Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00940000158043	ENSGT00940000155938	ENSGT00390000018123.a.a	ENSGT00940000160934 #8	ENSGT00530000063759.a #9	ENSGT00440000033589.c #10	ENSGT00950000183170.a #11	ENSGT00940000159096 #12	ENSGT00940000158301 #14	ENSGT00390000012529 #15	ENSGT00390000008576 #16	ENSGT00940000158492 #17	ENSGT00390000014556 #18	ENSGT00940000159811 #19	ENSGT00940000158682 #21	ENSGT00940000154837.f.y.a #22	ENSGT00530000063553.b.b #23	ENSGT00940000159578 #24	ENSGT00950000183118.B #25	ENSGT00390000013367 #26	ENSGT00940000156041 #27	ENSGT00940000154688.b #28	ENSGT00940000159061 #29	ENSGT00390000009505 #30	ENSGT00940000160007 #31	ENSGT00390000007370 #32	ENSGT00390000007315 #33	ENSGT00940000164424	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT01030000234638.b.a.a #35	ENSGT00390000002121 #36
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000158043	ENSGT00940000155938	ENSGT00390000018123.a.a	ENSGT00940000160934 #8	ENSGT00530000063759.a #9	ENSGT00440000033589.c #10	ENSGT00950000183170.a #11	ENSGT00940000159096 #12	ENSGT00940000158301 #14	ENSGT00390000012529 #15	ENSGT00390000008576 #16	ENSGT00940000158492 #17	ENSGT00390000014556 #18	ENSGT00940000159811 #19	ENSGT00940000158682 #21	ENSGT00940000154837.f.y.a #22	ENSGT00530000063553.b.b #23	ENSGT00940000159578 #24	ENSGT00950000183118.B #25	ENSGT00390000013367 #26	ENSGT00940000156041 #27	ENSGT00940000154688.b #28	ENSGT00940000159061 #29	ENSGT00390000009505 #30	ENSGT00940000160007 #31	ENSGT00390000007370 #32	ENSGT00390000007315 #33	ENSGT00940000164424	ENSGT01030000234638.b.a.a #35	ENSGT00390000002121 #36	ENSGT00940000159016 #37
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00940000158043	ENSGT00940000155938	ENSGT00390000018123.a.a	ENSGT00940000160934 #8	ENSGT00530000063759.a #9	ENSGT00440000033589.c #10	ENSGT00950000183170.a #11	ENSGT00940000159096 #12	ENSGT00940000158301 #14	ENSGT00390000012529 #15	ENSGT00390000008576 #16	ENSGT00940000158492 #17	ENSGT00390000014556 #18	ENSGT00940000159811 #19	ENSGT00940000158682 #21	ENSGT00940000154837.f.y.a #22	ENSGT00530000063553.b.b #23	ENSGT00940000159578 #24	ENSGT00950000183118.B #25	ENSGT00390000013367 #26	ENSGT00940000156041 #27	ENSGT00940000154688.b #28	ENSGT00940000159061 #29	ENSGT00390000009505 #30	ENSGT00940000160007 #31	ENSGT00390000007370 #32	ENSGT00390000007315 #33	ENSGT00940000164424	ENSGT01030000234638.b.a.a #35	ENSGT00390000002121 #36	ENSGT00940000159016 #37
