Euteleostomi	ANCESTRAL SPECIES	33	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000172406	ENSGT00940000157439 #22	ENSGT00940000166447 #23	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00950000184771	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000156314	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874	ENSGT00440000039055
Actinopterygii	ANCESTRAL SPECIES	60				ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874	ENSGT00440000039055	ENSGT00390000004690.a.a	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00940000172406	ENSGT00940000157439 #22	ENSGT00940000166447 #23	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000159590	ENSGT00390000011219 #20	ENSGT00940000154534.b.b ##19	ENSGT00390000000713 #18	ENSGT00390000004405.b #16	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00940000154152
Neopterygii	ANCESTRAL SPECIES	128	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354 #7	ENSGT00940000161108	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000161434	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000172406	ENSGT00940000157439 #22	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000159590
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	41	ENSGT00940000161108	ENSGT00940000158354.d ##7	ENSGT00940000158354.c #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000166856 #12	ENSGT00390000017856.b #13	ENSGT00940000154152.a	ENSGT00940000160113 #14	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.a.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B
Osteoglossiformes	ANCESTRAL SPECIES	43	ENSGT00940000158354.c #7	ENSGT00940000162072 #8	ENSGT00940000159774.b.a #9	ENSGT00940000155029.c.b.b #10	ENSGT00940000166856 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000004405.b #16	ENSGT00940000157439.a ##22	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.a #19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.a.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B
Asian bonytongue	MODERN SPECIES	13	hoxb5b (ENSSFOG00015002080) #7	hoxb4a (ENSSFOG00015002053) #8	hoxb3a (ENSSFOG00015033106) #9	HOXB2 (ENSSFOG00015001984) #10	ENSSFOG00015001958 #11	hoxb1a (ENSSFOG00015001903) #12	skap1 (ENSSFOG00015001828) #13	snx11 (ENSSFOG00015001657) #14	NFE2L1 (ENSSFOG00015001617) #15	COPZ2 (ENSSFOG00015001561) #16	ENSSFOG00015001531 #17	cdk5rap3 (ENSSFOG00015001461) #18	prr15la (ENSSFOG00015001431) #19	pnpo (ENSSFOG00015029234) #20	mrpl10 (ENSSFOG00015001414) #21	osbpl7 (ENSSFOG00015001331) #22	tbx21 (ENSSFOG00015028517) #23	TBKBP1 (ENSSFOG00015000820) #24	PDK2 (ENSSFOG00015000764) #25	MYO1D (ENSSFOG00015000681) #26	cdk5r1b (ENSSFOG00015030884) #27	psmd11b (ENSSFOG00015000603) #28	ENSSFOG00015025854 #29	nsfb (ENSSFOG00015000512) #30	wnt3 (ENSSFOG00015000492) #31	ormdl3 (ENSSFOG00015000476) #32	ENSSFOG00015000434 #33	slc25a35 (ENSSFOG00015000398) #34	rangrf (ENSSFOG00015000389) #35	grk1b (ENSSFOG00015000349) #36	ENSSFOG00015032597 #37
P. kingsleyae	MODERN SPECIES	140	hoxb7a (ENSPKIG00000000397)	hoxb6a (ENSPKIG00000000403)	hoxb5b (ENSPKIG00000000411) #7	hoxb4a (ENSPKIG00000000416) #8	hoxb3a (ENSPKIG00000000431) #9	hoxb2a (ENSPKIG00000000447) #10	hoxb1a (ENSPKIG00000000454) #12	skap1 (ENSPKIG00000000481) #13	NFE2L1 (ENSPKIG00000000547) #15	copz2 (ENSPKIG00000000610) #16	ENSPKIG00000000651 #17	cdk5rap3 (ENSPKIG00000000684) #18	prr15la (ENSPKIG00000000717) #19	pnpo (ENSPKIG00000000733) #20	mrpl10 (ENSPKIG00000000749) #21	osbpl7 (ENSPKIG00000000792) #22	tbx21 (ENSPKIG00000000866) #23	ENSPKIG00000000901 ##24	PDK2 (ENSPKIG00000000931) #25	ENSPKIG00000000976	MYO1D (ENSPKIG00000000999) #26	cdk5r1b (ENSPKIG00000001019) #27	psmd11b (ENSPKIG00000001035) #28	nsfb (ENSPKIG00000001091) #30	wnt3 (ENSPKIG00000001145) #31	ormdl3 (ENSPKIG00000001166) #32	thraa (ENSPKIG00000001202)	DHX8 (ENSPKIG00000001290)	etv4 (ENSPKIG00000001383)	meox1 (ENSPKIG00000001445)	SOST (ENSPKIG00000001485)
Clupeocephala	ANCESTRAL SPECIES	43					ENSGT00940000165637	ENSGT00950000182844.b.b.b.b	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.a.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Otomorpha	ANCESTRAL SPECIES	1	ENSGT00940000161485	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000154323.a	ENSGT00940000160435	ENSGT00940000154152.b.b	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.a.a	ENSGT00940000162682.B.b	ENSGT00940000157917.a.b	ENSGT00940000155510	ENSGT00940000158142
