Murinae	ANCESTRAL SPECIES	8	ENSGT00940000159132.a #7	ENSGT00940000156502 #8	ENSGT00490000043421 #9	ENSGT00940000158324 #10	ENSGT00940000157135 #11	ENSGT00940000156593 #12	ENSGT00390000018516 #13	ENSGT00940000157150 #14	ENSGT00940000157509 #15	ENSGT00390000012435 #16	ENSGT00900000143162 #17	ENSGT00510000048466 #18	ENSGT00390000007341.a #19	ENSGT00390000018085.a.a.a.b.b.b #20	ENSGT00940000158830 #21	ENSGT00940000154720.b #22	ENSGT00940000155369.A #23	ENSGT00390000003897.s.b.a.a.a #24	ENSGT00390000007395 #25	ENSGT00940000156480 #26	ENSGT00940000154514.b #27	ENSGT00390000005033 #28	ENSGT00940000158712 #29	ENSGT00940000158586 #30	ENSGT00390000012377 #31	ENSGT00730000111477 #32	ENSGT00940000158296 #33	ENSGT00390000017718 #34	ENSGT00950000182767.b.b.d #35	ENSGT00730000111160 #36	ENSGT00390000012948.b #37
Rat	DUPLICATION
Rat	MODERN SPECIES		LOC108349848 (ENSRNOG00000070349)	Synm (ENSRNOG00000014030)	Ttc23 (ENSRNOG00000013877)	Lrrc28 (ENSRNOG00000023274)	Mef2a (ENSRNOG00000047756)	Lysmd4 (ENSRNOG00000050624)	Adamts17 (ENSRNOG00000037080)	Cers3 (ENSRNOG00000013823)	Lins1 (ENSRNOG00000042776)	Asb7 (ENSRNOG00000013795)	Aldh1a3 (ENSRNOG00000052070)	Lrrk1 (ENSRNOG00000012730)	Chsy1 (ENSRNOG00000012698)	Selenos (ENSRNOG00000012576)	Snrpa1 (ENSRNOG00000011932)	ENSRNOG00000070428 #22	Pcsk6 (ENSRNOG00000011526)	AABR07004134.1 (ENSRNOG00000056928)	Tm2d3 (ENSRNOG00000011290)	Tars3 (ENSRNOG00000024460)	Tjp1 (ENSRNOG00000011077)	AABR07004112.1 (ENSRNOG00000016498)	Entrep2 (ENSRNOG00000023496)	Apba2 (ENSRNOG00000016358)	Mcee (ENSRNOG00000016327)	Mphosph10 (ENSRNOG00000016266)	Fan1 (ENSRNOG00000023985)	Mtmr10 (ENSRNOG00000016090)	Trpm1 (ENSRNOG00000015829)	ENSRNOG00000064709	Klf13 (ENSRNOG00000015822)
Rat	MODERN SPECIES	6	Dlgap5 (ENSRNOG00000010721)	Lgals3 (ENSRNOG00000010645)	Mapk1ip1l (ENSRNOG00000011611)	Socs4 (ENSRNOG00000068183)	Wdhd1 (ENSRNOG00000011167)	Gch1 (ENSRNOG00000011039)	ENSRNOG00000070489	Samd4a (ENSRNOG00000010489)	Rpl39-ps12 (ENSRNOG00000029267)	Cgrrf1 (ENSRNOG00000010178)	Gmfb (ENSRNOG00000064480)	Cnih1 (ENSRNOG00000009811)	Cdkn3 (ENSRNOG00000009785)	Bmp4 (ENSRNOG00000009694)	Ddhd1 (ENSRNOG00000009481)	LOC108353033 (ENSRNOG00000068233) #22	Fermt2 (ENSRNOG00000009102)	Gnpnat1 (ENSRNOG00000008641)	Styx (ENSRNOG00000007956)	Psmc6 (ENSRNOG00000007203)	Ero1a (ENSRNOG00000006462)	ENSRNOG00000031251	Gpr137c (ENSRNOG00000026328)	Txndc16 (ENSRNOG00000006334)	AABR07017250.1 (ENSRNOG00000049099)	Ptger2 (ENSRNOG00000050968)	ENSRNOG00000065866	AABR07017241.1 (ENSRNOG00000031307)	LOC120096940 (ENSRNOG00000065026)	LOC498465 (ENSRNOG00000069977)	LOC120093162 (ENSRNOG00000062372)
