Hystricomorpha	ANCESTRAL SPECIES	72															ENSGT00940000158682 #21	ENSGT00940000154837.f #22	ENSGT00530000063553.b.b #23	ENSGT00940000159578 #24	ENSGT00950000183118.B #25	ENSGT00390000013367 #26	ENSGT00940000156041 #27	ENSGT00940000154688.b #28	ENSGT00940000159061 #29	ENSGT00390000009505	ENSGT00940000160007	ENSGT00390000007370.r	ENSGT00390000007315	ENSGT00940000161310
Hystricomorpha_a	ANCESTRAL SPECIES	68	ENSGT00940000153692.A #8	ENSGT00950000183015.D #9	ENSGT00940000155680.d #10	ENSGT00940000158223 #11	ENSGT00940000160897	ENSGT01030000234574.B.c.a #12	ENSGT00530000063424.b #13	ENSGT00390000003791.p #14	ENSGT00940000157350 #15	ENSGT00390000004874.a.b #16	ENSGT00940000153771.B #17	ENSGT00940000157329 #18	ENSGT00940000153510.b #19	ENSGT00940000155881 #20	ENSGT00940000158682 #21	ENSGT00940000154837.f #22	ENSGT00530000063553.b.b #23	ENSGT00940000159578 #24	ENSGT00950000183118.B #25	ENSGT00390000013367 #26	ENSGT00940000156041 #27	ENSGT00940000154688.b #28	ENSGT00940000159061 #29	ENSGT00390000009505	ENSGT00940000160007	ENSGT00390000007370.r	ENSGT00390000007315	ENSGT00940000161310
Hystricomorpha_b	ANCESTRAL SPECIES	45	ENSGT00940000153692.A #8	ENSGT00950000183015.D #9	ENSGT00940000155680.d #10	ENSGT00940000158223 #11	ENSGT00940000160897	ENSGT01030000234574.B.c.a #12	ENSGT00530000063424.b #13	ENSGT00390000003791.p #14	ENSGT00940000157350 #15	ENSGT00390000004874.a.b #16	ENSGT00940000153771.B #17	ENSGT00940000157329 #18	ENSGT00940000153510.b #19	ENSGT00940000155881 #20	ENSGT00940000158682 #21	ENSGT00940000154837.f #22	ENSGT00530000063553.b.b #23	ENSGT00940000159578 #24	ENSGT00950000183118.B #25	ENSGT00390000013367 #26	ENSGT00940000156041 #27	ENSGT00940000154688.b #28	ENSGT00940000159061 #29	ENSGT00910000144305 #31	ENSGT00940000154674 #32	ENSGT00940000161551 #33	ENSGT00940000157819 #34	ENSGT01050000244888.b.a.c.b #35	ENSGT00940000160269 #36	ENSGT00940000154200.B #37	ENSGT00940000161728
Long-tailed chinchilla	MODERN SPECIES	181	PTPN13 (ENSCLAG00000006187) #7	MAPK10 (ENSCLAG00000007752) #8	ARHGAP24 (ENSCLAG00000004468) #9	WDFY3 (ENSCLAG00000004977) #10	CDS1 (ENSCLAG00000006900) #11	GPAT3 (ENSCLAG00000007713) #12	ABRAXAS1 (ENSCLAG00000008039) #13	ENSCLAG00000008205 #14	HELQ (ENSCLAG00000004733) #15	HPSE (ENSCLAG00000004879) #16	ENSCLAG00000004962 #17	PLAC8 (ENSCLAG00000005017) #18	COPS4 (ENSCLAG00000005060) #19	LIN54 (ENSCLAG00000006502) #20	N4BP1 (ENSCLAG00000006600) #21	SIAH1 (ENSCLAG00000006639) #22	LONP2 (ENSCLAG00000006722) #23	ABCC12 (ENSCLAG00000006887) #24	PHKB (ENSCLAG00000007130) #25	ITFG1 (ENSCLAG00000007967) #26	NETO2 (ENSCLAG00000008739) #27	ENSCLAG00000002868 #28	GPT2 (ENSCLAG00000003182) #29	ENSCLAG00000003230 #30	HLTF (ENSCLAG00000003408) #31	GYG1 (ENSCLAG00000003920) #32	CPA3 (ENSCLAG00000004064) #33	CPB1 (ENSCLAG00000004152) #34	AGTR1 (ENSCLAG00000004411) #35	ZIC1 (ENSCLAG00000006845) #36	ZIC4 (ENSCLAG00000007107) #37
