Rodentia_A ANCESTRAL SPECIES 6 ENSGT00940000155938 ENSGT00390000018123.a.a ENSGT00940000160934 ENSGT00530000063759.a ENSGT00440000033589.c ENSGT00950000183170.a ENSGT00940000159096 ENSGT00940000158301 ENSGT00960000190798 ENSGT00390000012529 ENSGT00390000008576 ENSGT00940000158492 #16 ENSGT00390000014556 #17 ENSGT00940000159811 #18 ENSGT00940000158682 #20 ENSGT00940000154837.f #22 ENSGT00530000063553.b.b #23 ENSGT00940000162968 ENSGT00940000159578 ENSGT00950000183118.B ENSGT00390000013367 ENSGT00940000156041 ENSGT00940000154688.b ENSGT00940000159061 ENSGT00390000009505 ENSGT00940000160007 ENSGT00390000007370 ENSGT00390000007315 ENSGT00940000163206.a ENSGT00940000161310 ENSGT00390000001014 Sciuridae ANCESTRAL SPECIES 5 ENSGT00390000018123.a.a ENSGT00940000160934 ENSGT00530000063759.a ENSGT00440000033589.c ENSGT00950000183170.a ENSGT00940000159096 ENSGT00940000158301 ENSGT00960000190798 ENSGT00390000012529 ENSGT00390000008576 ENSGT00940000158492 #16 ENSGT00390000014556 #17 ENSGT00940000159811 #18 ENSGT00940000158682 #20 ENSGT00940000175746.a.a #21 ENSGT00940000154837.f #22 ENSGT00530000063553.b.b #23 ENSGT00940000162968 ENSGT00940000159578 ENSGT00950000183118.B ENSGT00390000013367 ENSGT00940000156041 ENSGT00940000154688.b ENSGT00940000159061 ENSGT00390000009505 ENSGT00940000160007 ENSGT00390000007370 ENSGT00390000007315 ENSGT00940000163206.a ENSGT00940000161310 ENSGT00390000001014.s Marmotini ANCESTRAL SPECIES 17 ENSGT00390000018123.a.a ENSGT00940000160934 ENSGT00530000063759.a ENSGT00440000033589.c ENSGT00950000183170.a ENSGT00940000159096 ENSGT00940000158301 ENSGT00960000190798 ENSGT00390000012529 ENSGT00390000008576 ENSGT00940000158492 #16 ENSGT00390000014556 #17 ENSGT00940000159811 #18 ENSGT00940000158682 #20 ENSGT00940000175746.a.a.a #21 ENSGT00940000154837.f #22 ENSGT00530000063553.b.b #23 ENSGT00940000162968 ENSGT00940000159578 ENSGT00950000183118.B ENSGT00390000013367 ENSGT00940000156041 ENSGT00940000154688.b ENSGT00940000159061 ENSGT00390000009505 ENSGT00940000160007 ENSGT00390000007370 ENSGT00390000007315 ENSGT00940000163206.a ENSGT00940000161310 Marmotini_b ANCESTRAL SPECIES 7 ENSGT00390000018123.a.a ENSGT00940000160934 ENSGT00530000063759.a ENSGT00440000033589.c ENSGT00950000183170.a ENSGT00940000159096 ENSGT00940000158301 ENSGT00960000190798 ENSGT00390000012529 ENSGT00390000008576 ENSGT00940000158492 #16 ENSGT00390000014556 #17 ENSGT00940000159811 #18 ENSGT00940000158682 #20 ENSGT00940000175746.a.a.a #21 ENSGT00940000154837.f #22 ENSGT00530000063553.b.b #23 ENSGT00940000162968 ENSGT00940000159578 ENSGT00950000183118.B ENSGT00390000013367 ENSGT00940000156041 ENSGT00940000154688.b ENSGT00940000159061 ENSGT00390000009505 ENSGT00940000160007 ENSGT00390000007370 ENSGT00390000007315 ENSGT00940000163206.a