Rat	MODERN SPECIES	4	Atp1a4 (ENSRNOG00000032378)	Atp1a2 (ENSRNOG00000007290)	Igsf8 (ENSRNOG00000007604)	Kcnj9 (ENSRNOG00000007645)	Kcnj10 (ENSRNOG00000068444)	Pigm (ENSRNOG00000007735)	Slamf9 (ENSRNOG00000008045)	Igsf9 (ENSRNOG00000008054)	Tagln2 (ENSRNOG00000008301)	Cfap45 (ENSRNOG00000008492)	Vsig8 (ENSRNOG00000008668)	Slamf8 (ENSRNOG00000008736)	Fcrl6 (ENSRNOG00000000055)	Dusp23 (ENSRNOG00000022143)	Crp (ENSRNOG00000000053)	LOC108348980 (ENSRNOG00000028939) #22	Apcs (ENSRNOG00000009086)	Or10j5 (ENSRNOG00000009141)	Or10j7 (ENSRNOG00000064078)	Or10j27 (ENSRNOG00000064146)	Or10j3 (ENSRNOG00000062538)	Or10j3b (ENSRNOG00000067763)	Fcer1a (ENSRNOG00000009177)	Or10j2 (ENSRNOG00000049477)	Mptx1 (ENSRNOG00000046165)	Ackr1 (ENSRNOG00000069330)	Cadm3 (ENSRNOG00000003365)	Aim2 (ENSRNOG00000003480)	LOC102556096 (ENSRNOG00000065208)	RGD1562462 (ENSRNOG00000065043)	ENSRNOG00000069878
Mus	ANCESTRAL SPECIES	10	ENSGT00940000156502 #8	ENSGT00490000043421 #9	ENSGT00940000158324 #10	ENSGT00940000157135 #11	ENSGT00940000156593 #12	ENSGT00970000194876	ENSGT00390000018516 #13	ENSGT00940000157150 #14	ENSGT00940000157509 #15	ENSGT00390000012435 #16	ENSGT00900000143162 #17	ENSGT00510000048466 #18	ENSGT00390000007341.a #19	ENSGT00390000018085.a.a.a.b.b.b #20	ENSGT00940000158830 #21	ENSGT00940000154720.b #22	ENSGT00940000155369.A #23	ENSGT00390000003897.s.b.a.a.a #24	ENSGT00390000007395 #25	ENSGT00940000156480 #26	ENSGT00940000154514.b #27	ENSGT00390000005033 #28	ENSGT00940000158712 #29	ENSGT00940000158586 #30	ENSGT00390000012377 #31	ENSGT00730000111477 #32	ENSGT00700000106038.B	ENSGT00940000158296 #33	ENSGT00390000017718 #34	ENSGT00950000182767.b.b.d #35	ENSGT00730000111160 #36
Shrew mouse	MODERN SPECIES	20	Dmac2l (MGP_PahariEiJ_G0029566) #8	L2hgdh (MGP_PahariEiJ_G0029565) #9	Sos2 (MGP_PahariEiJ_G0029564) #10	Vcpkmt (MGP_PahariEiJ_G0029563) #11	Arf6 (MGP_PahariEiJ_G0029562) #12	MGP_PahariEiJ_G0029561	MGP_PahariEiJ_G0029560 #13	Klhdc2 (MGP_PahariEiJ_G0029559) #14	Klhdc1 (MGP_PahariEiJ_G0029558) #15	Pole2 (MGP_PahariEiJ_G0029557) #16	MGP_PahariEiJ_G0029556 #17	Dnaaf2 (MGP_PahariEiJ_G0029555) #18	Mgat2 (MGP_PahariEiJ_G0029554) #19	