Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT01010000228719	ENSGT00730000110872.b	ENSGT00950000182928.B.d.b	ENSGT00390000000312 #7	ENSGT01030000234559.b #12	ENSGT00730000111078 #13	ENSGT00940000159289 #14	ENSGT00390000004404 #15	ENSGT00780000122095 #16	ENSGT00940000159131 #17	ENSGT00940000161095 #18	ENSGT00530000064485 #19	ENSGT00940000154882 #20	ENSGT00940000153304.C #21	ENSGT00940000156200.A #22	ENSGT00940000156600 #23	ENSGT00940000158429 #24	ENSGT00950000183128.B #25	ENSGT00550000074897 #26	ENSGT00390000018077 #27	ENSGT00940000159735 #29	ENSGT00940000157634 #30	ENSGT00940000156273 #31	ENSGT00940000155917 #32	ENSGT00390000005307 #33	ENSGT00940000157311 #34	ENSGT00390000008565.b #35	ENSGT00730000111176 #36	ENSGT00940000160043 #37	ENSGT00940000156826
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000156968	ENSGT01010000228719	ENSGT00730000110872.b	ENSGT00950000182928.B.d.b	ENSGT00390000000312 #7	ENSGT01030000234559.b #12	ENSGT00730000111078 #13	ENSGT00940000159289 #14	ENSGT00390000004404 #15	ENSGT00780000122095 #16	ENSGT00940000159131 #17	ENSGT00940000161095 #18	ENSGT00530000064485 #19	ENSGT00940000154882 #20	ENSGT00940000153304.C #21	ENSGT00940000156200.A #22	ENSGT00940000156600 #23	ENSGT00940000158429 #24	ENSGT00950000183128.B.z #25	ENSGT00550000074897 #26	ENSGT00390000018077 #27	ENSGT00940000159735 #29	ENSGT00940000157634 #30	ENSGT00940000156273 #31	ENSGT00940000155917 #32	ENSGT00390000005307 #33	ENSGT00940000157311 #34	ENSGT00390000008565.b #35	ENSGT00730000111176 #36	ENSGT00940000160043 #37	ENSGT00940000156826.r
Eurasian red squirrel	MODERN SPECIES		CTH (ENSSVLG00005017161) #7	ENSSVLG00005017591 #8	ENSSVLG00005017607 #9	ENSSVLG00005017661 #10	ENSSVLG00005017682 #11	PTGER3 (ENSSVLG00005017732) #12	ZRANB2 (ENSSVLG00005017892) #13	NEGR1 (ENSSVLG00005017955) #14	LRRIQ3 (ENSSVLG00005018133) #15	FPGT (ENSSVLG00005018290) #16	TNNI3K (ENSSVLG00005018407) #17	LRRC53 (ENSSVLG00005019046) #18	ENSSVLG00005019103 #19	CRYZ (ENSSVLG00005019217) #20	TYW3 (ENSSVLG00005019387) #21	LHX8 (ENSSVLG00005019479) #22	SLC44A5 (ENSSVLG00005019739) #23	ACADM (ENSSVLG00005020244) #24	RABGGTB (ENSSVLG00005020498) #25	MSH4 (ENSSVLG00005020643) #26	ASB17 (ENSSVLG00005020808) #27	ENSSVLG00005020843 #28	ST6GALNAC3 (ENSSVLG00005020906) #29	ST6GALNAC5 (ENSSVLG00005020967) #30	PIGK (ENSSVLG00005021025) #31	AK5 (ENSSVLG00005021163) #32	ZZZ3 (ENSSVLG00005021295) #33	USP33 (ENSSVLG00005021486) #34	MIGA1 (ENSSVLG00005021690) #35	NEXN (ENSSVLG00005021783) #36	FUBP1 (ENSSVLG00005021850) #37
