS1 (ENSCPOG00000000027)	IGF2R (ENSCPOG00000013207)	SLC22A2 (ENSCPOG00000001527) #9	SLC22A3 (ENSCPOG00000010127) #12	ENSCPOG00000011605 #13	MAP3K4 (ENSCPOG00000013392) #14	AGPAT4 (ENSCPOG00000006135) #15	PRKN (ENSCPOG00000006136) #17	PACRG (ENSCPOG00000013410) #20	QKI (ENSCPOG00000003424) #22	C6orf118 (ENSCPOG00000008774) #26	PDE10A (ENSCPOG00000008783) #27	TBXT (ENSCPOG00000001358) #28	ENSCPOG00000000167	SFT2D1 (ENSCPOG00000031625) #33	MPC1 (ENSCPOG00000005208) #34	RPS6KA2 (ENSCPOG00000005210) #35	RNASET2 (ENSCPOG00000007899) #36	CEP43 (ENSCPOG00000036620) #37	CCR6 (ENSCPOG00000034828)	GPR31 (ENSCPOG00000001786)	ENSCPOG00000009004	UNC93A (ENSCPOG00000031556)	AFDN (ENSCPOG00000008268)	ENSCPOG00000002358
Hystricomorpha_b	ANCESTRAL SPECIES	29	ENSGT01030000234626.B	ENSGT00940000161879	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701
Degu	MODERN SPECIES	153	IGF2R (ENSODEG00000007106)	ENSODEG00000019312	SLC22A1 (ENSODEG00000007862) #7	SLC22A2 (ENSODEG00000007315) #9	ENSODEG00000007010	ENSODEG00000006583	SLC22A3 (ENSODEG00000006460) #12	ENSODEG00000009894 #13	ENSODEG00000006455	ENSODEG00000019262	ENSODEG00000006392 #14	ENSODEG00000006672 #14	AGPAT4 (ENSODEG00000007571) #15	PRKN (ENSODEG00000006701) #17	PACRG (ENSODEG00000009517) #20	QKI (ENSODEG00000007408) #22	ENSODEG00000019307	ENSODEG00000019798
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	146	ACAT2 (ENSCLAG00000009441)	ENSCLAG00000009354	ENSCLAG00000012133	MRPL18 (ENSCLAG00000012045)	PNLDC1 (ENSCLAG00000003228)	MAS1 (ENSCLAG00000017515)	IGF2R (ENSCLAG00000002642)	SLC22A1 (ENSCLAG00000002646) #7	SLC22A2 (ENSCLAG00000002562) #9	SLC22A3 (ENSCLAG00000002492) #12	ENSCLAG00000002399 #13	MAP3K4 (ENSCLAG00000008769) #14	AGPAT4 (ENSCLAG00000008421) #15	PRKN (ENSCLAG00000008284) #17	PACRG (ENSCLAG00000008105) #20	ENSCLAG00000006238 #22	C6orf118 (ENSCLAG00000006108) #26	PDE10A (ENSCLAG00000004872) #27	TBXT (ENSCLAG00000002632) #28	SFT2D1 (ENSCLAG00000002586) #33	MPC1 (ENSCLAG00000002442) #34	RPS6KA2 (ENSCLAG00000002285) #35	RNASET2 (ENSCLAG00000005811) #36	CEP43 (ENSCLAG00000005200) #37	CCR6 (ENSCLAG00000005134)	ENSCLAG00000004820	UNC93A (ENSCLAG00000004396)	AFDN (ENSCLAG00000003013)	ADGB (ENSCLAG00000004642)	STXBP5 (ENSCLAG00000004159)	SASH1 (ENSCLAG00000003367)
Long-tailed chinchilla	MODERN SPECIES	146	ENSCLAG00000004035	VIP (ENSCLAG00000004151)	MYCT1 (ENSCLAG00000004202)	ENSCLAG00000002479	ENSCLAG00000002568	ENSCLAG00000002772	ESR1 (ENSCLAG00000003026)	CCDC170 (ENSCLAG00000003105)	ARMT1 (ENSCLAG00000003161)	ENSCLAG00000003248	ZBTB2 (ENSCLAG00000003435)	AKAP12 (ENSCLAG00000003496)	MTHFD1L (ENSCLAG00000003603)	PLEKHG1 (ENSCLAG00000004103)	IYD (ENSCLAG00000002712)	ENSCLAG00000002777 #22	ENSCLAG00000003173	PCMT1 (ENSCLAG00000003224)	NUP43 (ENSCLAG00000003394)	LATS1 (ENSCLAG00000003449)	KATNA1 (ENSCLAG00000003505)	GINM1 (ENSCLAG00000003584)	PPIL4 (ENSCLAG00000003991)	ZC3H12D (ENSCLAG00000002831)	TAB2 (ENSCLAG00000002977)	UST (ENSCLAG00000003051)	SASH1 (ENSCLAG00000003367)	STXBP5 (ENSCLAG00000004159)	ADGB (ENSCLAG00000004642)	AFDN (ENSCLAG00000003013)	UNC93A (ENSCLAG00000004396)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237
Eurasian red squirrel	MODERN SPECIES	16	MRPL18 (ENSSVLG00005014946)	ENSSVLG00005014568	MAS1 (ENSSVLG00005014545)	ENSSVLG00005014490	IGF2R (ENSSVLG00005013999)	SLC22A1 (ENSSVLG00005013724) #7	SLC22A2 (ENSSVLG00005013453) #9	SLC22A3 (ENSSVLG00005013302) #12	ENSSVLG00005013240 #13	ENSSVLG00005013165 #13	ENSSVLG00005013042 #13	MAP3K4 (ENSSVLG00005011972) #14	AGPAT4 (ENSSVLG00005011803) #15	PRKN (ENSSVLG00005011292) #17	PACRG (ENSSVLG00005011174) #20	QKI (ENSSVLG00005011023) #22	C6orf118 (ENSSVLG00005010851) #26	PDE10A (ENSSVLG00005010372) #27	ENSSVLG00005010236	TBXT (ENSSVLG00005010149) #28	PRR18 (ENSSVLG00005010120) #32	SFT2D1 (ENSSVLG00005010090) #33	MPC1 (ENSSVLG00005009984) #34	ENSSVLG00005009943	ENSSVLG00005009919	ENSSVLG00005009894	RPS6KA2 (ENSSVLG00005009658) #35	RNASET2 (ENSSVLG00005009530) #36	CEP43 (ENSSVLG00005009283) #37	CCR6 (ENSSVLG00005009206)	ENSSVLG00005009071
Marmotini	ANCESTRAL SPECIES	11	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000015545.v	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237
Alpin marmot	MODERN SPECIES	55	TCP1 (ENSMMMG00000009649)	MRPL18 (ENSMMMG00000009635)	PNLDC1 (ENSMMMG00000009617)	ENSMMMG00000009610	MAS1 (ENSMMMG00000009593)	IGF2R (ENSMMMG00000009520)	SLC22A1 (ENSMMMG00000009498) #7	SLC22A2 (ENSMMMG00000009474) #9	SLC22A3 (ENSMMMG00000009457) #12	ENSMMMG00000009428 #13	MAP3K4 (ENSMMMG00000009318) #14	AGPAT4 (ENSMMMG00000009306) #15	ENSMMMG00000009285	PRKN (ENSMMMG00000009240) #17	PACRG (ENSMMMG00000009213) #20	QKI (ENSMMMG00000009192) #22	ENSMMMG00000009166 #26	PDE10A (ENSMMMG00000009083) #27	TBXT (ENSMMMG00000009058) #28	ENSMMMG00000009041 #31	MPC1 (ENSMMMG00000009012) #34	RPS6KA2 (ENSMMMG00000008982) #35	RNASET2 (ENSMMMG00000008966) #36	ENSMMMG00000008953 #37	CCR6 (ENSMMMG00000008925)	ENSMMMG00000008905	FRMD1 (ENSMMMG00000008833)	KIF25 (ENSMMMG00000008818)	AFDN (ENSMMMG00000008187)	UNC93A (ENSMMMG00000008150)	DACT2 (ENSMMMG00000008118)
Marmotini_b	ANCESTRAL SPECIES	56	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000015545.v	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237
Arctic ground squirrel	MODERN SPECIES	116					IGF2R (ENSUPAG00010011620)	SLC22A1 (ENSUPAG00010011671) #7	SLC22A2 (ENSUPAG00010011687) #9	SLC22A3 (ENSUPAG00010011704) #12	ENSUPAG00010011719 #13	MAP3K4 (ENSUPAG00010011747) #14	ENSUPAG00010011827	AGPAT4 (ENSUPAG00010011837) #15	PRKN (ENSUPAG00010011852) #17	ENSUPAG00010011891	PACRG (ENSUPAG00010011904) #20	QKI (ENSUPAG00010011918) #22	ENSUPAG00010011964 #26	PDE10A (ENSUPAG00010011970) #27	TBXT (ENSUPAG00010012160) #28	PRR18 (ENSUPAG00010012167) #32	SFT2D1 (ENSUPAG00010012170) #33
Squirrel	MODERN SPECIES	89	ENSSTOG00000005572	MRPL18 (ENSSTOG00000005583)	PNLDC1 (ENSSTOG00000005595)	ENSSTOG00000026373	MAS1 (ENSSTOG00000029761)	IGF2R (ENSSTOG00000008960)	SLC22A1 (ENSSTOG00000009024) #7	SLC22A2 (ENSSTOG00000010147) #9	SLC22A3 (ENSSTOG00000007036) #12	ENSSTOG00000020315 #13	MAP3K4 (ENSSTOG00000002821) #14	AGPAT4 (ENSSTOG00000002544) #15	PRKN (ENSSTOG00000021965) #17	ENSSTOG00000034364	PACRG (ENSSTOG00000010375) #20	QKI (ENSSTOG00000009113) #22	C6orf118 (ENSSTOG00000020468) #26	PDE10A (ENSSTOG00000001947) #27	TBXT (ENSSTOG00000028238) #28	SFT2D1 (ENSSTOG00000031211) #33	MPC1 (ENSSTOG00000024720) #34	RPS6KA2 (ENSSTOG00000005318) #35	RNASET2 (ENSSTOG00000010853) #36	CEP43 (ENSSTOG00000028679) #37	CCR6 (ENSSTOG00000022381)	GPR31 (ENSSTOG00000002401)	ENSSTOG00000025800	ENSSTOG00000002281	FRMD1 (ENSSTOG00000019365)	KIF25 (ENSSTOG00000027308)	AFDN (ENSSTOG00000014943)
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Kangaroo rat	MODERN SPECIES	396	Sod2 (ENSDORG00000001358)	ENSDORG00000026059	ENSDORG00000011505	ENSDORG00000011510	Pnldc1 (ENSDORG00000011517)	Mas1 (ENSDORG00000003320)	Igf2r (ENSDORG00000009527)	Slc22a1 (ENSDORG00000011523) #7	Slc22a2 (ENSDORG00000008400) #9	Slc22a3 (ENSDORG00000008402) #12	Plg (ENSDORG00000024248) #13	ENSDORG00000025664 #14	Agpat4 (ENSDORG00000015627) #15	ENSDORG00000027142 #17	ENSDORG00000026934 #20	Qki (ENSDORG00000008151) #22	Pde10a (ENSDORG00000005783) #27	ENSDORG00000012736 #28	ENSDORG00000010309 #33	Rps6ka2 (ENSDORG00000007779) #35	ENSDORG00000011636 #36	Cep43 (ENSDORG00000004815) #37	Ccr6 (ENSDORG00000012594)	ENSDORG00000012694	Afdn (ENSDORG00000010887)	ENSDORG00000003713	Smoc2 (ENSDORG00000006153)	Thbs2 (ENSDORG00000005713)	Wdr27 (ENSDORG00000010049)	Phf10 (ENSDORG00000013350)	ENSDORG00000014079
Myomorpha	ANCESTRAL SPECIES	21	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Lesser Egyptian jerboa	MODERN SPECIES	44	ENSJJAG00000022555	ENSJJAG00000019850	Pnldc1 (ENSJJAG00000009937)	Mas1 (ENSJJAG00000011567)	Igf2r (ENSJJAG00000019554)	Slc22a1 (ENSJJAG00000017119) #7	Slc22a2 (ENSJJAG00000020676) #9	Slc22a3 (ENSJJAG00000015842) #12	Plg (ENSJJAG00000023805) #13	ENSJJAG00000016960 #14	ENSJJAG00000017984 #14	Agpat4 (ENSJJAG00000024380) #15	Prkn (ENSJJAG00000011282) #17	ENSJJAG00000022340	Pacrg (ENSJJAG00000013819) #20	Qki (ENSJJAG00000022765) #22	Pabpc6 (ENSJJAG00000019230)	ENSJJAG00000017023	ENSJJAG00000010987	ENSJJAG00000005686 #26	Pde10a (ENSJJAG00000010428) #27	ENSJJAG00000022568 #28	ENSJJAG00000023581 #33	ENSJJAG00000020707 #34	Rps6ka2 (ENSJJAG00000005765) #35	ENSJJAG00000013485 #36	Cep43 (ENSJJAG00000024342) #37	ENSJJAG00000020398	Afdn (ENSJJAG00000011148)	ENSJJAG00000011658	ENSJJAG00000015043
Muroidea	ANCESTRAL SPECIES	22	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Upper Galilee mountains blind mole rat	MODERN SPECIES	552													ENSNGAG00000000152	ENSNGAG00000016095	Pacrg (ENSNGAG00000015468) #20	Qki (ENSNGAG00000009989) #22	Pabpc6 (ENSNGAG00000000987)
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00690000103860 #31	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988.r #34	ENSGT01030000234667.b	ENSGT00390000007441 #37	ENSGT00640000091563.a #36	ENSGT00400000024673	ENSGT00940000159956 #35	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a
Cricetidae	ANCESTRAL SPECIES	11	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00690000103860 #31	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988.r #34	ENSGT01030000234667.b	ENSGT00390000007441 #37	ENSGT00640000091563.a #36	ENSGT00400000024673	ENSGT00940000159956 #35	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00690000103860 #31	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988.r #34	ENSGT01030000234667.b	ENSGT00640000091563.a #36	ENSGT00940000159956 #35	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Northern American deer mouse	MODERN SPECIES	7	Mrpl18 (ENSPEMG00000016836)	Pnldc1 (ENSPEMG00000016301)	Mas1 (ENSPEMG00000014302)	Igf2r (ENSPEMG00000016189)	Slc22a1 (ENSPEMG00000013645) #7	Slc22a2 (ENSPEMG00000009409) #9	Slc22a3 (ENSPEMG00000001370) #12	Plg (ENSPEMG00000006099) #13	Map3k4 (ENSPEMG00000011456) #14	ENSPEMG00000007201	Agpat4 (ENSPEMG00000000276) #15	Prkn (ENSPEMG00000013734) #17	ENSPEMG00000028613	ENSPEMG00000025332	Pacrg (ENSPEMG00000008420) #20	Qki (ENSPEMG00000007765) #22	Pabpc6 (ENSPEMG00000028235)	1700010I14Rik (ENSPEMG00000009028) #26	Pde10a (ENSPEMG00000013375) #27	T (ENSPEMG00000015655) #28	ENSPEMG00000027563 #31	Prr18 (ENSPEMG00000014412) #32	ENSPEMG00000017376 #33	ENSPEMG00000018400 #34	ENSPEMG00000011035 #36	Rps6ka2 (ENSPEMG00000008858) #35	Gpr31b (ENSPEMG00000029005)	ENSPEMG00000006421	Ttll2 (ENSPEMG00000012262)	ENSPEMG00000017052	Afdn (ENSPEMG00000009605)
Prairie vole	MODERN SPECIES	358	ENSMOCG00000000514	Tcp1 (ENSMOCG00000020265)	Mrpl18 (ENSMOCG00000016680)	Pnldc1 (ENSMOCG00000014287)	Mas1 (ENSMOCG00000012154)	Igf2r (ENSMOCG00000016653)	Slc22a1 (ENSMOCG00000006138) #7	Slc22a2 (ENSMOCG00000000432) #9	Slc22a3 (ENSMOCG00000009699) #12	Plg (ENSMOCG00000021058) #13	ENSMOCG00000016399	Map3k4 (ENSMOCG00000015705) #14	Agpat4 (ENSMOCG00000002544) #15	Prkn (ENSMOCG00000000910) #17	Pacrg (ENSMOCG00000018703) #20	Qki (ENSMOCG00000008370) #22	1700010I14Rik (ENSMOCG00000011216) #26	Pde10a (ENSMOCG00000016596) #27	T (ENSMOCG00000016940) #28	Prr18 (ENSMOCG00000014100) #32	ENSMOCG00000012383 #33	ENSMOCG00000003155 #34	Ccr6 (ENSMOCG00000022621)	ENSMOCG00000014231	ENSMOCG00000016647 #36	Rps6ka2 (ENSMOCG00000011166) #35	ENSMOCG00000019493	ENSMOCG00000016335	ENSMOCG00000011368	Afdn (ENSMOCG00000017063)	Dact2 (ENSMOCG00000011813)
Cricetinae	ANCESTRAL SPECIES	7	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988.r #34	ENSGT01030000234667.b	ENSGT00390000007441 #37	ENSGT00640000091563.a #36	ENSGT00400000024673	ENSGT00940000159956 #35	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752
Chinese hamster chok1gshd	MODERN SPECIES	1	TCP1 (ENSCGRG00001007629)	Mrpl18 (ENSCGRG00001010667)	ENSCGRG00001007470	Mas1 (ENSCGRG00001007652)	Igf2r (ENSCGRG00001022921)	Slc22a1 (ENSCGRG00001023484) #7	Slc22a2 (ENSCGRG00001023859) #9	Slc22a3 (ENSCGRG00001024404) #12	ENSCGRG00001022809	Plg (ENSCGRG00001023181) #13	Map3k4 (ENSCGRG00001023770) #14	Agpat4 (ENSCGRG00001024340) #15	Prkn (ENSCGRG00001011980) #17	ENSCGRG00001009195	Pacrg (ENSCGRG00001010865) #20	Qki (ENSCGRG00001012114) #22	Pabpc6 (ENSCGRG00001007983)	1700010I14Rik (ENSCGRG00001014965) #26	Pde10a (ENSCGRG00001016395) #27	ENSCGRG00001024700 #28	ENSCGRG00001024817 #33	ENSCGRG00001024881 #34	ENSCGRG00001024749 #36	Rps6ka2 (ENSCGRG00001024721) #35	ENSCGRG00001024787	Gpr31b (ENSCGRG00001006182)	ENSCGRG00001000721	Ttll2 (ENSCGRG00001024844)	ENSCGRG00001024904	ENSCGRG00001007918	Afdn (ENSCGRG00001013153)
Golden Hamster	MODERN SPECIES	888																Qki (ENSMAUG00000001920) #22	Pabpc6 (ENSMAUG00000003031)
Murinae	ANCESTRAL SPECIES	29	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00690000103860 #31	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988.q.b #34	ENSGT01030000234667.b	ENSGT00390000007441 #37	ENSGT00640000091563.a #36	ENSGT00400000024673	ENSGT00940000159956 #35	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a