Prairie vole	MODERN SPECIES	98	ENSMOCG00000009848 #7	Nod2 (ENSMOCG00000021721) #8	Snx20 (ENSMOCG00000015078) #9	Nkd1 (ENSMOCG00000019054) #10	Brd7 (ENSMOCG00000022495) #11	Adcy7 (ENSMOCG00000000434) #12	ENSMOCG00000016736 #13	Tent4b (ENSMOCG00000013042) #14	Heatr3 (ENSMOCG00000019132) #15	ENSMOCG00000019184 #16	Zfp423 (ENSMOCG00000002689) #17	4933402J07Rik (ENSMOCG00000020575) #18	Cbln1 (ENSMOCG00000003934) #19	ENSMOCG00000017947 #20	N4bp1 (ENSMOCG00000016652) #21	Siah1b (ENSMOCG00000004613) #22	Lonp2 (ENSMOCG00000003841) #23	Abcc12 (ENSMOCG00000001840) #24	Phkb (ENSMOCG00000021928) #25	Itfg1 (ENSMOCG00000012550) #26	Neto2 (ENSMOCG00000000575) #27	ENSMOCG00000006972 #28	Gpt2 (ENSMOCG00000016944) #29	4921524J17Rik (ENSMOCG00000022491) #30	Mylk3 (ENSMOCG00000008937) #31	Orc6 (ENSMOCG00000020756) #32	Vps35 (ENSMOCG00000002997) #33	ENSMOCG00000006321 #34	Man2b1 (ENSMOCG00000019337) #35	Wdr83os (ENSMOCG00000000084) #36	Wdr83 (ENSMOCG00000015572) #37
Northern American deer mouse	MODERN SPECIES	18	Sall1 (ENSPEMG00000012331)	Cyld (ENSPEMG00000011322)	Nod2 (ENSPEMG00000016933) #8	Snx20 (ENSPEMG00000015231) #9	Nkd1 (ENSPEMG00000028031) #10	Brd7 (ENSPEMG00000015843) #11	Adcy7 (ENSPEMG00000018675) #12	Tent4b (ENSPEMG00000029372) #14	Heatr3 (ENSPEMG00000016174) #15	Cnep1r1 (ENSPEMG00000017702) #16	ENSPEMG00000002704	Zfp423 (ENSPEMG00000015523) #17	4933402J07Rik (ENSPEMG00000016843) #18	Cbln1 (ENSPEMG00000029511) #19	N4bp1 (ENSPEMG00000016429) #21	Siah1b (ENSPEMG00000008065) #22	Lonp2 (ENSPEMG00000010377) #23	Abcc12 (ENSPEMG00000015588) #24	Phkb (ENSPEMG00000004503) #25	Itfg1 (ENSPEMG00000013284) #26	Neto2 (ENSPEMG00000014306) #27	Dnaja2 (ENSPEMG00000016348) #28	Gpt2 (ENSPEMG00000008151) #29	4921524J17Rik (ENSPEMG00000025838) #30	Mylk3 (ENSPEMG00000000415) #31	ENSPEMG00000021580	Orc6 (ENSPEMG00000000721) #32	Vps35 (ENSPEMG00000011942) #33	Or7c19 (ENSPEMG00000024814)	ENSPEMG00000025354	ENSPEMG00000026081
Cricetinae	ANCESTRAL SPECIES	16	ENSGT00940000158043	ENSGT00940000155938.s	ENSGT00390000018123.a.a	ENSGT00940000160934 #8	ENSGT00530000063759.a #9	ENSGT00440000033589.c #10	ENSGT00950000183170.a #11	ENSGT00940000159096 #12	ENSGT00940000158301 #14	ENSGT00390000012529 #15	ENSGT00390000008576 #16	ENSGT00940000158492 #17	ENSGT00390000014556 #18	ENSGT00940000159811 #19	ENSGT00940000158682 #21	ENSGT00940000154837.f.y.a #22	ENSGT00530000063553.b.b #23	ENSGT00940000159578 #24	ENSGT00950000183118.B #25	ENSGT00390000013367 #26	ENSGT00940000156041 #27	ENSGT00940000154688.b #28	ENSGT00940000159061 #29	ENSGT00390000009505 #30	ENSGT00940000160007 #31	ENSGT00390000007370 #32	ENSGT00390000007315 #33