Marmotini	ANCESTRAL SPECIES		ENSGT00940000156262	ENSGT00940000156968	ENSGT00730000110872.b	ENSGT00950000182928.B.d.b	ENSGT00390000000312 #7	ENSGT01030000234559.b #12	ENSGT00730000111078.w.a #13	ENSGT00940000159289 #14	ENSGT00390000004404 #15	ENSGT00780000122095 #16	ENSGT00940000159131 #17	ENSGT00940000161095 #18	ENSGT00530000064485 #19	ENSGT00940000154882 #20	ENSGT00940000153304.C #21	ENSGT00940000156200.A #22	ENSGT00940000156600 #23	ENSGT00940000158429 #24	ENSGT00950000183128.B.z.a #25	ENSGT00550000074897 #26	ENSGT00390000018077 #27	ENSGT00940000159735 #29	ENSGT00940000157634 #30	ENSGT00940000156273 #31	ENSGT00940000155917 #32	ENSGT00390000005307 #33	ENSGT00940000157311 #34	ENSGT00390000008565.b #35	ENSGT00730000111176 #36	ENSGT00940000160043 #37	ENSGT00940000156826.r
Marmotini_b	ANCESTRAL SPECIES	105	ENSGT00940000156968	ENSGT00730000110872.b	ENSGT00950000182928.B.d.b	ENSGT00940000154222.d.b.d.b.n	ENSGT00390000000312 #7	ENSGT01030000234559.b #12	ENSGT00730000111078.w.a #13	ENSGT00940000159289 #14	ENSGT00390000004404 #15	ENSGT00780000122095 #16	ENSGT00940000159131 #17	ENSGT00940000161095 #18	ENSGT00530000064485 #19	ENSGT00940000154882 #20	ENSGT00940000153304.C #21	ENSGT00940000156200.A #22	ENSGT00940000156600 #23	ENSGT00940000158429 #24	ENSGT00950000183128.B.z.a #25	ENSGT00550000074897 #26	ENSGT00390000018077 #27	ENSGT00940000159735 #29	ENSGT00940000157634 #30	ENSGT00940000156273 #31	ENSGT00940000155917 #32	ENSGT00390000005307 #33	ENSGT00940000157311 #34	ENSGT00390000008565.b #35	ENSGT00730000111176 #36	ENSGT00940000160043 #37	ENSGT00940000156826.r
Squirrel	MODERN SPECIES	171									ENSSTOG00000016460 #15	FPGT (ENSSTOG00000019867) #16	TNNI3K (ENSSTOG00000008323) #17	ENSSTOG00000031204 #18	ERICH3 (ENSSTOG00000027579) #19	CRYZ (ENSSTOG00000005199) #20	TYW3 (ENSSTOG00000028816) #21	LHX8 (ENSSTOG00000023898) #22	SLC44A5 (ENSSTOG00000006287) #23	ENSSTOG00000020981	ENSSTOG00000006336	ENSSTOG00000021824 #25	MSH4 (ENSSTOG00000016243) #26	ASB17 (ENSSTOG00000016248) #27	ST6GALNAC3 (ENSSTOG00000015683) #29	ST6GALNAC5 (ENSSTOG00000015222) #30	PIGK (ENSSTOG00000015226) #31	AK5 (ENSSTOG00000016450) #32	ZZZ3 (ENSSTOG00000016454) #33	USP33 (ENSSTOG00000014241) #34	MIGA1 (ENSSTOG00000004076) #35	NEXN (ENSSTOG00000014300) #36	FUBP1 (ENSSTOG00000014312) #37
