Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00510000049735 #7	ENSGT00940000158799 #8	ENSGT00940000153173.b.b #9	ENSGT00940000154994.b	ENSGT00940000157202 #10	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183	ENSGT00390000014792 #23	ENSGT00390000015789.c.a.b ##24	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b ##28	ENSGT00940000154602.a #28	ENSGT00940000162894	ENSGT00940000155258.t	ENSGT00940000154403.a.a ##27	ENSGT00940000154403.a.b #29	ENSGT00940000161311	ENSGT00940000161787 #30	ENSGT00940000161991 #31	ENSGT00940000163841
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000154971	ENSGT00510000049735 #7	ENSGT00940000158799 #8	ENSGT00940000153173.b.b #9	ENSGT00940000157202 #10	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00390000014792 #23	ENSGT00390000015789.c.a.b ##24	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b ##28	ENSGT00940000154602.a #28	ENSGT00940000162894	ENSGT00940000155258.t	ENSGT00940000154403.a.a ##27	ENSGT00940000154403.a.b #29	ENSGT00940000161311	ENSGT00940000161787 #30	ENSGT00940000161991 #31	ENSGT00940000163426 #33	ENSGT00940000153980.j.a.a #32
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000032125 #7	KAT2A (ENSHGLG00000014215) #8	DHX58 (ENSHGLG00000011529) #9	ZNF385C (ENSHGLG00000013481) #10	ENSHGLG00000034407 #11	ENSHGLG00000039749 #12	DNAJC7 (ENSHGLG00000016992) #13	CNP (ENSHGLG00000016638) #14	ODAD4 (ENSHGLG00000016605) #15	ACLY (ENSHGLG00000014233) #16	KLHL11 (ENSHGLG00000037770) #17	KLHL10 (ENSHGLG00000018732) #18	NT5C3B (ENSHGLG00000015568) #19	FKBP10 (ENSHGLG00000016119) #20	P3H4 (ENSHGLG00000016255) #21	JUP (ENSHGLG00000019242) #22	GAST (ENSHGLG00000013252) #23	ENSHGLG00000014274 #24	ENSHGLG00000014114 #25	KRT17 (ENSHGLG00000014256) #26	ENSHGLG00000018762 #27	KRT14 (ENSHGLG00000014710) #28	ENSHGLG00000017248 #29	KRT35 (ENSHGLG00000014815) #30	KRT32 (ENSHGLG00000017222) #31	ENSHGLG00000041581 #32	KRT34 (ENSHGLG00000048614) #33	ENSHGLG00000042231 #34	ENSHGLG00000045464 #35	KRTAP29-1 (ENSHGLG00000047368) #36	ENSHGLG00000016026 #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00510000049735 #7	ENSGT00940000158799 #8	ENSGT00940000153173.b.b #9	ENSGT00940000157202 #10	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00390000014792 #23	ENSGT00390000015789.c.a.b ##24	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b ##28	ENSGT00940000154602.a #28	ENSGT00940000162894	ENSGT00940000155258.t	ENSGT00940000154403.a.a ##27	ENSGT00940000154403.a.b #29	ENSGT00940000161311	ENSGT00940000161787 #30	ENSGT00940000161991 #31	ENSGT00940000153980.j.a.a #32	ENSGT00940000163658