Clupeiformes	ANCESTRAL SPECIES	5	ENSGT00940000164352.a	ENSGT00940000158812.j.a	ENSGT00500000044930.e.a	ENSGT00390000009492	ENSGT00940000156940.b	ENSGT00940000162800	ENSGT00950000182951.A.a.a.c.a.a	ENSGT00390000017961	ENSGT01060000248591.a.a.a.a.a	ENSGT00940000154323.a	ENSGT00940000160435	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.a.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Atlantic herring	MODERN SPECIES	15	atpaf2 (ENSCHAG00000023232)	tom1l2 (ENSCHAG00000023210)	foxl3 (ENSCHAG00000023206)	FAM20C (ENSCHAG00000023040)	trrap (ENSCHAG00000022036)	nptx2b (ENSCHAG00000022009)	ENSCHAG00000021994	tmem130 (ENSCHAG00000021985)	ccdc189 (ENSCHAG00000021976)	phkg2 (ENSCHAG00000021900)	NFE2L1 (ENSCHAG00000021868) #15	cdk5rap3 (ENSCHAG00000021352) #18	ENSCHAG00000021332 #19	pnpo (ENSCHAG00000021317) #20	mrpl10 (ENSCHAG00000021277) #21	osbpl7 (ENSCHAG00000020861) #22	tbx21 (ENSCHAG00000020835) #23	TBKBP1 (ENSCHAG00000020823) #24	PDK2 (ENSCHAG00000020213) #25	MYO1D (ENSCHAG00000019547) #26	cdk5r1b (ENSCHAG00000019504) #27	psmd11b (ENSCHAG00000019372) #28	nsfb (ENSCHAG00000018607) #30	wnt3 (ENSCHAG00000018541) #31	ormdl3 (ENSCHAG00000018526) #32	ENSCHAG00000018519	DHX8 (ENSCHAG00000015803)	etv4 (ENSCHAG00000015717)	meox1 (ENSCHAG00000015699)	SOST (ENSCHAG00000015693)	thraa (ENSCHAG00000015123)
Denticle herring	MODERN SPECIES	18	ENSDCDG00000029345	noxo1b (ENSDCDG00000029351)	GID4 (ENSDCDG00000029352)	atpaf2 (ENSDCDG00000029355)	tom1l2 (ENSDCDG00000029360)	foxl3 (ENSDCDG00000029403)	FAM20C (ENSDCDG00000005588)	trrap (ENSDCDG00000007651)	nptx2b (ENSDCDG00000009961)	phkg2 (ENSDCDG00000009965)	NFE2L1 (ENSDCDG00000009981) #15	cdk5rap3 (ENSDCDG00000010004) #18	ENSDCDG00000010275 #19	pnpo (ENSDCDG00000010278) #20	mrpl10 (ENSDCDG00000010282) #21	osbpl7 (ENSDCDG00000010329) #22	tbx21 (ENSDCDG00000010837) #23	TBKBP1 (ENSDCDG00000010966) #24	PDK2 (ENSDCDG00000011078) #25	MYO1D (ENSDCDG00000013011) #26	cdk5r1b (ENSDCDG00000013097) #27	nsfb (ENSDCDG00000013146) #30	wnt3 (ENSDCDG00000015438) #31	ormdl3 (ENSDCDG00000015446) #32	thraa (ENSDCDG00000015512)	DHX8 (ENSDCDG00000017361)	etv4 (ENSDCDG00000017668)	meox1 (ENSDCDG00000017678)	SOST (ENSDCDG00000017681)	ENSDCDG00000017684	arl4d (ENSDCDG00000017691)
Otophysi	ANCESTRAL SPECIES		ENSGT00940000178773	ENSGT00600000085580	ENSGT00940000165156	ENSGT00530000067530	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000154323.a	ENSGT00940000160435	ENSGT00940000154152.b.b	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00390000005895	ENSGT00940000156819.a.b	ENSGT01090000260051.b.a.b	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000155510	ENSGT00940000158142
Characiphysae	ANCESTRAL SPECIES	1	ENSGT00940000178773	ENSGT00600000085580	ENSGT00940000165156	ENSGT00530000067530	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000154323.a	ENSGT00940000160435	ENSGT00940000154152.b.b	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00390000005895	ENSGT00940000156819.a.b	ENSGT01090000260051.b.a.b	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a
Channel catfish	MODERN SPECIES	4	ENSIPUG00000018080	ENSIPUG00000018087	ENSIPUG00000018093	znf668 (ENSIPUG00000018095)	ENSIPUG00000018102	RNF40 (ENSIPUG00000018115)	PHKG2 (ENSIPUG00000018153)	ccdc189 (ENSIPUG00000018176)	cbx1 (ENSIPUG00000018189)	NFE2L1 (ENSIPUG00000018201) #15	ENSIPUG00000018255 #17	cdk5rap3 (ENSIPUG00000018270) #18	prr15lb (ENSIPUG00000018303) ##19	pnpo (ENSIPUG00000018311) #20	mrpl10 (ENSIPUG00000018330) #21	osbpl7 (ENSIPUG00000018363) #22	tbx21 (ENSIPUG00000018470) #23	tbkbp1 (ENSIPUG00000018504) #24	PDK2 (ENSIPUG00000018521) #25	ENSIPUG00000018536	ENSIPUG00000018539	MYO1D (ENSIPUG00000018549) #26	cdk5r1b (ENSIPUG00000018623) #27	psmd11b (ENSIPUG00000018634) #28	ogfod3 (ENSIPUG00000018706)	ENSIPUG00000018711	ENSIPUG00000018713	CACNA1G (ENSIPUG00000018742)	ENSIPUG00000019134	SPATA20 (ENSIPUG00000019141)	dhx8 (ENSIPUG00000019179)
Characiphysae_b	ANCESTRAL SPECIES	3	ENSGT00940000178773	ENSGT00600000085580	ENSGT00940000165156	ENSGT00530000067530	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000154323.a	ENSGT00940000160435	ENSGT00940000154152.b.b	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00390000005895	ENSGT00940000156819.a.b	ENSGT01090000260051.b.a.b	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a
Characoidei	ANCESTRAL SPECIES	6	ENSGT00940000178773	ENSGT00600000085580	ENSGT00940000177683	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000154323.a	ENSGT00940000160435	ENSGT00940000154152.b.b	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00390000005895	ENSGT00940000156819.a.b	ENSGT01090000260051.b.a.b	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a
Red-bellied piranha	MODERN SPECIES	42	ENSPNAG00000000733	ENSPNAG00000000738	ENSPNAG00000000742	znf668 (ENSPNAG00000008178)	ENSPNAG00000000750	RNF40 (ENSPNAG00000008210)	ccdc189 (ENSPNAG00000000790)	phkg2 (ENSPNAG00000008236)	cbx1b (ENSPNAG00000000806)	NFE2L1 (ENSPNAG00000008250) #15	ENSPNAG00000008256 #17	cdk5rap3 (ENSPNAG00000008263) #18	prr15lb (ENSPNAG00000008267) ##19	pnpo (ENSPNAG00000000845) #20	mrpl10 (ENSPNAG00000000847) #21	osbpl7 (ENSPNAG00000000854) #22	tbx21 (ENSPNAG00000008289) #23	TBKBP1 (ENSPNAG00000008294) #24	PDK2 (ENSPNAG00000008307) #25	ENSPNAG00000008311	MYO1D (ENSPNAG00000000903) #26	cdk5r1b (ENSPNAG00000000911) #27	psmd11b (ENSPNAG00000000922) #28	ogfod3 (ENSPNAG00000000928)	ENSPNAG00000000932	ENSPNAG00000008363	ENSPNAG00000000942	CACNA1G (ENSPNAG00000008398)	SPATA20 (ENSPNAG00000000974)	DHX8 (ENSPNAG00000008427)	etv4 (ENSPNAG00000001016)