Rat	MODERN SPECIES		ENSRNOG00000069754	Tcp1 (ENSRNOG00000014160)	Mrpl18 (ENSRNOG00000014582)	Pnldc1 (ENSRNOG00000023140)	Mas1 (ENSRNOG00000014971)	Igf2r (ENSRNOG00000014997)	Slc22a1 (ENSRNOG00000016337) #7	Slc22a2 (ENSRNOG00000016625) #9	Slc22a3 (ENSRNOG00000022946) #12	Plg (ENSRNOG00000017223) #13	AABR07001512.1 (ENSRNOG00000017412)	Map3k4 (ENSRNOG00000017419) #14	Agpat4 (ENSRNOG00000017731) #15	Prkn (ENSRNOG00000055547) #17	Pacrg (ENSRNOG00000068261) #20	Qki (ENSRNOG00000048297) #22	Pabpc6 (ENSRNOG00000017367)	MGC94891 (ENSRNOG00000011243) #26	Pde10a (ENSRNOG00000011310) #27	Tbxt (ENSRNOG00000012229) #28	T2 (ENSRNOG00000024172) #31	ENSRNOG00000066810	Prr18 (ENSRNOG00000070586) #32	Sft2d1 (ENSRNOG00000024140) #33	Mpc1 (ENSRNOG00000012415) #34	Ccr6 (ENSRNOG00000012964)	Cep43 (ENSRNOG00000055093) #37	Rnaset2 (ENSRNOG00000013190) #36	Rps6ka2 (ENSRNOG00000013194) #35	Tcp10b (ENSRNOG00000013374)	Ttll2 (ENSRNOG00000033901)
Mus	ANCESTRAL SPECIES	21	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00690000103860 #31	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988.q.b #34	ENSGT01030000234667.b	ENSGT00390000007441 #37	ENSGT00640000091563.a #36	ENSGT00400000024673	ENSGT00940000159956 #35	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a
Shrew mouse	MODERN SPECIES	13	MGP_PahariEiJ_G0023358	Tcp1 (MGP_PahariEiJ_G0023359)	Mrpl18 (MGP_PahariEiJ_G0023360)	Pnldc1 (MGP_PahariEiJ_G0023361)	Mrgprh (MGP_PahariEiJ_G0023362)	Mas1 (MGP_PahariEiJ_G0023363)	Igf2r (MGP_PahariEiJ_G0023364)	Slc22a1 (MGP_PahariEiJ_G0023365) #7	Slc22a2 (MGP_PahariEiJ_G0023366) #9	Slc22a3 (MGP_PahariEiJ_G0023367) #12	Plg (MGP_PahariEiJ_G0023368) #13	Map3k4 (MGP_PahariEiJ_G0023369) #14	Agpat4 (MGP_PahariEiJ_G0023370) #15	Prkn (MGP_PahariEiJ_G0023371) #17	Pacrg (MGP_PahariEiJ_G0023372) #20	Qki (MGP_PahariEiJ_G0023373) #22	MGP_PahariEiJ_G0023374	MGP_PahariEiJ_G0023375 #26	Pde10a (MGP_PahariEiJ_G0023376) #27	MGP_PahariEiJ_G0023377	T (MGP_PahariEiJ_G0023378) #28	MGP_PahariEiJ_G0023379 #33	Prr18 (MGP_PahariEiJ_G0023380) #32	MGP_PahariEiJ_G0023381 #33	MGP_PahariEiJ_G0023382 #34	Ccr6 (MGP_PahariEiJ_G0023383)	Cep43 (MGP_PahariEiJ_G0023384) #37	MGP_PahariEiJ_G0023385 #36	MGP_PahariEiJ_G0023386 #36	MGP_PahariEiJ_G0023387	MGP_PahariEiJ_G0023388
Mus_A	ANCESTRAL SPECIES	10	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00690000103860 #31	ENSGT00390000002164 #32	ENSGT00390000018525.a.a.j #33	ENSGT00510000046988.q.b #34	ENSGT01030000234667.b	ENSGT00390000007441 #37	ENSGT00640000091563.a #36	ENSGT00400000024673	ENSGT00940000159956 #35	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021042	Tcp1 (MGP_CAROLIEiJ_G0021043)	Mrpl18 (MGP_CAROLIEiJ_G0021044)	Pnldc1 (MGP_CAROLIEiJ_G0021045)	Mrgprh (MGP_CAROLIEiJ_G0021046)	Mas1 (MGP_CAROLIEiJ_G0021047)	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #7	Slc22a2 (MGP_CAROLIEiJ_G0021050) #9	Slc22a3 (MGP_CAROLIEiJ_G0021051) #12	Plg (MGP_CAROLIEiJ_G0021052) #13	Map3k4 (MGP_CAROLIEiJ_G0021053) #14	Agpat4 (MGP_CAROLIEiJ_G0021054) #15	Prkn (MGP_CAROLIEiJ_G0021055) #17	Pacrg (MGP_CAROLIEiJ_G0021056) #20	Qki (MGP_CAROLIEiJ_G0021057) #22	Pabpc6 (MGP_CAROLIEiJ_G0021058)	1700010I14Rik (MGP_CAROLIEiJ_G0021059) #26	Pde10a (MGP_CAROLIEiJ_G0021060) #27	T (MGP_CAROLIEiJ_G0021061) #28	Sft2d1 (MGP_CAROLIEiJ_G0021062) #33	Prr18 (MGP_CAROLIEiJ_G0021063) #32	MGP_CAROLIEiJ_G0021064 #33	MGP_CAROLIEiJ_G0021065 #34	Ccr6 (MGP_CAROLIEiJ_G0021066)	Cep43 (MGP_CAROLIEiJ_G0021067) #37	MGP_CAROLIEiJ_G0021068 #36	MGP_CAROLIEiJ_G0021069 #36	Rps6ka2 (MGP_CAROLIEiJ_G0021070) #35	Gpr31b (MGP_CAROLIEiJ_G0021071)	MGP_CAROLIEiJ_G0021072
Mus_B	ANCESTRAL SPECIES	9	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065.c.a #7	ENSGT00940000162065.d #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b	ENSGT00700000105447.b.a	ENSGT00940000154721.db.a	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00690000103860 #31	ENSGT00390000002164 #32	ENSGT00390000018525.a.a.j #33	ENSGT00510000046988.q.b.b.a #34	ENSGT01030000234667.b	ENSGT00390000007441 #37	ENSGT00640000091563.a #36	ENSGT00400000024673	ENSGT00940000159956 #35
Mouse	MODERN SPECIES	8	Acat3 (ENSMUSG00000062480)	Tcp1 (ENSMUSG00000068039)	Mrpl18 (ENSMUSG00000057388)	Pnldc1 (ENSMUSG00000073460)	Mrgprh (ENSMUSG00000059408)	Mas1 (ENSMUSG00000068037)	Igf2r (ENSMUSG00000023830)	Slc22a1 (ENSMUSG00000023829) #7	Slc22a2 (ENSMUSG00000040966) #9	Slc22a3 (ENSMUSG00000023828) #12	Plg (ENSMUSG00000059481) #13	Map3k4 (ENSMUSG00000014426) #14	Agpat4 (ENSMUSG00000023827) #15	Prkn (ENSMUSG00000023826) #17	Pacrg (ENSMUSG00000037196) #20	Qki (ENSMUSG00000062078) #22	Pabpc6 (ENSMUSG00000046173)	Gm17728 (ENSMUSG00000072968)	1700010I14Rik (ENSMUSG00000023873) #26	Pde10a (ENSMUSG00000023868) #27	T (ENSMUSG00000062327) #28	T2 (ENSMUSG00000058159) #31	Prr18 (ENSMUSG00000055945) #32	Sft2d1 (ENSMUSG00000073468) #33	Mpc1 (ENSMUSG00000023861) #34	Ccr6 (ENSMUSG00000040899)	Cep43 (ENSMUSG00000069135) #37	Rnaset2a (ENSMUSG00000095687) #36	Rsph3a (ENSMUSG00000073471)	Tagap (ENSMUSG00000033450)	Fndc1 (ENSMUSG00000071984)
Mus_C	ANCESTRAL SPECIES	35	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065.c.a #7	ENSGT00940000162065.d #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b	ENSGT00700000105447.b.a	ENSGT00940000154721.db.a	ENSGT00390000009877 #26	ENSGT00940000156543 #27
spretus	MODERN SPECIES	8	Acat3 (MGP_SPRETEiJ_G0021978)	Tcp1 (MGP_SPRETEiJ_G0021977)	Mrpl18 (MGP_SPRETEiJ_G0021976)	Pnldc1 (MGP_SPRETEiJ_G0021975)	Mrgprh (MGP_SPRETEiJ_G0021974)	Mas1 (MGP_SPRETEiJ_G0021973)	Igf2r (MGP_SPRETEiJ_G0021972)	Slc22a1 (MGP_SPRETEiJ_G0021971) #7	Slc22a2 (MGP_SPRETEiJ_G0021970) #9	Slc22a3 (MGP_SPRETEiJ_G0021969) #12	Plg (MGP_SPRETEiJ_G0021968) #13	Map3k4 (MGP_SPRETEiJ_G0021967) #14	Agpat4 (MGP_SPRETEiJ_G0021966) #15	Prkn (MGP_SPRETEiJ_G0021965) #17	Pacrg (MGP_SPRETEiJ_G0021964) #20	Qki (MGP_SPRETEiJ_G0021963) #22	Pabpc6 (MGP_SPRETEiJ_G0021962)	Gm17728 (MGP_SPRETEiJ_G0021961)	MGP_SPRETEiJ_G0021960	MGP_SPRETEiJ_G0021959	T (MGP_SPRETEiJ_G0021958) #28	Prr18 (MGP_SPRETEiJ_G0021957) #32	MGP_SPRETEiJ_G0021956 #33	Sft2d1 (MGP_SPRETEiJ_G0021955) #33	MGP_SPRETEiJ_G0021954 #34	Ccr6 (MGP_SPRETEiJ_G0021953)	Cep43 (MGP_SPRETEiJ_G0021952) #37	MGP_SPRETEiJ_G0021951 #36	MGP_SPRETEiJ_G0021950 #36	MGP_SPRETEiJ_G0021949	MGP_SPRETEiJ_G0021948
Steppe mouse	MODERN SPECIES	3148														ENSMSIG00000014271 #17	Pacrg (ENSMSIG00000014249) #20	Qki (ENSMSIG00000014232) #22	Pabpc6 (ENSMSIG00000014218)	Gm17728 (ENSMSIG00000014212)	Ppihl (ENSMSIG00000014204)	1700010I14Rik (ENSMSIG00000014152) #26	Pde10a (ENSMSIG00000013595) #27
Lagomorpha	ANCESTRAL SPECIES	64	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33
Rabbit	MODERN SPECIES	3	MRPL18 (ENSOCUG00000013858)	PNLDC1 (ENSOCUG00000013867)	MGRA (ENSOCUG00000001493)	IGF2R (ENSOCUG00000008785)	SLC22A1 (ENSOCUG00000002539) #7	SLC22A2 (ENSOCUG00000002542) #9	SLC22A3 (ENSOCUG00000004222) #12	ENSOCUG00000001766 #13	MAP3K4 (ENSOCUG00000017154) #14	ENSOCUG00000032142	ENSOCUG00000033664 #15	ENSOCUG00000035966 #17	ENSOCUG00000025750 #17	ENSOCUG00000031144	PACRG (ENSOCUG00000013289) #20	QKI (ENSOCUG00000004117) #22	ENSOCUG00000030844 #11	ENSOCUG00000034613	ENSOCUG00000016006	PDE10A (ENSOCUG00000009218) #27	TBXT (ENSOCUG00000000660) #28
Pika	MODERN SPECIES	291															PACRG (ENSOPRG00000011653) #20	QKI (ENSOPRG00000011662) #22
Tree shrew	MODERN SPECIES	464																ENSTBEG00000016809 #22
Primates	ANCESTRAL SPECIES	5	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00950000183181.A.a
Mouse lemur	MODERN SPECIES	28	WTAP (ENSMICG00000033919)	ENSMICG00000042830	ACAT2 (ENSMICG00000007988)	ENSMICG00000007998	MRPL18 (ENSMICG00000044845)	PNLDC1 (ENSMICG00000008021)	IGF2R (ENSMICG00000007582)	SLC22A1 (ENSMICG00000007625) #7	SLC22A2 (ENSMICG00000007636) #9	SLC22A3 (ENSMICG00000007647) #12	ENSMICG00000034395 #13	MAP3K4 (ENSMICG00000007663) #14	AGPAT4 (ENSMICG00000009184) #15	PRKN (ENSMICG00000009200) #17	PACRG (ENSMICG00000009209) #20	QKI (ENSMICG00000009220) #22	C6orf118 (ENSMICG00000046277) #26	PDE10A (ENSMICG00000008121) #27	TBXT (ENSMICG00000016122) #28	PRR18 (ENSMICG00000042137) #32	SFT2D1 (ENSMICG00000034411) #33	MPC1 (ENSMICG00000003851) #34	RPS6KA2 (ENSMICG00000003856) #35	RNASET2 (ENSMICG00000014184) #36	CEP43 (ENSMICG00000014198) #37	CCR6 (ENSMICG00000028385)	TTLL2 (ENSMICG00000047984)	UNC93A (ENSMICG00000004803)	AFDN (ENSMICG00000003571)	KIF25 (ENSMICG00000044733)	DACT2 (ENSMICG00000033819)
Lemuriformes_a	ANCESTRAL SPECIES	28	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22
Coquerels sifaka	MODERN SPECIES	358	SOD2 (ENSPCOG00000014692)	WTAP (ENSPCOG00000014167)	ACAT2 (ENSPCOG00000011643)	ENSPCOG00000017935	MRPL18 (ENSPCOG00000025100)	PNLDC1 (ENSPCOG00000025722)	IGF2R (ENSPCOG00000018469)	SLC22A1 (ENSPCOG00000021330) #7	SLC22A2 (ENSPCOG00000023545) #9	SLC22A3 (ENSPCOG00000017815) #12	ENSPCOG00000026308 #13	MAP3K4 (ENSPCOG00000015288) #14	AGPAT4 (ENSPCOG00000013535) #15	PRKN (ENSPCOG00000019988) #17	PACRG (ENSPCOG00000013888) #20	QKI (ENSPCOG00000007664) #22	ENSPCOG00000022276
Greater bamboo lemur	MODERN SPECIES	451														ENSPSMG00000005490 #17	PACRG (ENSPSMG00000005502) #20	QKI (ENSPSMG00000005558) #22
Bushbaby	MODERN SPECIES	171	MRPL18 (ENSOGAG00000007327)	PNLDC1 (ENSOGAG00000007331)	ENSOGAG00000031607	ENSOGAG00000031154	MAS1 (ENSOGAG00000005268)	IGF2R (ENSOGAG00000005270)	SLC22A1 (ENSOGAG00000005276) #7	ENSOGAG00000005280	SLC22A2 (ENSOGAG00000005281) #9	SLC22A3 (ENSOGAG00000004550) #12	ENSOGAG00000030352 #13	MAP3K4 (ENSOGAG00000004556) #14	AGPAT4 (ENSOGAG00000004567) #15	PRKN (ENSOGAG00000010979) #17	PACRG (ENSOGAG00000004947) #20	QKI (ENSOGAG00000003634) #22	C6orf118 (ENSOGAG00000007625) #26	PDE10A (ENSOGAG00000007629) #27	TBXT (ENSOGAG00000007863) #28	PRR18 (ENSOGAG00000030765) #32	SFT2D1 (ENSOGAG00000006302) #33	RPS6KA2 (ENSOGAG00000006306) #35	ENSOGAG00000033842	RNASET2 (ENSOGAG00000006308) #36	CEP43 (ENSOGAG00000006310) #37	CCR6 (ENSOGAG00000025164)	ENSOGAG00000033331	TTLL2 (ENSOGAG00000033615)	UNC93A (ENSOGAG00000027493)	AFDN (ENSOGAG00000003132)	KIF25 (ENSOGAG00000001753)
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Tarsier	MODERN SPECIES	6896															ENSTSYG00000028458	QKI (ENSTSYG00000036757) #22
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00910000146857	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a.n.b	ENSGT00530000063927.a.a.n.a
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543.e #27	ENSGT00910000146857	ENSGT00940000156543.f.b #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a.n.b	ENSGT00530000063359.A	ENSGT00940000162752
Mas night monkey	MODERN SPECIES	265	ACAT2 (ENSANAG00000030553)	TCP1 (ENSANAG00000033987)	MRPL18 (ENSANAG00000033398)	PNLDC1 (ENSANAG00000034713)	MAS1 (ENSANAG00000019902)	IGF2R (ENSANAG00000031865)	SLC22A1 (ENSANAG00000038334) #7	SLC22A2 (ENSANAG00000030328) #9	SLC22A3 (ENSANAG00000030361) #12	PLG (ENSANAG00000030380) #13	MAP3K4 (ENSANAG00000030551) #14	AGPAT4 (ENSANAG00000037521) #15	PRKN (ENSANAG00000032287) #17	ENSANAG00000019305	PACRG (ENSANAG00000020727) #20	QKI (ENSANAG00000029669) #22	C6orf118 (ENSANAG00000023807) #26	ENSANAG00000019760 #27	ENSANAG00000037901
Cebidae	ANCESTRAL SPECIES	5	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543.e #27	ENSGT00910000146857	ENSGT00940000156543.f.b #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a.n.b	ENSGT00940000162752	ENSGT00530000063359.A
Marmoset	MODERN SPECIES	16	WTAP (ENSCJAG00000011722)	ACAT2 (ENSCJAG00000011777)	TCP1 (ENSCJAG00000011792)	MRPL18 (ENSCJAG00000011859)	PNLDC1 (ENSCJAG00000011865)	ENSCJAG00000081097	IGF2R (ENSCJAG00000011908)	SLC22A2 (ENSCJAG00000012056) #9	SLC22A3 (ENSCJAG00000012093) #12	PLG (ENSCJAG00000012132) #13	ENSCJAG00000084439	MAP3K4 (ENSCJAG00000012176) #14	AGPAT4 (ENSCJAG00000012323) #15	PRKN (ENSCJAG00000012355) #17	PACRG (ENSCJAG00000012365) #20	QKI (ENSCJAG00000012368) #22	ENSCJAG00000077202	ENSCJAG00000075058	PDE10A (ENSCJAG00000012410) #27	TBXT (ENSCJAG00000012508) #28	PRR18 (ENSCJAG00000012527) #32	SFT2D1 (ENSCJAG00000012533) #33	ENSCJAG00000012552 #34	RPS6KA2 (ENSCJAG00000000462) #35	ENSCJAG00000077718	ENSCJAG00000000469 #36	ENSCJAG00000053408	ENSCJAG00000073948	CEP43 (ENSCJAG00000000473) #37	ENSCJAG00000076555	ENSCJAG00000077314
Cebidae_a	ANCESTRAL SPECIES	26	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543.e #27	ENSGT00910000146857	ENSGT00940000156543.f.b #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b
Capuchin	MODERN SPECIES	6	WTAP (ENSCCAG00000021303)	ACAT2 (ENSCCAG00000034076)	TCP1 (ENSCCAG00000028316)	MRPL18 (ENSCCAG00000027672)	PNLDC1 (ENSCCAG00000026232)	MAS1 (ENSCCAG00000012059)	IGF2R (ENSCCAG00000010739)	SLC22A1 (ENSCCAG00000030320) #7	SLC22A2 (ENSCCAG00000020700) #9	SLC22A3 (ENSCCAG00000035674) #12	PLG (ENSCCAG00000034420) #13	MAP3K4 (ENSCCAG00000028977) #14	AGPAT4 (ENSCCAG00000022357) #15	PRKN (ENSCCAG00000024514) #17	PACRG (ENSCCAG00000034067) #20	QKI (ENSCCAG00000025230) #22
Bolivian squirrel monkey	MODERN SPECIES	101	ENSSBOG00000017833	ACAT2 (ENSSBOG00000035773)	TCP1 (ENSSBOG00000022736)	MRPL18 (ENSSBOG00000017384)	PNLDC1 (ENSSBOG00000019135)	MAS1 (ENSSBOG00000019912)	IGF2R (ENSSBOG00000024078)	SLC22A1 (ENSSBOG00000029054) #7	SLC22A2 (ENSSBOG00000035664) #9	SLC22A3 (ENSSBOG00000024841) #12	PLG (ENSSBOG00000033802) #13	MAP3K4 (ENSSBOG00000022969) #14	AGPAT4 (ENSSBOG00000023179) #15	PRKN (ENSSBOG00000019735) #17	PACRG (ENSSBOG00000036098) #20	QKI (ENSSBOG00000036267) #22	C6orf118 (ENSSBOG00000024744) #26	ENSSBOG00000030466 #27	ENSSBOG00000030891	TBXT (ENSSBOG00000023313) #28	SFT2D1 (ENSSBOG00000020053) #33	MPC1 (ENSSBOG00000030115) #34	RPS6KA2 (ENSSBOG00000023209) #35	RNASET2 (ENSSBOG00000022586) #36	CEP43 (ENSSBOG00000021544) #37	CCR6 (ENSSBOG00000026892)