MGP_PahariEiJ_G0029553 #20	Lrr1 (MGP_PahariEiJ_G0029552) #21	Rps29 (MGP_PahariEiJ_G0029551) #22	Mdga2 (MGP_PahariEiJ_G0029550) #23	Rpl10l (MGP_PahariEiJ_G0029549) #24	Mis18bp1 (MGP_PahariEiJ_G0029548) #25	Fancm (MGP_PahariEiJ_G0029547) #26	Fkbp3 (MGP_PahariEiJ_G0029546) #27	Prpf39 (MGP_PahariEiJ_G0029545) #28	MGP_PahariEiJ_G0029544 #29	Klhl28 (MGP_PahariEiJ_G0029543) #30	Gm527 (MGP_PahariEiJ_G0029542) #31	MGP_PahariEiJ_G0029541 #32	MGP_PahariEiJ_G0029540	Lrfn5 (MGP_PahariEiJ_G0029539) #33	Fbxo33 (MGP_PahariEiJ_G0029538) #34	MGP_PahariEiJ_G0029537 #35	MGP_PahariEiJ_G0029536 #35
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000156502 #8	ENSGT00490000043421 #9	ENSGT00940000158324 #10	ENSGT00940000157135 #11	ENSGT00940000156593 #12	ENSGT00970000194876	ENSGT00390000018516 #13	ENSGT00940000157150 #14	ENSGT00940000157509 #15	ENSGT00390000012435 #16	ENSGT00900000143162 #17	ENSGT00510000048466 #18	ENSGT00390000007341.a #19	ENSGT00390000018085.a.a.a.b.b.b #20	ENSGT00940000158830 #21	ENSGT00940000154720.b #22	ENSGT00940000155369.A #23	ENSGT00390000003897.s.b.a.a.a #24	ENSGT00390000007395 #25	ENSGT00940000156480 #26	ENSGT00940000154514.b #27	ENSGT00390000005033 #28	ENSGT00940000158712 #29	ENSGT00940000158586 #30	ENSGT00390000012377 #31	ENSGT00730000111477 #32	ENSGT00700000106038.B	ENSGT00940000158296 #33	ENSGT00390000017718 #34	ENSGT00950000182767.b.b.d #35	ENSGT00730000111160 #36
Ryukyu mouse	MODERN SPECIES	3	Dmac2l (MGP_CAROLIEiJ_G0017810) #8	L2hgdh (MGP_CAROLIEiJ_G0017809) #9	Sos2 (MGP_CAROLIEiJ_G0017808) #10	Vcpkmt (MGP_CAROLIEiJ_G0017807) #11	Arf6 (MGP_CAROLIEiJ_G0017806) #12	MGP_CAROLIEiJ_G0017805	Nemf (MGP_CAROLIEiJ_G0017804) #13	Klhdc2 (MGP_CAROLIEiJ_G0017803) #14	Klhdc1 (MGP_CAROLIEiJ_G0017802) #15	Pole2 (MGP_CAROLIEiJ_G0017801) #16	MGP_CAROLIEiJ_G0017800 #17	Dnaaf2 (MGP_CAROLIEiJ_G0017799) #18	Mgat2 (MGP_CAROLIEiJ_G0017798) #19	MGP_CAROLIEiJ_G0017797 ##20	Lrr1 (MGP_CAROLIEiJ_G0017796) #21	Rps29 (MGP_CAROLIEiJ_G0017795) #22	Mdga2 (MGP_CAROLIEiJ_G0017794) #23	Rpl10l (MGP_CAROLIEiJ_G0017793) #24	Mis18bp1 (MGP_CAROLIEiJ_G0017792) #25	Fancm (MGP_CAROLIEiJ_G0017791) #26	Fkbp3 (MGP_CAROLIEiJ_G0017790) #27	Prpf39 (MGP_CAROLIEiJ_G0017789) #28	Togaram1 (MGP_CAROLIEiJ_G0017788) #29	Klhl28 (MGP_CAROLIEiJ_G0017787) #30	Gm527 (MGP_CAROLIEiJ_G0017786) #31	MGP_CAROLIEiJ_G0017785 #32	MGP_CAROLIEiJ_G0017784	Lrfn5 (MGP_CAROLIEiJ_G0017783) #33	Fbxo33 (MGP_CAROLIEiJ_G0017782) #34	MGP_CAROLIEiJ_G0017781 #35	MGP_CAROLIEiJ_G0017780 #35