Chinese hamster chok1gshd	MODERN SPECIES	112	ENSCGRG00001023314	ENSCGRG00001019423	Cyld (ENSCGRG00001000533)	Nod2 (ENSCGRG00001011531) #8	Snx20 (ENSCGRG00001020312) #9	Nkd1 (ENSCGRG00001011787) #10	Brd7 (ENSCGRG00001003449) #11	Adcy7 (ENSCGRG00001014504) #12	Tent4b (ENSCGRG00001023597) #14	Heatr3 (ENSCGRG00001024755) #15	Cnep1r1 (ENSCGRG00001009199) #16	Zfp423 (ENSCGRG00001023063) #17	4933402J07Rik (ENSCGRG00001021069) #18	Cbln1 (ENSCGRG00001018308) #19	N4bp1 (ENSCGRG00001014095) #21	Siah1b (ENSCGRG00001006463) #22	LONP2 (ENSCGRG00001009685) #23	Abcc12 (ENSCGRG00001017268) #24	Phkb (ENSCGRG00001003257) #25	Itfg1 (ENSCGRG00001016387) #26	Neto2 (ENSCGRG00001019397) #27	Dnaja2 (ENSCGRG00001019174) #28	Gpt2 (ENSCGRG00001022110) #29	4921524J17Rik (ENSCGRG00001019894) #30	Mylk3 (ENSCGRG00001016524) #31	Orc6 (ENSCGRG00001000545) #32	Vps35 (ENSCGRG00001010516) #33
Murinae	ANCESTRAL SPECIES																	ENSGT00940000154837.f.y.a #22
Mus	ANCESTRAL SPECIES	9	ENSGT00510000047168	ENSGT00390000001798	ENSGT00390000006915.c.c.b	ENSGT00390000013608	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000157160	ENSGT00940000160592	ENSGT00390000014405	ENSGT00940000159726	ENSGT00390000008044	ENSGT00940000161172	ENSGT00940000158077	ENSGT00940000160862	ENSGT00940000154837.f.y.a #22	ENSGT00940000156978	ENSGT00940000166817	ENSGT00970000193372.a.a	ENSGT00950000182909.b.a.a.e	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a	ENSGT00530000064238	ENSGT00390000007662	ENSGT00940000155463	ENSGT00940000154748.C	ENSGT00940000158080	ENSGT00950000182963.b.a	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00940000159407
Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000018123.a.a	ENSGT00940000160934 #8	ENSGT00530000063759.a #9	ENSGT00440000033589.c #10	ENSGT00950000183170.a #11	ENSGT00940000159096 #12	ENSGT00940000158301 #14	ENSGT00390000012529 #15	ENSGT00390000008576 #16	ENSGT00940000158492 #17	ENSGT00390000014556 #18	ENSGT00940000159811 #19	ENSGT00940000158682 #21	ENSGT00940000154837.f.y.b ##22	ENSGT00860000136300	ENSGT00940000154837.f.y.a #22	ENSGT00530000063553.b.b #23	ENSGT00940000159578 #24	ENSGT00950000183118.B #25	ENSGT00390000013367 #26	ENSGT00940000156041 #27	ENSGT00940000154688.b #28	ENSGT00940000159061 #29	ENSGT00390000009505 #30	ENSGT00940000160007 #31	ENSGT00390000007370 #32	ENSGT00390000007315 #33	ENSGT00940000164424	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT01030000234638.b.a.a #35	ENSGT00390000002121.i #36
