Murinae	ANCESTRAL SPECIES	6	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b #27	ENSGT00940000154602.a #28	ENSGT00940000162894 #29	ENSGT00940000155258.t #30	ENSGT00940000154403.a.a #31	ENSGT00940000154403.a.b #32	ENSGT00940000161311 #33	ENSGT00940000161787 #34	ENSGT00940000161991 #35	ENSGT00940000153980.j.a.b.a.b #36
Mus	ANCESTRAL SPECIES	2	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b #27	ENSGT00940000154602.a #28	ENSGT00940000162894 #29	ENSGT00940000155258.t #30	ENSGT00940000154403.a.a #31	ENSGT00940000154403.a.b #32	ENSGT00940000161311 #33	ENSGT00940000161787 #34	ENSGT00940000161991 #35	ENSGT00940000153980.j.a.b.a.b #36
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b #27	ENSGT00940000154602.a #28	ENSGT00940000162894 #29	ENSGT00940000155258.t #30	ENSGT00940000154403.a.a #31	ENSGT00940000154403.a.b #32	ENSGT00940000161311 #33	ENSGT00940000161787 #34	ENSGT00940000161991 #35	ENSGT00940000153980.j.a.b.a.b #36
Ryukyu mouse	MODERN SPECIES	2	Rab5c (MGP_CAROLIEiJ_G0017184) #7	Hspb9 (MGP_CAROLIEiJ_G0017183) #8	Kat2a (MGP_CAROLIEiJ_G0017182) #9	Dhx58 (MGP_CAROLIEiJ_G0017181) #10	Zfp385c (MGP_CAROLIEiJ_G0017180) #11	Nkiras2 (MGP_CAROLIEiJ_G0017179) #12	Dnajc7 (MGP_CAROLIEiJ_G0017178) #13	Cnp (MGP_CAROLIEiJ_G0017177) #14	Odad4 (MGP_CAROLIEiJ_G0017176) #15	Acly (MGP_CAROLIEiJ_G0017175) #16	Klhl11 (MGP_CAROLIEiJ_G0017174) #17	Klhl10 (MGP_CAROLIEiJ_G0017173) #18	Nt5c3b (MGP_CAROLIEiJ_G0017172) #19	Fkbp10 (MGP_CAROLIEiJ_G0017171) #20	P3h4 (MGP_CAROLIEiJ_G0017170) #21	Jup (MGP_CAROLIEiJ_G0017169) #22	Hap1 (MGP_CAROLIEiJ_G0017168) #23	Gast (MGP_CAROLIEiJ_G0017167) #24	Krt42 (MGP_CAROLIEiJ_G0017166) #25	Krt17 (MGP_CAROLIEiJ_G0017165) #26	MGP_CAROLIEiJ_G0017164 #27	Krt14 (MGP_CAROLIEiJ_G0017163) #28	Krt9 (MGP_CAROLIEiJ_G0017162) #29	Krt19 (MGP_CAROLIEiJ_G0017161) #30	Krt15 (MGP_CAROLIEiJ_G0017160) #31	Krt13 (MGP_CAROLIEiJ_G0017159) #32	Krt36 (MGP_CAROLIEiJ_G0017158) #33	Krt35 (MGP_CAROLIEiJ_G0017157) #34	Krt32 (MGP_CAROLIEiJ_G0017156) #35	Krt31 (MGP_CAROLIEiJ_G0017155) #36	Krt34 (MGP_CAROLIEiJ_G0017154) #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b #27	ENSGT00940000154602.a #28	ENSGT00940000162894 #29	ENSGT00940000155258.t #30	ENSGT00940000154403.a.a #31	ENSGT00940000154403.a.b #32	ENSGT00940000161311 #33	ENSGT00940000161787 #34	ENSGT00940000161991 #35	ENSGT00940000153980.j.a.b.a.b #36