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000156502 #8	ENSGT00490000043421.g #9	ENSGT00940000158324 #10	ENSGT00940000157135 #11	ENSGT00940000156593 #12	ENSGT00970000194876	ENSGT00390000018516 #13	ENSGT00940000157150 #14	ENSGT00940000157509 #15	ENSGT00390000012435 #16	ENSGT00900000143162 #17	ENSGT00510000048466 #18	ENSGT00390000007341.a #19	ENSGT00390000018085.a.a.a.a ##20	ENSGT00940000158830 #21	ENSGT00940000154720.b #22	ENSGT00940000155369.A #23	ENSGT00390000003897.s.b.a.a.a #24	ENSGT00390000007686.b.d.q.a.b	ENSGT00390000007395 #25	ENSGT00940000156480 #26	ENSGT00940000154514.b #27	ENSGT00390000005033 #28	ENSGT00940000158712 #29	ENSGT00940000158586 #30	ENSGT00390000012377 #31	ENSGT00730000111477 #32	ENSGT00700000106038.B	ENSGT00940000158296 #33	ENSGT00390000017718 #34	ENSGT00950000182767.b.b.d #35
Mouse	MODERN SPECIES	3	Cdkl1 (ENSMUSG00000020990) #7	Dmac2l (ENSMUSG00000054894) #8	L2hgdh (ENSMUSG00000020988) #9	Sos2 (ENSMUSG00000034801) #10	Vcpkmt (ENSMUSG00000049882) #11	Arf6 (ENSMUSG00000044147) #12	Nemf (ENSMUSG00000020982) #13	Klhdc2 (ENSMUSG00000020978) #14	Klhdc1 (ENSMUSG00000051890) #15	Pole2 (ENSMUSG00000020974) #16	Dnaaf2 (ENSMUSG00000020973) #18	Mgat2 (ENSMUSG00000043998) #19	Gm49383 (ENSMUSG00000113149)	Rpl36al (ENSMUSG00000049751) #20	Lrr1 (ENSMUSG00000034883) #21	Rps29 (ENSMUSG00000034892) #22	Mdga2 (ENSMUSG00000034912) #23	Rpl10l (ENSMUSG00000060499) #24	Wdr20rt (ENSMUSG00000035560)	Mis18bp1 (ENSMUSG00000047534) #25	Fancm (ENSMUSG00000055884) #26	Fkbp3 (ENSMUSG00000020949) #27	Prpf39 (ENSMUSG00000035597) #28	Togaram1 (ENSMUSG00000035614) #29	Klhl28 (ENSMUSG00000020948) #30	Gm527 (ENSMUSG00000047227) #31	Fscb (ENSMUSG00000043060) #32	Lrfn5 (ENSMUSG00000035653) #33	Fbxo33 (ENSMUSG00000035329) #34	Mia2 (ENSMUSG00000021000) #35	Pnn (ENSMUSG00000020994) #36
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000159132.a #7	ENSGT00940000156502 #8	ENSGT00490000043421.g #9	ENSGT00940000158324 #10	ENSGT00940000157135 #11	ENSGT00940000156593 #12	ENSGT00970000194876	ENSGT00390000018516 #13	ENSGT00940000157150 #14	ENSGT00940000157509 #15	ENSGT00390000012435 #16	ENSGT00900000143162 #17	ENSGT00510000048466 #18	ENSGT00390000007341.a #19	ENSGT00940000158830 #21	ENSGT00940000154720.b #22	ENSGT00940000155369.A #23	ENSGT00390000003897.s.b.a.a.a #24	ENSGT00390000007686.b.d.q.a.b	ENSGT00390000007395 #25	ENSGT00940000156480 #26	ENSGT00940000154514.b #27	ENSGT00390000005033 #28	ENSGT00940000158712 #29	ENSGT00940000158586 #30	ENSGT00390000012377 #31	ENSGT00730000111477 #32	ENSGT00700000106038.B	ENSGT00940000158296 #33	ENSGT00390000017718 #34	ENSGT00950000182767.b.b.d #35
