Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000154971	ENSGT00510000049735	ENSGT00940000158799	ENSGT00940000153173.b.b	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338 #12	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #29	ENSGT00940000154602.a #30	ENSGT00940000162894 #31	ENSGT00940000155258.t	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000154971	ENSGT00510000049735	ENSGT00940000158799	ENSGT00940000153173.b.b	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338 #12	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #29	ENSGT00940000154602.a #30	ENSGT00940000162894 #31	ENSGT00940000155258.t	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b
Mus_C	ANCESTRAL SPECIES	21	ENSGT00940000154971	ENSGT00510000049735	ENSGT00940000158799	ENSGT00940000153173.b.b	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338 #12	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b.c #29	ENSGT00940000154602.a #30	ENSGT00940000162894 #31	ENSGT00940000155258.t	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b
Steppe mouse	MODERN SPECIES	2508						ENSMSIG00000000293 #12	ENSMSIG00000000383 #13	Cnp (ENSMSIG00000000414) #14	Odad4 (ENSMSIG00000000453) #15	Acly (ENSMSIG00000000565) #16	Klhl11 (ENSMSIG00000000730) #17	Klhl10 (ENSMSIG00000000753) #18	Nt5c3b (ENSMSIG00000000807) #19	Fkbp10 (ENSMSIG00000000865) #20	P3h4 (ENSMSIG00000000942) #21	Jup (ENSMSIG00000001000) #22	Hap1 (ENSMSIG00000001037) #23	Gast (ENSMSIG00000001061) #24	ENSMSIG00000001075 #25	Krt42 (ENSMSIG00000001103) #26	Krt17 (ENSMSIG00000001129) #27	ENSMSIG00000001147 #28	ENSMSIG00000001184 #29	Krt14 (ENSMSIG00000001257) #30	ENSMSIG00000001354 #31	Krt15 (ENSMSIG00000001420) #32	Krt13 (ENSMSIG00000001442) #33	Krt36 (ENSMSIG00000001468) #34	Krt35 (ENSMSIG00000001493) #35	Krt32 (ENSMSIG00000001532) #36
spretus	MODERN SPECIES	2	Rab5c (MGP_SPRETEiJ_G0018027)	Hspb9 (MGP_SPRETEiJ_G0018026)	Kat2a (MGP_SPRETEiJ_G0018025)	Dhx58 (MGP_SPRETEiJ_G0018024)	Zfp385c (MGP_SPRETEiJ_G0018023)	Nkiras2 (MGP_SPRETEiJ_G0018022)	Dnajc7 (MGP_SPRETEiJ_G0018021) #12	Cnp (MGP_SPRETEiJ_G0018020) #14	Odad4 (MGP_SPRETEiJ_G0018019) #15	Acly (MGP_SPRETEiJ_G0018018) #16	Klhl11 (MGP_SPRETEiJ_G0018017) #17	Klhl10 (MGP_SPRETEiJ_G0018016) #18	Nt5c3b (MGP_SPRETEiJ_G0018015) #19	Fkbp10 (MGP_SPRETEiJ_G0018014) #20	P3h4 (MGP_SPRETEiJ_G0018013) #21	Jup (MGP_SPRETEiJ_G0018012) #22	Hap1 (MGP_SPRETEiJ_G0018011) #23	Gast (MGP_SPRETEiJ_G0018010) #24	