ENSGT00940000161310 Arctic ground squirrel MODERN SPECIES 446 ZNF423 (ENSUPAG00010005254) #16 ENSUPAG00010005243 #17 CBLN1 (ENSUPAG00010005237) #18 ENSUPAG00010005232 #19 N4BP1 (ENSUPAG00010005221) #20 ENSUPAG00010005216 #21 SIAH1 (ENSUPAG00010005210) #22 ENSUPAG00010005197 #23 Squirrel MODERN SPECIES 75 TOX3 (ENSSTOG00000009587) SALL1 (ENSSTOG00000020885) CYLD (ENSSTOG00000010194) NOD2 (ENSSTOG00000025139) SNX20 (ENSSTOG00000031296) NKD1 (ENSSTOG00000027729) BRD7 (ENSSTOG00000024547) ADCY7 (ENSSTOG00000001199) ENSSTOG00000001196 HEATR3 (ENSSTOG00000001183) CNEP1R1 (ENSSTOG00000001179) ZNF423 (ENSSTOG00000028569) #16 ENSSTOG00000005303 #17 CBLN1 (ENSSTOG00000027557) #18 N4BP1 (ENSSTOG00000006205) #20 SIAH1 (ENSSTOG00000008805) #22 LONP2 (ENSSTOG00000008780) #23 ABCC12 (ENSSTOG00000028133) PHKB (ENSSTOG00000007705) ITFG1 (ENSSTOG00000007671) NETO2 (ENSSTOG00000004037) ENSSTOG00000031645 DNAJA2 (ENSSTOG00000004007) GPT2 (ENSSTOG00000014851) C16orf87 (ENSSTOG00000027329) MYLK3 (ENSSTOG00000003802) ORC6 (ENSSTOG00000003785) VPS35 (ENSSTOG00000003772) ENSSTOG00000025341 Alpin marmot MODERN SPECIES 23 CYLD (ENSMMMG00000013093) NOD2 (ENSMMMG00000013415) SNX20 (ENSMMMG00000013445) NKD1 (ENSMMMG00000013451) BRD7 (ENSMMMG00000013473) ADCY7 (ENSMMMG00000013505) ENSMMMG00000014304 HEATR3 (ENSMMMG00000014311) CNEP1R1 (ENSMMMG00000014341) ZNF423 (ENSMMMG00000014383) #16 ENSMMMG00000014403 #17 CBLN1 (ENSMMMG00000014438) #18 N4BP1 (ENSMMMG00000014453) #20 ENSMMMG00000014456 ENSMMMG00000014468 #21 SIAH1 (ENSMMMG00000014478) #22 LONP2 (ENSMMMG00000014489) #23 ABCC11 (ENSMMMG00000014520) ABCC12 (ENSMMMG00000014549) ENSMMMG00000014636 PHKB (ENSMMMG00000014653) ITFG1 (ENSMMMG00000014700) NETO2 (ENSMMMG00000015229) ENSMMMG00000015252 GPT2 (ENSMMMG00000015258) ENSMMMG00000015275 C16orf87 (ENSMMMG00000015312) MYLK3 (ENSMMMG00000015317) ORC6 (ENSMMMG00000015378) VPS35 (ENSMMMG00000015395) ENSMMMG00000015425 Eurasian red squirrel MODERN SPECIES 8 NKD1 (ENSSVLG00005025829) ENSSVLG00005025838 ADCY7 (ENSSVLG00005025857) TENT4B (ENSSVLG00005025875) HEATR3 (ENSSVLG00005025878) ENSSVLG00005025884 ENSSVLG00005025890 ENSSVLG00005025893 ENSSVLG00005025899 ZNF423 (ENSSVLG00005016875) #16 ENSSVLG00005016966 #17 CBLN1 (ENSSVLG00005017023) #18 ENSSVLG00005017072 N4BP1 (ENSSVLG00005017117) #20 ENSSVLG00005017168 #21 SIAH1 (ENSSVLG00005017212) #22 LONP2 (ENSSVLG00005017285) #23 ABCC11 (ENSSVLG00005017407) ABCC12 (ENSSVLG00005018066) ENSSVLG00005018386 ITFG1 (ENSSVLG00005018515) NETO2 (ENSSVLG00005018574) ENSSVLG00005018635 ENSSVLG00005018657 GPT2 (ENSSVLG00005018752) C16orf87 (ENSSVLG00005018828) ENSSVLG00005018900 MYLK3 (ENSSVLG00005018924) ENSSVLG00005019080 VPS35 (ENSSVLG00005019175) ENSSVLG00005019566 Hystricomorpha ANCESTRAL SPECIES 72 ENSGT00940000158682 #20 ENSGT00940000154837.f #22 ENSGT00530000063553.b.b #23 ENSGT00940000159578 ENSGT00950000183118.B ENSGT00390000013367 ENSGT00940000156041 ENSGT00940000154688.b ENSGT00940000159061 ENSGT00390000009505 ENSGT00940000160007 ENSGT00390000007370.r ENSGT00390000007315 ENSGT00940000161310 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 27 ENSHGLG00000033455 GK5 (ENSHGLG00000014374) XRN1 (ENSHGLG00000014476) ATR (ENSHGLG00000016875) TRPC1 (ENSHGLG00000017039) ENSHGLG00000048356 PCOLCE2 (ENSHGLG00000017054) PAQR9 (ENSHGLG00000017213) U2SURP (ENSHGLG00000017227) CHST2 (ENSHGLG00000041521) ENSHGLG00000018200 ENSHGLG00000011825 ENSHGLG00000044802 ENSHGLG00000019576 #20 ENSHGLG00000003222 SIAH1 (ENSHGLG00000003142) #22 ENSHGLG00000003081 #23 ENSHGLG00000048075 ENSHGLG00000003031 ENSHGLG00000039002 ENSHGLG00000047723 ENSHGLG00000048126 ENSHGLG00000012004 ENSHGLG00000032846 PHKB (ENSHGLG00000002597) ITFG1 (ENSHGLG00000002469) NETO2 (ENSHGLG00000002342) ENSHGLG00000002300 ENSHGLG00000002271 ENSHGLG00000002235 ENSHGLG00000050778 Naked mole-rat female MODERN SPECIES ENSHGLG00000045321 ENSHGLG00000042358 ENSHGLG00000000746 ENSHGLG00000020121 ENSHGLG00000032106 ENSHGLG00000041333 ENSHGLG00000044343 ENSHGLG00000035030 ENSHGLG00000019642 ENSHGLG00000009764 ENSHGLG00000036657 ENSHGLG00000044549 ENSHGLG00000000510 ENSHGLG00000019985 ENSHGLG00000046356 ENSHGLG00000009234 #22 ENSHGLG00000043662 ENSHGLG00000041448 ENSHGLG00000040729 ENSHGLG00000046780 ENSHGLG00000036605 ENSHGLG00000045900 ENSHGLG00000048949 ENSHGLG00000020965 ENSHGLG00000039295 ENSHGLG00000043095 ENSHGLG00000050360 ENSHGLG00000045720 ENSHGLG00000037899 ENSHGLG00000048591 ENSHGLG00000043878 Hystricomorpha_a ANCESTRAL SPECIES 68 ENSGT00940000153692.A ENSGT00950000183015.D ENSGT00940000155680.d ENSGT00940000158223 ENSGT00940000160897 ENSGT01030000234574.B.c.a ENSGT00530000063424.b ENSGT00390000003791.p ENSGT00940000157350 ENSGT00390000004874.a.b ENSGT00940000153771.B ENSGT00940000157329 ENSGT00940000153510.b ENSGT00940000155881 ENSGT00940000158682 #20 ENSGT00940000154837.f #22 ENSGT00530000063553.b.b #23 ENSGT00940000159578 ENSGT00950000183118.B ENSGT00390000013367 ENSGT00940000156041 ENSGT00940000154688.b ENSGT00940000159061 ENSGT00390000009505 ENSGT00940000160007 ENSGT00390000007370.r ENSGT00390000007315 ENSGT00940000161310 Guinea pig MODERN SPECIES 33 PTPN13 (ENSCPOG00000007122) MAPK10 (ENSCPOG00000013605) ARHGAP24 (ENSCPOG00000012796) WDFY3 (ENSCPOG00000006746) CDS1 (ENSCPOG00000030064) GPAT3 (ENSCPOG00000014802) ABRAXAS1 (ENSCPOG00000001374) MRPS18C (ENSCPOG00000009198) HELQ (ENSCPOG00000009180) HPSE (ENSCPOG00000001853) COQ2 (ENSCPOG00000035211) PLAC8 (ENSCPOG00000026026) COPS4 (ENSCPOG00000020170) LIN54 (ENSCPOG00000001139) N4BP1 (ENSCPOG00000022635) #20 