Degu	MODERN SPECIES	69	NKX6-1 (ENSODEG00000009272)	ENSODEG00000007028	ENSODEG00000007416	ENSODEG00000019508	ENSODEG00000008639 #12	ENSODEG00000008636	ABRAXAS1 (ENSODEG00000009343) #13	ENSODEG00000007599 #14	HELQ (ENSODEG00000008738) #15	HPSE (ENSODEG00000007894) #16	COQ2 (ENSODEG00000007764) #17	PLAC8 (ENSODEG00000008537) #18	ENSODEG00000008788 #19	LIN54 (ENSODEG00000009071) #20	N4BP1 (ENSODEG00000009642) #21	SIAH1 (ENSODEG00000010400) #22	ENSODEG00000007971 #23	ENSODEG00000009232 #23	ABCC12 (ENSODEG00000010786) #24	PHKB (ENSODEG00000008822) #25	ITFG1 (ENSODEG00000007883) #26	ENSODEG00000008342	NETO2 (ENSODEG00000008553) #27	ENSODEG00000007831 #28	GPT2 (ENSODEG00000008090) #29	HLTF (ENSODEG00000009415) #31	ENSODEG00000009053 #32	CPA3 (ENSODEG00000008292) #33	CPB1 (ENSODEG00000011062) #34	AGTR1 (ENSODEG00000019590) #35	ENSODEG00000019589
Guinea pig	MODERN SPECIES	33	PTPN13 (ENSCPOG00000007122) #7	MAPK10 (ENSCPOG00000013605) #8	ARHGAP24 (ENSCPOG00000012796) #9	WDFY3 (ENSCPOG00000006746) #10	CDS1 (ENSCPOG00000030064) #11	GPAT3 (ENSCPOG00000014802) #12	ABRAXAS1 (ENSCPOG00000001374) #13	MRPS18C (ENSCPOG00000009198) #14	HELQ (ENSCPOG00000009180) #15	HPSE (ENSCPOG00000001853) #16	COQ2 (ENSCPOG00000035211) #17	PLAC8 (ENSCPOG00000026026) #18	COPS4 (ENSCPOG00000020170) #19	LIN54 (ENSCPOG00000001139) #20	N4BP1 (ENSCPOG00000022635) #21	SIAH1 (ENSCPOG00000020708) #22	LONP2 (ENSCPOG00000003859) #23	ABCC12 (ENSCPOG00000006873) #24	PHKB (ENSCPOG00000006408) #25	ITFG1 (ENSCPOG00000006398) #26	NETO2 (ENSCPOG00000011813) #27	ENSCPOG00000006955 #28	GPT2 (ENSCPOG00000013685) #29	C16orf87 (ENSCPOG00000010228)	MYLK3 (ENSCPOG00000003786)	ORC6 (ENSCPOG00000003779)	VPS35 (ENSCPOG00000003773)	SHCBP1 (ENSCPOG00000023425)	PTCHD3 (ENSCPOG00000026866)	ENSCPOG00000032879	ENSCPOG00000035406
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000033455	GK5 (ENSHGLG00000014374)	XRN1 (ENSHGLG00000014476)	ATR (ENSHGLG00000016875)	TRPC1 (ENSHGLG00000017039)	ENSHGLG00000048356	PCOLCE2 (ENSHGLG00000017054)	PAQR9 (ENSHGLG00000017213)	U2SURP (ENSHGLG00000017227)	CHST2 (ENSHGLG00000041521)	ENSHGLG00000018200	ENSHGLG00000011825	ENSHGLG00000044802	ENSHGLG00000019576 #21	ENSHGLG00000003222	SIAH1 (ENSHGLG00000003142) #22	ENSHGLG00000003081 #23	ENSHGLG00000048075	ENSHGLG00000003031	ENSHGLG00000039002	ENSHGLG00000047723	ENSHGLG00000048126	ENSHGLG00000012004	ENSHGLG00000032846	PHKB (ENSHGLG00000002597) #25	ITFG1 (ENSHGLG00000002469) #26	NETO2 (ENSHGLG00000002342) #27	ENSHGLG00000002300	ENSHGLG00000002271	ENSHGLG00000002235 #28	ENSHGLG00000050778 #29
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000045321	ENSHGLG00000042358	ENSHGLG00000000746	ENSHGLG00000020121	ENSHGLG00000032106	ENSHGLG00000041333	ENSHGLG00000044343	ENSHGLG00000035030	ENSHGLG00000019642	ENSHGLG00000009764	ENSHGLG00000036657	ENSHGLG00000044549	ENSHGLG00000000510	ENSHGLG00000019985	ENSHGLG00000046356	ENSHGLG00000009234 #22	ENSHGLG00000043662	ENSHGLG00000041448	ENSHGLG00000040729	ENSHGLG00000046780	ENSHGLG00000036605	ENSHGLG00000045900	ENSHGLG00000048949	ENSHGLG00000020965	ENSHGLG00000039295	ENSHGLG00000043095	ENSHGLG00000050360	ENSHGLG00000045720	ENSHGLG00000037899	ENSHGLG00000048591	ENSHGLG00000043878