Mouse	MODERN SPECIES	2	Rab5c (ENSMUSG00000019173) #7	Hspb9 (ENSMUSG00000017832) #8	Kat2a (ENSMUSG00000020918) #9	Dhx58 (ENSMUSG00000017830) #10	Zfp385c (ENSMUSG00000014198) #11	Nkiras2 (ENSMUSG00000017837) #12	Dnajc7 (ENSMUSG00000014195) #13	Cnp (ENSMUSG00000006782) #14	Odad4 (ENSMUSG00000006784) #15	Acly (ENSMUSG00000020917) #16	Klhl11 (ENSMUSG00000048732) #17	Klhl10 (ENSMUSG00000001558) #18	Nt5c3b (ENSMUSG00000017176) #19	Fkbp10 (ENSMUSG00000001555) #20	P3h4 (ENSMUSG00000006931) #21	Jup (ENSMUSG00000001552) #22	Hap1 (ENSMUSG00000006930) #23	Gast (ENSMUSG00000017165) #24	Eif1 (ENSMUSG00000035530)	Krt42 (ENSMUSG00000053654) #25	Krt17 (ENSMUSG00000035557) #26	Krt16 (ENSMUSG00000053797) #27	Krt14 (ENSMUSG00000045545) #28	Krt9 (ENSMUSG00000051617) #29	Krt19 (ENSMUSG00000020911) #30	Krt15 (ENSMUSG00000054146) #31	Krt13 (ENSMUSG00000044041) #32	Krt36 (ENSMUSG00000020916) #33	Krt35 (ENSMUSG00000048013) #34	Krt32 (ENSMUSG00000046095) #35	Krt31 (ENSMUSG00000048981) #36
Mus_C	ANCESTRAL SPECIES	21	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a	ENSGT00940000163247 #25	ENSGT00940000160681.C #26	ENSGT00940000154602.b.c #27	ENSGT00940000154602.a #28	ENSGT00940000162894 #29	ENSGT00940000155258.t #30	ENSGT00940000154403.a.a #31	ENSGT00940000154403.a.b #32	ENSGT00940000161311 #33	ENSGT00940000161787 #34	ENSGT00940000161991 #35	ENSGT00940000153980.j.a.b.a.b #36
Steppe mouse	MODERN SPECIES	2508						ENSMSIG00000000293 #13	ENSMSIG00000000383	Cnp (ENSMSIG00000000414) #14	Odad4 (ENSMSIG00000000453) #15	Acly (ENSMSIG00000000565) #16	Klhl11 (ENSMSIG00000000730) #17	Klhl10 (ENSMSIG00000000753) #18	Nt5c3b (ENSMSIG00000000807) #19	Fkbp10 (ENSMSIG00000000865) #20	P3h4 (ENSMSIG00000000942) #21	Jup (ENSMSIG00000001000) #22	Hap1 (ENSMSIG00000001037) #23	Gast (ENSMSIG00000001061) #24	ENSMSIG00000001075	Krt42 (ENSMSIG00000001103) #25	Krt17 (ENSMSIG00000001129) #26	ENSMSIG00000001147 #27	ENSMSIG00000001184 #27	Krt14 (ENSMSIG00000001257) #28	ENSMSIG00000001354 #29	Krt15 (ENSMSIG00000001420) #31	Krt13 (ENSMSIG00000001442) #32	Krt36 (ENSMSIG00000001468) #33	Krt35 (ENSMSIG00000001493) #34	Krt32 (ENSMSIG00000001532) #35
spretus	MODERN SPECIES	2	Rab5c (MGP_SPRETEiJ_G0018027) #7	Hspb9 (MGP_SPRETEiJ_G0018026) #8	Kat2a (MGP_SPRETEiJ_G0018025) #9	Dhx58 (MGP_SPRETEiJ_G0018024) #10	Zfp385c (MGP_SPRETEiJ_G0018023) #11	Nkiras2 (MGP_SPRETEiJ_G0018022) #12	Dnajc7 (MGP_SPRETEiJ_G0018021) #13	Cnp (MGP_SPRETEiJ_G0018020) #14	Odad4 (MGP_SPRETEiJ_G0018019) #15	Acly (MGP_SPRETEiJ_G0018018) #16	Klhl11 (MGP_SPRETEiJ_G0018017) #17	Klhl10 (MGP_SPRETEiJ_G0018016) #18	Nt5c3b (MGP_SPRETEiJ_G0018015) #19	Fkbp10 (MGP_SPRETEiJ_G0018014) #20	P3h4 (MGP_SPRETEiJ_G0018013) #21	Jup (MGP_SPRETEiJ_G0018012) #22	Hap1 (MGP_SPRETEiJ_G0018011) #23	Gast (MGP_SPRETEiJ_G0018010) #24	MGP_SPRETEiJ_G0018009	Krt42 (MGP_SPRETEiJ_G0018008) #25	Krt17 (MGP_SPRETEiJ_G0018007) #26	MGP_SPRETEiJ_G0018006 #27	Krt14 (MGP_SPRETEiJ_G0018005) #28	Krt9 (MGP_SPRETEiJ_G0018004) #29	Krt19 (MGP_SPRETEiJ_G0018003) #30	Krt15 (MGP_SPRETEiJ_G0018002) #31	Krt13 (MGP_SPRETEiJ_G0018001) #32	Krt36 (MGP_SPRETEiJ_G0018000) #33	Krt35 (MGP_SPRETEiJ_G0017999) #34	Krt32 (MGP_SPRETEiJ_G0017998) #35	Krt31 (MGP_SPRETEiJ_G0017997) #36
Shrew mouse	MODERN SPECIES	5	Rab5c (MGP_PahariEiJ_G0018314) #7	Hspb9 (MGP_PahariEiJ_G0018313) #8	Kat2a (MGP_PahariEiJ_G0018312) #9	Dhx58 (MGP_PahariEiJ_G0018311) #10	Zfp385c (MGP_PahariEiJ_G0018310) #11	Nkiras2 (MGP_PahariEiJ_G0018309) #12	Dnajc7 (MGP_PahariEiJ_G0018308) #13	Cnp (MGP_PahariEiJ_G0018307) #14	MGP_PahariEiJ_G0018306 #15	Acly (MGP_PahariEiJ_G0018305) #16	Klhl11 (MGP_PahariEiJ_G0018304) #17	Klhl10 (MGP_PahariEiJ_G0018303) #18	Nt5c3b (MGP_PahariEiJ_G0018302) #19	Fkbp10 (MGP_PahariEiJ_G0018301) #20	P3h4 (MGP_PahariEiJ_G0018300) #21	Jup (MGP_PahariEiJ_G0018299) #22	Hap1 (MGP_PahariEiJ_G0018298) #23	Gast (MGP_PahariEiJ_G0018297) #24	MGP_PahariEiJ_G0018296	Krt42 (MGP_PahariEiJ_G0018295) #25	Krt17 (MGP_PahariEiJ_G0018294) #26	MGP_PahariEiJ_G0018293 #27	Krt14 (MGP_PahariEiJ_G0018292) #28	MGP_PahariEiJ_G0018291 #29	Krt19 (MGP_PahariEiJ_G0018290) #30	Krt15 (MGP_PahariEiJ_G0018289) #31	Krt13 (MGP_PahariEiJ_G0018288) #32	Krt36 (MGP_PahariEiJ_G0018287) #33	Krt35 (MGP_PahariEiJ_G0018286) #34	Krt32 (MGP_PahariEiJ_G0018285) #35	Krt31 (MGP_PahariEiJ_G0018284) #36
Rat	MODERN SPECIES	1	Rab5c (ENSRNOG00000018568) #7	Hspb9 (ENSRNOG00000036819) #8	Kat2a (ENSRNOG00000018364) #9	Dhx58 (ENSRNOG00000018247) #10	Zfp385c (ENSRNOG00000025370) #11	Nkiras2 (ENSRNOG00000018095) #12	Dnajc7 (ENSRNOG00000017781) #13	Cnp (ENSRNOG00000017496) #14	Odad4 (ENSRNOG00000017473) #15	Acly (ENSRNOG00000016924) #16	Klhl11 (ENSRNOG00000016921) #17	Klhl10 (ENSRNOG00000016749) #18	Nt5c3b (ENSRNOG00000016475) #19	Fkbp10 (ENSRNOG00000015941) #20	P3h4 (ENSRNOG00000015787) #21	Jup (ENSRNOG00000015380) #22	Hap1 (ENSRNOG00000014819) #23	Gast (ENSRNOG00000014740) #24	Eif1 (ENSRNOG00000033765)	Krt42 (ENSRNOG00000034087) #25	Krt17 (ENSRNOG00000026371) #26	Krt9 (ENSRNOG00000014370) #29	Krt16 (ENSRNOG00000003899) #27	Krt13 (ENSRNOG00000014070) #32	Krt36 (ENSRNOG00000031805) #33	Krt35 (ENSRNOG00000013754) #34	Krt32 (ENSRNOG00000013611) #35	Krt31 (ENSRNOG00000030344) #36	Krt34 (ENSRNOG00000051302) #37	Krt33b (ENSRNOG00000068212) ##36	Krt33a (ENSRNOG00000062912) ##36