Mexicana tetra	MODERN SPECIES	19	ENSAMXG00000037059	ENSAMXG00000025206	ENSAMXG00000029663	znf668 (ENSAMXG00000025205)	ENSAMXG00000035525	RNF40 (ENSAMXG00000010694)	phkg2 (ENSAMXG00000040543)	cbx1b (ENSAMXG00000036601)	ENSAMXG00000041124	NFE2L1 (ENSAMXG00000030120) #15	ENSAMXG00000041328 #17	cdk5rap3 (ENSAMXG00000010548) #18	prr15lb (ENSAMXG00000025204) ##19	pnpo (ENSAMXG00000010544) #20	mrpl10 (ENSAMXG00000040331) #21	osbpl7 (ENSAMXG00000010519) #22	tbx21 (ENSAMXG00000010492) #23	TBKBP1 (ENSAMXG00000010457) #24	PDK2 (ENSAMXG00000010438) #25	MYO1D (ENSAMXG00000010422) #26	cdk5r1b (ENSAMXG00000010409) #27	psmd11b (ENSAMXG00000010395) #28	ogfod3 (ENSAMXG00000036703)	ENSAMXG00000025203	ENSAMXG00000035321	ENSAMXG00000030293	ENSAMXG00000036030	ENSAMXG00000029856	SPATA20 (ENSAMXG00000009466)	DHX8 (ENSAMXG00000009430)	etv4 (ENSAMXG00000009346)
Electric eel	MODERN SPECIES	369	gall (ENSEEEG00000005897)	cd37 (ENSEEEG00000005899)	ENSEEEG00000005901	znf668 (ENSEEEG00000005902)	ENSEEEG00000005903	ENSEEEG00000005904	RNF40 (ENSEEEG00000005910)	ccdc189 (ENSEEEG00000005919)	phkg2 (ENSEEEG00000005928)	cbx1b (ENSEEEG00000006003)	NFE2L1 (ENSEEEG00000006006) #15	cdk5rap3 (ENSEEEG00000006028) #18	prr15lb (ENSEEEG00000006315) ##19	pnpo (ENSEEEG00000006316) #20	mrpl10 (ENSEEEG00000006332) #21	osbpl7 (ENSEEEG00000006337) #22	tbx21 (ENSEEEG00000006349) #23	ENSEEEG00000006352	TBKBP1 (ENSEEEG00000006353) #24
Cyprinoidei	ANCESTRAL SPECIES	18	ENSGT00940000161485	ENSGT00940000178773	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000154323.a	ENSGT00940000160435	ENSGT00940000154152.b.b	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00390000005895	ENSGT00940000156819.a.b	ENSGT00940000159664	ENSGT00960000186809	ENSGT00390000004836	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	64	ENSGT00940000160175.a.a	ENSGT00940000164278.d.b	ENSGT01030000234549.a.b.t.b	ENSGT00990000204711.b	ENSGT00940000161485	ENSGT00600000085580	ENSGT00940000165156.f	ENSGT00940000164729.a.b.h	ENSGT00390000002866.a.b	ENSGT00940000160435.c	ENSGT00940000154152.b.b.b	ENSGT00950000182892.a.b.a.b.a.f #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b.f ##19	ENSGT00390000011219.e.b #20	ENSGT00940000157439.b.a #22	ENSGT00940000166447.b #23	ENSGT00940000153704.B.c.a #24	ENSGT01030000234646.B.a.a.a.a.a.b #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411.a #26	ENSGT00390000008812.b.b.a.g #27	ENSGT00530000063301.a.a.c.a.j #28	ENSGT00390000005895.a	ENSGT00940000156819.a.b.c.b	ENSGT00940000156819.a.b.d.a	ENSGT00940000159664.d	ENSGT00390000004836.a	ENSGT00940000155510	ENSGT00940000158142.c	ENSGT00940000154018.a.c.a
Cyprininae_a	ANCESTRAL SPECIES	18	ENSGT00940000160175.a.a	ENSGT00940000164278.d.b	ENSGT01030000234549.a.b.t.b	ENSGT00990000204711.b	ENSGT00940000161485	ENSGT00600000085580	ENSGT00940000165156.f	ENSGT00940000164729.a.b.h	ENSGT00390000002866.a.b	ENSGT00940000160435.c	ENSGT00940000154152.b.b.b	ENSGT00950000182892.a.b.a.b.a.f #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b.f ##19	ENSGT00390000011219.e.b #20	ENSGT00940000157439.b.a #22	ENSGT00940000166447.b #23	ENSGT00940000153704.B.c.a #24	ENSGT01030000234646.B.a.a.a.a.a.b #25	ENSGT00940000156038.a.b.b.c	ENSGT00940000157411.a #26	ENSGT00390000008812.b.b.a.g #27	ENSGT00530000063301.a.a.c.a.j #28	ENSGT00390000005895.a	ENSGT00940000156819.a.b.c.b	ENSGT00940000156819.a.b.d.a	ENSGT00940000159664.d	ENSGT00390000004836.a	ENSGT00940000155510.v	ENSGT00940000158142.c	ENSGT00940000154018.a.c.a
Golden-line barbel	MODERN SPECIES	25	mxtx2 (ENSSGRG00000018876)	ENSSGRG00000018875	ENSSGRG00000018874	gabrz (ENSSGRG00000018872)	valopb (ENSSGRG00000018871)	gall (ENSSGRG00000018870)	cd37 (ENSSGRG00000018868)	znf668 (ENSSGRG00000018864)	ENSSGRG00000018862	RNF40 (ENSSGRG00000017954)	phkg2 (ENSSGRG00000017924)	cbx1b (ENSSGRG00000017920)	nfe2l1b (ENSSGRG00000017919) #15	prr15lb (ENSSGRG00000017916) ##19	pnpo (ENSSGRG00000017907) #20	osbpl7 (ENSSGRG00000017476) #22	tbx21 (ENSSGRG00000017468) #23	ENSSGRG00000017466 #24	PDK2 (ENSSGRG00000016914) #25	ENSSGRG00000016909	MYO1D (ENSSGRG00000015949) #26	cdk5r1b (ENSSGRG00000015939) #27	psmd11b (ENSSGRG00000015897) #28	ogfod3 (ENSSGRG00000015896)	ENSSGRG00000015895
Common carp reference	MODERN SPECIES	25	gabrz (ENSCCRG00000059296)	valopb (ENSCCRG00000078822)	ENSCCRG00000055797	gall (ENSCCRG00000071394)	cd37 (ENSCCRG00000018649)	ENSCCRG00000078537	ENSCCRG00000058890	znf668 (ENSCCRG00000031067)	RNF40 (ENSCCRG00000030970)	ccdc189 (ENSCCRG00000030884)	cbx1b (ENSCCRG00000030872)	phkg2 (ENSCCRG00000070942)	NFE2L1 (ENSCCRG00000027844) #15	prr15lb (ENSCCRG00000058633) ##19	cdk5rap3 (ENSCCRG00000027849) #18	osbpl7 (ENSCCRG00000027864) #22	tbx21 (ENSCCRG00000027877) #23	TBKBP1 (ENSCCRG00000077031) #24	ENSCCRG00000063984 #24	ENSCCRG00000027898 #25	ENSCCRG00000076292 #26	cdk5r1b (ENSCCRG00000068741) #27	psmd11b (ENSCCRG00000024625) #28	ogfod3 (ENSCCRG00000070519)	ENSCCRG00000026002	ENSCCRG00000053281	ENSCCRG00000078541	ENSCCRG00000023174	DHX8 (ENSCCRG00000065848)	etv4 (ENSCCRG00000021484)	meox1 (ENSCCRG00000059426)