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00550000074878.`b.a.a	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000157183.a.a	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00910000146857	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00530000063359.A
Cercopithecidae	ANCESTRAL SPECIES	34	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000157183.a.a	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00910000146857	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00530000063359.A
Rhinopithecus	ANCESTRAL SPECIES	403											ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00910000146857	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35
Black snub-nosed monkey	MODERN SPECIES	295											PLG (ENSRBIG00000042750) #13	MAP3K4 (ENSRBIG00000036975) #14	AGPAT4 (ENSRBIG00000031711) #15	PRKN (ENSRBIG00000027594) #17	PACRG (ENSRBIG00000005726) #20	QKI (ENSRBIG00000043656) #22	C6orf118 (ENSRBIG00000004596) #26	ENSRBIG00000036166	PDE10A (ENSRBIG00000023020) #27	TBXT (ENSRBIG00000037010) #28	SFT2D1 (ENSRBIG00000036071) #33	MPC1 (ENSRBIG00000036142) #34	RPS6KA2 (ENSRBIG00000018635) #35
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	1712											PLG (ENSRROG00000042779) #13	MAP3K4 (ENSRROG00000042666) #14	AGPAT4 (ENSRROG00000038839) #15	PRKN (ENSRROG00000029447) #17	PACRG (ENSRROG00000039063) #20	QKI (ENSRROG00000040592) #22	C6orf118 (ENSRROG00000040200) #26	PDE10A (ENSRROG00000034670) #27
Golden snub-nosed monkey	MODERN SPECIES	1301																ENSRROG00000037865 #22
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #13	ENSGT00940000157183.a.a.b	ENSGT00880000138034 #14	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00400000024673	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00530000063359.A	ENSGT00940000162752
Vervet Monkey	MODERN SPECIES	4	TCP1 (ENSCSAG00000012567)	MRPL18 (ENSCSAG00000012516)	PNLDC1 (ENSCSAG00000012478)	ENSCSAG00000012433	MAS1 (ENSCSAG00000012417)	IGF2R (ENSCSAG00000012403)	SLC22A1 (ENSCSAG00000012377) #7	SLC22A2 (ENSCSAG00000012370) #9	SLC22A3 (ENSCSAG00000012348) #12	LPA (ENSCSAG00000012297)	PLG (ENSCSAG00000012290) #13	MAP3K4 (ENSCSAG00000012282) #14	AGPAT4 (ENSCSAG00000012273) #15	ENSCSAG00000018983	PRKN (ENSCSAG00000012267) #17	QKI (ENSCSAG00000012257) #22	ENSCSAG00000012244	C6orf118 (ENSCSAG00000012234) #26	PDE10A (ENSCSAG00000012225) #27	ENSCSAG00000012208	TBXT (ENSCSAG00000012200) #28	PRR18 (ENSCSAG00000012184) #32	SFT2D1 (ENSCSAG00000012180) #33	RPS6KA2 (ENSCSAG00000012167) #35	ENSCSAG00000012150	RNASET2 (ENSCSAG00000012144) #36	CEP43 (ENSCSAG00000012128) #37	CCR6 (ENSCSAG00000012111)	GPR31 (ENSCSAG00000018984)	ENSCSAG00000012101	UNC93A (ENSCSAG00000012079)
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153095.g.b.a.a.a.b.b.b	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a.n.a
Macaca	ANCESTRAL SPECIES	9	ENSGT00550000074878.`b.a.a.a	ENSGT00390000006394.i.a	ENSGT00940000153167.A.a	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000153095.g.b.a.a.a.b.b.b	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a.n.a
Macaca_a	ANCESTRAL SPECIES	26												ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a.n.a	ENSGT00940000155237
Rhesus	MODERN SPECIES	14	ENSMMUG00000052876	PNLDC1 (ENSMMUG00000004181)	MAS1 (ENSMMUG00000016217)	IGF2R (ENSMMUG00000015658)	SLC22A1 (ENSMMUG00000015662) #7	SLC22A2 (ENSMMUG00000005715) #9	SLC22A3 (ENSMMUG00000005717) #12	ENSMMUG00000016201	PLG (ENSMMUG00000016945) #13	ENSMMUG00000057619	MAP3K4 (ENSMMUG00000006143) #14	AGPAT4 (ENSMMUG00000006147) #15	PRKN (ENSMMUG00000020410) #17	PACRG (ENSMMUG00000020412) #20	ENSMMUG00000054834	QKI (ENSMMUG00000000428) #22	ENSMMUG00000055955	C4H6orf118 (ENSMMUG00000023613) #26	PDE10A (ENSMMUG00000023614) #27	TBXT (ENSMMUG00000017047) #28	PRR18 (ENSMMUG00000011700) #32	SFT2D1 (ENSMMUG00000011736) #33	MPC1 (ENSMMUG00000011739) #34	RPS6KA2 (ENSMMUG00000005670) #35	RNASET2 (ENSMMUG00000005673) #36	CEP43 (ENSMMUG00000005674) #37	CCR6 (ENSMMUG00000005676)	GPR31 (ENSMMUG00000060558)	UNC93A (ENSMMUG00000008228)	TTLL2 (ENSMMUG00000005680)	ENSMMUG00000029352
Crab-eating macaque	MODERN SPECIES	14	MAS1 (ENSMFAG00000004332)	IGF2R (ENSMFAG00000034342)	SLC22A1 (ENSMFAG00000033700) #7	SLC22A2 (ENSMFAG00000031849) #9	SLC22A3 (ENSMFAG00000002893) #12	ENSMFAG00000064690	ENSMFAG00000063217	ENSMFAG00000051812 #13	PLG (ENSMFAG00000050264) #13	ENSMFAG00000061670	MAP3K4 (ENSMFAG00000036572) #14	AGPAT4 (ENSMFAG00000041781) #15	PRKN (ENSMFAG00000002107) #17	PACRG (ENSMFAG00000039741) #20	ENSMFAG00000057576	QKI (ENSMFAG00000044069) #22	C6orf118 (ENSMFAG00000031329) #26	PDE10A (ENSMFAG00000046132) #27	TBXT (ENSMFAG00000030026) #28	ENSMFAG00000049559	ENSMFAG00000059048 #32	SFT2D1 (ENSMFAG00000039956) #33	MPC1 (ENSMFAG00000003954) #34	RPS6KA2 (ENSMFAG00000032453) #35	ENSMFAG00000051223	RNASET2 (ENSMFAG00000039774) #36	ENSMFAG00000049160	CEP43 (ENSMFAG00000040151) #37	CCR6 (ENSMFAG00000062524)	UNC93A (ENSMFAG00000035470)	TTLL2 (ENSMFAG00000041604)
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	220	TPST2 (ENSMNEG00000040345)	TFIP11 (ENSMNEG00000039522)	SRRD (ENSMNEG00000035293)	HPS4 (ENSMNEG00000042993)	ASPHD2 (ENSMNEG00000021494)	SEZ6L (ENSMNEG00000028464)	MYO18B (ENSMNEG00000042147)	GRK3 (ENSMNEG00000029806)	ENSMNEG00000042198	PIWIL3 (ENSMNEG00000040579)	SGSM1 (ENSMNEG00000033806)	LHFPL7 (ENSMNEG00000029647)	KIAA1671 (ENSMNEG00000041829)	CRYBB3 (ENSMNEG00000031926)	CRYBB2 (ENSMNEG00000029640)	ENSMNEG00000015913 #22	ENSMNEG00000037737	ENSMNEG00000031341
Pig-tailed macaque	MODERN SPECIES	139											PLG (ENSMNEG00000042095) #13	MAP3K4 (ENSMNEG00000032311) #14	AGPAT4 (ENSMNEG00000037275) #15	PRKN (ENSMNEG00000027725) #17	PACRG (ENSMNEG00000042289) #20	ENSMNEG00000043724 #22	ENSMNEG00000026836	C6orf118 (ENSMNEG00000036512) #26	PDE10A (ENSMNEG00000027445) #27	ENSMNEG00000038868	ENSMNEG00000022920	ENSMNEG00000037990	TBXT (ENSMNEG00000040011) #28	SFT2D1 (ENSMNEG00000034299) #33	MPC1 (ENSMNEG00000030001) #34	RPS6KA2 (ENSMNEG00000028453) #35	RNASET2 (ENSMNEG00000033732) #36	CEP43 (ENSMNEG00000044780) #37	CCR6 (ENSMNEG00000033597)	UNC93A (ENSMNEG00000033918)	TTLL2 (ENSMNEG00000043374)
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT01030000234639.A.a	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034.`c #17	ENSGT00940000157330 #20	ENSGT01090000260381	ENSGT00940000155310.b #22	ENSGT00940000153095.g.b.a.a.a.b.b.b	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a.n.a
Olive baboon	MODERN SPECIES	16	SLC22A2 (ENSPANG00000008238) #9	SLC22A3 (ENSPANG00000025907) #12	ENSPANG00000033663	ENSPANG00000048497	ENSPANG00000042063	ENSPANG00000038033	PLG (ENSPANG00000007072) #13	MAP3K4 (ENSPANG00000013261) #14	ENSPANG00000050992	AGPAT4 (ENSPANG00000043829) #15	PRKN (ENSPANG00000022007) #17	ENSPANG00000048628	PACRG (ENSPANG00000030883) #20	ENSPANG00000040612	ENSPANG00000043294	QKI (ENSPANG00000006711) #22	ENSPANG00000047222	C6orf118 (ENSPANG00000010211) #26	PDE10A (ENSPANG00000019045) #27	TBXT (ENSPANG00000005068) #28	PRR18 (ENSPANG00000035337) #32	SFT2D1 (ENSPANG00000000460) #33	MPC1 (ENSPANG00000030766) #34	RPS6KA2 (ENSPANG00000018198) #35	ENSPANG00000041620	RNASET2 (ENSPANG00000022370) #36	CEP43 (ENSPANG00000008430) #37	CCR6 (ENSPANG00000038558)	GPR31 (ENSPANG00000045312)	UNC93A (ENSPANG00000022873)	ENSPANG00000008429
Cercopithecinae_d	ANCESTRAL SPECIES	70	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034.`c #17	ENSGT00940000157330 #20	ENSGT01090000260381	ENSGT00940000155310.b #22	ENSGT00940000153307.c.a.h.k.a.a	ENSGT00520000056310.A.d
Drill	DUPLICATION
Drill	MODERN SPECIES	510	TFIP11 (ENSMLEG00000039426)	SRRD (ENSMLEG00000023876)	HPS4 (ENSMLEG00000041598)	ASPHD2 (ENSMLEG00000041774)	SEZ6L (ENSMLEG00000041520)	MYO18B (ENSMLEG00000043528)	ENSMLEG00000033023	GRK3 (ENSMLEG00000035729)	ENSMLEG00000009063	PIWIL3 (ENSMLEG00000038128)	SGSM1 (ENSMLEG00000042242)	LHFPL7 (ENSMLEG00000044167)	KIAA1671 (ENSMLEG00000040930)	CRYBB3 (ENSMLEG00000040105)	ENSMLEG00000033212	ENSMLEG00000035836 #22	ENSMLEG00000027386	DRICH1 (ENSMLEG00000042682)
Drill	MODERN SPECIES	1309													PRKN (ENSMLEG00000042695) #17	PACRG (ENSMLEG00000040096) #20	ENSMLEG00000025987	ENSMLEG00000033347 #22	ENSMLEG00000044157	C6orf118 (ENSMLEG00000041650) #26	PDE10A (ENSMLEG00000036596) #27	ENSMLEG00000035256	ENSMLEG00000004880	ENSMLEG00000032182	ENSMLEG00000039755	ENSMLEG00000035760	TBXT (ENSMLEG00000028132) #28	SFT2D1 (ENSMLEG00000036233) #33	MPC1 (ENSMLEG00000040167) #34	ENSMLEG00000024978	RPS6KA2 (ENSMLEG00000018321) #35	RNASET2 (ENSMLEG00000020984) #36	CEP43 (ENSMLEG00000030168) #37
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	474	TFIP11 (ENSCATG00000040954)	SRRD (ENSCATG00000032586)	HPS4 (ENSCATG00000044526)	ASPHD2 (ENSCATG00000027082)	SEZ6L (ENSCATG00000034410)	MYO18B (ENSCATG00000043606)	ENSCATG00000030608	GRK3 (ENSCATG00000036335)	PIWIL3 (ENSCATG00000044030)	ENSCATG00000041646	SGSM1 (ENSCATG00000002153)	LHFPL7 (ENSCATG00000044808)	KIAA1671 (ENSCATG00000043893)	CRYBB3 (ENSCATG00000041743)	CRYBB2 (ENSCATG00000040020)	ENSCATG00000030029 #22	ENSCATG00000014595	DRICH1 (ENSCATG00000037304)	ENSCATG00000035022	ENSCATG00000013082
Sooty mangabey	MODERN SPECIES	220									PLG (ENSCATG00000039756) #13	ENSCATG00000034269	MAP3K4 (ENSCATG00000038027) #14	AGPAT4 (ENSCATG00000012223) #15	PRKN (ENSCATG00000033190) #17	PACRG (ENSCATG00000036404) #20	ENSCATG00000038866	ENSCATG00000037623 #22	ENSCATG00000016910	C6orf118 (ENSCATG00000034818) #26	ENSCATG00000040268	PDE10A (ENSCATG00000039033) #27	ENSCATG00000035247	ENSCATG00000038207	TBXT (ENSCATG00000038841) #28	SFT2D1 (ENSCATG00000034006) #33
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208.p #13	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #13	ENSGT00880000138034 #14	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00910000146857	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00940000154957.B.s.b	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00530000063359.A
Gibbon	MODERN SPECIES	18	WTAP (ENSNLEG00000028233)	ACAT2 (ENSNLEG00000011115)	TCP1 (ENSNLEG00000011178)	MRPL18 (ENSNLEG00000011269)	PNLDC1 (ENSNLEG00000011282)	IGF2R (ENSNLEG00000011313)	ENSNLEG00000035869	ENSNLEG00000035654 #7	SLC22A2 (ENSNLEG00000011367) #9	ENSNLEG00000011373 #12	ENSNLEG00000011380 #13	MAP3K4 (ENSNLEG00000011428) #14	ENSNLEG00000011464 #15	PRKN (ENSNLEG00000011473) #17	PACRG (ENSNLEG00000011474) #20	ENSNLEG00000011478 #22	C6orf118 (ENSNLEG00000011493) #26	ENSNLEG00000011508 #27	ENSNLEG00000033543	TBXT (ENSNLEG00000011552) #28	SFT2D1 (ENSNLEG00000031636) #33	ENSNLEG00000032002 #34	RPS6KA2 (ENSNLEG00000011560) #35	ENSNLEG00000034042	RNASET2 (ENSNLEG00000027795) #36	CEP43 (ENSNLEG00000011605) #37	CCR6 (ENSNLEG00000032795)	ENSNLEG00000011641	UNC93A (ENSNLEG00000011647)	TTLL2 (ENSNLEG00000031278)	ENSNLEG00000033899
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208.p #13	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #13	ENSGT00880000138034 #14	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00910000146857	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00940000154957.B.s.b	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00530000063359.A
Orangutan	MODERN SPECIES	19	PNLDC1 (ENSPPYG00000017148)	MAS1 (ENSPPYG00000017261)	IGF2R (ENSPPYG00000017149)	SLC22A1 (ENSPPYG00000017150) #7	SLC22A2 (ENSPPYG00000017151) #9	SLC22A3 (ENSPPYG00000017152) #12	ENSPPYG00000029841 #13	ENSPPYG00000039278	PLG (ENSPPYG00000017153) #13	MAP3K4 (ENSPPYG00000017155) #14	ENSPPYG00000038768	AGPAT4 (ENSPPYG00000017156) #15	PRKN (ENSPPYG00000017158) #17	PACRG (ENSPPYG00000017159) #20	ENSPPYG00000035748	QKI (ENSPPYG00000017160) #22	C6orf118 (ENSPPYG00000017161) #26	PDE10A (ENSPPYG00000017162) #27	TBXT (ENSPPYG00000017163) #28	ENSPPYG00000032308	PRR18 (ENSPPYG00000017164) #32	ENSPPYG00000017165 #33	ENSPPYG00000017166 #34	RPS6KA2 (ENSPPYG00000017167) #35	RNASET2 (ENSPPYG00000037542) #36	CEP43 (ENSPPYG00000032640) #37	CCR6 (ENSPPYG00000017168)	GPR31 (ENSPPYG00000017169)	UNC93A (ENSPPYG00000017170)	TTLL2 (ENSPPYG00000017171)	ENSPPYG00000017172
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208.p #13	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #13	ENSGT00880000138034 #14	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00910000146857	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00940000154957.B.s.b	ENSGT00640000091563.a.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00530000063359.A
Gorilla	MODERN SPECIES	19	TCP1 (ENSGGOG00000014063)	MRPL18 (ENSGGOG00000014075)	PNLDC1 (ENSGGOG00000014077)	MAS1 (ENSGGOG00000010485)	IGF2R (ENSGGOG00000001658)	ENSGGOG00000022414	SLC22A1 (ENSGGOG00000001671) #7	SLC22A2 (ENSGGOG00000013636) #9	SLC22A3 (ENSGGOG00000001951) #12	LPA (ENSGGOG00000016065)	PLG (ENSGGOG00000010300) #13	MAP3K4 (ENSGGOG00000008360) #14	ENSGGOG00000023810	PRKN (ENSGGOG00000041961) #17	PACRG (ENSGGOG00000014095) #20	QKI (ENSGGOG00000000733) #22	C6orf118 (ENSGGOG00000014415) #26	ENSGGOG00000003914 #27	TBXT (ENSGGOG00000007693) #28	ENSGGOG00000028089 #32	SFT2D1 (ENSGGOG00000024304) #33	ENSGGOG00000038590 #34	RPS6KA2 (ENSGGOG00000004934) #35	ENSGGOG00000041475	RNASET2 (ENSGGOG00000000498) #36	CEP43 (ENSGGOG00000024970) #37	CCR6 (ENSGGOG00000040098)	GPR31 (ENSGGOG00000007378)	ENSGGOG00000040061	ENSGGOG00000011740	TTLL2 (ENSGGOG00000014857)