spretus	DUPLICATION
spretus	MODERN SPECIES	3	Cdkl1 (MGP_SPRETEiJ_G0018656) #7	Dmac2l (MGP_SPRETEiJ_G0018655) #8	L2hgdh (MGP_SPRETEiJ_G0018654) #9	Sos2 (MGP_SPRETEiJ_G0018653) #10	Vcpkmt (MGP_SPRETEiJ_G0018652) #11	Arf6 (MGP_SPRETEiJ_G0018651) #12	MGP_SPRETEiJ_G0018650	Nemf (MGP_SPRETEiJ_G0018649) #13	Klhdc2 (MGP_SPRETEiJ_G0018648) #14	Klhdc1 (MGP_SPRETEiJ_G0018647) #15	Pole2 (MGP_SPRETEiJ_G0018646) #16	MGP_SPRETEiJ_G0018645 #17	Dnaaf2 (MGP_SPRETEiJ_G0018644) #18	Mgat2 (MGP_SPRETEiJ_G0018643) #19	Lrr1 (MGP_SPRETEiJ_G0018642) #21	Rps29 (MGP_SPRETEiJ_G0018641) #22	Mdga2 (MGP_SPRETEiJ_G0018640) #23	Rpl10l (MGP_SPRETEiJ_G0018639) #24	MGP_SPRETEiJ_G0018638	Mis18bp1 (MGP_SPRETEiJ_G0018637) #25	Fancm (MGP_SPRETEiJ_G0018636) #26	Fkbp3 (MGP_SPRETEiJ_G0018635) #27	Prpf39 (MGP_SPRETEiJ_G0018634) #28	Togaram1 (MGP_SPRETEiJ_G0018633) #29	Klhl28 (MGP_SPRETEiJ_G0018632) #30	Gm527 (MGP_SPRETEiJ_G0018631) #31	Fscb (MGP_SPRETEiJ_G0018630) #32	MGP_SPRETEiJ_G0018629	Lrfn5 (MGP_SPRETEiJ_G0018628) #33	Fbxo33 (MGP_SPRETEiJ_G0018627) #34	MGP_SPRETEiJ_G0018626 #35
spretus	MODERN SPECIES	4	Glrx (MGP_SPRETEiJ_G0019612)	Ell2 (MGP_SPRETEiJ_G0019611)	Pcsk1 (MGP_SPRETEiJ_G0019610)	Cast (MGP_SPRETEiJ_G0019609)	Erap1 (MGP_SPRETEiJ_G0019608)	Zfp72 (MGP_SPRETEiJ_G0019607)	Lrrc14b (MGP_SPRETEiJ_G0019606)	MGP_SPRETEiJ_G0019605	Sdha (MGP_SPRETEiJ_G0019604)	Pdcd6 (MGP_SPRETEiJ_G0019603)	Ahrr (MGP_SPRETEiJ_G0019602)	Exoc3 (MGP_SPRETEiJ_G0019601)	Slc9a3 (MGP_SPRETEiJ_G0019600)	Cep72 (MGP_SPRETEiJ_G0019599)	Tppp (MGP_SPRETEiJ_G0019598)	MGP_SPRETEiJ_G0019597 #22	Zdhhc11 (MGP_SPRETEiJ_G0019596)	Brd9 (MGP_SPRETEiJ_G0019595)	Trip13 (MGP_SPRETEiJ_G0019594)	Nkd2 (MGP_SPRETEiJ_G0019593)	Slc12a7 (MGP_SPRETEiJ_G0019592)	Slc6a19 (MGP_SPRETEiJ_G0019591)	Slc6a18 (MGP_SPRETEiJ_G0019590)	Tert (MGP_SPRETEiJ_G0019589)	Clptm1l (MGP_SPRETEiJ_G0019588)	Slc6a3 (MGP_SPRETEiJ_G0019587)	Lpcat1 (MGP_SPRETEiJ_G0019586)	Mrpl36 (MGP_SPRETEiJ_G0019585)	Ndufs6 (MGP_SPRETEiJ_G0019584)	Irx4 (MGP_SPRETEiJ_G0019583)	Irx2 (MGP_SPRETEiJ_G0019582)