Goldfish	MODERN SPECIES	3	valopb (ENSCARG00000002242)	gall (ENSCARG00000002254)	cd37 (ENSCARG00000002261)	ENSCARG00000002268	znf668 (ENSCARG00000002275)	ENSCARG00000002279	RNF40 (ENSCARG00000002345)	phkg2 (ENSCARG00000002488)	ENSCARG00000002537	cbx1b (ENSCARG00000002543)	NFE2L1 (ENSCARG00000002569) #15	cdk5rap3 (ENSCARG00000002583) #18	prr15lb (ENSCARG00000002595) ##19	pnpo (ENSCARG00000002600) #20	mrpl10 (ENSCARG00000002611) #21	osbpl7 (ENSCARG00000002627) #22	tbx21 (ENSCARG00000002646) #23	TBKBP1 (ENSCARG00000002654) #24	PDK2 (ENSCARG00000002696) #25	MYO1D (ENSCARG00000003148) #26	cdk5r1b (ENSCARG00000005645) #27	psmd11b (ENSCARG00000005665) #28	ogfod3 (ENSCARG00000005679)	ENSCARG00000005695	ENSCARG00000005702	CACNA1G (ENSCARG00000005904)	DHX8 (ENSCARG00000009308)	etv4 (ENSCARG00000014605)	meox1 (ENSCARG00000014631)	SOST (ENSCARG00000014639)	ENSCARG00000014643
Cyprininae	ANCESTRAL SPECIES	172	ENSGT00940000164278.d.a	ENSGT01030000234549.a.b.t.a	ENSGT00990000204711.a	ENSGT00940000165156.e	ENSGT00940000164729.a.b.g	ENSGT00390000002866.a.a	ENSGT00940000154323.a	ENSGT00940000160435.d	ENSGT00940000154152.b.b.a	ENSGT00950000182892.a.b.a.b.a.e #15	ENSGT00750000118756.a #17	ENSGT00390000011219.f #20	ENSGT00940000154534.b.b.e ##19	ENSGT00390000011219.e.a #20	ENSGT00390000000603 #21	ENSGT00940000157439.b.b #22	ENSGT00940000166447.a #23	ENSGT00940000153704.B.c.b.a #24	ENSGT01030000234646.B.a.a.a.a.a.a #25	ENSGT00940000157411.b #26	ENSGT00390000008812.b.b.a.h #27	ENSGT00530000063301.a.a.c.a.i #28	ENSGT00390000005895.b	ENSGT00940000156819.a.b.c.a
Cyprininae_a	ANCESTRAL SPECIES	8	ENSGT00940000164278.d.a	ENSGT01030000234549.a.b.t.a	ENSGT00990000204711.a	ENSGT00940000165156.e	ENSGT00940000164729.a.b.g	ENSGT00390000002866.a.a	ENSGT00940000154323.a	ENSGT00940000160435.d	ENSGT00940000154152.b.b.a	ENSGT00950000182892.a.b.a.b.a.e #15	ENSGT00750000118756.a #17	ENSGT00390000011219.f #20	ENSGT00940000154534.b.b.e ##19	ENSGT00390000011219.e.a #20	ENSGT00390000000603 #21	ENSGT00940000157439.b.b #22	ENSGT00940000166447.a #23	ENSGT00940000153704.B.c.b.b #24	ENSGT00940000153704.B.c.b.a #24	ENSGT01030000234646.B.a.a.a.a.a.a #25	ENSGT00940000157411.b #26	ENSGT00390000008812.b.b.a.h #27	ENSGT00530000063301.a.a.c.a.i #28	ENSGT00390000005895.b	ENSGT00940000156819.a.b.c.a	ENSGT00940000159286.a.b.d.b	ENSGT00940000159664.c	ENSGT00960000186809	ENSGT00390000004836.b	ENSGT00940000155510.w	ENSGT00940000158142.d
Common carp reference	MODERN SPECIES	44	ENSCCRG00000074089	gabrz (ENSCCRG00000074636)	valopb (ENSCCRG00000018658)	gall (ENSCCRG00000038042)	ENSCCRG00000078530	ENSCCRG00000074365	znf668 (ENSCCRG00000038033)	ENSCCRG00000038032	ENSCCRG00000030924	cbx1b (ENSCCRG00000027598)	phkg2 (ENSCCRG00000031070)	ENSCCRG00000027591 #15	ENSCCRG00000062559 #17	pnpo (ENSCCRG00000073591) #20	prr15lb (ENSCCRG00000055334) ##19	osbpl7 (ENSCCRG00000027561) #22	tbx21 (ENSCCRG00000054449) #23	TBKBP1 (ENSCCRG00000082246) #24	ENSCCRG00000043201 #24	ENSCCRG00000027552 #25	ENSCCRG00000066588 #26	cdk5r1b (ENSCCRG00000069469) #27	psmd11b (ENSCCRG00000027594) #28	ogfod3 (ENSCCRG00000027554)	ENSCCRG00000027283	ENSCCRG00000082564	ENSCCRG00000023145	DHX8 (ENSCCRG00000021564)	etv4 (ENSCCRG00000075759)	meox1 (ENSCCRG00000056846)	SOST (ENSCCRG00000021463)
Golden-line barbel	MODERN SPECIES	887	gabrz (ENSSGRG00000047127)	valopb (ENSSGRG00000047125)	cd37 (ENSSGRG00000047122)	ENSSGRG00000047119	znf668 (ENSSGRG00000047115)	ENSSGRG00000047114	RNF40 (ENSSGRG00000046152)	ccdc189 (ENSSGRG00000046110)	cbx1b (ENSSGRG00000046102)	phkg2 (ENSSGRG00000046074)	NFE2L1 (ENSSGRG00000046100) #15	ENSSGRG00000046070 #18	prr15lb (ENSSGRG00000046068) ##19	pnpo (ENSSGRG00000046039) #20	mrpl10 (ENSSGRG00000046038) #21	osbpl7 (ENSSGRG00000046037) #22	tbx21 (ENSSGRG00000046036) #23
Goldfish	MODERN SPECIES	2288	bms1 (ENSCARG00000057803)	mxtx2 (ENSCARG00000057917)	ENSCARG00000057929	ENSCARG00000057938	gabrz (ENSCARG00000057947)	valopb (ENSCARG00000057974)	gall (ENSCARG00000058003)	znf668 (ENSCARG00000058027)	ENSCARG00000058046	RNF40 (ENSCARG00000058123)	phkg2 (ENSCARG00000058370)	cbx1b (ENSCARG00000058530)	NFE2L1 (ENSCARG00000058638) #15	prr15lb (ENSCARG00000058654) ##19	ENSCARG00000058662	osbpl7 (ENSCARG00000058721) #22	tbx21 (ENSCARG00000058837) #23	TBKBP1 (ENSCARG00000058853) #24	PDK2 (ENSCARG00000058980) #25	ENSCARG00000060553 #26	cdk5r1b (ENSCARG00000066257) #27	psmd11b (ENSCARG00000066262) #28	ogfod3 (ENSCARG00000066289)	ENSCARG00000066307