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208.p #13	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #13	ENSGT00880000138034 #14	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00910000146857	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00940000154957.B.s.b	ENSGT00640000091563.a.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00530000063359.A
Human	MODERN SPECIES	18	ACAT2 (ENSG00000120437)	TCP1 (ENSG00000120438)	MRPL18 (ENSG00000112110)	PNLDC1 (ENSG00000146453)	MAS1 (ENSG00000130368)	IGF2R (ENSG00000197081)	SLC22A1 (ENSG00000175003) #7	SLC22A2 (ENSG00000112499) #9	SLC22A3 (ENSG00000146477) #12	LPA (ENSG00000198670)	PLG (ENSG00000122194) #13	MAP3K4 (ENSG00000085511) #14	AGPAT4 (ENSG00000026652) #15	PRKN (ENSG00000185345) #17	PACRG (ENSG00000112530) #20	QKI (ENSG00000112531) #22	C6orf118 (ENSG00000112539) #26	PDE10A (ENSG00000112541) #27	TBXT (ENSG00000164458) #28	PRR18 (ENSG00000176381) #32	SFT2D1 (ENSG00000198818) #33	MPC1 (ENSG00000060762) #34	RPS6KA2 (ENSG00000071242) #35	RAMACL (ENSG00000235272)	ENSG00000249141	RNASET2 (ENSG00000026297) #36	CEP43 (ENSG00000213066) #37	ENSG00000272980	CCR6 (ENSG00000112486)	GPR31 (ENSG00000120436)	UNC93A (ENSG00000112494)
Pan	ANCESTRAL SPECIES	5	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208.p #13	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #13	ENSGT00880000138034 #14	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00910000146857	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00940000154957.B.s.b	ENSGT00640000091563.a.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00530000063359.A
Chimpanzee	MODERN SPECIES	19	MRPL18 (ENSPTRG00000018761)	PNLDC1 (ENSPTRG00000018762)	MAS1 (ENSPTRG00000018763)	IGF2R (ENSPTRG00000018764)	ENSPTRG00000051861	SLC22A1 (ENSPTRG00000018767) #7	SLC22A2 (ENSPTRG00000018768) #9	SLC22A3 (ENSPTRG00000018769) #12	LPA (ENSPTRG00000018770)	PLG (ENSPTRG00000018774) #13	MAP3K4 (ENSPTRG00000046415) #14	ENSPTRG00000048118	AGPAT4 (ENSPTRG00000018779) #15	PRKN (ENSPTRG00000018781) #17	PACRG (ENSPTRG00000048824) #20	QKI (ENSPTRG00000018785) #22	C6H6orf118 (ENSPTRG00000018786) #26	PDE10A (ENSPTRG00000018787) #27	TBXT (ENSPTRG00000018789) #28	PRR18 (ENSPTRG00000018790) #32	SFT2D1 (ENSPTRG00000023700) #33	MPC1 (ENSPTRG00000024084) #34	RPS6KA2 (ENSPTRG00000018793) #35	ENSPTRG00000047422	RNASET2 (ENSPTRG00000018796) #36	CEP43 (ENSPTRG00000033965) #37	GPR31 (ENSPTRG00000018800)	ENSPTRG00000018802	UNC93A (ENSPTRG00000018803)	TTLL2 (ENSPTRG00000018805)	ENSPTRG00000047252
Bonobo	MODERN SPECIES	19	PNLDC1 (ENSPPAG00000026651)	MAS1 (ENSPPAG00000003542)	IGF2R (ENSPPAG00000022058)	ENSPPAG00000029247	SLC22A1 (ENSPPAG00000017979) #7	SLC22A2 (ENSPPAG00000012601) #9	SLC22A3 (ENSPPAG00000009760) #12	ENSPPAG00000026664 #13	ENSPPAG00000034032	PLG (ENSPPAG00000042434) #13	MAP3K4 (ENSPPAG00000037745) #14	ENSPPAG00000006234	AGPAT4 (ENSPPAG00000041903) #15	PRKN (ENSPPAG00000034661) #17	PACRG (ENSPPAG00000000755) #20	ENSPPAG00000038059 #22	C6orf118 (ENSPPAG00000032502) #26	ENSPPAG00000034143 #27	ENSPPAG00000025444	TBXT (ENSPPAG00000030203) #28	SFT2D1 (ENSPPAG00000001173) #33	ENSPPAG00000034758 #34	RPS6KA2 (ENSPPAG00000038721) #35	ENSPPAG00000038016	RNASET2 (ENSPPAG00000031557) #36	CEP43 (ENSPPAG00000039127) #37	CCR6 (ENSPPAG00000035908)	GPR31 (ENSPPAG00000013225)	ENSPPAG00000028331	ENSPPAG00000031294	UNC93A (ENSPPAG00000034812)
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Suina	ANCESTRAL SPECIES	18	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787	ENSGT00950000183181.A.a
Pig	MODERN SPECIES		TCP1 (ENSSSCG00000004048)	MRPL18 (ENSSSCG00000004047)	PNLDC1 (ENSSSCG00000004046)	MAS1 (ENSSSCG00000059431)	IGF2R (ENSSSCG00000004044)	SLC22A1 (ENSSSCG00000004041) #7	SLC22A2 (ENSSSCG00000004040) #9	SLC22A3 (ENSSSCG00000004039) #12	PLG (ENSSSCG00000004038) #13	MAP3K4 (ENSSSCG00000004037) #14	AGPAT4 (ENSSSCG00000004033) #15	ENSSSCG00000053549	PRKN (ENSSSCG00000004032) #17	ENSSSCG00000047165	PACRG (ENSSSCG00000038153) #20	QKI (ENSSSCG00000004029) #22	ENSSSCG00000051306 #11	PDE10A (ENSSSCG00000004027) #27	TBXT (ENSSSCG00000036609) #28	SFT2D1 (ENSSSCG00000004020) #33	ENSSSCG00000032916 #34	RPS6KA2 (ENSSSCG00000004022) #35	ENSSSCG00000004024 #36	CEP43 (ENSSSCG00000004023) #37	ENSSSCG00000034196	CCR6 (ENSSSCG00000024562)	GPR31 (ENSSSCG00000062590)	ENSSSCG00000032403	UNC93A (ENSSSCG00000027404)	AFDN (ENSSSCG00000004018)	ENSSSCG00000004016
Chacoan peccary	MODERN SPECIES	66															ENSCWAG00000019203 #20	QKI (ENSCWAG00000019227) #22	PDE10A (ENSCWAG00000019393) #27	TBXT (ENSCWAG00000020086) #28	SFT2D1 (ENSCWAG00000020135) #33	MPC1 (ENSCWAG00000020147) #34	RPS6KA2 (ENSCWAG00000020169) #35	RNASET2 (ENSCWAG00000020254) #36	CEP43 (ENSCWAG00000020301) #37	CCR6 (ENSCWAG00000020319)	GPR31 (ENSCWAG00000020324)	UNC93A (ENSCWAG00000020371)
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Pecora	ANCESTRAL SPECIES	19	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a.c #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Yarkand deer	MODERN SPECIES	18	WTAP (ENSCHYG00000022403)	ACAT2 (ENSCHYG00000022487)	TCP1 (ENSCHYG00000022554)	MRPL18 (ENSCHYG00000022773)	PNLDC1 (ENSCHYG00000022800)	MAS1 (ENSCHYG00000022925)	IGF2R (ENSCHYG00000023202)	SLC22A1 (ENSCHYG00000025285) #7	SLC22A2 (ENSCHYG00000025351) #9	SLC22A3 (ENSCHYG00000025420) #12	ENSCHYG00000025465 #13	MAP3K4 (ENSCHYG00000025579) #14	AGPAT4 (ENSCHYG00000025772) #15	PRKN (ENSCHYG00000025824) #17	PACRG (ENSCHYG00000025979) #20	QKI (ENSCHYG00000026014) #22	C6orf118 (ENSCHYG00000026045) #26	PDE10A (ENSCHYG00000026108) #27	ENSCHYG00000026255	TBXT (ENSCHYG00000026275) #28	SFT2D1 (ENSCHYG00000026311) #33	MPC1 (ENSCHYG00000026331) #34	RPS6KA2 (ENSCHYG00000026381) #35	RNASET2 (ENSCHYG00000026522) #36	ENSCHYG00000026541 #37	CCR6 (ENSCHYG00000026557)	GPR31 (ENSCHYG00000026561)	ENSCHYG00000026568	TTLL2 (ENSCHYG00000026577)	UNC93A (ENSCHYG00000026589)	AFDN (ENSCHYG00000026646)
Percora_a	ANCESTRAL SPECIES	21	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a.c #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Siberian musk deer	MODERN SPECIES	61	TCP1 (ENSMMSG00000002241)	MRPL18 (ENSMMSG00000002291)	PNLDC1 (ENSMMSG00000002313)	MAS1 (ENSMMSG00000002388)	IGF2R (ENSMMSG00000002420)	SLC22A1 (ENSMMSG00000002522) #7	SLC22A2 (ENSMMSG00000002601) #9	SLC22A3 (ENSMMSG00000002642) #12	ENSMMSG00000002676 #13	ENSMMSG00000002739	MAP3K4 (ENSMMSG00000002913) #14	AGPAT4 (ENSMMSG00000003318) #15	PRKN (ENSMMSG00000003365) #17	ENSMMSG00000003500	PACRG (ENSMMSG00000003517) #20	QKI (ENSMMSG00000003545) #22	C6orf118 (ENSMMSG00000003599) #26	PDE10A (ENSMMSG00000003706) #27	TBXT (ENSMMSG00000004018) #28	ENSMMSG00000004063 #33	MPC1 (ENSMMSG00000004070) #34	RPS6KA2 (ENSMMSG00000004107) #35	RNASET2 (ENSMMSG00000004161) #36	CEP43 (ENSMMSG00000004190) #37	CCR6 (ENSMMSG00000004222)	GPR31 (ENSMMSG00000004230)	TTLL2 (ENSMMSG00000004233)	UNC93A (ENSMMSG00000004249)	AFDN (ENSMMSG00000004278)	KIF25 (ENSMMSG00000004380)	ENSMMSG00000004399
Bovidae	ANCESTRAL SPECIES	21	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a.c.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Caprinae	ANCESTRAL SPECIES		ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a.c.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Goat	MODERN SPECIES	28	MAS1 (ENSCHIG00000012964)	IGF2R (ENSCHIG00000010830)	SLC22A1 (ENSCHIG00000014819) #7	SLC22A2 (ENSCHIG00000006824) #9	SLC22A3 (ENSCHIG00000021136) #12	ENSCHIG00000011198 #13	MAP3K4 (ENSCHIG00000009330) #14	ENSCHIG00000024395	AGPAT4 (ENSCHIG00000016729) #15	ENSCHIG00000020982 #17	ENSCHIG00000025260 #17	ENSCHIG00000016416 #17	ENSCHIG00000010884 #20	ENSCHIG00000022840 #20	ENSCHIG00000015636 #20	QKI (ENSCHIG00000018891) #22	ENSCHIG00000012121	C6orf118 (ENSCHIG00000013027) #26	PDE10A (ENSCHIG00000022822) #27	ENSCHIG00000021845	ENSCHIG00000005334	ENSCHIG00000021177	TBXT (ENSCHIG00000011143) #28	ENSCHIG00000010788 #33	MPC1 (ENSCHIG00000016041) #34	RPS6KA2 (ENSCHIG00000016479) #35	RNASET2 (ENSCHIG00000021432) #36	CEP43 (ENSCHIG00000023724) #37	CCR6 (ENSCHIG00000025437)	ENSCHIG00000025672	ENSCHIG00000010837
Rambouillet Sheep	MODERN SPECIES	24	ENSOARG00020006176	TCP1 (ENSOARG00020006218)	MRPL18 (ENSOARG00020006305)	PNLDC1 (ENSOARG00020006365)	MAS1 (ENSOARG00020006641)	IGF2R (ENSOARG00020007810)	SLC22A1 (ENSOARG00020025899) #7	SLC22A2 (ENSOARG00020025906) #9	SLC22A3 (ENSOARG00020025917) #12	ENSOARG00020025929 #13	MAP3K4 (ENSOARG00020025996) #14	AGPAT4 (ENSOARG00020026075) #15	PRKN (ENSOARG00020026093) #17	PACRG (ENSOARG00020026098) #20	ENSOARG00020026099	QKI (ENSOARG00020026100) #22	C6orf118 (ENSOARG00020026106) #26	PDE10A (ENSOARG00020026110) #27	ENSOARG00020026114	T (ENSOARG00020026117) #28	ENSOARG00020026119 #33	MPC1 (ENSOARG00020026121) #34	RPS6KA2 (ENSOARG00020026129) #35	RNASET2 (ENSOARG00020026133) #36	CEP43 (ENSOARG00020026135) #37	CCR6 (ENSOARG00020026137)	GPR31 (ENSOARG00020026138)	TTLL2 (ENSOARG00020026140)	UNC93A (ENSOARG00020026141)	AFDN (ENSOARG00020026148)	KIF25 (ENSOARG00020026158)
Bovinae	ANCESTRAL SPECIES	35	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a.c.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
American bison	MODERN SPECIES	2999													ENSBBBG00000015762 #15	PRKN (ENSBBBG00000015746) #17	PACRG (ENSBBBG00000015645) #20	QKI (ENSBBBG00000015623) #22	ENSBBBG00000015582	C6orf118 (ENSBBBG00000015578) #26
Bos	ANCESTRAL SPECIES	19	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a.c.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT00960000189610	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Bos_b	ANCESTRAL SPECIES	42	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a.c.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT00960000189610	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Cow	MODERN SPECIES	28	ACAT2 (ENSBTAG00000002827)	TCP1 (ENSBTAG00000002829)	MRPL18 (ENSBTAG00000001289)	PNLDC1 (ENSBTAG00000015166)	MAS1 (ENSBTAG00000031724)	IGF2R (ENSBTAG00000002402)	SLC22A1 (ENSBTAG00000008540) #7	SLC22A2 (ENSBTAG00000009583) #9	SLC22A3 (ENSBTAG00000039080) #12	PLG (ENSBTAG00000001271) #13	MAP3K4 (ENSBTAG00000020079) #14	ENSBTAG00000052236	AGPAT4 (ENSBTAG00000007668) #15	PRKN (ENSBTAG00000018996) #17	PACRG (ENSBTAG00000011106) #20	QKI (ENSBTAG00000011593) #22	C9H6orf118 (ENSBTAG00000015485) #26	PDE10A (ENSBTAG00000007758) #27	TBXT (ENSBTAG00000018681) #28	SFT2D1 (ENSBTAG00000002993) #33	MPC1 (ENSBTAG00000027879) #34	RPS6KA2 (ENSBTAG00000021741) #35	RNASET2 (ENSBTAG00000014494) #36	CEP43 (ENSBTAG00000014495) #37	ENSBTAG00000054087	CCR6 (ENSBTAG00000014496)	GPR31 (ENSBTAG00000014497)	TTLL2 (ENSBTAG00000031481)	UNC93A (ENSBTAG00000014498)	AFDN (ENSBTAG00000005557)	KIF25 (ENSBTAG00000007694)
Bos_a	ANCESTRAL SPECIES	54	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000155310.a.a.b ##22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a.c.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT00960000189610	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Wild yak	MODERN SPECIES	685														ENSBMUG00000022892 #17	PACRG (ENSBMUG00000022897) #20	QKI (ENSBMUG00000022934) #22
Cetacea	ANCESTRAL SPECIES	18	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Sperm whale	MODERN SPECIES	1	SOD2 (ENSPCTG00005003274)	WTAP (ENSPCTG00005003235)	MAS1 (ENSPCTG00005003224)	IGF2R (ENSPCTG00005003188)	SLC22A1 (ENSPCTG00005003152) #7	SLC22A2 (ENSPCTG00005003126) #9	ENSPCTG00005003105	SLC22A3 (ENSPCTG00005003082) #12	ENSPCTG00005003046 #13	ENSPCTG00005002991	MAP3K4 (ENSPCTG00005002630) #14	ENSPCTG00005002531	ENSPCTG00005002514	ENSPCTG00005002486 #17	PACRG (ENSPCTG00005002460) #20	QKI (ENSPCTG00005002421) #22	PDE10A (ENSPCTG00005002171) #27	TBXT (ENSPCTG00005002094) #28	SFT2D1 (ENSPCTG00005002060) #33	MPC1 (ENSPCTG00005002036) #34	RPS6KA2 (ENSPCTG00005001904) #35	RNASET2 (ENSPCTG00005001817) #36	FGFR1OP (ENSPCTG00005001773) #37	CCR6 (ENSPCTG00005001752)	GPR31 (ENSPCTG00005001742)	AFDN (ENSPCTG00005001219)	DACT2 (ENSPCTG00005000897)	SMOC2 (ENSPCTG00005000882)	THBS2 (ENSPCTG00005000803)	DLL1 (ENSPCTG00005000763)	FAM120B (ENSPCTG00005000692)
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Dolphin	MODERN SPECIES	914											SLC22A3 (ENSTTRG00000012027) #12	MAP3K4 (ENSTTRG00000012031) #14	AGPAT4 (ENSTTRG00000012034) #15	PRKN (ENSTTRG00000012037) #17	PACRG (ENSTTRG00000012041) #20	QKI (ENSTTRG00000012050) #22
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00390000018085.a.b.b	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00940000154508.a.a.h	ENSGT00940000153877.h.c.b.b	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00390000018085.a.b.b	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00940000154508.a.a.h	ENSGT00940000153877.h.c.b.b	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Narwhal	MODERN SPECIES	301	ACAT2 (ENSMMNG00015011293)	TCP1 (ENSMMNG00015011321)	MRPL18 (ENSMMNG00015011349)	PNLDC1 (ENSMMNG00015011367)	MAS1 (ENSMMNG00015011391)	IGF2R (ENSMMNG00015011406)	SLC22A1 (ENSMMNG00015011429) #7	ENSMMNG00015011446	SLC22A2 (ENSMMNG00015011459) #9	SLC22A3 (ENSMMNG00015011477) #12	ENSMMNG00015011493 #13	MAP3K4 (ENSMMNG00015011572) #14	AGPAT4 (ENSMMNG00015011728) #15	ENSMMNG00015011816	PACRG (ENSMMNG00015011827) #20	QKI (ENSMMNG00015011839) #22	C6orf118 (ENSMMNG00015011860) #26	PDE10A (ENSMMNG00015011925) #27	TBXT (ENSMMNG00015012069) #28	SFT2D1 (ENSMMNG00015012112) #33	MPC1 (ENSMMNG00015012133) #34	RPS6KA2 (ENSMMNG00015012184) #35	RNASET2 (ENSMMNG00015012292) #36	CEP43 (ENSMMNG00015012318) #37	CCR6 (ENSMMNG00015012341)	GPR31 (ENSMMNG00015012351)	UNC93A (ENSMMNG00015012361)	AFDN (ENSMMNG00015012415)	ENSMMNG00015012486	FRMD1 (ENSMMNG00015005432)	DACT2 (ENSMMNG00015005450)