Arctic ground squirrel	MODERN SPECIES	14	SRSF11 (ENSUPAG00010014456)	ANKRD13C (ENSUPAG00010014475)	ENSUPAG00010014512	CTH (ENSUPAG00010014528) #7	ENSUPAG00010014565 #11	ENSUPAG00010014568 #12	ZRANB2 (ENSUPAG00010014577) #13	NEGR1 (ENSUPAG00010014624) #14	ENSUPAG00010014638 #15	FPGT (ENSUPAG00010014645) #16	TNNI3K (ENSUPAG00010014659) #17	ENSUPAG00010014716 #18	ENSUPAG00010014725 #19	CRYZ (ENSUPAG00010014757) #20	TYW3 (ENSUPAG00010014776) #21	LHX8 (ENSUPAG00010014818) #22	SLC44A5 (ENSUPAG00010014841) #23	ACADM (ENSUPAG00010014892) #24	ENSUPAG00010014929 #25	MSH4 (ENSUPAG00010014986) #26	ASB17 (ENSUPAG00010015039) #27	ST6GALNAC3 (ENSUPAG00010015056) #29	ST6GALNAC5 (ENSUPAG00010015077) #30	PIGK (ENSUPAG00010015091) #31	AK5 (ENSUPAG00010015115) #32	ZZZ3 (ENSUPAG00010015144) #33	USP33 (ENSUPAG00010015247) #34	MIGA1 (ENSUPAG00010015305) #35	NEXN (ENSUPAG00010015390) #36	FUBP1 (ENSUPAG00010015473) #37	DNAJB4 (ENSUPAG00010015599)
Alpin marmot	MODERN SPECIES	27	ANKRD13C (ENSMMMG00000000111)	CTH (ENSMMMG00000000175) #7	ENSMMMG00000000219	ENSMMMG00000000236	ENSMMMG00000000250	PTGER3 (ENSMMMG00000000262) #12	ZRANB2 (ENSMMMG00000000288) #13	NEGR1 (ENSMMMG00000000368) #14	ENSMMMG00000000411 #15	FPGT (ENSMMMG00000000423) #16	TNNI3K (ENSMMMG00000000454) #17	ENSMMMG00000000512 #18	ENSMMMG00000000530 #19	CRYZ (ENSMMMG00000000554) #20	TYW3 (ENSMMMG00000000575) #21	LHX8 (ENSMMMG00000000607) #22	ENSMMMG00000000643 #23	ACADM (ENSMMMG00000000664) #24	ENSMMMG00000000695 #25	MSH4 (ENSMMMG00000000736) #26	ASB17 (ENSMMMG00000000815) #27	ST6GALNAC3 (ENSMMMG00000000833) #29	ST6GALNAC5 (ENSMMMG00000000879) #30	PIGK (ENSMMMG00000000954) #31	AK5 (ENSMMMG00000000978) #32	ZZZ3 (ENSMMMG00000001008) #33	USP33 (ENSMMMG00000001079) #34	MIGA1 (ENSMMMG00000001232) #35	NEXN (ENSMMMG00000001383) #36	FUBP1 (ENSMMMG00000001582) #37	DNAJB4 (ENSMMMG00000001741)
Hystricomorpha	ANCESTRAL SPECIES	44	ENSGT00940000156968	ENSGT00730000110872.b	ENSGT00950000182928.B.d.b	ENSGT00390000000312 #7	ENSGT01030000234559.b #12	ENSGT00730000111078 #13	ENSGT00940000159289 #14	ENSGT00390000004404 #15	ENSGT00780000122095 #16	ENSGT00940000159131 #17	ENSGT00940000166371	ENSGT00940000161095 #18	ENSGT00530000064485 #19	ENSGT00940000154882 #20	ENSGT00940000153304.C #21	ENSGT00940000156200.A #22	ENSGT00940000156600 #23	ENSGT00940000158429 #24	ENSGT00950000183128.B #25	ENSGT00550000074897 #26	ENSGT00390000018077 #27	ENSGT00940000159735 #29	ENSGT00940000157634 #30	ENSGT00940000156273 #31	ENSGT00940000155917 #32	ENSGT00390000005307 #33	ENSGT00940000157311 #34	ENSGT00390000008565.b #35	ENSGT00730000111176 #36	ENSGT00940000160043 #37	ENSGT00940000156826