Zebrafish	MODERN SPECIES	3	cd37 (ENSDARG00000075515)	ENSDARG00000096721	ENSDARG00000086255	znf668 (ENSDARG00000025226)	ENSDARG00000061424	RNF40 (ENSDARG00000054201)	ccdc189 (ENSDARG00000096777)	phkg2 (ENSDARG00000054208)	cbx1b (ENSDARG00000054442)	nfe2l1b (ENSDARG00000076533) #15	ENSDARG00000096711 #17	cdk5rap3 (ENSDARG00000045092) #18	prr15lb (ENSDARG00000029308) ##19	pnpo (ENSDARG00000017612) #20	mrpl10 (ENSDARG00000045091) #21	osbpl7 (ENSDARG00000012981) #22	tbx21 (ENSDARG00000004473) #23	TBKBP1 (ENSDARG00000061473) #24	PDK2 (ENSDARG00000020876) #25	ENSDARG00000088794	MYO1D (ENSDARG00000036863) #26	cdk5r1b (ENSDARG00000045087) #27	psmd11b (ENSDARG00000005134) #28	ogfod3 (ENSDARG00000078481)	ENSDARG00000115189	ENSDARG00000009624	CACNA1G (ENSDARG00000089913)	SPATA20 (ENSDARG00000013880)	DHX8 (ENSDARG00000054707)	etv4 (ENSDARG00000018303)	meox1 (ENSDARG00000007891)
Euteleosteomorpha	ANCESTRAL SPECIES	101	ENSGT00390000005121	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Acanthomorphata	ANCESTRAL SPECIES	12	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Euacanthomorphacea	ANCESTRAL SPECIES	21	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Percomorphaceae	ANCESTRAL SPECIES	21	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Tiger tail seahorse	MODERN SPECIES	435	gnptg (ENSHCOG00000015474)	C7orf50 (ENSHCOG00000015488)	ENSHCOG00000015491	ENSHCOG00000015494	zgc:112185 (ENSHCOG00000015502)	anks3 (ENSHCOG00000015518)	wdr24 (ENSHCOG00000015542)	zgc:112496 (ENSHCOG00000015559)	rhbdl1 (ENSHCOG00000015572)	h1-0 (ENSHCOG00000000434)	rhot2 (ENSHCOG00000015642)	WDR90 (ENSHCOG00000015717)	GCGR (ENSHCOG00000015787)	pnpo (ENSHCOG00000015796) #20	mrpl10 (ENSHCOG00000015812) #21	osbpl7 (ENSHCOG00000015840) #22	tbx21 (ENSHCOG00000015961) #23	TBKBP1 (ENSHCOG00000015975) #24	PDK2 (ENSHCOG00000015994) #25	MYO1D (ENSHCOG00000016034) #26	cdk5r1b (ENSHCOG00000016046) #27	psmd11b (ENSHCOG00000016049) #28	nsfb (ENSHCOG00000016071) #30	wnt3 (ENSHCOG00000016086) #31	ormdl3 (ENSHCOG00000016104) #32	ENSHCOG00000016111	ENSHCOG00000016125	DHX8 (ENSHCOG00000016177)	ENSHCOG00000016197	msh2 (ENSHCOG00000016233)	gch2 (ENSHCOG00000016251)
Percomorphaceae_B	ANCESTRAL SPECIES	23	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000161108	ENSGT00940000158354.c.a #7	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000161108	ENSGT00940000158354.c.a #7	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Mangrove rivulus	MODERN SPECIES	312	MSL1 (ENSKMAG00000004344)	snf8 (ENSKMAG00000004361)	ENSKMAG00000004403	ENSKMAG00000004418	hoxb6b (ENSKMAG00000004436)	hoxb5b (ENSKMAG00000004447) #7	hoxb1b (ENSKMAG00000004470)	skap1 (ENSKMAG00000004481) #13	snx11 (ENSKMAG00000004499) #14	CBX1 (ENSKMAG00000004535)	NFE2L1 (ENSKMAG00000004568) #15	cdk5rap3 (ENSKMAG00000004629) #18	pnpo (ENSKMAG00000004647) #20	prr15lb (ENSKMAG00000004674) ##19	mrpl10 (ENSKMAG00000004688) #21	osbpl7 (ENSKMAG00000004714) #22	tbx21 (ENSKMAG00000004729) #23	TBKBP1 (ENSKMAG00000004750) #24
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015011457	ENSNFUG00015011466	ttll6 (ENSNFUG00015011481)	hoxb6b (ENSNFUG00015011489)	HOXB5 (ENSNFUG00015011504) #7	hoxb1b (ENSNFUG00015011511)	skap1 (ENSNFUG00015011524) #13	SNX11 (ENSNFUG00015011535) #14	ENSNFUG00015011541 #29	CBX1 (ENSNFUG00015011548)	NFE2L1 (ENSNFUG00015011571) #15	cdk5rap3 (ENSNFUG00015011585) #18	PRR15LB (ENSNFUG00015011613) ##19	PNPO (ENSNFUG00015011618) #20	MRPL10 (ENSNFUG00015011631) #21	osbpl7 (ENSNFUG00015011718) #22	tbx21 (ENSNFUG00015012575) #23	PDK2 (ENSNFUG00015012628) #25	MYO1D (ENSNFUG00015013217) #26	ENSNFUG00015013131	CDK5R1B (ENSNFUG00015013133) #27	PSMD11B (ENSNFUG00015013143) #28	nsfb (ENSNFUG00015013189) #30	WNT3 (ENSNFUG00015013372) #31	ORMDL3 (ENSNFUG00015013386) #32	ENSNFUG00015013394	ENSNFUG00015013421	DHX8 (ENSNFUG00015014267)	etv4 (ENSNFUG00015018587)	ENSNFUG00015018589	meox1 (ENSNFUG00015018591)
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00950000182832.A	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000161108	ENSGT00940000158354.c.a #7	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00950000182832.A	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000161108	ENSGT00940000158354.c.a #7	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Poecilia	ANCESTRAL SPECIES	15	ENSGT00950000182832.A	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000161108	ENSGT00940000158354.c.a #7	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