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00510000049735 #7	ENSGT00940000158799 #8	ENSGT00940000153173.b.b #9	ENSGT00940000157202 #10	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00390000014792 #23	ENSGT00390000015789.c.a.b ##24	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b ##28	ENSGT00940000154602.a #28	ENSGT00940000162894	ENSGT00940000155258.t	ENSGT00940000154403.a.a ##27	ENSGT00940000154403.a.b #29	ENSGT00940000161311	ENSGT00940000161787 #30	ENSGT00940000161991 #31	ENSGT00940000153980.j.a.a #32	ENSGT00940000163658
Long-tailed chinchilla	MODERN SPECIES	158	KCNH4 (ENSCLAG00000016815)	RAB5C (ENSCLAG00000016650)	KAT2A (ENSCLAG00000015084) #8	DHX58 (ENSCLAG00000013960) #9	ZNF385C (ENSCLAG00000015100) #10	NKIRAS2 (ENSCLAG00000014896) #12	DNAJC7 (ENSCLAG00000015312) #13	CNP (ENSCLAG00000015883) #14	ODAD4 (ENSCLAG00000014476) #15	ACLY (ENSCLAG00000014600) #16	KLHL11 (ENSCLAG00000017003) #17	KLHL10 (ENSCLAG00000017306) #18	NT5C3B (ENSCLAG00000015634) #19	FKBP10 (ENSCLAG00000016960) #20	P3H4 (ENSCLAG00000015645) #21	JUP (ENSCLAG00000015947) #22	GAST (ENSCLAG00000016052) #23	ENSCLAG00000015732 ##24	ENSCLAG00000015351 #25	KRT16 (ENSCLAG00000016344) ##28	KRT9 (ENSCLAG00000016583)	KRT19 (ENSCLAG00000015425)	KRT15 (ENSCLAG00000013658) ##27	ENSCLAG00000015341 #29	ENSCLAG00000016636 #25	ENSCLAG00000017990	KRTAP16-1 (ENSCLAG00000016554)	ENSCLAG00000015082	ENSCLAG00000017906	ENSCLAG00000015077	ENSCLAG00000015152
Degu	MODERN SPECIES	97	RAB5C (ENSODEG00000017920)	HSPB9 (ENSODEG00000018407) #7	KAT2A (ENSODEG00000018011) #8	DHX58 (ENSODEG00000017902) #9	ZNF385C (ENSODEG00000018049) #10	NKIRAS2 (ENSODEG00000017843) #12	DNAJC7 (ENSODEG00000017953) #13	CNP (ENSODEG00000017962) #14	ODAD4 (ENSODEG00000017939) #15	ACLY (ENSODEG00000018143) #16	KLHL11 (ENSODEG00000017875) #17	KLHL10 (ENSODEG00000018015) #18	NT5C3B (ENSODEG00000018081) #19	FKBP10 (ENSODEG00000017908) #20	P3H4 (ENSODEG00000017979) #21	JUP (ENSODEG00000017964) #22	GAST (ENSODEG00000017853) #23	EIF1 (ENSODEG00000018101) ##24	ENSODEG00000017881 #25	KRT17 (ENSODEG00000017862) #26	KRT16 (ENSODEG00000017857) ##28	KRT14 (ENSODEG00000017873) #28	KRT9 (ENSODEG00000017935)	KRT19 (ENSODEG00000017884)	KRT15 (ENSODEG00000017969) ##27	ENSODEG00000017822 #29	KRT36 (ENSODEG00000017942)	KRT35 (ENSODEG00000017892) #30	KRT32 (ENSODEG00000017895) #31	ENSODEG00000017837 #32	ENSODEG00000017841 #32
Guinea pig	MODERN SPECIES	53	RAB5C (ENSCPOG00000011190)	HSPB9 (ENSCPOG00000026480) #7	KAT2A (ENSCPOG00000040409) #8	DHX58 (ENSCPOG00000023721) #9	ZNF385C (ENSCPOG00000006417) #10	NKIRAS2 (ENSCPOG00000037805) #12	DNAJC7 (ENSCPOG00000023384) #13	CNP (ENSCPOG00000020940) #14	ODAD4 (ENSCPOG00000023846) #15	ACLY (ENSCPOG00000010813) #16	KLHL11 (ENSCPOG00000021621) #17	KLHL10 (ENSCPOG00000002818) #18	NT5C3B (ENSCPOG00000027400) #19	FKBP10 (ENSCPOG00000020998) #20	P3H4 (ENSCPOG00000026262) #21	JUP (ENSCPOG00000003295) #22	GAST (ENSCPOG00000009853) #23	ENSCPOG00000030441 ##24	KRT9 (ENSCPOG00000033124)	KRT19 (ENSCPOG00000035147)	KRT14 (ENSCPOG00000006839) #28	ENSCPOG00000034373 #29	KRT36 (ENSCPOG00000032028)	KRT35 (ENSCPOG00000030708) #30	ENSCPOG00000038800 #32	ENSCPOG00000032896 #32	ENSCPOG00000032218 #32	ENSCPOG00000039793 #32	ENSCPOG00000025665	KRTAP16-1 (ENSCPOG00000020936)	ENSCPOG00000032008