Beluga whale	MODERN SPECIES	80	MRPL18 (ENSDLEG00000013282)	PNLDC1 (ENSDLEG00000013298)	MAS1 (ENSDLEG00000013351)	IGF2R (ENSDLEG00000013373)	SLC22A1 (ENSDLEG00000013591) #7	SLC22A2 (ENSDLEG00000013647) #9	SLC22A3 (ENSDLEG00000013670) #12	PLG (ENSDLEG00000013736) #13	MAP3K4 (ENSDLEG00000013778) #14	AGPAT4 (ENSDLEG00000013962) #15	ENSDLEG00000014031	ENSDLEG00000014046	ENSDLEG00000014063	ENSDLEG00000014077 #20	ENSDLEG00000014088 #20	QKI (ENSDLEG00000014103) #22	C6orf118 (ENSDLEG00000014153) #26	PDE10A (ENSDLEG00000014196) #27	TBXT (ENSDLEG00000014293) #28	ENSDLEG00000014310 #32	SFT2D1 (ENSDLEG00000008117) #33	MPC1 (ENSDLEG00000008231) #34	RPS6KA2 (ENSDLEG00000008370) #35	RNASET2 (ENSDLEG00000008582) #36	FGFR1OP (ENSDLEG00000008619) #37	CCR6 (ENSDLEG00000008660)	GPR31 (ENSDLEG00000008676)	UNC93A (ENSDLEG00000008686)	AFDN (ENSDLEG00000008803)	FRMD1 (ENSDLEG00000009084)	DACT2 (ENSDLEG00000009128)
Vaquita	MODERN SPECIES	3	MRPL18 (ENSPSNG00000018155)	PNLDC1 (ENSPSNG00000017839)	MAS1 (ENSPSNG00000017797)	IGF2R (ENSPSNG00000017592)	ENSPSNG00000017517 #7	ENSPSNG00000017468	SLC22A2 (ENSPSNG00000017306) #9	SLC22A3 (ENSPSNG00000017154) #12	ENSPSNG00000016905 #13	MAP3K4 (ENSPSNG00000016678) #14	AGPAT4 (ENSPSNG00000016495) #15	ENSPSNG00000016413	ENSPSNG00000016356	PRKN (ENSPSNG00000015749) #17	PACRG (ENSPSNG00000015572) #20	QKI (ENSPSNG00000015355) #22	PDE10A (ENSPSNG00000013372) #27	TBXT (ENSPSNG00000012892) #28	SFT2D1 (ENSPSNG00000012816) #33	MPC1 (ENSPSNG00000012700) #34	RPS6KA2 (ENSPSNG00000012290) #35	RNASET2 (ENSPSNG00000012163) #36	CEP43 (ENSPSNG00000012059) #37	CCR6 (ENSPSNG00000012011)	GPR31 (ENSPSNG00000011991)	UNC93A (ENSPSNG00000011811)	AFDN (ENSPSNG00000010491)	FRMD1 (ENSPSNG00000010162)	DACT2 (ENSPSNG00000010088)	SMOC2 (ENSPSNG00000009968)	THBS2 (ENSPSNG00000009838)
Blue whale	MODERN SPECIES	3	MRPL18 (ENSBMSG00010011042)	PNLDC1 (ENSBMSG00010010984)	MAS1 (ENSBMSG00010010947)	IGF2R (ENSBMSG00010010889)	ENSBMSG00010010858	SLC22A1 (ENSBMSG00010010839) #7	SLC22A2 (ENSBMSG00010010814) #9	SLC22A3 (ENSBMSG00010010779) #12	ENSBMSG00010010741 #13	MAP3K4 (ENSBMSG00010010709) #14	AGPAT4 (ENSBMSG00010010688) #15	ENSBMSG00010010664	PRKN (ENSBMSG00010010461) #17	ENSBMSG00010010418	ENSBMSG00010010411 #20	QKI (ENSBMSG00010010393) #22	C6orf118 (ENSBMSG00010010372) #26	PDE10A (ENSBMSG00010010298) #27	TBXT (ENSBMSG00010010219) #28	SFT2D1 (ENSBMSG00010010197) #33	MPC1 (ENSBMSG00010010171) #34	RPS6KA2 (ENSBMSG00010009920) #35	ENSBMSG00010009839 #36	CEP43 (ENSBMSG00010009801) #37	CCR6 (ENSBMSG00010009781)	GPR31 (ENSBMSG00010009771)	UNC93A (ENSBMSG00010009745)	AFDN (ENSBMSG00010009709)	FRMD1 (ENSBMSG00010009676)	DACT2 (ENSBMSG00010009647)	SMOC2 (ENSBMSG00010009620)
Camelidae	ANCESTRAL SPECIES	37	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Arabian camel	MODERN SPECIES	34	WTAP (ENSCDRG00005015081)	ACAT2 (ENSCDRG00005015012)	TCP1 (ENSCDRG00005014875)	MRPL18 (ENSCDRG00005014810)	PNLDC1 (ENSCDRG00005014558)	MAS1 (ENSCDRG00005014532)	IGF2R (ENSCDRG00005014304)	SLC22A1 (ENSCDRG00005014227) #7	SLC22A2 (ENSCDRG00005014141) #9	SLC22A3 (ENSCDRG00005014054) #12	ENSCDRG00005013803 #13	MAP3K4 (ENSCDRG00005011806) #14	AGPAT4 (ENSCDRG00005011648) #15	PRKN (ENSCDRG00005010399) #17	PACRG (ENSCDRG00005010327) #20	QKI (ENSCDRG00005010246) #22	C6orf118 (ENSCDRG00005010197) #26	PDE10A (ENSCDRG00005009275) #27	TBXT (ENSCDRG00005009061) #28	ENSCDRG00005009017 #32	SFT2D1 (ENSCDRG00005008896) #33	ENSCDRG00005008762 #34	RPS6KA2 (ENSCDRG00005008268) #35	RNASET2 (ENSCDRG00005008141) #36	CEP43 (ENSCDRG00005008019) #37	CCR6 (ENSCDRG00005007993)	GPR31 (ENSCDRG00005007976)	UNC93A (ENSCDRG00005007860)	AFDN (ENSCDRG00005006936)	ENSCDRG00005006727	ENSCDRG00005006634
Alpaca	MODERN SPECIES	4630																QKI (ENSVPAG00000009566) #22
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988.i.a #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Equus	ANCESTRAL SPECIES	46	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00690000103860 #31	ENSGT00390000018525.a.a #33	ENSGT00510000046988.i.a #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Horse	MODERN SPECIES	24	TCP1 (ENSECAG00000017953)	MRPL18 (ENSECAG00000012515)	PNLDC1 (ENSECAG00000012898)	MAS1 (ENSECAG00000028126)	IGF2R (ENSECAG00000019509)	ENSECAG00000044529	SLC22A1 (ENSECAG00000016404) #7	SLC22A2 (ENSECAG00000021017) #9	SLC22A3 (ENSECAG00000004372) #12	ENSECAG00000007979 #13	ENSECAG00000031093	MAP3K4 (ENSECAG00000012724) #14	AGPAT4 (ENSECAG00000001189) #15	PRKN (ENSECAG00000004645) #17	PACRG (ENSECAG00000014308) #20	QKI (ENSECAG00000017504) #22	C31H6orf118 (ENSECAG00000000126) #26	PDE10A (ENSECAG00000008004) #27	TBXT (ENSECAG00000007994) #28	ENSECAG00000028989 #31	SFT2D1 (ENSECAG00000019479) #33	MPC1 (ENSECAG00000020275) #34	RPS6KA2 (ENSECAG00000020508) #35	RNASET2 (ENSECAG00000038762) #36	CEP43 (ENSECAG00000019040) #37	CCR6 (ENSECAG00000005185)	GPR31 (ENSECAG00000005409)	ENSECAG00000003447	UNC93A (ENSECAG00000008764)	AFDN (ENSECAG00000014680)	KIF25 (ENSECAG00000008965)
Donkey	MODERN SPECIES	20	ACAT2 (ENSEASG00005019019)	TCP1 (ENSEASG00005019021)	ENSEASG00005028667	PNLDC1 (ENSEASG00005019029)	MAS1 (ENSEASG00005019033)	IGF2R (ENSEASG00005019232)	SLC22A1 (ENSEASG00005019667) #7	SLC22A2 (ENSEASG00005019670) #9	SLC22A3 (ENSEASG00005019679) #12	ENSEASG00005019697 #13	MAP3K4 (ENSEASG00005019701) #14	ENSEASG00005019709	ENSEASG00005019711 #15	PRKN (ENSEASG00005019721) #17	PACRG (ENSEASG00005019723) #20	QKI (ENSEASG00005019724) #22	C6orf118 (ENSEASG00005019727) #26	PDE10A (ENSEASG00005019729) #27	TBXT (ENSEASG00005000114) #28	ENSEASG00005000239 #31	ENSEASG00005011917	SFT2D1 (ENSEASG00005028687) #33	ENSEASG00005029716 #34	RPS6KA2 (ENSEASG00005000339) #35	RNASET2 (ENSEASG00005000345) #36	CEP43 (ENSEASG00005000363) #37	CCR6 (ENSEASG00005028790)	ENSEASG00005027533	ENSEASG00005026055	ENSEASG00005000398	AFDN (ENSEASG00005000410)
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988.j #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Megabat	MODERN SPECIES	4057																QKI (ENSPVAG00000015228) #22
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988.j #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Microbat	MODERN SPECIES	1285																QKI (ENSMLUG00000002829) #22	ENSMLUG00000003358 #26	PDE10A (ENSMLUG00000006020) #27	TBXT (ENSMLUG00000011294) #28	ENSMLUG00000010982 #33
Greater horseshoe bat	MODERN SPECIES	21	ACAT2 (ENSRFEG00010006101)	ENSRFEG00010006182	MRPL18 (ENSRFEG00010006349)	PNLDC1 (ENSRFEG00010006385)	MAS1 (ENSRFEG00010006507)	IGF2R (ENSRFEG00010006536)	SLC22A1 (ENSRFEG00010006710) #7	SLC22A2 (ENSRFEG00010006879) #9	ENSRFEG00010007005	SLC22A3 (ENSRFEG00010007045) #12	ENSRFEG00010007176 #13	MAP3K4 (ENSRFEG00010007347) #14	AGPAT4 (ENSRFEG00010008317) #15	PRKN (ENSRFEG00010008431) #17	PACRG (ENSRFEG00010008690) #20	QKI (ENSRFEG00010008753) #22
Carnivora	ANCESTRAL SPECIES	4	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Felidae	ANCESTRAL SPECIES	5	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Panthera	ANCESTRAL SPECIES	7	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787	ENSGT00950000183181.A.a
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787	ENSGT00950000183181.A.a
lion	MODERN SPECIES	5	TCP1 (ENSPLOG00000003746)	MRPL18 (ENSPLOG00000003790)	PNLDC1 (ENSPLOG00000003816)	MAS1 (ENSPLOG00000003857)	IGF2R (ENSPLOG00000003880)	SLC22A1 (ENSPLOG00000004002) #7	SLC22A2 (ENSPLOG00000004027) #9	SLC22A3 (ENSPLOG00000004048) #12	ENSPLOG00000004061 #13	ENSPLOG00000004079 #13	ENSPLOG00000004087 #13	MAP3K4 (ENSPLOG00000004139) #14	AGPAT4 (ENSPLOG00000004245) #15	PRKN (ENSPLOG00000004285) #17	PACRG (ENSPLOG00000004324) #20	QKI (ENSPLOG00000004330) #22	C6orf118 (ENSPLOG00000004379) #26	PDE10A (ENSPLOG00000004454) #27	TBXT (ENSPLOG00000004499) #28	SFT2D1 (ENSPLOG00000004514) #33	MPC1 (ENSPLOG00000004524) #34	RPS6KA2 (ENSPLOG00000004555) #35	ENSPLOG00000004632 #36	CEP43 (ENSPLOG00000004651) #37	CCR6 (ENSPLOG00000004660)	GPR31 (ENSPLOG00000004665)	UNC93A (ENSPLOG00000004674)	AFDN (ENSPLOG00000004692)	KIF25 (ENSPLOG00000004705)	DACT2 (ENSPLOG00000004757)	SMOC2 (ENSPLOG00000004781)
leopard	MODERN SPECIES	59	WTAP (ENSPPRG00000016764)	ACAT2 (ENSPPRG00000014607)	TCP1 (ENSPPRG00000014032)	MRPL18 (ENSPPRG00000013063)	PNLDC1 (ENSPPRG00000012854)	MAS1 (ENSPPRG00000016120)	IGF2R (ENSPPRG00000010975)	SLC22A1 (ENSPPRG00000009083) #7	SLC22A2 (ENSPPRG00000008200) #9	SLC22A3 (ENSPPRG00000007817) #12	ENSPPRG00000007637 #13	MAP3K4 (ENSPPRG00000007372) #14	AGPAT4 (ENSPPRG00000003125) #15	PRKN (ENSPPRG00000002801) #17	PACRG (ENSPPRG00000018305) #20	QKI (ENSPPRG00000013383) #22	C6orf118 (ENSPPRG00000012423) #26	PDE10A (ENSPPRG00000012201) #27	TBXT (ENSPPRG00000008721) #28	SFT2D1 (ENSPPRG00000008072) #33	MPC1 (ENSPPRG00000007955) #34	RPS6KA2 (ENSPPRG00000007163) #35	RNASET2 (ENSPPRG00000005136) #36	ENSPPRG00000004367	CEP43 (ENSPPRG00000004055) #37	CCR6 (ENSPPRG00000002424)	GPR31 (ENSPPRG00000014821)	UNC93A (ENSPPRG00000001893)	AFDN (ENSPPRG00000000999)	KIF25 (ENSPPRG00000015361)	ENSPPRG00000011962
Tiger	MODERN SPECIES	551	MRPL18 (ENSPTIG00000010107)	PNLDC1 (ENSPTIG00000011501)	MAS1 (ENSPTIG00000001177)	ENSPTIG00000014351	IGF2R (ENSPTIG00000015202)	SLC22A1 (ENSPTIG00000019426) #7	SLC22A2 (ENSPTIG00000006985) #9	SLC22A3 (ENSPTIG00000008644) #12	ENSPTIG00000010411 #13	MAP3K4 (ENSPTIG00000017590) #14	AGPAT4 (ENSPTIG00000021603) #15	PRKN (ENSPTIG00000021925) #17	PACRG (ENSPTIG00000004368) #20	ENSPTIG00000007481	ENSPTIG00000002521	QKI (ENSPTIG00000008797) #22	C6orf118 (ENSPTIG00000012856) #26	PDE10A (ENSPTIG00000013592) #27	TBXT (ENSPTIG00000017818) #28	SFT2D1 (ENSPTIG00000019417) #33	MPC1 (ENSPTIG00000020905) #34	RPS6KA2 (ENSPTIG00000021230) #35	RNASET2 (ENSPTIG00000010220) #36	CEP43 (ENSPTIG00000011871) #37	CCR6 (ENSPTIG00000015495)	UNC93A (ENSPTIG00000017005)
Cat	MODERN SPECIES	236	TCP1 (ENSFCAG00000002846)	MRPL18 (ENSFCAG00000002847)	PNLDC1 (ENSFCAG00000002848)	MAS1 (ENSFCAG00000002849)	IGF2R (ENSFCAG00000002850)	SLC22A1 (ENSFCAG00000002851) #7	SLC22A2 (ENSFCAG00000002852) #9	SLC22A3 (ENSFCAG00000000355) #12	PLG (ENSFCAG00000023975) #13	MAP3K4 (ENSFCAG00000000356) #14	ENSFCAG00000038094	AGPAT4 (ENSFCAG00000000357) #15	PRKN (ENSFCAG00000038081) #17	ENSFCAG00000034013	PACRG (ENSFCAG00000028010) #20	QKI (ENSFCAG00000019399) #22	CB2H6orf118 (ENSFCAG00000045037) #26	PDE10A (ENSFCAG00000012867) #27	TBXT (ENSFCAG00000000777) #28	ENSFCAG00000051868 #32	SFT2D1 (ENSFCAG00000033223) #33	MPC1 (ENSFCAG00000038385) #34	RPS6KA2 (ENSFCAG00000005103) #35	RNASET2 (ENSFCAG00000031545) #36	CEP43 (ENSFCAG00000005106) #37	CCR6 (ENSFCAG00000046616)	GPR31 (ENSFCAG00000044243)	UNC93A (ENSFCAG00000006973)	AFDN (ENSFCAG00000000864)	KIF25 (ENSFCAG00000030309)	FRMD1 (ENSFCAG00000041618)
Caniformia	ANCESTRAL SPECIES	3	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000171186	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Canidae	ANCESTRAL SPECIES	34	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000171186	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Canis_lupus	ANCESTRAL SPECIES		ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT01090000260046.e.b.b.a.b.a.a.b.b.b.b.b.a.a.a.b.b	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000171186	ENSGT00940000157912 #28	ENSGT00390000003582.q.a.b.b.b	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00950000185354	ENSGT00940000162752
Dingo	MODERN SPECIES	125	PNLDC1 (ENSCAFG00020017742)	MAS1 (ENSCAFG00020017759)	IGF2R (ENSCAFG00020017822)	ENSCAFG00020018698 #7	SLC22A2 (ENSCAFG00020018701) #9	ENSCAFG00020018703	SLC22A3 (ENSCAFG00020018716) #12	ENSCAFG00020018797 #13	MAP3K4 (ENSCAFG00020018821) #14	AGPAT4 (ENSCAFG00020018873) #15	ENSCAFG00020018877 #17	ENSCAFG00020018908 #17	ENSCAFG00020018975 #17	ENSCAFG00020018978	ENSCAFG00020019027 #20	QKI (ENSCAFG00020019085) #22	ENSCAFG00020019102	ENSCAFG00020019125	ENSCAFG00020019146	ENSCAFG00020019148	C6orf118 (ENSCAFG00020019164) #26	PDE10A (ENSCAFG00020019197) #27	ENSCAFG00020019279	ENSCAFG00020019285	TBXT (ENSCAFG00020019286) #28	ENSCAFG00020019299	SFT2D1 (ENSCAFG00020019308) #33	ENSCAFG00020019314 #34	RPS6KA2 (ENSCAFG00020019329) #35	ENSCAFG00020019344 #36	CEP43 (ENSCAFG00020019346) #37
Dog	MODERN SPECIES		WTAP (ENSCAFG00845001806)	ACAT2 (ENSCAFG00845001848)	TCP1 (ENSCAFG00845001904)	MRPL18 (ENSCAFG00845001976)	PNLDC1 (ENSCAFG00845001998)	MAS1 (ENSCAFG00845002042)	IGF2R (ENSCAFG00845002089)	SLC22A1 (ENSCAFG00845002132) #7	SLC22A2 (ENSCAFG00845002163) #9	SLC22A3 (ENSCAFG00845002183) #12	PLG (ENSCAFG00845002222) #13	MAP3K4 (ENSCAFG00845002271) #14	AGPAT4 (ENSCAFG00845002356) #15	PRKN (ENSCAFG00845002459) #17	PACRG (ENSCAFG00845002583) #20	QKI (ENSCAFG00845002617) #22	ENSCAFG00845004368	C6orf118 (ENSCAFG00845004390) #26	PDE10A (ENSCAFG00845004510) #27	ENSCAFG00845004656	TBXT (ENSCAFG00845004679) #28	ENSCAFG00845004701	SFT2D1 (ENSCAFG00845004712) #33	MPC1 (ENSCAFG00845004722) #34	RPS6KA2 (ENSCAFG00845004742) #35	RNASET2 (ENSCAFG00845004774) #36	CEP43 (ENSCAFG00845004808) #37	ENSCAFG00845004827	CCR6 (ENSCAFG00845004836)	GPR31 (ENSCAFG00845004842)	ENSCAFG00845004845