NAME_6	ANCESTRAL SPECIES		ENSGT00950000182832.A	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000161108	ENSGT00940000158354.c.a #7	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Amazon molly	MODERN SPECIES	259	ENSPFOG00000022457	ttll6 (ENSPFOG00000018186)	HOXB6 (ENSPFOG00000018177)	hoxb5b (ENSPFOG00000018167) #7	ENSPFOG00000018165 #9	hoxb1b (ENSPFOG00000018156)	skap1 (ENSPFOG00000018142) #13	SNX11 (ENSPFOG00000018135) #14	CBX1 (ENSPFOG00000023882)	CBX1 (ENSPFOG00000018123)	NFE2L1 (ENSPFOG00000018108) #15	cdk5rap3 (ENSPFOG00000018092) #18	prr15lb (ENSPFOG00000020448) ##19	pnpo (ENSPFOG00000018080) #20	mrpl10 (ENSPFOG00000018077) #21	osbpl7 (ENSPFOG00000018036) #22	tbx21 (ENSPFOG00000018019) #23	TBKBP1 (ENSPFOG00000017995) #24	PDK2 (ENSPFOG00000017978) #25	MYO1D (ENSPFOG00000017911) #26	cdk5r1b (ENSPFOG00000017899) #27	psmd11b (ENSPFOG00000017872) #28	nsfb (ENSPFOG00000017806) #30	wnt3 (ENSPFOG00000017788) #31	ormdl3 (ENSPFOG00000017787) #32	ENSPFOG00000017739	DHX8 (ENSPFOG00000017661)	etv4 (ENSPFOG00000017603)	meox1 (ENSPFOG00000017586)	SOST (ENSPFOG00000017584)	DUSP3 (ENSPFOG00000017577)
Sailfin molly	MODERN SPECIES	144	ENSPLAG00000020786	snf8 (ENSPLAG00000020826)	ENSPLAG00000020834	ENSPLAG00000020859	hoxb6a (ENSPLAG00000020898)	hoxb5b (ENSPLAG00000020912) #7	hoxb1b (ENSPLAG00000020919)	skap1 (ENSPLAG00000020957) #13	SNX11 (ENSPLAG00000020964) #14	CBX1 (ENSPLAG00000020985)	NFE2L1 (ENSPLAG00000000452) #15	cdk5rap3 (ENSPLAG00000021044) #18	prr15lb (ENSPLAG00000021056) ##19	pnpo (ENSPLAG00000021060) #20	mrpl10 (ENSPLAG00000021066) #21	osbpl7 (ENSPLAG00000021130) #22	tbx21 (ENSPLAG00000021142) #23	TBKBP1 (ENSPLAG00000021169) #24	PDK2 (ENSPLAG00000021198) #25
Guppy	MODERN SPECIES	449	MSL1 (ENSPREG00000013175)	snf8 (ENSPREG00000013140)	ENSPREG00000013120	ttll6 (ENSPREG00000013089)	HOXB6 (ENSPREG00000013067)	hoxb5b (ENSPREG00000013058) #7	ENSPREG00000013048 #9	skap1 (ENSPREG00000013030) #13	SNX11 (ENSPREG00000013016) #14	CBX1 (ENSPREG00000013005)	NFE2L1 (ENSPREG00000012983) #15	cdk5rap3 (ENSPREG00000012945) #18	prr15lb (ENSPREG00000012924) ##19	pnpo (ENSPREG00000012911) #20	mrpl10 (ENSPREG00000012907) #21	osbpl7 (ENSPREG00000012881) #22	tbx21 (ENSPREG00000012858) #23	TBKBP1 (ENSPREG00000012841) #24	PDK2 (ENSPREG00000012826) #25	MYO1D (ENSPREG00000012763) #26	cdk5r1b (ENSPREG00000012729) #27	psmd11b (ENSPREG00000012686) #28	nsfb (ENSPREG00000011963) #30	wnt3 (ENSPREG00000011860) #31	ormdl3 (ENSPREG00000011837) #32	ENSPREG00000011800	DHX8 (ENSPREG00000011752)	etv4 (ENSPREG00000011732)	meox1 (ENSPREG00000011721)	SOST (ENSPREG00000011706)	DUSP3 (ENSPREG00000011638)
Platyfish	MODERN SPECIES	1	ENSXMAG00000014902	snf8 (ENSXMAG00000027097)	ENSXMAG00000014917	ttll6 (ENSXMAG00000014927)	hoxb6a (ENSXMAG00000021318)	hoxb5b (ENSXMAG00000000077) #7	hoxb1b (ENSXMAG00000025601)	skap1 (ENSXMAG00000013728) #13	ENSXMAG00000029233 #14	CBX1 (ENSXMAG00000025560)	NFE2L1 (ENSXMAG00000029109) #15	cdk5rap3 (ENSXMAG00000013715) #18	prr15lb (ENSXMAG00000019768) ##19	pnpo (ENSXMAG00000013703) #20	mrpl10 (ENSXMAG00000013700) #21	osbpl7 (ENSXMAG00000013669) #22	tbx21 (ENSXMAG00000023411) #23	TBKBP1 (ENSXMAG00000013648) #24	PDK2 (ENSXMAG00000014954) #25	MYO1D (ENSXMAG00000017964) #26	cdk5r1b (ENSXMAG00000017963) #27	psmd11b (ENSXMAG00000017949) #28	nsfb (ENSXMAG00000017938) #30	wnt3 (ENSXMAG00000023933) #31	ormdl3 (ENSXMAG00000026826) #32	ENSXMAG00000017922	DHX8 (ENSXMAG00000017907)	etv4 (ENSXMAG00000021568)	meox1 (ENSXMAG00000017899)	SOST (ENSXMAG00000017896)	ENSXMAG00000022066
NAME_4	ANCESTRAL SPECIES	22	ENSGT00950000182832.A	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000161108	ENSGT00940000158354.c.a #7	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Sheepshead minnow	MODERN SPECIES	558	ENSCVAG00000012136	snf8 (ENSCVAG00000012190)	ENSCVAG00000012205	hoxb6b (ENSCVAG00000012214)	hoxb5b (ENSCVAG00000012223) #7	ENSCVAG00000012230 #9	hoxb1b (ENSCVAG00000012234)	skap1 (ENSCVAG00000012253) #13	ENSCVAG00000012258 #14	CBX1 (ENSCVAG00000012365)	NFE2L1 (ENSCVAG00000012423) #15	cdk5rap3 (ENSCVAG00000012484) #18	prr15lb (ENSCVAG00000012499) ##19	pnpo (ENSCVAG00000012510) #20	mrpl10 (ENSCVAG00000012527) #21	osbpl7 (ENSCVAG00000012671) #22	tbx21 (ENSCVAG00000012700) #23	TBKBP1 (ENSCVAG00000012726) #24	TBC1D22B (ENSCVAG00000012751)	ENSCVAG00000012758	snrpg (ENSCVAG00000012770)	plpbp (ENSCVAG00000012804)	tmed4 (ENSCVAG00000012820)	ikbkg (ENSCVAG00000012843)	sephs3 (ENSCVAG00000012883)	ap4b1 (ENSCVAG00000012893)	zgc:101663 (ENSCVAG00000012899)	ENSCVAG00000012916	ccnq (ENSCVAG00000012938)
Mummichog	MODERN SPECIES	2379	snf8 (ENSFHEG00000005620)	ENSFHEG00000005636	ttll6 (ENSFHEG00000005696)	HOXB6 (ENSFHEG00000000652)	hoxb5b (ENSFHEG00000005723) #7	ENSFHEG00000005735 #9	hoxb1b (ENSFHEG00000005746)	skap1 (ENSFHEG00000005784) #13	ENSFHEG00000005801 #14	CBX1 (ENSFHEG00000005820)	NFE2L1 (ENSFHEG00000005838) #15	cdk5rap3 (ENSFHEG00000005854) #18	prr15lb (ENSFHEG00000005875) ##19	pnpo (ENSFHEG00000005883) #20	mrpl10 (ENSFHEG00000005890) #21	osbpl7 (ENSFHEG00000006051) #22	tbx21 (ENSFHEG00000006090) #23	ENSFHEG00000006109	ENSFHEG00000006116 #24	PDK2 (ENSFHEG00000006204) #25	MYO1D (ENSFHEG00000006274) #26	cdk5r1b (ENSFHEG00000006302) #27	psmd11b (ENSFHEG00000006315) #28	nsfb (ENSFHEG00000000666) #30	wnt3 (ENSFHEG00000006433) #31	ormdl3 (ENSFHEG00000006451) #32