SIAH1 (ENSCPOG00000020708) #22 LONP2 (ENSCPOG00000003859) #23 ABCC12 (ENSCPOG00000006873) PHKB (ENSCPOG00000006408) ITFG1 (ENSCPOG00000006398) NETO2 (ENSCPOG00000011813) ENSCPOG00000006955 GPT2 (ENSCPOG00000013685) C16orf87 (ENSCPOG00000010228) MYLK3 (ENSCPOG00000003786) ORC6 (ENSCPOG00000003779) VPS35 (ENSCPOG00000003773) SHCBP1 (ENSCPOG00000023425) PTCHD3 (ENSCPOG00000026866) ENSCPOG00000032879 ENSCPOG00000035406 Hystricomorpha_b ANCESTRAL SPECIES 45 ENSGT00940000153692.A ENSGT00950000183015.D ENSGT00940000155680.d ENSGT00940000158223 ENSGT00940000160897 ENSGT01030000234574.B.c.a ENSGT00530000063424.b ENSGT00390000003791.p ENSGT00940000157350 ENSGT00390000004874.a.b ENSGT00940000153771.B ENSGT00940000157329 ENSGT00940000153510.b ENSGT00940000155881 ENSGT00940000158682 #20 ENSGT00940000154837.f #22 ENSGT00530000063553.b.b #23 ENSGT00940000159578 ENSGT00950000183118.B ENSGT00390000013367 ENSGT00940000156041 ENSGT00940000154688.b ENSGT00940000159061 ENSGT00910000144305 ENSGT00940000154674 ENSGT00940000161551 ENSGT00940000157819 ENSGT01050000244888.b.a.c.b ENSGT00940000160269 ENSGT00940000154200.B ENSGT00940000161728 Degu MODERN SPECIES 69 NKX6-1 (ENSODEG00000009272) ENSODEG00000007028 ENSODEG00000007416 ENSODEG00000019508 ENSODEG00000008639 ENSODEG00000008636 ABRAXAS1 (ENSODEG00000009343) ENSODEG00000007599 HELQ (ENSODEG00000008738) HPSE (ENSODEG00000007894) COQ2 (ENSODEG00000007764) PLAC8 (ENSODEG00000008537) ENSODEG00000008788 LIN54 (ENSODEG00000009071) N4BP1 (ENSODEG00000009642) #20 SIAH1 (ENSODEG00000010400) #22 ENSODEG00000007971 #23 ENSODEG00000009232 #23 ABCC12 (ENSODEG00000010786) PHKB (ENSODEG00000008822) ITFG1 (ENSODEG00000007883) ENSODEG00000008342 NETO2 (ENSODEG00000008553) ENSODEG00000007831 GPT2 (ENSODEG00000008090) HLTF (ENSODEG00000009415) ENSODEG00000009053 CPA3 (ENSODEG00000008292) CPB1 (ENSODEG00000011062) AGTR1 (ENSODEG00000019590) ENSODEG00000019589 Long-tailed chinchilla MODERN SPECIES 181 PTPN13 (ENSCLAG00000006187) MAPK10 (ENSCLAG00000007752) ARHGAP24 (ENSCLAG00000004468) WDFY3 (ENSCLAG00000004977) CDS1 (ENSCLAG00000006900) GPAT3 (ENSCLAG00000007713) ABRAXAS1 (ENSCLAG00000008039) ENSCLAG00000008205 HELQ (ENSCLAG00000004733) HPSE (ENSCLAG00000004879) ENSCLAG00000004962 PLAC8 (ENSCLAG00000005017) COPS4 (ENSCLAG00000005060) LIN54 (ENSCLAG00000006502) N4BP1 (ENSCLAG00000006600) #20 SIAH1 (ENSCLAG00000006639) #22 LONP2 (ENSCLAG00000006722) #23 ABCC12 (ENSCLAG00000006887) PHKB (ENSCLAG00000007130) ITFG1 (ENSCLAG00000007967) NETO2 (ENSCLAG00000008739) ENSCLAG00000002868 GPT2 (ENSCLAG00000003182) ENSCLAG00000003230 HLTF (ENSCLAG00000003408) GYG1 (ENSCLAG00000003920) CPA3 (ENSCLAG00000004064) CPB1 (ENSCLAG00000004152) AGTR1 (ENSCLAG00000004411) ZIC1 (ENSCLAG00000006845) ZIC4 (ENSCLAG00000007107)