Red fox	MODERN SPECIES	119						SLC22A3 (ENSVVUG00000001828) #12	PLG (ENSVVUG00000001801) #13	ENSVVUG00000001770	MAP3K4 (ENSVVUG00000001652) #14	AGPAT4 (ENSVVUG00000001618) #15	ENSVVUG00000001590 #17	ENSVVUG00000001570 #17	ENSVVUG00000001546 #20	ENSVVUG00000001531 #20	ENSVVUG00000001516 #20	QKI (ENSVVUG00000001467) #22	ENSVVUG00000001421 #8	CUNH6orf118 (ENSVVUG00000001400) #26	PDE10A (ENSVVUG00000001300) #27	ENSVVUG00000021701	TBXT (ENSVVUG00000021698) #28	SFT2D1 (ENSVVUG00000021697) #33	MPC1 (ENSVVUG00000021696) #34	RPS6KA2 (ENSVVUG00000021694) #35	RNASET2 (ENSVVUG00000021691) #36	CEP43 (ENSVVUG00000021689) #37	CCR6 (ENSVVUG00000021685)	GPR31 (ENSVVUG00000021684)	ENSVVUG00000021683	TTLL2 (ENSVVUG00000021682)	UNC93A (ENSVVUG00000021681)
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000171186	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Mustelinae	ANCESTRAL SPECIES	141														ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00950000183181.A.a	ENSGT00390000018436.a.b
Ferret	MODERN SPECIES	311														ENSMPUG00000006352	ENSMPUG00000006361 #20	QKI (ENSMPUG00000006368) #22	ENSMPUG00000006374	ENSMPUG00000006378	C6orf118 (ENSMPUG00000006389) #26	PDE10A (ENSMPUG00000006396) #27	ENSMPUG00000006413	TBXT (ENSMPUG00000006418) #28	ENSMPUG00000006424 #31	MPC1 (ENSMPUG00000006432) #34	RPS6KA2 (ENSMPUG00000006452) #35	RNASET2 (ENSMPUG00000006468) #36	CEP43 (ENSMPUG00000006531) #37	CCR6 (ENSMPUG00000006543)	GPR31 (ENSMPUG00000020195)	ENSMPUG00000006548	TTLL2 (ENSMPUG00000006555)
American mink	MODERN SPECIES	212															PACRG (ENSNVIG00000018167) #20	QKI (ENSNVIG00000018179) #22	ENSNVIG00000018185	C6orf118 (ENSNVIG00000018192) #26	PDE10A (ENSNVIG00000018209) #27	TBXT (ENSNVIG00000018332) #28	SFT2D1 (ENSNVIG00000018339) #33	MPC1 (ENSNVIG00000018351) #34	RPS6KA2 (ENSNVIG00000018379) #35	RNASET2 (ENSNVIG00000018487) #36
Ursidae	ANCESTRAL SPECIES	22	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000171186	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Ursus	ANCESTRAL SPECIES	81	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00970000197976	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000171186	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Polar bear	MODERN SPECIES	150	MAS1 (ENSUMAG00000011898)	IGF2R (ENSUMAG00000011876)	SLC22A1 (ENSUMAG00000011827) #7	SLC22A2 (ENSUMAG00000011818) #9	SLC22A3 (ENSUMAG00000011813) #12	ENSUMAG00000011793 #13	MAP3K4 (ENSUMAG00000011760) #14	AGPAT4 (ENSUMAG00000011739) #15	ENSUMAG00000011729 #17	ENSUMAG00000011710	ENSUMAG00000011702 #17	ENSUMAG00000011694	ENSUMAG00000011688 #17	ENSUMAG00000011681 #20	ENSUMAG00000011678 #20	QKI (ENSUMAG00000011658) #22	ENSUMAG00000011639	C6orf118 (ENSUMAG00000011626) #26	PDE10A (ENSUMAG00000011612) #27	ENSUMAG00000011603	TBXT (ENSUMAG00000011569) #28	ENSUMAG00000011556 #33	MPC1 (ENSUMAG00000011553) #34	RPS6KA2 (ENSUMAG00000011529) #35	ENSUMAG00000011501 #36	CEP43 (ENSUMAG00000011487) #37	CCR6 (ENSUMAG00000011482)	GPR31 (ENSUMAG00000011480)	ENSUMAG00000011474	UNC93A (ENSUMAG00000011469)	AFDN (ENSUMAG00000009347)
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1	ACAT2 (ENSAMEG00000015430)	TCP1 (ENSAMEG00000015405)	MRPL18 (ENSAMEG00000015398)	PNLDC1 (ENSAMEG00000015371)	MAS1 (ENSAMEG00000019584)	IGF2R (ENSAMEG00000015172)	SLC22A1 (ENSAMEG00000015110) #7	SLC22A2 (ENSAMEG00000015045) #9	SLC22A3 (ENSAMEG00000015037) #12	ENSAMEG00000015960 #13	MAP3K4 (ENSAMEG00000015908) #14	ENSAMEG00000015885 #15	PRKN (ENSAMEG00000015876) #17	PACRG (ENSAMEG00000008449) #20	QKI (ENSAMEG00000008459) #22	ENSAMEG00000027289 #22	ENSAMEG00000028308	C6orf118 (ENSAMEG00000008271) #26	PDE10A (ENSAMEG00000008225) #27	TBXT (ENSAMEG00000009278) #28	SFT2D1 (ENSAMEG00000009311) #33	MPC1 (ENSAMEG00000009318) #34	RPS6KA2 (ENSAMEG00000009322) #35	ENSAMEG00000009376	ENSAMEG00000009382 #36	ENSAMEG00000009406 #37	CCR6 (ENSAMEG00000028123)	ENSAMEG00000009418	ENSAMEG00000024255	ENSAMEG00000009444	ENSAMEG00000009446
Giant Panda	MODERN SPECIES	1	WTAP (ENSAMEG00000025264)	ACAT2 (ENSAMEG00000015430)	TCP1 (ENSAMEG00000015405)	MRPL18 (ENSAMEG00000015398)	PNLDC1 (ENSAMEG00000015371)	MAS1 (ENSAMEG00000019584)	IGF2R (ENSAMEG00000015172)	SLC22A1 (ENSAMEG00000015110) #7	SLC22A2 (ENSAMEG00000015045) #9	SLC22A3 (ENSAMEG00000015037) #12	ENSAMEG00000015960 #13	MAP3K4 (ENSAMEG00000015908) #14	ENSAMEG00000015885 #15	PRKN (ENSAMEG00000015876) #17	PACRG (ENSAMEG00000008449) #20	QKI (ENSAMEG00000008459) #22	ENSAMEG00000027289 #22	ENSAMEG00000028308	C6orf118 (ENSAMEG00000008271) #26	PDE10A (ENSAMEG00000008225) #27	TBXT (ENSAMEG00000009278) #28	SFT2D1 (ENSAMEG00000009311) #33	MPC1 (ENSAMEG00000009318) #34	RPS6KA2 (ENSAMEG00000009322) #35	ENSAMEG00000009376	ENSAMEG00000009382 #36	ENSAMEG00000009406 #37	CCR6 (ENSAMEG00000028123)	ENSAMEG00000009418	ENSAMEG00000024255	ENSAMEG00000009444
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155310.b #22
Hedgehog	MODERN SPECIES	1477																QKI (ENSEEUG00000012054) #22
Common shrew	MODERN SPECIES	983																QKI (ENSSARG00000010852) #22
Atlantogenata	ANCESTRAL SPECIES	96	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000168329	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00420000030417	ENSGT00940000157912 #28	ENSGT00690000103860 #31	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000155310.b #22
Sloth	MODERN SPECIES	1216																QKI (ENSCHOG00000006651) #22
Afrotheria	ANCESTRAL SPECIES	113	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00940000168329	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00940000162752	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Tenrec	MODERN SPECIES	1431																QKI (ENSETEG00000007676) #22
Afrotheria_a	ANCESTRAL SPECIES	116	ENSGT00390000013931.a.b.b	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00940000168329	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00940000162752	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Elephant	MODERN SPECIES	520	ACAT2 (ENSLAFG00000007904)	TCP1 (ENSLAFG00000007909)	MRPL18 (ENSLAFG00000002501)	PNLDC1 (ENSLAFG00000030189)	MAS1 (ENSLAFG00000001539)	IGF2R (ENSLAFG00000017191)	SLC22A1 (ENSLAFG00000011681) #7	SLC22A2 (ENSLAFG00000011288) #9	SLC22A3 (ENSLAFG00000005825) #12	ENSLAFG00000004237 #13	MAP3K4 (ENSLAFG00000012768) #14	AGPAT4 (ENSLAFG00000021414) #15	ENSLAFG00000031170	ENSLAFG00000003358	PACRG (ENSLAFG00000002732) #20	QKI (ENSLAFG00000021654) #22	C6orf118 (ENSLAFG00000001672) #26	ENSLAFG00000001674 #27	TBXT (ENSLAFG00000012505) #28	ENSLAFG00000027160	MPC1 (ENSLAFG00000025901) #34	RPS6KA2 (ENSLAFG00000027838) #35	RNASET2 (ENSLAFG00000003359) #36	CEP43 (ENSLAFG00000008016) #37	CCR6 (ENSLAFG00000020827)	GPR31 (ENSLAFG00000022903)	TTLL2 (ENSLAFG00000011626)	AFDN (ENSLAFG00000002771)	ENSLAFG00000000840	ENSLAFG00000030561	SMOC2 (ENSLAFG00000000049)
Hyrax	MODERN SPECIES	1101																ENSPCAG00000007832 #22
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a.`b.a.a.b	ENSGT01030000234639.A.a.`b.a.b	ENSGT01030000234639.A.a.ab	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000168329	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a.`b.a.a.b	ENSGT01030000234639.A.a.`b.a.b	ENSGT01030000234639.A.a.ab	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000168329	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956 #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A.a	ENSGT00530000063359.A.b
Diprotodontia	ANCESTRAL SPECIES	15	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a.`b.a.a.b	ENSGT01030000234639.A.a.ab	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000168329	ENSGT00940000157330 #20	ENSGT00940000155310.b #22
Diprotodontia_a	ANCESTRAL SPECIES	43	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a.`b.a.a.b	ENSGT01030000234639.A.a.ab	ENSGT00390000013943	ENSGT00940000162065 #7	ENSGT00940000155089 #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000168329	ENSGT00940000157330 #20	ENSGT00940000155310.b #22
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1190	ENSVURG00010018091	ENSVURG00010018103	ENSVURG00010018143 #7	ENSVURG00010018160 #9	ENSVURG00010018225 #12	ENSVURG00010018231 #12	ENSVURG00010018243 #13	ENSVURG00010018264 #14	ENSVURG00010018293 #15	ENSVURG00010018305	ENSVURG00010018308 #17	ENSVURG00010018316 #17	ENSVURG00010018319	ENSVURG00010018324 #20	ENSVURG00010018331 #20	ENSVURG00010018341 #22	ENSVURG00010018354	ENSVURG00010018358	ENSVURG00010018363	ENSVURG00010018366	ENSVURG00010018374	ENSVURG00010018380	ENSVURG00010018398	ENSVURG00010018440	ENSVURG00010018517	ENSVURG00010018529	ENSVURG00010018545	ENSVURG00010018599	ENSVURG00010018668	ENSVURG00010018671	ENSVURG00010018676
Common wonbat	MODERN SPECIES	1190	ENSVURG00010019059	ENSVURG00010019063	ENSVURG00010019080	ENSVURG00010019132 #7	ENSVURG00010019143 #9	ENSVURG00010019160 #12	ENSVURG00010019170 #13	ENSVURG00010019181 #14	ENSVURG00010019211 #15	ENSVURG00010019215	ENSVURG00010019218 #17	ENSVURG00010019222 #17	ENSVURG00010019224	ENSVURG00010019227 #20	ENSVURG00010019237 #20	ENSVURG00010019245 #22	ENSVURG00010019252
koala	MODERN SPECIES	25	ENSPCIG00000007796	MAS1 (ENSPCIG00000019932)	IGF2R (ENSPCIG00000019709)	SLC22A1 (ENSPCIG00000019702) #7	SLC22A2 (ENSPCIG00000004270) #9	SLC22A3 (ENSPCIG00000019698) #12	ENSPCIG00000019697 #13	MAP3K4 (ENSPCIG00000019688) #14	AGPAT4 (ENSPCIG00000019684) #15	ENSPCIG00000019683 #17	ENSPCIG00000022936 #17	ENSPCIG00000006520	ENSPCIG00000006522	ENSPCIG00000034977 #20	ENSPCIG00000031508 #20	QKI (ENSPCIG00000020191) #22
Wallaby	MODERN SPECIES	2146																QKI (ENSMEUG00000008112) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000031794	ENSSHAG00000026410	ENSSHAG00000022705	MAS1 (ENSSHAG00000001441)	IGF2R (ENSSHAG00000015828)	SLC22A1 (ENSSHAG00000016135) #7	SLC22A2 (ENSSHAG00000016344) #9	SLC22A3 (ENSSHAG00000016633) #12	ENSSHAG00000000112 #13	ENSSHAG00000021967	ENSSHAG00000004375 #14	ENSSHAG00000025577 #17	ENSSHAG00000029251 #17	AGPAT4 (ENSSHAG00000005957) #15	PACRG (ENSSHAG00000024668) #20	QKI (ENSSHAG00000028391) #22	ENSSHAG00000018375 #26	PDE10A (ENSSHAG00000018469) #27	ENSSHAG00000024973	TBXT (ENSSHAG00000018904) #28	ENSSHAG00000025239 #32	SFT2D1 (ENSSHAG00000027257) #33	ENSSHAG00000022097 #34	RPS6KA2 (ENSSHAG00000006398) #35	RNASET2 (ENSSHAG00000011073) #36	CEP43 (ENSSHAG00000011825) #37	CCR6 (ENSSHAG00000012662)	ENSSHAG00000021292	ENSSHAG00000013247	ENSSHAG00000013448	ENSSHAG00000013706
Opossum	MODERN SPECIES	1	SLC22A1 (ENSMODG00000006918) #7	SLC22A2 (ENSMODG00000006806) #9	SLC22A3 (ENSMODG00000006771) #12	ENSMODG00000006692 #13	MAP3K4 (ENSMODG00000006594) #14	AGPAT4 (ENSMODG00000006531) #15	ENSMODG00000027665 #17	ENSMODG00000029680 #17	ENSMODG00000006493	ENSMODG00000023274	ENSMODG00000043631	ENSMODG00000047373	ENSMODG00000040616 #20	ENSMODG00000023273 #20	ENSMODG00000049428 #20	QKI (ENSMODG00000006434) #22	ENSMODG00000006367 #26	PDE10A (ENSMODG00000006355) #27	ENSMODG00000006322	TBXT (ENSMODG00000006318) #28	SFT2D1 (ENSMODG00000025689) #33	ENSMODG00000023271 #34	RPS6KA2 (ENSMODG00000006241) #35	ENSMODG00000006251	RNASET2 (ENSMODG00000006193) #36	ENSMODG00000006175 #37	CCR6 (ENSMODG00000037007)	GPR31 (ENSMODG00000006120)	ENSMODG00000029483	TTLL2 (ENSMODG00000006111)	UNC93A (ENSMODG00000025690)
Platypus	MODERN SPECIES	11	CNKSR3 (ENSOANG00000014617)	ENSOANG00000014618	ENSOANG00000047481	ENSOANG00000041492	ENSOANG00000014619	ENSOANG00000038578	RGS17 (ENSOANG00000042607)	MTRF1L (ENSOANG00000037135)	FBXO5 (ENSOANG00000005309)	VIP (ENSOANG00000003593)	MYCT1 (ENSOANG00000042329)	ENSOANG00000046889 #17	ENSOANG00000047227 #17	ENSOANG00000041148	ENSOANG00000011163 #20	QKI (ENSOANG00000011161) #22	SOD2 (ENSOANG00000000632)	WTAP (ENSOANG00000038325)	ACAT2 (ENSOANG00000048813)	ENSOANG00000038861	PNLDC1 (ENSOANG00000012199)	TCP1 (ENSOANG00000012198)	MAS1 (ENSOANG00000012996)	IGF2R (ENSOANG00000007296)	SLC22A2 (ENSOANG00000007295) #9	SLC22A3 (ENSOANG00000040412) #12	ENSOANG00000009543 #13	MAP3K4 (ENSOANG00000002832) #14	ENSOANG00000045573	CIAO3 (ENSOANG00000045666)	ENSOANG00000030491
Sauria	ANCESTRAL SPECIES	1	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000162065 #7	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Archelosauria	ANCESTRAL SPECIES	1	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Testudinoidea	ANCESTRAL SPECIES		ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.s #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT01030000234667.b.a	ENSGT00390000007441 #37	ENSGT01030000234667.b.b	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.s #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT01090000260040.b.b.b.a	ENSGT00940000156585	ENSGT00390000013174	ENSGT00940000155194	ENSGT00940000159314	ENSGT00950000182802.B	ENSGT00390000007879	ENSGT00940000153295.a	ENSGT00940000154798.b	ENSGT00960000189661	ENSGT00940000157740	ENSGT00520000055567.b