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	17	Cyld (MGP_CAROLIEiJ_G0031361)	Nod2 (MGP_CAROLIEiJ_G0031360) #8	Snx20 (MGP_CAROLIEiJ_G0031359) #9	Nkd1 (MGP_CAROLIEiJ_G0031358) #10	Brd7 (MGP_CAROLIEiJ_G0031357) #11	Adcy7 (MGP_CAROLIEiJ_G0031356) #12	Tent4b (MGP_CAROLIEiJ_G0031355) #14	Heatr3 (MGP_CAROLIEiJ_G0031354) #15	Cnep1r1 (MGP_CAROLIEiJ_G0031353) #16	Zfp423 (MGP_CAROLIEiJ_G0031352) #17	4933402J07Rik (MGP_CAROLIEiJ_G0031351) #18	Cbln1 (MGP_CAROLIEiJ_G0031350) #19	N4bp1 (MGP_CAROLIEiJ_G0031349) #21	MGP_CAROLIEiJ_G0031348	MGP_CAROLIEiJ_G0031347 #22	MGP_CAROLIEiJ_G0031346 #22	Lonp2 (MGP_CAROLIEiJ_G0031345) #23	Abcc12 (MGP_CAROLIEiJ_G0031344) #24	Phkb (MGP_CAROLIEiJ_G0031343) #25	Itfg1 (MGP_CAROLIEiJ_G0031342) #26	Neto2 (MGP_CAROLIEiJ_G0031341) #27	Dnaja2 (MGP_CAROLIEiJ_G0031340) #28	Gpt2 (MGP_CAROLIEiJ_G0031339) #29	4921524J17Rik (MGP_CAROLIEiJ_G0031338) #30	Mylk3 (MGP_CAROLIEiJ_G0031337) #31	Orc6 (MGP_CAROLIEiJ_G0031336) #32	Vps35 (MGP_CAROLIEiJ_G0031335) #33	Or7c19 (MGP_CAROLIEiJ_G0031334)	Zfp791 (MGP_CAROLIEiJ_G0031333)	Man2b1 (MGP_CAROLIEiJ_G0031332) #35	Wdr83os (MGP_CAROLIEiJ_G0031331) #36
Ryukyu mouse	MODERN SPECIES	17	Sall1 (MGP_CAROLIEiJ_G0031362)	Cyld (MGP_CAROLIEiJ_G0031361)	Nod2 (MGP_CAROLIEiJ_G0031360) #8	Snx20 (MGP_CAROLIEiJ_G0031359) #9	Nkd1 (MGP_CAROLIEiJ_G0031358) #10	Brd7 (MGP_CAROLIEiJ_G0031357) #11	Adcy7 (MGP_CAROLIEiJ_G0031356) #12	Tent4b (MGP_CAROLIEiJ_G0031355) #14	Heatr3 (MGP_CAROLIEiJ_G0031354) #15	Cnep1r1 (MGP_CAROLIEiJ_G0031353) #16	Zfp423 (MGP_CAROLIEiJ_G0031352) #17	4933402J07Rik (MGP_CAROLIEiJ_G0031351) #18	Cbln1 (MGP_CAROLIEiJ_G0031350) #19	N4bp1 (MGP_CAROLIEiJ_G0031349) #21	MGP_CAROLIEiJ_G0031348	MGP_CAROLIEiJ_G0031347 #22	MGP_CAROLIEiJ_G0031346 #22	Lonp2 (MGP_CAROLIEiJ_G0031345) #23	Abcc12 (MGP_CAROLIEiJ_G0031344) #24	Phkb (MGP_CAROLIEiJ_G0031343) #25	Itfg1 (MGP_CAROLIEiJ_G0031342) #26	Neto2 (MGP_CAROLIEiJ_G0031341) #27	Dnaja2 (MGP_CAROLIEiJ_G0031340) #28	Gpt2 (MGP_CAROLIEiJ_G0031339) #29	4921524J17Rik (MGP_CAROLIEiJ_G0031338) #30	Mylk3 (MGP_CAROLIEiJ_G0031337) #31	Orc6 (MGP_CAROLIEiJ_G0031336) #32	Vps35 (MGP_CAROLIEiJ_G0031335) #33	Or7c19 (MGP_CAROLIEiJ_G0031334)	Zfp791 (MGP_CAROLIEiJ_G0031333)	Man2b1 (MGP_CAROLIEiJ_G0031332) #35