Naked mole-rat female	MODERN SPECIES	10	LRRC40 (ENSHGLG00000005148)	SRSF11 (ENSHGLG00000008682)	ANKRD13C (ENSHGLG00000007705)	ENSHGLG00000037598	CTH (ENSHGLG00000006660) #7	PTGER3 (ENSHGLG00000005622) #12	ZRANB2 (ENSHGLG00000004819) #13	NEGR1 (ENSHGLG00000004482) #14	ENSHGLG00000004255 #15	FPGT (ENSHGLG00000009086) #16	ENSHGLG00000041704	TNNI3K (ENSHGLG00000006354) #17	ERICH3 (ENSHGLG00000042655) #19	CRYZ (ENSHGLG00000004519) #20	TYW3 (ENSHGLG00000046756) #21	LHX8 (ENSHGLG00000004276) #22	SLC44A5 (ENSHGLG00000008408) #23	ACADM (ENSHGLG00000007755) #24	ENSHGLG00000005990 #25	MSH4 (ENSHGLG00000005307) #26	ASB17 (ENSHGLG00000004852) #27	ST6GALNAC3 (ENSHGLG00000004799) #29	ENSHGLG00000034547	ENSHGLG00000045681	ENSHGLG00000034054	ST6GALNAC5 (ENSHGLG00000004749) #30	PIGK (ENSHGLG00000004661) #31	AK5 (ENSHGLG00000008242) #32	ZZZ3 (ENSHGLG00000007618) #33	ENSHGLG00000036275	USP33 (ENSHGLG00000006541) #34
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00950000182976.b.a	ENSGT00940000156262	ENSGT00940000156968	ENSGT00730000110872.b	ENSGT00950000182928.B.d.b	ENSGT00390000000312 #7	ENSGT01030000234559.b #12	ENSGT00730000111078 #13	ENSGT00940000159289 #14	ENSGT00390000004404 #15	ENSGT00780000122095 #16	ENSGT00940000161095 #18	ENSGT00530000064485 #19	ENSGT00940000154882 #20	ENSGT00940000153304.C #21	ENSGT00940000156200.A #22	ENSGT00940000156600 #23	ENSGT00940000158429 #24	ENSGT00950000183128.B #25	ENSGT00550000074897 #26	ENSGT00390000018077 #27	ENSGT00940000159735 #29	ENSGT00940000157634 #30	ENSGT00940000156273 #31	ENSGT00940000155917 #32	ENSGT00390000005307 #33	ENSGT00940000157311 #34	ENSGT00390000008565.b #35	ENSGT00730000111176 #36	ENSGT00940000160043 #37	ENSGT00940000156826
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00950000182976.b.a	ENSGT00940000156262	ENSGT00940000156968	ENSGT00730000110872.b	ENSGT00950000182928.B.d.b	ENSGT00390000000312 #7	ENSGT01030000234559.b #12	ENSGT00730000111078 #13	ENSGT00940000159289 #14	ENSGT00390000004404 #15	ENSGT00780000122095 #16	ENSGT00940000161095 #18	ENSGT00530000064485 #19	ENSGT00940000154882 #20	ENSGT00940000153304.C #21	ENSGT00940000156200.A #22	ENSGT00940000156600 #23	ENSGT00940000158429 #24	ENSGT00950000183128.B #25	ENSGT00550000074897 #26	ENSGT00390000018077 #27	ENSGT00940000159735 #29	ENSGT00940000157634 #30	ENSGT00940000156273 #31	ENSGT00940000155917 #32	ENSGT00390000005307 #33	ENSGT00940000157311 #34	ENSGT00390000008565.b #35	ENSGT00730000111176 #36	ENSGT00940000160043 #37	ENSGT00940000156826