MGP_SPRETEiJ_G0018009 ##25	Krt42 (MGP_SPRETEiJ_G0018008) #26	Krt17 (MGP_SPRETEiJ_G0018007) #27	MGP_SPRETEiJ_G0018006 #29	Krt14 (MGP_SPRETEiJ_G0018005) #30	Krt9 (MGP_SPRETEiJ_G0018004) #31	Krt19 (MGP_SPRETEiJ_G0018003)	Krt15 (MGP_SPRETEiJ_G0018002) #32	Krt13 (MGP_SPRETEiJ_G0018001) #33	Krt36 (MGP_SPRETEiJ_G0018000) #34	Krt35 (MGP_SPRETEiJ_G0017999) #35	Krt32 (MGP_SPRETEiJ_G0017998) #36	Krt31 (MGP_SPRETEiJ_G0017997)
Mouse	MODERN SPECIES	2	Rab5c (ENSMUSG00000019173)	Hspb9 (ENSMUSG00000017832)	Kat2a (ENSMUSG00000020918)	Dhx58 (ENSMUSG00000017830)	Zfp385c (ENSMUSG00000014198)	Nkiras2 (ENSMUSG00000017837)	Dnajc7 (ENSMUSG00000014195) #12	Cnp (ENSMUSG00000006782) #14	Odad4 (ENSMUSG00000006784) #15	Acly (ENSMUSG00000020917) #16	Klhl11 (ENSMUSG00000048732) #17	Klhl10 (ENSMUSG00000001558) #18	Nt5c3b (ENSMUSG00000017176) #19	Fkbp10 (ENSMUSG00000001555) #20	P3h4 (ENSMUSG00000006931) #21	Jup (ENSMUSG00000001552) #22	Hap1 (ENSMUSG00000006930) #23	Gast (ENSMUSG00000017165) #24	Eif1 (ENSMUSG00000035530) ##25	Krt42 (ENSMUSG00000053654) #26	Krt17 (ENSMUSG00000035557) #27	Krt16 (ENSMUSG00000053797) #29	Krt14 (ENSMUSG00000045545) #30	Krt9 (ENSMUSG00000051617) #31	Krt19 (ENSMUSG00000020911)	Krt15 (ENSMUSG00000054146) #32	Krt13 (ENSMUSG00000044041) #33	Krt36 (ENSMUSG00000020916) #34	Krt35 (ENSMUSG00000048013) #35	Krt32 (ENSMUSG00000046095) #36	Krt31 (ENSMUSG00000048981)
Ryukyu mouse	MODERN SPECIES	2	Rab5c (MGP_CAROLIEiJ_G0017184)	Hspb9 (MGP_CAROLIEiJ_G0017183)	Kat2a (MGP_CAROLIEiJ_G0017182)	Dhx58 (MGP_CAROLIEiJ_G0017181)	Zfp385c (MGP_CAROLIEiJ_G0017180)	Nkiras2 (MGP_CAROLIEiJ_G0017179)	Dnajc7 (MGP_CAROLIEiJ_G0017178) #12	Cnp (MGP_CAROLIEiJ_G0017177) #14	Odad4 (MGP_CAROLIEiJ_G0017176) #15	Acly (MGP_CAROLIEiJ_G0017175) #16	Klhl11 (MGP_CAROLIEiJ_G0017174) #17	Klhl10 (MGP_CAROLIEiJ_G0017173) #18	Nt5c3b (MGP_CAROLIEiJ_G0017172) #19	Fkbp10 (MGP_CAROLIEiJ_G0017171) #20	P3h4 (MGP_CAROLIEiJ_G0017170) #21	Jup (MGP_CAROLIEiJ_G0017169) #22	Hap1 (MGP_CAROLIEiJ_G0017168) #23	Gast (MGP_CAROLIEiJ_G0017167) #24	Krt42 (MGP_CAROLIEiJ_G0017166) #26	Krt17 (MGP_CAROLIEiJ_G0017165) #27	MGP_CAROLIEiJ_G0017164 #29	Krt14 (MGP_CAROLIEiJ_G0017163) #30	Krt9 (MGP_CAROLIEiJ_G0017162) #31	Krt19 (MGP_CAROLIEiJ_G0017161)	Krt15 (MGP_CAROLIEiJ_G0017160) #32	Krt13 (MGP_CAROLIEiJ_G0017159) #33	Krt36 (MGP_CAROLIEiJ_G0017158) #34	Krt35 (MGP_CAROLIEiJ_G0017157) #35	Krt32 (MGP_CAROLIEiJ_G0017156) #36	Krt31 (MGP_CAROLIEiJ_G0017155)	Krt34 (MGP_CAROLIEiJ_G0017154)