Oryzias	ANCESTRAL SPECIES	11	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000161341.a.a
Indian medaka	MODERN SPECIES	17	snf8 (ENSOMEG00000003554)	ENSOMEG00000003579	ttll6 (ENSOMEG00000003603)	hoxb6b (ENSOMEG00000003618)	hoxb5b (ENSOMEG00000003624) #7	hoxb1b (ENSOMEG00000003629)	ENSOMEG00000003640	skap1 (ENSOMEG00000003668) #13	ENSOMEG00000003715 #14	CBX1 (ENSOMEG00000003749)	NFE2L1 (ENSOMEG00000003764) #15	cdk5rap3 (ENSOMEG00000003828) #18	prr15lb (ENSOMEG00000003886) ##19	pnpo (ENSOMEG00000003897) #20	mrpl10 (ENSOMEG00000000741) #21	osbpl7 (ENSOMEG00000003960) #22	tbx21 (ENSOMEG00000003983) #23	TBKBP1 (ENSOMEG00000003994) #24	PDK2 (ENSOMEG00000004011) #25	MYO1D (ENSOMEG00000004037) #26	cdk5r1b (ENSOMEG00000004056) #27	psmd11b (ENSOMEG00000004102) #28	nsfb (ENSOMEG00000004128) #30	wnt3 (ENSOMEG00000004139) #31	ormdl3 (ENSOMEG00000004147) #32	ENSOMEG00000004168	DHX8 (ENSOMEG00000004222)	etv4 (ENSOMEG00000004264)	meox1 (ENSOMEG00000004270)	ENSOMEG00000004286	SOST (ENSOMEG00000004291)
Javanese ricefish	MODERN SPECIES	10	MSL1 (ENSOJAG00000016929)	snf8 (ENSOJAG00000016900)	ENSOJAG00000016884	hoxb6b (ENSOJAG00000016864)	hoxb5b (ENSOJAG00000016856) #7	ENSOJAG00000016852 #9	hoxb1b (ENSOJAG00000016844)	skap1 (ENSOJAG00000016831) #13	ENSOJAG00000016824 #14	CBX1 (ENSOJAG00000016801)	NFE2L1 (ENSOJAG00000016786) #15	cdk5rap3 (ENSOJAG00000016281) #18	prr15lb (ENSOJAG00000016240) ##19	pnpo (ENSOJAG00000016222) #20	mrpl10 (ENSOJAG00000016212) #21	osbpl7 (ENSOJAG00000015460) #22	tbx21 (ENSOJAG00000015381) #23	PDK2 (ENSOJAG00000014953) #25	MYO1D (ENSOJAG00000014526) #26	cdk5r1b (ENSOJAG00000014476) #27	psmd11b (ENSOJAG00000014369) #28	nsfb (ENSOJAG00000012430) #30	wnt3 (ENSOJAG00000012236) #31	ormdl3 (ENSOJAG00000012215) #32	ENSOJAG00000021568	arg1 (ENSOJAG00000021333)	ENSOJAG00000021267	ccdc57 (ENSOJAG00000021204)	ENSOJAG00000021191	hs3st3l (ENSOJAG00000021185)	dhrs7cb (ENSOJAG00000021177)
Oryzias_a	ANCESTRAL SPECIES	52	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Chinese medaka	MODERN SPECIES	216	MSL1 (ENSOSIG00000008535)	snf8 (ENSOSIG00000008562)	ENSOSIG00000008567	ttll6 (ENSOSIG00000008572)	hoxb6b (ENSOSIG00000008573)	ENSOSIG00000008588 #9	hoxb1b (ENSOSIG00000008590)	skap1 (ENSOSIG00000008602) #13	ENSOSIG00000008606 #14	cbx1b (ENSOSIG00000008611)	NFE2L1 (ENSOSIG00000008612) #15	cdk5rap3 (ENSOSIG00000008635) #18	prr15lb (ENSOSIG00000009374) ##19	pnpo (ENSOSIG00000009375) #20	mrpl10 (ENSOSIG00000009376) #21	osbpl7 (ENSOSIG00000009389) #22	tbx21 (ENSOSIG00000010324) #23	TBKBP1 (ENSOSIG00000010325) #24	PDK2 (ENSOSIG00000010337) #25	MYO1D (ENSOSIG00000011781) #26	cdk5r1b (ENSOSIG00000011787) #27	psmd11b (ENSOSIG00000011793) #28	nsfb (ENSOSIG00000011846) #30	wnt3 (ENSOSIG00000015776) #31	ormdl3 (ENSOSIG00000015780) #32	ENSOSIG00000015794	DHX8 (ENSOSIG00000016591)	etv4 (ENSOSIG00000016890)	meox1 (ENSOSIG00000016895)	SOST (ENSOSIG00000016896)	tmem106a (ENSOSIG00000016897)
Japanese Medaka HdrR	MODERN SPECIES	10	snf8 (ENSORLG00000012436)	ENSORLG00000012415	ttll6 (ENSORLG00000012392)	hoxb6b (ENSORLG00000012387)	hoxb5b (ENSORLG00000022001) #7	hoxb1b (ENSORLG00000012369)	ENSORLG00000012375 #9	skap1 (ENSORLG00000026407) #13	ENSORLG00000022773 #14	CBX1 (ENSORLG00000022226)	NFE2L1 (ENSORLG00000028161) #15	cdk5rap3 (ENSORLG00000012325) #18	prr15lb (ENSORLG00000012296) ##19	pnpo (ENSORLG00000029321) #20	mrpl10 (ENSORLG00000025561) #21	osbpl7 (ENSORLG00000012241) #22	tbx21 (ENSORLG00000026554) #23	ENSORLG00000024271	ENSORLG00000030262 #24	PDK2 (ENSORLG00000012173) #25	ENSORLG00000023453	MYO1D (ENSORLG00000012150) #26	cdk5r1b (ENSORLG00000012086) #27	psmd11b (ENSORLG00000012079) #28	nsfb (ENSORLG00000012044) #30	wnt3 (ENSORLG00000012027) #31	ormdl3 (ENSORLG00000027713) #32	ENSORLG00000025859	thra (ENSORLG00000012005)	DHX8 (ENSORLG00000011951)	etv4 (ENSORLG00000011909)
Ovalentaria_B	ANCESTRAL SPECIES	21	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00390000005121	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00390000005121	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00390000005121	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Haplochromini	ANCESTRAL SPECIES	17	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b.a ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Burton s mouthbrooder	MODERN SPECIES	274	snf8 (ENSHBUG00000004590)	ENSHBUG00000004631	ttll6 (ENSHBUG00000004655)	hoxb6b (ENSHBUG00000004692)	hoxb5b (ENSHBUG00000004673) #7	ENSHBUG00000004711 #9	hoxb1b (ENSHBUG00000004719)	skap1 (ENSHBUG00000004728) #13	ENSHBUG00000004737 #14	CBX1 (ENSHBUG00000004762)	NFE2L1 (ENSHBUG00000004784) #15	cdk5rap3 (ENSHBUG00000004839) #18	prr15lb (ENSHBUG00000004866) ##19	pnpo (ENSHBUG00000004889) #20	mrpl10 (ENSHBUG00000004903) #21	osbpl7 (ENSHBUG00000005121) #22	tbx21 (ENSHBUG00000005168) #23	TBKBP1 (ENSHBUG00000005232) #24	PDK2 (ENSHBUG00000005261) #25	ENSHBUG00000005271	MYO1D (ENSHBUG00000005330) #26	cdk5r1b (ENSHBUG00000005346) #27	psmd11b (ENSHBUG00000005413) #28	wnt3 (ENSHBUG00000000764) #31	nsfb (ENSHBUG00000005476) #30	ormdl3 (ENSHBUG00000005502) #32	ENSHBUG00000005555	DHX8 (ENSHBUG00000005644)	etv4 (ENSHBUG00000005707)	meox1 (ENSHBUG00000005729)	SOST (ENSHBUG00000005750)