Long-tailed chinchilla	MODERN SPECIES	130	DEPDC1 (ENSCLAG00000006344)	LRRC7 (ENSCLAG00000008949)	LRRC40 (ENSCLAG00000014047)	SRSF11 (ENSCLAG00000013309)	ANKRD13C (ENSCLAG00000011373)	CTH (ENSCLAG00000005393) #7	PTGER3 (ENSCLAG00000005105) #12	ZRANB2 (ENSCLAG00000004404) #13	NEGR1 (ENSCLAG00000007364) #14	LRRIQ3 (ENSCLAG00000006032) #15	FPGT (ENSCLAG00000005973) #16	ENSCLAG00000005943 #18	ERICH3 (ENSCLAG00000005724) #19	CRYZ (ENSCLAG00000004555) #20	TYW3 (ENSCLAG00000004370) #21	LHX8 (ENSCLAG00000004105) #22	SLC44A5 (ENSCLAG00000010286) #23	ACADM (ENSCLAG00000010619) #24	RABGGTB (ENSCLAG00000009298) #25	MSH4 (ENSCLAG00000007368) #26	ASB17 (ENSCLAG00000007188) #27	ST6GALNAC3 (ENSCLAG00000006847) #29	ST6GALNAC5 (ENSCLAG00000006546) #30	PIGK (ENSCLAG00000006276) #31	ENSCLAG00000006246	ENSCLAG00000005643	AK5 (ENSCLAG00000007719) #32	ZZZ3 (ENSCLAG00000006453) #33	USP33 (ENSCLAG00000004816) #34	MIGA1 (ENSCLAG00000004098) #35	NEXN (ENSCLAG00000005059) #36
Degu	MODERN SPECIES	98	ENSODEG00000005510	LRRC7 (ENSODEG00000006670)	LRRC40 (ENSODEG00000005601)	SRSF11 (ENSODEG00000006289)	ANKRD13C (ENSODEG00000005392)	CTH (ENSODEG00000006417) #7	PTGER3 (ENSODEG00000005473) #12	ENSODEG00000006491 #13	NEGR1 (ENSODEG00000005896) #14	ENSODEG00000005870 #15	FPGT (ENSODEG00000006370) #16	ENSODEG00000005954	ENSODEG00000006432 #19	ENSODEG00000006615 #20	TYW3 (ENSODEG00000005361) #21	LHX8 (ENSODEG00000005902) #22	SLC44A5 (ENSODEG00000005408) #23
Guinea pig	MODERN SPECIES	2	DEPDC1 (ENSCPOG00000013839)	ENSCPOG00000024331	LRRC7 (ENSCPOG00000009529)	LRRC40 (ENSCPOG00000009536)	SRSF11 (ENSCPOG00000009554)	ANKRD13C (ENSCPOG00000009559)	CTH (ENSCPOG00000020205) #7	PTGER3 (ENSCPOG00000002783) #12	ZRANB2 (ENSCPOG00000007829) #13	NEGR1 (ENSCPOG00000004501) #14	ENSCPOG00000012014 #15	FPGT (ENSCPOG00000006498) #16	ENSCPOG00000038970 #19	CRYZ (ENSCPOG00000006521) #20	ENSCPOG00000034855	LHX8 (ENSCPOG00000000893) #22	SLC44A5 (ENSCPOG00000000895) #23	ACADM (ENSCPOG00000011134) #24	RABGGTB (ENSCPOG00000000664) #25	MSH4 (ENSCPOG00000001103) #26	ASB17 (ENSCPOG00000011485) #27	ST6GALNAC3 (ENSCPOG00000030630) #29	ST6GALNAC5 (ENSCPOG00000011868) #30	PIGK (ENSCPOG00000011874) #31	AK5 (ENSCPOG00000003133) #32	ZZZ3 (ENSCPOG00000031187) #33	USP33 (ENSCPOG00000003926) #34	MIGA1 (ENSCPOG00000012285) #35	NEXN (ENSCPOG00000002750) #36	FUBP1 (ENSCPOG00000002757) #37	DNAJB4 (ENSCPOG00000010555)