Mus_A	ANCESTRAL SPECIES	10	ENSGT01030000234626.B #7	ENSGT00550000074878 #8	ENSGT00390000006394 #9	ENSGT00940000153167.A.a #10	ENSGT01030000234639.A.a #12	ENSGT00390000013943	ENSGT00940000162065 #14	ENSGT00940000155089 #15	ENSGT00940000160810 #16	ENSGT00940000155208 #17	ENSGT00880000138034 #18	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #19	ENSGT00390000011034 #20	ENSGT00940000157330 #21	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b #23	ENSGT00390000009877 #24	ENSGT00940000156543 #25	ENSGT00940000157912 #26	ENSGT00690000103860	ENSGT00390000002164 #28	ENSGT00390000018525.a.a.j #27	ENSGT00510000046988.q.b #30	ENSGT01030000234667.b #31	ENSGT00390000007441 #32	ENSGT00640000091563.a #34	ENSGT00400000024673	ENSGT00940000159956 #35	ENSGT00990000203619.A.b.b.a #36	ENSGT00530000063927.a.a #37
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021042 #7	Tcp1 (MGP_CAROLIEiJ_G0021043) #8	Mrpl18 (MGP_CAROLIEiJ_G0021044) #9	Pnldc1 (MGP_CAROLIEiJ_G0021045) #10	Mrgprh (MGP_CAROLIEiJ_G0021046) #11	Mas1 (MGP_CAROLIEiJ_G0021047) #12	MGP_CAROLIEiJ_G0021048 #13	Slc22a1 (MGP_CAROLIEiJ_G0021049) #14	Slc22a2 (MGP_CAROLIEiJ_G0021050) #15	Slc22a3 (MGP_CAROLIEiJ_G0021051) #16	Plg (MGP_CAROLIEiJ_G0021052) #17	Map3k4 (MGP_CAROLIEiJ_G0021053) #18	Agpat4 (MGP_CAROLIEiJ_G0021054) #19	Prkn (MGP_CAROLIEiJ_G0021055) #20	Pacrg (MGP_CAROLIEiJ_G0021056) #21	Qki (MGP_CAROLIEiJ_G0021057) #22	Pabpc6 (MGP_CAROLIEiJ_G0021058) #23	1700010I14Rik (MGP_CAROLIEiJ_G0021059) #24	Pde10a (MGP_CAROLIEiJ_G0021060) #25	T (MGP_CAROLIEiJ_G0021061) #26	Sft2d1 (MGP_CAROLIEiJ_G0021062) #27	Prr18 (MGP_CAROLIEiJ_G0021063) #28	MGP_CAROLIEiJ_G0021064 #29	MGP_CAROLIEiJ_G0021065 #30	Ccr6 (MGP_CAROLIEiJ_G0021066) #31	Cep43 (MGP_CAROLIEiJ_G0021067) #32	MGP_CAROLIEiJ_G0021068 #33	MGP_CAROLIEiJ_G0021069 #34	Rps6ka2 (MGP_CAROLIEiJ_G0021070) #35	Gpr31b (MGP_CAROLIEiJ_G0021071) #36	MGP_CAROLIEiJ_G0021072 #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00550000074878 #8	ENSGT00390000006394 #9	ENSGT00940000153167.A.a #10	ENSGT01030000234639.A.a #12	ENSGT00390000013943	ENSGT00940000162065.c.a #14	ENSGT00940000162065.d #14	ENSGT00940000155089 #15	ENSGT00940000160810 #16	ENSGT00940000155208 #17	ENSGT00880000138034 #18	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #19	ENSGT00390000011034 #20	ENSGT00940000157330 #21	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b #23	ENSGT00700000105447.b.a	ENSGT00940000154721.db.a	ENSGT00390000009877 #24	ENSGT00940000156543 #25	ENSGT00940000157912 #26	ENSGT00690000103860	ENSGT00390000002164 #28	ENSGT00390000018525.a.a.j #27	ENSGT00510000046988.q.b.b.a #30	ENSGT01030000234667.b #31	ENSGT00390000007441 #32	ENSGT00640000091563.a #34	ENSGT00400000024673	ENSGT00940000159956 #35