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000018123.a.a	ENSGT00940000160934 #8	ENSGT00530000063759.a #9	ENSGT00440000033589.c #10	ENSGT00950000183170.a #11	ENSGT00940000159096 #12	ENSGT00940000158301 #14	ENSGT00390000012529 #15	ENSGT00390000008576 #16	ENSGT00940000158492 #17	ENSGT00390000014556 #18	ENSGT00940000159811 #19	ENSGT00940000158682 #21	ENSGT00940000154837.f.y.b ##22	ENSGT00860000136300	ENSGT00940000154837.f.y.a #22	ENSGT00530000063553.b.b #23	ENSGT00940000159578 #24	ENSGT00950000183118.B #25	ENSGT00390000013367 #26	ENSGT00940000156041 #27	ENSGT00940000154688.b #28	ENSGT00940000159061 #29	ENSGT00390000009505 #30	ENSGT00940000160007 #31	ENSGT00390000007370 #32	ENSGT00390000007315 #33	ENSGT00940000164424	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT01030000234638.b.a.a #35	ENSGT00390000002121.i #36
Mouse	MODERN SPECIES	37	Trappc2 (ENSMUSG00000079317)	Ofd1 (ENSMUSG00000040586)	Gpm6b (ENSMUSG00000031342)	Gemin8 (ENSMUSG00000040621)	Glra2 (ENSMUSG00000018589)	Fancb (ENSMUSG00000047757)	Mospd2 (ENSMUSG00000061778)	Asb9 (ENSMUSG00000031384)	Asb11 (ENSMUSG00000031382)	Piga (ENSMUSG00000031381)	Vegfd (ENSMUSG00000031380)	Pir (ENSMUSG00000031379)	Bmx (ENSMUSG00000031377)	Ace2 (ENSMUSG00000015405)	Cltrn (ENSMUSG00000015401)	Siah1b (ENSMUSG00000040749) #22	Car5b (ENSMUSG00000031373)	Zrsr2 (ENSMUSG00000031370)	Ap1s2 (ENSMUSG00000031367)	Rnf138rt1 (ENSMUSG00000083695)	Grpr (ENSMUSG00000031364)	S100g (ENSMUSG00000040808)	Ctps2 (ENSMUSG00000031360)	Syap1 (ENSMUSG00000031357)	Txlng (ENSMUSG00000038344)	Rbbp7 (ENSMUSG00000031353)	Reps2 (ENSMUSG00000040855)	Nhs (ENSMUSG00000059493)	Rai2 (ENSMUSG00000043518)	Bend2 (ENSMUSG00000108981)	Scml2 (ENSMUSG00000000037)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000018123.a.a	ENSGT00940000160934 #8	ENSGT00530000063759.a #9	ENSGT00440000033589.c #10	ENSGT00950000183170.a #11	ENSGT00940000159096 #12	ENSGT00940000158301 #14	ENSGT00390000012529 #15	ENSGT00390000008576 #16	ENSGT00940000158492 #17	ENSGT00390000014556 #18	ENSGT00940000159811 #19	ENSGT00940000158682 #21	ENSGT00940000154837.f.y.b ##22	ENSGT00860000136300	ENSGT00940000154837.f.y.a #22	ENSGT00530000063553.b.b #23	ENSGT00940000159578 #24	ENSGT00950000183118.B #25	ENSGT00390000013367 #26	ENSGT00940000156041 #27	ENSGT00940000154688.b #28	ENSGT00940000159061 #29	ENSGT00390000009505 #30	ENSGT00940000160007 #31	ENSGT00390000007370 #32	ENSGT00390000007315 #33	ENSGT00940000164424	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT01030000234638.b.a.a #35	ENSGT00390000002121.i #36