Abingdon island giant tortoise	MODERN SPECIES	2602															PACRG (ENSCABG00000004851) #20	QKI (ENSCABG00000004854) #22
Goode s thornscrub tortoise	MODERN SPECIES	17	TCP1 (ENSGEVG00005020630)	MRPL18 (ENSGEVG00005020637)	PNLDC1 (ENSGEVG00005020642)	IGF2R (ENSGEVG00005020730)	ENSGEVG00005020912 #9	ENSGEVG00005020924 #9	ENSGEVG00005020929 #12	ENSGEVG00005020932 #12	ENSGEVG00005020936 #13	MAP3K4 (ENSGEVG00005020957) #14	ENSGEVG00005020964	AGPAT4 (ENSGEVG00005020966) #15	ENSGEVG00005020970 #17	PRKN (ENSGEVG00005009001) #17	PACRG (ENSGEVG00005009052) #20	QKI (ENSGEVG00005009095) #22	C6orf118 (ENSGEVG00005009120) #26	PDE10A (ENSGEVG00005009372) #27	TBXT (ENSGEVG00005009997) #28	PRR18 (ENSGEVG00005010158) #32	SFT2D1 (ENSGEVG00005010173) #33	MPC1 (ENSGEVG00005010196) #34	RPS6KA2 (ENSGEVG00005010253) #35	RNASET2 (ENSGEVG00005010632) #36	ENSGEVG00005010659	CEP43 (ENSGEVG00005010775) #37	ENSGEVG00005010882	GPR31 (ENSGEVG00005010901)	ENSGEVG00005010956	TTLL2 (ENSGEVG00005011340)	UNC93A (ENSGEVG00005011351)
Emydidae	ANCESTRAL SPECIES		ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.s #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT01030000234667.b.a	ENSGT00390000007441 #37	ENSGT01030000234667.b.b	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752
Three-toed box turtle	MODERN SPECIES	31	TCP1 (ENSTMTG00000000776)	MRPL18 (ENSTMTG00000000765)	PNLDC1 (ENSTMTG00000000753)	IGF2R (ENSTMTG00000000723)	ENSTMTG00000000699 #9	ENSTMTG00000000691 #9	SLC22A3 (ENSTMTG00000000668) #12	ENSTMTG00000000636 #13	MAP3K4 (ENSTMTG00000000543) #14	AGPAT4 (ENSTMTG00000000495) #15	ENSTMTG00000000469 #17	ENSTMTG00000000447 #17	ENSTMTG00000000439	ENSTMTG00000000424 #17	PACRG (ENSTMTG00000000409) #20	QKI (ENSTMTG00000000384) #22	C6orf118 (ENSTMTG00000000353) #26	PDE10A (ENSTMTG00000000202) #27	TBXT (ENSTMTG00000021998) #28	PRR18 (ENSTMTG00000021992) #32	SFT2D1 (ENSTMTG00000021980) #33	MPC1 (ENSTMTG00000021974) #34	RPS6KA2 (ENSTMTG00000021924) #35	RNASET2 (ENSTMTG00000021913) #36	ENSTMTG00000021910	CEP43 (ENSTMTG00000021905) #37	ENSTMTG00000021900	GPR31 (ENSTMTG00000021897)	ENSTMTG00000021889	TTLL2 (ENSTMTG00000021884)	UNC93A (ENSTMTG00000021881)
painted turtle	MODERN SPECIES	780												ENSCPBG00000019805 #17	ENSCPBG00000019807	ENSCPBG00000019808 #17	PACRG (ENSCPBG00000019814) #20	QKI (ENSCPBG00000019817) #22	ENSCPBG00000019838	C6orf118 (ENSCPBG00000019856) #26	PDE10A (ENSCPBG00000019866) #27	TBXT (ENSCPBG00000019876) #28	SFT2D1 (ENSCPBG00000019885) #33	MPC1 (ENSCPBG00000019891) #34	ENSCPBG00000019894
Chinese turtle	MODERN SPECIES	479															PACRG (ENSPSIG00000012107) #20	QKI (ENSPSIG00000012197) #22	ENSPSIG00000000626
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000162065 #7	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.u.a #13	ENSGT00940000155208.u.b #13	ENSGT00940000155208.v #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00940000168209	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Australian saltwater crocodile	MODERN SPECIES	60	IGF2R (ENSCPRG00005017718)	ENSCPRG00005017706 #9	ENSCPRG00005017702 #9	SLC22A3 (ENSCPRG00005017674) #12	ENSCPRG00005017664 #13	ENSCPRG00005017662 #13	ENSCPRG00005017657 #13	ENSCPRG00005017655	MAP3K4 (ENSCPRG00005017632) #14	ENSCPRG00005017627	AGPAT4 (ENSCPRG00005017619) #15	ENSCPRG00005017613 #17	ENSCPRG00005017605 #17	ENSCPRG00005017599 #17	PACRG (ENSCPRG00005017592) #20	QKI (ENSCPRG00005017579) #22	C6orf118 (ENSCPRG00005017566) #26	PDE10A (ENSCPRG00005017562) #27	TBXT (ENSCPRG00005017551) #28	SFT2D1 (ENSCPRG00005017544) #33	MPC1 (ENSCPRG00005017538) #34	RPS6KA2 (ENSCPRG00005017518) #35	RNASET2 (ENSCPRG00005017504) #36	CEP43 (ENSCPRG00005017492) #37	CCR6 (ENSCPRG00005017488)	ENSCPRG00005017482	GPR31 (ENSCPRG00005017480)	ENSCPRG00005017477	TTLL2 (ENSCPRG00005017471)	UNC93A (ENSCPRG00005017469)	AFDN (ENSCPRG00005017449)
Aves	ANCESTRAL SPECIES	12	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000162065 #7	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.u.a #13	ENSGT00940000155208.u.b #13	ENSGT00940000155208.v #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
African ostrich	MODERN SPECIES	188																QKI (ENSSCUG00000001069) #22	PDE10A (ENSSCUG00000001053) #27	TBXT (ENSSCUG00000001044) #28	SFT2D1 (ENSSCUG00000001038) #33	MPC1 (ENSSCUG00000001035) #34	RPS6KA2 (ENSSCUG00000001026) #35	RNASET2 (ENSSCUG00000001018) #36	CEP43 (ENSSCUG00000001013) #37	CCR6 (ENSSCUG00000001009)	LYST (ENSSCUG00000000828)	GNG4 (ENSSCUG00000000697)	B3GALNT2 (ENSSCUG00000000694)	TBCE (ENSSCUG00000000653)	GGPS1 (ENSSCUG00000000626)	ARID4B (ENSSCUG00000000590)	RBM34 (ENSSCUG00000000551)
Neognathae	ANCESTRAL SPECIES	2	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000162065 #7	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.u.a #13	ENSGT00940000155208.u.b.a.a.a #13	ENSGT00940000155208.u.b.b #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Galloanserae	ANCESTRAL SPECIES	2	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.u.a #13	ENSGT00940000155208.u.b.a.a.a #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Phasianidae	ANCESTRAL SPECIES	3	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.u.a #13	ENSGT00940000155208.u.b.a.a.a #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000155517
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES	21	ACAT2 (ENSCJPG00005005340)	TCP1 (ENSCJPG00005005332)	MRPL18 (ENSCJPG00005005329)	PNLDC1 (ENSCJPG00005005315)	MAS1 (ENSCJPG00005005311)	IGF2R (ENSCJPG00005004540)	ENSCJPG00005004536 #9	ENSCJPG00005004522 #9	SLC22A3 (ENSCJPG00005004486) #12	ENSCJPG00005004448 #13	ENSCJPG00005004435 #13	MAP3K4 (ENSCJPG00005004431) #14	AGPAT4 (ENSCJPG00005004426) #15	PRKN (ENSCJPG00005004407) #17	PACRG (ENSCJPG00005004398) #20	ENSCJPG00005004387 #22	PDE10A (ENSCJPG00005004075) #27	TBXT (ENSCJPG00005004058) #28	ENSCJPG00005004044 #32	SFT2D1 (ENSCJPG00005004038) #33	MPC1 (ENSCJPG00005004032) #34	RPS6KA2 (ENSCJPG00005004020) #35	ENSCJPG00005004017	RNASET2 (ENSCJPG00005004012) #36	CEP43 (ENSCJPG00005004007) #37	CCR6 (ENSCJPG00005004006)	ENSCJPG00005004005	TTLL2 (ENSCJPG00005004004)	UNC93A (ENSCJPG00005003999)	AFDN (ENSCJPG00005003980)	KIF25 (ENSCJPG00005003978)
Japanese quail	MODERN SPECIES	11	SPIDR (ENSCJPG00005009985)	ENSCJPG00005009984	MAPRE2 (ENSCJPG00005009982)	DTNA (ENSCJPG00005009975)	NOL4 (ENSCJPG00005009965)	ASXL3 (ENSCJPG00005009958)	ENSCJPG00005009955	KLHL14 (ENSCJPG00005009941)	ENSCJPG00005009933	GAREM1 (ENSCJPG00005009930)	MEP1B (ENSCJPG00005009919)	RNF138 (ENSCJPG00005009915)	TRAPPC8 (ENSCJPG00005009907)	ENSCJPG00005009898	ENSCJPG00005009897	ENSCJPG00005009891 #22	TTR (ENSCJPG00005009886)	B4GALT6 (ENSCJPG00005009874)	DSG2 (ENSCJPG00005009873)	ENSCJPG00005009872	ENSCJPG00005009871	CDH2 (ENSCJPG00005009862)	CHST9 (ENSCJPG00005009853)	AQP4 (ENSCJPG00005009848)	KCTD1 (ENSCJPG00005009840)	TAF4B (ENSCJPG00005009836)	SS18 (ENSCJPG00005009831)	ZNF521 (ENSCJPG00005009819)	ENSCJPG00005009807	ENSCJPG00005009806	IMPACT (ENSCJPG00005009803)
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.u.a #13	ENSGT00940000155208.u.b.a.a.a #13	ENSGT00940000155208.u.b.b #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00950000183181.A.a
Chicken	MODERN SPECIES	22	ACAT2 (ENSGALG00010004446)	TCP1 (ENSGALG00010004434)	MRPL18 (ENSGALG00010004424)	PNLDC1 (ENSGALG00010004390)	MAS1 (ENSGALG00010006448)	IGF2R (ENSGALG00010006351)	ENSGALG00010006339 #9	ENSGALG00010006318 #9	SLC22A3 (ENSGALG00010006293) #12	PLG (ENSGALG00010007226) #13	ENSGALG00010006269 #13	MAP3K4 (ENSGALG00010006260) #14	AGPAT4 (ENSGALG00010006227) #15	PRKN (ENSGALG00010006183) #17	PACRG (ENSGALG00010006068) #20	QKI (ENSGALG00010006041) #22	PDE10A (ENSGALG00010005999) #27	TBXT (ENSGALG00010005911) #28	PRR18 (ENSGALG00010005903) #32	SFT2D1 (ENSGALG00010005893) #33	MPC1L (ENSGALG00010005861) #34	RPS6KA2 (ENSGALG00010005839) #35	RNASET2 (ENSGALG00010005789) #36	FGFR1OP (ENSGALG00010006486) #37	CCR6 (ENSGALG00010006499)	ENSGALG00010004876	TTLL2 (ENSGALG00010004846)	AFDN (ENSGALG00010004951)	KIF25 (ENSGALG00010004927)	FRMD1 (ENSGALG00010004907)	DACT2 (ENSGALG00010006621)
Anatidae	ANCESTRAL SPECIES		ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.u.b.b #13	ENSGT00940000155208.u.b.a.a.b #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00960000192593	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237
Pink-footed goose	MODERN SPECIES	104										ENSABRG00000008490 #13	ENSABRG00000008494 #13	MAP3K4 (ENSABRG00000008512) #14	AGPAT4 (ENSABRG00000008585) #15	PRKN (ENSABRG00000008607) #17	PACRG (ENSABRG00000008637) #20	QKI (ENSABRG00000008649) #22	ENSABRG00000008844	C6orf118 (ENSABRG00000008906) #26	PDE10A (ENSABRG00000008928) #27	TBXT (ENSABRG00000009042) #28	PRR18 (ENSABRG00000009063) #32	SFT2D1 (ENSABRG00000009073) #33	MPC1 (ENSABRG00000009105) #34	RPS6KA2 (ENSABRG00000009159) #35	RNASET2 (ENSABRG00000009247) #36	CEP43 (ENSABRG00000009268) #37	CCR6 (ENSABRG00000009287)
Duck	MODERN SPECIES	21	ACAT2 (ENSAPLG00000006048)	TCP1 (ENSAPLG00000006259)	MRPL18 (ENSAPLG00000006870)	PNLDC1 (ENSAPLG00000007014)	MAS1 (ENSAPLG00000000729)	IGF2R (ENSAPLG00000007173)	ENSAPLG00000007770 #9	ENSAPLG00000008773 #9	SLC22A3 (ENSAPLG00000009972) #12	ENSAPLG00000010099 #13	ENSAPLG00000025814	MAP3K4 (ENSAPLG00000011460) #14	AGPAT4 (ENSAPLG00000012386) #15	PRKN (ENSAPLG00000012643) #17	PACRG (ENSAPLG00000010267) #20	QKI (ENSAPLG00000010080) #22	ENSAPLG00000028615	ENSAPLG00000026502	C6orf118 (ENSAPLG00000010023) #26	PDE10A (ENSAPLG00000009479) #27	TBXT (ENSAPLG00000018385) #28	SFT2D1 (ENSAPLG00000012881) #33	MPC1 (ENSAPLG00000017567) #34	RPS6KA2 (ENSAPLG00000011253) #35	RNASET2 (ENSAPLG00000010821) #36	CEP43 (ENSAPLG00000010607) #37	CCR6 (ENSAPLG00000010486)	TTLL2 (ENSAPLG00000001705)	UNC93A (ENSAPLG00000002434)	AFDN (ENSAPLG00000002298)	KIF25 (ENSAPLG00000016274)
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000162065 #7	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.u.a #13	ENSGT00940000155208.u.b.a.b #13	ENSGT00940000155208.u.b.b #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00990000212037	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.u.a #13	ENSGT00940000155208.u.b.a.b #13	ENSGT00940000155208.u.b.b #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00990000212037	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00960000189534	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000167703
Golden eagle	MODERN SPECIES	24	WTAP (ENSACCG00020005003)	ACAT2 (ENSACCG00020004990)	TCP1 (ENSACCG00020004976)	MRPL18 (ENSACCG00020004966)	PNLDC1 (ENSACCG00020004951)	MAS1 (ENSACCG00020004937)	IGF2R (ENSACCG00020003984)	ENSACCG00020001849 #9	ENSACCG00020001825 #9	SLC22A3 (ENSACCG00020001790) #12	ENSACCG00020001718 #13	MAP3K4 (ENSACCG00020001556) #14	AGPAT4 (ENSACCG00020001461) #15	PRKN (ENSACCG00020001423) #17	PACRG (ENSACCG00020001381) #20	QKI (ENSACCG00020001360) #22	PDE10A (ENSACCG00020001331) #27	TBXT (ENSACCG00020001297) #28	SFT2D1 (ENSACCG00020001265) #33	MPC1 (ENSACCG00020001249) #34	RPS6KA2 (ENSACCG00020001205) #35	ENSACCG00020001176	RNASET2 (ENSACCG00020001160) #36	CEP43 (ENSACCG00020001119) #37	CCR6 (ENSACCG00020001101)	ENSACCG00020001090	ENSACCG00020001075	ENSACCG00020001063	ENSACCG00020001052	ENSACCG00020001042	SDR39U1 (ENSACCG00020001021)
Kakapo	MODERN SPECIES	2	ACAT2 (ENSSHBG00005011447)	TCP1 (ENSSHBG00005011488)	MRPL18 (ENSSHBG00005011525)	PNLDC1 (ENSSHBG00005011555)	MAS1 (ENSSHBG00005011587)	IGF2R (ENSSHBG00005013283)	SLC22A2 (ENSSHBG00005020076) #9	SLC22A3 (ENSSHBG00005020081) #12	ENSSHBG00005020135 #13	ENSSHBG00005020334 #13	ENSSHBG00005020337 #13	ENSSHBG00005020341 #13	AGPAT4 (ENSSHBG00005020401) #15	PRKN (ENSSHBG00005020412) #17	PACRG (ENSSHBG00005020428) #20	QKI (ENSSHBG00005020433) #22	PDE10A (ENSSHBG00005020493) #27	TBXT (ENSSHBG00005020548) #28	PRR18 (ENSSHBG00005020555) #32	SFT2D1 (ENSSHBG00005020559) #33	MPC1 (ENSSHBG00005020562) #34	RPS6KA2 (ENSSHBG00005020566) #35	RNASET2 (ENSSHBG00005020575) #36	CEP43 (ENSSHBG00005020582) #37	CCR6 (ENSSHBG00005020586)	ENSSHBG00005020591	ENSSHBG00005020595	UNC93A (ENSSHBG00005020596)	AFDN (ENSSHBG00005020703)	KIF25 (ENSSHBG00005020817)	ENSSHBG00005020830
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000160761	ENSGT00940000164045	ENSGT00390000003256	ENSGT00940000153766.A	ENSGT00950000183100.B	ENSGT00940000153408.A	ENSGT00940000157048	ENSGT00940000155636	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000155208.u.b.b #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00990000212037	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787	ENSGT00950000183181.A.a
Great tit	MODERN SPECIES	22	ENSPMJG00000000325	LRRC73 (ENSPMJG00000000341)	YIPF3 (ENSPMJG00000000350)	POLR1C (ENSPMJG00000000376)	XPO5 (ENSPMJG00000000397)	POLH (ENSPMJG00000000538)	GTPBP2 (ENSPMJG00000000553)	MAD2L1BP (ENSPMJG00000000572)	ENSPMJG00000000582	ENSPMJG00000000596 #13	ENSPMJG00000000606 #13	MAP3K4 (ENSPMJG00000000617) #14	AGPAT4 (ENSPMJG00000000867) #15	PRKN (ENSPMJG00000001036) #17	PACRG (ENSPMJG00000001232) #20	QKI (ENSPMJG00000001265) #22	PDE10A (ENSPMJG00000001349) #27	TBXT (ENSPMJG00000001409) #28	SFT2D1 (ENSPMJG00000001481) #33	MPC1 (ENSPMJG00000001484) #34	RPS6KA2 (ENSPMJG00000001558) #35	ENSPMJG00000001578	RNASET2 (ENSPMJG00000001581) #36	CEP43 (ENSPMJG00000001586) #37	CCR6 (ENSPMJG00000001598)	ENSPMJG00000001619	UNC93A (ENSPMJG00000001629)	AFDN (ENSPMJG00000001693)	ENSPMJG00000001762	ENSPMJG00000001768	DACT2 (ENSPMJG00000001809)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000160761	ENSGT00940000164045	ENSGT00390000003256	ENSGT00940000153766.A	ENSGT00950000183100.B	ENSGT00940000153408.A	ENSGT00940000157048	ENSGT00940000155636	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000155208.u.b.b #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787	ENSGT00950000183181.A.a	ENSGT00940000165210.a.a