Mouse	MODERN SPECIES	8	Acat3 (ENSMUSG00000062480) #7	Tcp1 (ENSMUSG00000068039) #8	Mrpl18 (ENSMUSG00000057388) #9	Pnldc1 (ENSMUSG00000073460) #10	Mrgprh (ENSMUSG00000059408) #12	Mas1 (ENSMUSG00000068037) #12	Igf2r (ENSMUSG00000023830)	Slc22a1 (ENSMUSG00000023829) #14	Slc22a2 (ENSMUSG00000040966) #15	Slc22a3 (ENSMUSG00000023828) #16	Plg (ENSMUSG00000059481) #17	Map3k4 (ENSMUSG00000014426) #18	Agpat4 (ENSMUSG00000023827) #19	Prkn (ENSMUSG00000023826) #20	Pacrg (ENSMUSG00000037196) #21	Qki (ENSMUSG00000062078) #22	Pabpc6 (ENSMUSG00000046173) #23	Gm17728 (ENSMUSG00000072968)	1700010I14Rik (ENSMUSG00000023873) #24	Pde10a (ENSMUSG00000023868) #25	T (ENSMUSG00000062327) #26	T2 (ENSMUSG00000058159)	Prr18 (ENSMUSG00000055945) #28	Sft2d1 (ENSMUSG00000073468) #27	Mpc1 (ENSMUSG00000023861) #30	Ccr6 (ENSMUSG00000040899) #31	Cep43 (ENSMUSG00000069135) #32	Rnaset2a (ENSMUSG00000095687) #34	Rsph3a (ENSMUSG00000073471)	Tagap (ENSMUSG00000033450)	Fndc1 (ENSMUSG00000071984)
Mus_C	ANCESTRAL SPECIES	35	ENSGT00550000074878 #8	ENSGT00390000006394 #9	ENSGT00940000153167.A.a #10	ENSGT01030000234639.A.a #12	ENSGT00390000013943	ENSGT00940000162065.c.a #14	ENSGT00940000162065.d #14	ENSGT00940000155089 #15	ENSGT00940000160810 #16	ENSGT00940000155208 #17	ENSGT00880000138034 #18	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #19	ENSGT00390000011034 #20	ENSGT00940000157330 #21	ENSGT00940000155310.b #22	ENSGT00940000153773.a.a.b.e.b #23	ENSGT00700000105447.b.a	ENSGT00940000154721.db.a	ENSGT00390000009877 #24	ENSGT00940000156543 #25
spretus	MODERN SPECIES	8	Acat3 (MGP_SPRETEiJ_G0021978) #7	Tcp1 (MGP_SPRETEiJ_G0021977) #8	Mrpl18 (MGP_SPRETEiJ_G0021976) #9	Pnldc1 (MGP_SPRETEiJ_G0021975) #10	Mrgprh (MGP_SPRETEiJ_G0021974) #12	Mas1 (MGP_SPRETEiJ_G0021973) #12	Igf2r (MGP_SPRETEiJ_G0021972)	Slc22a1 (MGP_SPRETEiJ_G0021971) #14	Slc22a2 (MGP_SPRETEiJ_G0021970) #15	Slc22a3 (MGP_SPRETEiJ_G0021969) #16	Plg (MGP_SPRETEiJ_G0021968) #17	Map3k4 (MGP_SPRETEiJ_G0021967) #18	Agpat4 (MGP_SPRETEiJ_G0021966) #19	Prkn (MGP_SPRETEiJ_G0021965) #20	Pacrg (MGP_SPRETEiJ_G0021964) #21	Qki (MGP_SPRETEiJ_G0021963) #22	Pabpc6 (MGP_SPRETEiJ_G0021962) #23	Gm17728 (MGP_SPRETEiJ_G0021961)	MGP_SPRETEiJ_G0021960	MGP_SPRETEiJ_G0021959	T (MGP_SPRETEiJ_G0021958) #26	Prr18 (MGP_SPRETEiJ_G0021957) #28	MGP_SPRETEiJ_G0021956 #29	Sft2d1 (MGP_SPRETEiJ_G0021955) #27	MGP_SPRETEiJ_G0021954 #30	Ccr6 (MGP_SPRETEiJ_G0021953) #31	Cep43 (MGP_SPRETEiJ_G0021952) #32	MGP_SPRETEiJ_G0021951 #34	MGP_SPRETEiJ_G0021950 #34	MGP_SPRETEiJ_G0021949	MGP_SPRETEiJ_G0021948
Steppe mouse	MODERN SPECIES	3148														ENSMSIG00000014271 #20	Pacrg (ENSMSIG00000014249) #21	Qki (ENSMSIG00000014232) #22	Pabpc6 (ENSMSIG00000014218) #23	Gm17728 (ENSMSIG00000014212)	Ppihl (ENSMSIG00000014204)	1700010I14Rik (ENSMSIG00000014152) #24	Pde10a (ENSMSIG00000013595) #25