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00510000049735 #7	ENSGT00940000158799 #8	ENSGT00940000153173.b.b #9	ENSGT00940000154994.b	ENSGT00940000157202 #10	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183	ENSGT00390000014792 #23	ENSGT00390000015789.c.a.b ##24	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b ##28	ENSGT00940000154602.a #28	ENSGT00940000162894	ENSGT00940000155258.t	ENSGT00940000154403.a.a ##27	ENSGT00950000183311	ENSGT00940000154403.a.b #29	ENSGT00940000161311	ENSGT00940000161787 #30	ENSGT00940000161991 #31
Marmotini	ANCESTRAL SPECIES	8	ENSGT00510000049735 #7	ENSGT00940000158799 #8	ENSGT00940000153173.b.b #9	ENSGT00940000154994.b	ENSGT00940000157202 #10	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183	ENSGT00390000014792 #23	ENSGT00390000015789.c.a.b ##24	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b ##28	ENSGT00940000154602.a #28	ENSGT00940000162894	ENSGT00940000155258.t	ENSGT00940000154403.a.a ##27	ENSGT00940000154403.a.b #29	ENSGT00940000161311	ENSGT00940000161787 #30	ENSGT00940000161991 #31	ENSGT00940000153980.j.a.b.b.c.a ##32
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00510000049735 #7	ENSGT00940000158799 #8	ENSGT00940000153173.b.b #9	ENSGT00940000154994.b	ENSGT00940000157202 #10	ENSGT00940000157943.b.i #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183	ENSGT00390000014792 #23	ENSGT00390000015789.c.a.b ##24	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b ##28	ENSGT00940000154602.a #28	ENSGT00940000162894	ENSGT00940000155258.t	ENSGT00940000154403.a.a ##27	ENSGT00940000154403.a.b #29	ENSGT00940000161311	ENSGT00940000161787 #30	ENSGT00940000161991 #31	ENSGT00940000153980.j.a.b.b.c.a ##32
Arctic ground squirrel	MODERN SPECIES	46	HSPB9 (ENSUPAG00010009527) #7	KAT2A (ENSUPAG00010009504) #8	DHX58 (ENSUPAG00010009486) #9	C17orf113 (ENSUPAG00010009476)	ZNF385C (ENSUPAG00010009440) #10	NKIRAS2 (ENSUPAG00010009426) #12	DNAJC7 (ENSUPAG00010009401) #13	CNP (ENSUPAG00010009395) #14	ODAD4 (ENSUPAG00010009389) #15	ACLY (ENSUPAG00010009305) #16	KLHL11 (ENSUPAG00010009300) #17	KLHL10 (ENSUPAG00010009288) #18	NT5C3B (ENSUPAG00010009269) #19	FKBP10 (ENSUPAG00010009227) #20	P3H4 (ENSUPAG00010009210) #21	JUP (ENSUPAG00010009167) #22	HAP1 (ENSUPAG00010009150)	GAST (ENSUPAG00010009145) #23	ENSUPAG00010009142 ##24	ENSUPAG00010009125 #25	KRT17 (ENSUPAG00010009109) #26	KRT16 (ENSUPAG00010009069) ##28	KRT14 (ENSUPAG00010009018) #28	KRT9 (ENSUPAG00010009000)	KRT19 (ENSUPAG00010008984)	KRT15 (ENSUPAG00010008970) ##27	ENSUPAG00010008946 #29	KRT36 (ENSUPAG00010008919)	KRT35 (ENSUPAG00010008898) #30	KRT32 (ENSUPAG00010008877) #31	ENSUPAG00010008855 ##32