Steppe mouse	MODERN SPECIES	914																Siah1b (ENSMSIG00000007705) #22
spretus	MODERN SPECIES	17	Sall1 (MGP_SPRETEiJ_G0032480)	Cyld (MGP_SPRETEiJ_G0032479)	Nod2 (MGP_SPRETEiJ_G0032478) #8	Snx20 (MGP_SPRETEiJ_G0032477) #9	Nkd1 (MGP_SPRETEiJ_G0032476) #10	Brd7 (MGP_SPRETEiJ_G0032475) #11	Adcy7 (MGP_SPRETEiJ_G0032474) #12	Tent4b (MGP_SPRETEiJ_G0032473) #14	Heatr3 (MGP_SPRETEiJ_G0032472) #15	Cnep1r1 (MGP_SPRETEiJ_G0032471) #16	Zfp423 (MGP_SPRETEiJ_G0032470) #17	4933402J07Rik (MGP_SPRETEiJ_G0032469) #18	Cbln1 (MGP_SPRETEiJ_G0032468) #19	N4bp1 (MGP_SPRETEiJ_G0032467) #21	MGP_SPRETEiJ_G0032466	MGP_SPRETEiJ_G0032465 #22	Lonp2 (MGP_SPRETEiJ_G0032464) #23	Abcc12 (MGP_SPRETEiJ_G0032463) #24	Phkb (MGP_SPRETEiJ_G0032462) #25	Itfg1 (MGP_SPRETEiJ_G0032461) #26	Neto2 (MGP_SPRETEiJ_G0032460) #27	MGP_SPRETEiJ_G0032459	Dnaja2 (MGP_SPRETEiJ_G0032458) #28	Gpt2 (MGP_SPRETEiJ_G0032457) #29	Mylk3 (MGP_SPRETEiJ_G0032456) #31	Orc6 (MGP_SPRETEiJ_G0032455) #32	Vps35 (MGP_SPRETEiJ_G0032454) #33	Or7c19 (MGP_SPRETEiJ_G0032453)	Zfp791 (MGP_SPRETEiJ_G0032452)	Man2b1 (MGP_SPRETEiJ_G0032451) #35	Wdr83os (MGP_SPRETEiJ_G0032450) #36
Shrew mouse	MODERN SPECIES	23	Trappc2 (MGP_PahariEiJ_G0032111)	Ofd1 (MGP_PahariEiJ_G0032110)	Gpm6b (MGP_PahariEiJ_G0032109)	Gemin8 (MGP_PahariEiJ_G0032108)	Glra2 (MGP_PahariEiJ_G0032107)	Fancb (MGP_PahariEiJ_G0032106)	Mospd2 (MGP_PahariEiJ_G0032105)	Asb9 (MGP_PahariEiJ_G0032104)	Asb11 (MGP_PahariEiJ_G0032103)	MGP_PahariEiJ_G0032102	Vegfd (MGP_PahariEiJ_G0032101)	Pir (MGP_PahariEiJ_G0032100)	Bmx (MGP_PahariEiJ_G0032099)	Ace2 (MGP_PahariEiJ_G0032098)	Cltrn (MGP_PahariEiJ_G0032097)	Siah1b (MGP_PahariEiJ_G0032096) #22	Car5b (MGP_PahariEiJ_G0032095)	Zrsr2 (MGP_PahariEiJ_G0032094)	Ap1s2 (MGP_PahariEiJ_G0032093)	Rnf138rt1 (MGP_PahariEiJ_G0032092)	Grpr (MGP_PahariEiJ_G0032091)	S100g (MGP_PahariEiJ_G0032090)	Ctps2 (MGP_PahariEiJ_G0032089)	Syap1 (MGP_PahariEiJ_G0032088)	Txlng (MGP_PahariEiJ_G0032087)	Rbbp7 (MGP_PahariEiJ_G0032086)	Reps2 (MGP_PahariEiJ_G0032085)	Nhs (MGP_PahariEiJ_G0032084)	Rai2 (MGP_PahariEiJ_G0032083)	MGP_PahariEiJ_G0032082	Gja6 (MGP_PahariEiJ_G0032081)