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2796																ENSMSIG00000007061 #22	Cd244a (ENSMSIG00000007075)	Ly9 (ENSMSIG00000007115)	Slamf7 (ENSMSIG00000007231)	Cd48 (ENSMSIG00000007298)	Slamf1 (ENSMSIG00000007332)	ENSMSIG00000007351	Cd84 (ENSMSIG00000007368)	ENSMSIG00000007449	Slamf6 (ENSMSIG00000007456)	Vangl2 (ENSMSIG00000007506)	Nhlh1 (ENSMSIG00000007585)	Ncstn (ENSMSIG00000007600)	Copa (ENSMSIG00000007673)	Pex19 (ENSMSIG00000007845)	Dcaf8 (ENSMSIG00000007890)
Steppe mouse	MODERN SPECIES	3136	Cdkl1 (ENSMSIG00000028792) #7	Dmac2l (ENSMSIG00000028784) #8	L2hgdh (ENSMSIG00000028773) #9	Sos2 (ENSMSIG00000028726) #10	Vcpkmt (ENSMSIG00000028718) #11	ENSMSIG00000028714	Arf6 (ENSMSIG00000028712) #12	Nemf (ENSMSIG00000028656) #13	Klhdc2 (ENSMSIG00000028652) #14	Klhdc1 (ENSMSIG00000028633) #15	Pole2 (ENSMSIG00000028607) #16	Dnaaf2 (ENSMSIG00000028604) #18	Mgat2 (ENSMSIG00000028600) #19	ENSMSIG00000028597 ##20	Lrr1 (ENSMSIG00000028593) #21	ENSMSIG00000028587 #22	ENSMSIG00000028576
Steppe mouse	MODERN SPECIES	3330					Zfp72 (ENSMSIG00000015539)	Lrrc14b (ENSMSIG00000015555)	Ccdc127 (ENSMSIG00000015569)	Sdha (ENSMSIG00000015586)	Pdcd6 (ENSMSIG00000015609)	Ahrr (ENSMSIG00000015635)	Exoc3 (ENSMSIG00000015690)	Slc9a3 (ENSMSIG00000015760)	Cep72 (ENSMSIG00000015901)	Tppp (ENSMSIG00000015921)	Zdhhc11 (ENSMSIG00000015943)	ENSMSIG00000015988 #22	ENSMSIG00000016004	Trip13 (ENSMSIG00000016051)	Nkd2 (ENSMSIG00000016110)	Slc12a7 (ENSMSIG00000016137)	ENSMSIG00000016283	Slc6a19 (ENSMSIG00000016300)	Slc6a18 (ENSMSIG00000016330)	Tert (ENSMSIG00000016999)	Clptm1l (ENSMSIG00000017023)	Slc6a3 (ENSMSIG00000017069)	Lpcat1 (ENSMSIG00000017129)	Mrpl36 (ENSMSIG00000017166)	Ndufs6 (ENSMSIG00000017174)	Irx4 (ENSMSIG00000017201)	Irx2 (ENSMSIG00000017231)
Steppe mouse	MODERN SPECIES	3169									Lmcd1 (ENSMSIG00000027786)	Ssu2 (ENSMSIG00000027771)	ENSMSIG00000027768	Cav3 (ENSMSIG00000027763)	Oxtr (ENSMSIG00000027756)	Rad18 (ENSMSIG00000027593)	Srgap3 (ENSMSIG00000027543)	ENSMSIG00000027539 #22	Thumpd3 (ENSMSIG00000027513)	Setd5 (ENSMSIG00000027396)	Lhfpl4 (ENSMSIG00000027387)	Mtmr14 (ENSMSIG00000027342)	Cpne9 (ENSMSIG00000027293)	Brpf1 (ENSMSIG00000026906)	Ogg1 (ENSMSIG00000026897)	Camk1 (ENSMSIG00000026881)	Tada3 (ENSMSIG00000026832)	Arpc4 (ENSMSIG00000026788)	ENSMSIG00000026760	Ttll3 (ENSMSIG00000026655)	Cidec (ENSMSIG00000026617)	Jagn1 (ENSMSIG00000026610)	Il17re (ENSMSIG00000026416)