Squirrel	MODERN SPECIES	90	HSPB9 (ENSSTOG00000006602) #7	RAB5C (ENSSTOG00000006620)	KAT2A (ENSSTOG00000006556) #8	DHX58 (ENSSTOG00000006524) #9	ZNF385C (ENSSTOG00000020287) #10	ENSSTOG00000006159 #12	DNAJC7 (ENSSTOG00000006122) #13	CNP (ENSSTOG00000006116) #14	ODAD4 (ENSSTOG00000006075) #15	ACLY (ENSSTOG00000006029) #16	KLHL11 (ENSSTOG00000026300) #17	KLHL10 (ENSSTOG00000005983) #18	NT5C3B (ENSSTOG00000005969) #19	FKBP10 (ENSSTOG00000005956) #20	P3H4 (ENSSTOG00000028974) #21	JUP (ENSSTOG00000005910) #22	HAP1 (ENSSTOG00000020475)	GAST (ENSSTOG00000005906) #23	EIF1 (ENSSTOG00000002719) ##24	ENSSTOG00000024700 #25	KRT16 (ENSSTOG00000014410) ##28	KRT19 (ENSSTOG00000014403)	KRT15 (ENSSTOG00000014415) ##27	ENSSTOG00000014393 #29	KRT36 (ENSSTOG00000014383)	KRT35 (ENSSTOG00000034016) #30	KRT32 (ENSSTOG00000014374) #31	ENSSTOG00000034013 ##32	ENSSTOG00000013178 #32	ENSSTOG00000033523 ##32	ENSSTOG00000013195 ##32
Alpin marmot	MODERN SPECIES	42	KCNH4 (ENSMMMG00000006041)	RAB5C (ENSMMMG00000006088)	KAT2A (ENSMMMG00000006120) #8	DHX58 (ENSMMMG00000006156) #9	ZNF385C (ENSMMMG00000006176) #10	ENSMMMG00000006193 #12	DNAJC7 (ENSMMMG00000006215) #13	CNP (ENSMMMG00000006240) #14	ENSMMMG00000006244 #15	ENSMMMG00000006252 #15	ACLY (ENSMMMG00000006262) #16	KLHL11 (ENSMMMG00000006432) #17	KLHL10 (ENSMMMG00000006440) #18	NT5C3B (ENSMMMG00000006451) #19	FKBP10 (ENSMMMG00000006462) #20	JUP (ENSMMMG00000006521) #22	HAP1 (ENSMMMG00000006582)	GAST (ENSMMMG00000006600) #23	ENSMMMG00000006606 ##24	ENSMMMG00000006617 #25	KRT17 (ENSMMMG00000006626) #26	KRT16 (ENSMMMG00000006635) ##28	KRT14 (ENSMMMG00000006660) #28	KRT9 (ENSMMMG00000006665)	KRT19 (ENSMMMG00000006685)	KRT15 (ENSMMMG00000006700) ##27	ENSMMMG00000006714 #29	KRT36 (ENSMMMG00000006729)	KRT35 (ENSMMMG00000006741) #30	KRT32 (ENSMMMG00000006755) #31	ENSMMMG00000006764 ##32
Eurasian red squirrel	MODERN SPECIES	12	HSPB9 (ENSSVLG00005000293) #7	KAT2A (ENSSVLG00005000319) #8	DHX58 (ENSSVLG00005000354) #9	ZNF385C (ENSSVLG00005000419) #10	C17orf113 (ENSSVLG00005000459)	ENSSVLG00005000476 #12	ENSSVLG00005000498 #13	CNP (ENSSVLG00005000524) #14	ODAD4 (ENSSVLG00005000556) #15	ACLY (ENSSVLG00005000630) #16	KLHL11 (ENSSVLG00005000699) #17	KLHL10 (ENSSVLG00005000723) #18	NT5C3B (ENSSVLG00005000754) #19	FKBP10 (ENSSVLG00005000785) #20	P3H4 (ENSSVLG00005000841) #21	JUP (ENSSVLG00005000914) #22	ENSSVLG00005001006 #21	ENSSVLG00005001022	HAP1 (ENSSVLG00005001065)	ENSSVLG00005001138	GAST (ENSSVLG00005001171) #23	EIF1 (ENSSVLG00005001188) ##24	ENSSVLG00005001226 #25	KRT17 (ENSSVLG00005001282) #26	KRT16 (ENSSVLG00005001321) ##28	KRT14 (ENSSVLG00005001357) #28	ENSSVLG00005001389	KRT19 (ENSSVLG00005001412)	KRT15 (ENSSVLG00005001448) ##27	KRT13 (ENSSVLG00005001499)	KRT36 (ENSSVLG00005001573)