Flycatcher	MODERN SPECIES	21	DLK2 (ENSFALG00000028588)	ENSFALG00000012070	ENSFALG00000012158	LRRC73 (ENSFALG00000012083)	YIPF3 (ENSFALG00000012092)	POLR1C (ENSFALG00000012111)	XPO5 (ENSFALG00000012130)	POLH (ENSFALG00000012144)	GTPBP2 (ENSFALG00000012153)	MAD2L1BP (ENSFALG00000012156)	ENSFALG00000012162 #13	MAP3K4 (ENSFALG00000012168) #14	AGPAT4 (ENSFALG00000012170) #15	PRKN (ENSFALG00000012173) #17	PACRG (ENSFALG00000028276) #20	QKI (ENSFALG00000012183) #22	PDE10A (ENSFALG00000012196) #27	TBXT (ENSFALG00000012218) #28	SFT2D1 (ENSFALG00000012238) #33	MPC1 (ENSFALG00000029027) #34	RPS6KA2 (ENSFALG00000012267) #35	ENSFALG00000026823	RNASET2 (ENSFALG00000012299) #36	CEP43 (ENSFALG00000012317) #37	CCR6 (ENSFALG00000012331)	ENSFALG00000012339	AFDN (ENSFALG00000012348)	KIF25 (ENSFALG00000012354)	ENSFALG00000024562	DACT2 (ENSFALG00000012374)	ENSFALG00000003039
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000160761	ENSGT00940000164045	ENSGT00390000003256	ENSGT00940000153766.A	ENSGT00950000183100.B	ENSGT00940000153408.A	ENSGT00940000157048	ENSGT00940000155636	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000155208.u.b.b #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787	ENSGT00950000183181.A.a	ENSGT00940000165210.a.a
Medium ground finch	MODERN SPECIES	2	ENSGFOG00000001376	DLK2 (ENSGFOG00000001388)	ENSGFOG00000001396	LRRC73 (ENSGFOG00000001411)	YIPF3 (ENSGFOG00000001426)	POLR1C (ENSGFOG00000001471)	XPO5 (ENSGFOG00000001501)	POLH (ENSGFOG00000001545)	GTPBP2 (ENSGFOG00000001562)	ENSGFOG00000001595	ENSGFOG00000001616 #13	MAP3K4 (ENSGFOG00000001636) #14	AGPAT4 (ENSGFOG00000001673) #15	PRKN (ENSGFOG00000001685) #17	PACRG (ENSGFOG00000001701) #20	QKI (ENSGFOG00000001715) #22	PDE10A (ENSGFOG00000001765) #27	TBXT (ENSGFOG00000001906) #28	SFT2D1 (ENSGFOG00000001923) #33	MPC1 (ENSGFOG00000001931) #34	RPS6KA2 (ENSGFOG00000001944) #35	RNASET2 (ENSGFOG00000001966) #36	CEP43 (ENSGFOG00000001972) #37	CCR6 (ENSGFOG00000001979)	ENSGFOG00000001983	UNC93A (ENSGFOG00000001997)	AFDN (ENSGFOG00000002033)	KIF25 (ENSGFOG00000002173)	FRMD1 (ENSGFOG00000002193)	DACT2 (ENSGFOG00000002239)	ENSGFOG00000002285
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000160761	ENSGT00940000164045	ENSGT00390000003256	ENSGT00940000153766.A	ENSGT00950000183100.B	ENSGT00940000153408.A	ENSGT00940000157048	ENSGT00940000155636	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000155208.u.b.b #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00950000183181.A.a	ENSGT00940000165210.a.a	ENSGT00940000165210.a.b
Common canary	MODERN SPECIES	74														PDE10A (ENSSCAG00000016731) #27	PACRG (ENSSCAG00000016703) #20	QKI (ENSSCAG00000016699) #22
Zebra finch	MODERN SPECIES	23	QPCT (ENSTGUG00000008529)	SLC30A6 (ENSTGUG00000008515)	ENSTGUG00000027929	SPAST (ENSTGUG00000008494)	DPY30 (ENSTGUG00000008482)	MEMO1 (ENSTGUG00000022722)	SRD5A2 (ENSTGUG00000008454)	ENSTGUG00000022144	ENSTGUG00000008437	SCCPDH (ENSTGUG00000008414)	ENSTGUG00000014203	ENSTGUG00000015327	MAP3K4 (ENSTGUG00000009273) #14	PRKN (ENSTGUG00000009367) #17	PACRG (ENSTGUG00000009376) #20	QKI (ENSTGUG00000009383) #22	PDE10A (ENSTGUG00000009390) #27	TBXT (ENSTGUG00000009448) #28	SFT2D1 (ENSTGUG00000009460) #33	MPC1 (ENSTGUG00000009482) #34	RPS6KA2 (ENSTGUG00000009488) #35	RNASET2 (ENSTGUG00000027712) #36	CEP43 (ENSTGUG00000009547) #37	CCR6 (ENSTGUG00000009563)	ENSTGUG00000023539	UNC93A (ENSTGUG00000009567)	AFDN (ENSTGUG00000009578)	KIF25 (ENSTGUG00000009635)	ENSTGUG00000009646	ENSTGUG00000018926	DACT2 (ENSTGUG00000026616)
Lepidosauria	ANCESTRAL SPECIES		ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
tuatara	MODERN SPECIES	185												ENSSPUG00000012117 #17	ENSSPUG00000012151 #17	ENSSPUG00000012159	PACRG (ENSSPUG00000012172) #20	QKI (ENSSPUG00000012200) #22
Episquamata	ANCESTRAL SPECIES		ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a.c.a.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00940000168209	ENSGT00960000189534	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Laterata	ANCESTRAL SPECIES	4	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000006394	ENSGT00940000153167.A.a	ENSGT01030000234639.A.a.c.a.a	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00940000168209	ENSGT00960000189534	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A
Common wall lizard	MODERN SPECIES	11	TCP1 (ENSPMRG00000000681)	ENSPMRG00000000709	PNLDC1 (ENSPMRG00000000755)	ENSPMRG00000000891	IGF2R (ENSPMRG00000001320)	ENSPMRG00000002151 #9	ENSPMRG00000002157 #9	SLC22A3 (ENSPMRG00000002162) #12	ENSPMRG00000002175 #13	MAP3K4 (ENSPMRG00000002197) #14	ENSPMRG00000002214	AGPAT4 (ENSPMRG00000002221) #15	PRKN (ENSPMRG00000002228) #17	ENSPMRG00000002245	PACRG (ENSPMRG00000002251) #20	QKI (ENSPMRG00000002260) #22	C6orf118 (ENSPMRG00000002274) #26	PDE10A (ENSPMRG00000002283) #27	TBXT (ENSPMRG00000002319) #28	ENSPMRG00000002328	PRR18 (ENSPMRG00000002338) #32	SFT2D1 (ENSPMRG00000002343) #33	MPC1 (ENSPMRG00000002351) #34	RPS6KA2 (ENSPMRG00000002868) #35	RNASET2 (ENSPMRG00000004913) #36	CEP43 (ENSPMRG00000004931) #37	CCR6 (ENSPMRG00000004939)	ENSPMRG00000004945	ENSPMRG00000004951	TTLL2 (ENSPMRG00000004959)	UNC93A (ENSPMRG00000004964)
Argentine black and white tegu	MODERN SPECIES	2	ACAT2 (ENSSMRG00000022224)	TCP1 (ENSSMRG00000022221)	PNLDC1 (ENSSMRG00000022220)	ENSSMRG00000022218	ENSSMRG00000022217	IGF2R (ENSSMRG00000022216)	ENSSMRG00000022215 #9	ENSSMRG00000022214 #9	SLC22A3 (ENSSMRG00000022213) #12	ENSSMRG00000022205 #13	MAP3K4 (ENSSMRG00000022204) #14	AGPAT4 (ENSSMRG00000022202) #15	PRKN (ENSSMRG00000022201) #17	ENSSMRG00000022199	PACRG (ENSSMRG00000022198) #20	QKI (ENSSMRG00000022196) #22	ENSSMRG00000022194	ENSSMRG00000022193	C6orf118 (ENSSMRG00000022189) #26	PDE10A (ENSSMRG00000022188) #27	TBXT (ENSSMRG00000022186) #28	PRR18 (ENSSMRG00000022183) #32	SFT2D1 (ENSSMRG00000022182) #33	MPC1 (ENSSMRG00000022180) #34	RPS6KA2 (ENSSMRG00000022178) #35	RNASET2 (ENSSMRG00000022176) #36	CEP43 (ENSSMRG00000022175) #37	CCR6 (ENSSMRG00000022174)	ENSSMRG00000022173	ENSSMRG00000022172	ENSSMRG00000022171
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000153167.A.a	ENSGT01030000234639.A.a.c.a.b	ENSGT01030000234639.A.a.c.b	ENSGT01030000234639.A.a.d	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT01030000234667.b	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166
Lizard	MODERN SPECIES		ENSACAG00000003650 #9	ENSACAG00000003452 #9	SLC22A3 (ENSACAG00000003423) #12	ENSACAG00000003225 #13	ENSACAG00000044185	MAP3K4 (ENSACAG00000003094) #14	AGPAT4 (ENSACAG00000002997) #15	ENSACAG00000038927 #7	ENSACAG00000044906	ENSACAG00000035210	PRKN (ENSACAG00000002888) #17	ENSACAG00000040389	ENSACAG00000035215	PACRG (ENSACAG00000003319) #20	ENSACAG00000037263	QKI (ENSACAG00000003270) #22	ENSACAG00000038505	ENSACAG00000041987	ENSACAG00000039144	ENSACAG00000034580	UST (ENSACAG00000007028)	SASH1 (ENSACAG00000007050)	ENSACAG00000042974	ENSACAG00000042908	SAMD5 (ENSACAG00000007109)	ENSACAG00000004760	ENSACAG00000042421	STXBP5 (ENSACAG00000007114)	ADGB (ENSACAG00000007271)	RAB32 (ENSACAG00000036910)	ENSACAG00000045068
Elapidae	ANCESTRAL SPECIES		ENSGT00940000153167.A.a	ENSGT01030000234639.A.a.c.a.a	ENSGT01030000234639.A.a.c.b	ENSGT01030000234639.A.a.d	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.r #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT01030000234639.A.a.c.a.b	ENSGT01030000234639.A.a.c.a.a	ENSGT01030000234639.A.a.c.b	ENSGT01030000234639.A.a.d	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.r #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT01030000234639.A.a.c.a.b	ENSGT01030000234639.A.a.c.a.a	ENSGT01030000234639.A.a.c.b	ENSGT01030000234639.A.a.d	ENSGT00390000013943	ENSGT00940000155089.h #9	ENSGT00940000155089.g #9	ENSGT00940000160810 #12	ENSGT00940000155208.r #13	ENSGT01030000234985	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00390000011034 #17	ENSGT00950000186343	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33	ENSGT00510000046988 #34	ENSGT00940000159956.j #35	ENSGT00640000091563.a #36	ENSGT00390000007441 #37	ENSGT00530000063927.a.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787
Eastern brown snake	MODERN SPECIES	26	PNLDC1 (ENSPTXG00000001515)	ENSPTXG00000001522	ENSPTXG00000001525	ENSPTXG00000001528	IGF2R (ENSPTXG00000001694)	ENSPTXG00000007955 #9	ENSPTXG00000007957 #9	SLC22A3 (ENSPTXG00000007958) #12	ENSPTXG00000007960 #13	MAP3K4 (ENSPTXG00000007968) #14	ENSPTXG00000008478	AGPAT4 (ENSPTXG00000008479) #15	PRKN (ENSPTXG00000008480) #17	ENSPTXG00000008481	PACRG (ENSPTXG00000008482) #20	QKI (ENSPTXG00000008483) #22	C6orf118 (ENSPTXG00000008484) #26	PDE10A (ENSPTXG00000008485) #27	TBXT (ENSPTXG00000008538) #28	PRR18 (ENSPTXG00000008539) #32	SFT2D1 (ENSPTXG00000008540) #33	MPC1 (ENSPTXG00000008541) #34	RPS6KA2 (ENSPTXG00000008542) #35	RNASET2 (ENSPTXG00000008543) #36	CEP43 (ENSPTXG00000008544) #37	ENSPTXG00000008545	ENSPTXG00000008546	TTLL2 (ENSPTXG00000008547)	UNC93A (ENSPTXG00000008548)	AFDN (ENSPTXG00000008551)	KIF25 (ENSPTXG00000008552)
Mainland tiger snake	MODERN SPECIES	70	ENSNSUG00000015717	IGF2R (ENSNSUG00000015715)	ENSNSUG00000015713 #9	ENSNSUG00000015712 #9	SLC22A3 (ENSNSUG00000015711) #12	ENSNSUG00000015529 #13	ENSNSUG00000015519	MAP3K4 (ENSNSUG00000015033) #14	AGPAT4 (ENSNSUG00000015028) #15	ENSNSUG00000015027	ENSNSUG00000015026	PRKN (ENSNSUG00000015025) #17	ENSNSUG00000015024	PACRG (ENSNSUG00000015023) #20	ENSNSUG00000015022 #20	QKI (ENSNSUG00000015021) #22	C6orf118 (ENSNSUG00000015018) #26	PDE10A (ENSNSUG00000014998) #27	TBXT (ENSNSUG00000014997) #28	SFT2D1 (ENSNSUG00000014996) #33	MPC1 (ENSNSUG00000014995) #34	RPS6KA2 (ENSNSUG00000014994) #35	RNASET2 (ENSNSUG00000014993) #36	CEP43 (ENSNSUG00000014936) #37	TTLL2 (ENSNSUG00000014933)	UNC93A (ENSNSUG00000014930)	AFDN (ENSNSUG00000014037)	KIF25 (ENSNSUG00000014036)	FRMD1 (ENSNSUG00000014035)	DACT2 (ENSNSUG00000014033)	ENSNSUG00000014032
Indian cobra	MODERN SPECIES		ENSNNAG00000014119	ENSNNAG00000014108	IGF2R (ENSNNAG00000013937)	ENSNNAG00000013902 #9	ENSNNAG00000013839 #9	SLC22A3 (ENSNNAG00000013742) #12	ENSNNAG00000013719 #13	ENSNNAG00000013701 #13	ENSNNAG00000013630 #13	ENSNNAG00000013607	MAP3K4 (ENSNNAG00000013454) #14	AGPAT4 (ENSNNAG00000013435) #15	PRKN (ENSNNAG00000013405) #17	ENSNNAG00000013395	PACRG (ENSNNAG00000013371) #20	QKI (ENSNNAG00000013315) #22	C6orf118 (ENSNNAG00000013295) #26	ENSNNAG00000013280	PDE10A (ENSNNAG00000012894) #27	TBXT (ENSNNAG00000012781) #28	PRR18 (ENSNNAG00000012767) #32	SFT2D1 (ENSNNAG00000012757) #33	MPC1 (ENSNNAG00000012739) #34	RPS6KA2 (ENSNNAG00000009365) #35	RNASET2 (ENSNNAG00000009189) #36	CEP43 (ENSNNAG00000009119) #37	ENSNNAG00000009035	TTLL2 (ENSNNAG00000009020)	UNC93A (ENSNNAG00000008992)	AFDN (ENSNNAG00000008706)	KIF25 (ENSNNAG00000008631)
Anura	ANCESTRAL SPECIES	240											ENSGT00940000160810 #12	ENSGT00940000155208 #13	ENSGT00880000138034 #14	ENSGT00950000182836.b.b.b.b #15	ENSGT00940000157330 #20	ENSGT00940000155310.b #22	ENSGT00940000163882.a.a	ENSGT00390000009877 #26	ENSGT00940000156543 #27	ENSGT00940000157912 #28	ENSGT00390000002164 #32	ENSGT00390000018525.a.a #33
Frog	MODERN SPECIES	5	pigh (ENSXETG00000032968)	pdgfrl.2 (ENSXETG00000023338)	pgbd5 (ENSXETG00000023336)	galnt2 (ENSXETG00000023332)	urb2 (ENSXETG00000023331)	taf5l (ENSXETG00000023330)	capn9 (ENSXETG00000023310)	XB22065091 [provisional:unc93a] (ENSXETG00000034497)	afdn (ENSXETG00000023305)	unc93a.1 (ENSXETG00000044848)	cnksr3 (ENSXETG00000023302)	scaf8 (ENSXETG00000013132)	agpat4 (ENSXETG00000013131) #15	ENSXETG00000047260	pacrg (ENSXETG00000010781) #20	qki (ENSXETG00000015705) #22	ENSXETG00000005367	c6orf118 (ENSXETG00000005368) #26	pde10a (ENSXETG00000005369) #27	ENSXETG00000042559	tbxt (ENSXETG00000026572) #28	PRR18 (ENSXETG00000037784) #32	sft2d1 (ENSXETG00000026578) #33	ENSXETG00000036896	mpc1 (ENSXETG00000025990) #34	trim50 (ENSXETG00000041526)	rps6ka2 (ENSXETG00000025994) #35	cebpz (ENSXETG00000000654)	ndufaf7 (ENSXETG00000000653)	mocs3 (ENSXETG00000024648)	qpct (ENSXETG00000013098)
Leishan spiny toad	MODERN SPECIES	7	PPIL4 (ENSLLEG00000019229)	GINM1 (ENSLLEG00000019103)	KATNA1 (ENSLLEG00000018727)	LATS1 (ENSLLEG00000018651)	NUP43 (ENSLLEG00000018391)	ENSLLEG00000018342	SLC22A3 (ENSLLEG00000018138) #12	ENSLLEG00000017118 #13	ENSLLEG00000017052	ENSLLEG00000016901	MAP3K4 (ENSLLEG00000015990) #14	ENSLLEG00000015794 #15	ENSLLEG00000015637	ENSLLEG00000015527 #20	ENSLLEG00000015474 #20	QKI (ENSLLEG00000014886) #22	MOXD1 (ENSLLEG00000014697)	STX7 (ENSLLEG00000014610)	ENSLLEG00000014550	ENSLLEG00000014525	ENSLLEG00000014505	ENSLLEG00000014454	ENSLLEG00000014439	TAAR1 (ENSLLEG00000014417)	ENSLLEG00000014215	ENSLLEG00000014174	ENSLLEG00000013843	ENSLLEG00000013799	RPS12 (ENSLLEG00000013657)	ENSLLEG00000013637	ENSLLEG00000013612