Haplochromini_A	ANCESTRAL SPECIES	16	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b.a ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
P. nyererei	MODERN SPECIES	312	snf8 (ENSPNYG00000000564)	calcoco2 (ENSPNYG00000000594)	ENSPNYG00000000605	hoxb6b (ENSPNYG00000000614)	hoxb5b (ENSPNYG00000000625) #7	ENSPNYG00000000647 #9	hoxb1b (ENSPNYG00000000656)	skap1 (ENSPNYG00000000665) #13	ENSPNYG00000000701 #14	CBX1 (ENSPNYG00000000724)	NFE2L1 (ENSPNYG00000000746) #15	cdk5rap3 (ENSPNYG00000000768) #18	prr15lb (ENSPNYG00000000803) ##19	pnpo (ENSPNYG00000000822) #20	mrpl10 (ENSPNYG00000000847) #21	osbpl7 (ENSPNYG00000000854) #22	tbx21 (ENSPNYG00000000934) #23	TBKBP1 (ENSPNYG00000000967) #24	PDK2 (ENSPNYG00000001017) #25	ENSPNYG00000001065	MYO1D (ENSPNYG00000001082) #26	cdk5r1b (ENSPNYG00000001138) #27	psmd11b (ENSPNYG00000001168) #28	nsfb (ENSPNYG00000001221) #30	wnt3 (ENSPNYG00000001306) #31	ormdl3 (ENSPNYG00000001323) #32	ENSPNYG00000001343	DHX8 (ENSPNYG00000001365)	etv4 (ENSPNYG00000001425)	meox1 (ENSPNYG00000001478)	SOST (ENSPNYG00000001488)
Haplochromini_B	ANCESTRAL SPECIES	15	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b.a ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Zebra mbuna	MODERN SPECIES	1111	ttll6 (ENSMZEG00005008192)	hoxb6b (ENSMZEG00005008179)	hoxb5b (ENSMZEG00005008174) #7	ENSMZEG00005008164 #9	hoxb1b (ENSMZEG00005008160)	skap1 (ENSMZEG00005008137) #13	ENSMZEG00005008129 #14	CBX1 (ENSMZEG00005008108)	NFE2L1 (ENSMZEG00005008081) #15	cdk5rap3 (ENSMZEG00005008062) #18	prr15lb (ENSMZEG00005008046) ##19	pnpo (ENSMZEG00005008034) #20	prr15lb (ENSMZEG00005008031) ##19	pnpo (ENSMZEG00005008023) #20	mrpl10 (ENSMZEG00005008005) #21	osbpl7 (ENSMZEG00005007937) #22	tbx21 (ENSMZEG00005007904) #23	ENSMZEG00005007896	TBKBP1 (ENSMZEG00005007868) #24	PDK2 (ENSMZEG00005007834) #25	ENSMZEG00005007822	MYO1D (ENSMZEG00005007763) #26	cdk5r1b (ENSMZEG00005007741) #27	psmd11b (ENSMZEG00005007703) #28	nsfb (ENSMZEG00005007665) #30	wnt3 (ENSMZEG00005007648) #31	ormdl3 (ENSMZEG00005007633) #32	ENSMZEG00005007617	DHX8 (ENSMZEG00005007559)	etv4 (ENSMZEG00005007459)	meox1 (ENSMZEG00005007440)
Eastern happy	MODERN SPECIES	20	ENSACLG00000023837	ENSACLG00000023850	ENSACLG00000023856	hoxb6b (ENSACLG00000023871)	hoxb5b (ENSACLG00000023879) #7	ENSACLG00000023896	hoxb1b (ENSACLG00000023912)	skap1 (ENSACLG00000023934) #13	ENSACLG00000023959 #14	CBX1 (ENSACLG00000023967)	NFE2L1 (ENSACLG00000023997) #15	cdk5rap3 (ENSACLG00000024017) #18	prr15lb (ENSACLG00000024070) ##19	pnpo (ENSACLG00000024083) #20	mrpl10 (ENSACLG00000024106) #21	osbpl7 (ENSACLG00000024111) #22	tbx21 (ENSACLG00000024135) #23	TBKBP1 (ENSACLG00000024327) #24	PDK2 (ENSACLG00000024391) #25	ENSACLG00000024421	MYO1D (ENSACLG00000024433) #26	cdk5r1b (ENSACLG00000024490) #27	psmd11b (ENSACLG00000024496) #28	nsfb (ENSACLG00000024545) #30	wnt3 (ENSACLG00000024697) #31	ormdl3 (ENSACLG00000024712) #32	ENSACLG00000024723	DHX8 (ENSACLG00000024759)	etv4 (ENSACLG00000024826)	meox1 (ENSACLG00000024838)	SOST (ENSACLG00000024850)
Lyretail cichlid	MODERN SPECIES	317	snf8 (ENSNBRG00000023515)	ENSNBRG00000023509	ttll6 (ENSNBRG00000023500)	hoxb6b (ENSNBRG00000023493)	hoxb5b (ENSNBRG00000023488) #7	ENSNBRG00000023478 #9	hoxb1b (ENSNBRG00000023474)	skap1 (ENSNBRG00000023467) #13	ENSNBRG00000023453 #14	CBX1 (ENSNBRG00000023447)	NFE2L1 (ENSNBRG00000023442) #15	cdk5rap3 (ENSNBRG00000023398) #18	prr15lb (ENSNBRG00000023383) ##19	pnpo (ENSNBRG00000023371) #20	mrpl10 (ENSNBRG00000023367) #21	osbpl7 (ENSNBRG00000023360) #22	tbx21 (ENSNBRG00000023348) #23	TBKBP1 (ENSNBRG00000023332) #24	PDK2 (ENSNBRG00000023313) #25	ENSNBRG00000023304	MYO1D (ENSNBRG00000023297) #26	cdk5r1b (ENSNBRG00000023289) #27	psmd11b (ENSNBRG00000023279) #28	nsfb (ENSNBRG00000023269) #30	wnt3 (ENSNBRG00000023262) #31	ormdl3 (ENSNBRG00000023254) #32	ENSNBRG00000023244	DHX8 (ENSNBRG00000023205)	etv4 (ENSNBRG00000023116)	meox1 (ENSNBRG00000023086)	ENSNBRG00000023080
Nile tilapia	MODERN SPECIES	20	snf8 (ENSONIG00000018202)	ENSONIG00000018204	ttll6 (ENSONIG00000018205)	hoxb6b (ENSONIG00000036813)	hoxb5b (ENSONIG00000034578) #7	ENSONIG00000032613 #9	hoxb1b (ENSONIG00000018209)	skap1 (ENSONIG00000018210) #13	ENSONIG00000027588 #14	cbx1 (ENSONIG00000032457)	NFE2L1 (ENSONIG00000018214) #15	cdk5rap3 (ENSONIG00000018216) #18	prr15lb (ENSONIG00000021237) ##19	pnpo (ENSONIG00000018219) #20	mrpl10 (ENSONIG00000038469) #21	osbpl7 (ENSONIG00000018222) #22	tbx21 (ENSONIG00000018223) #23	PDK2 (ENSONIG00000018225) #25	MYO1D (ENSONIG00000018232) #26	ENSONIG00000032662	cdk5r1b (ENSONIG00000018237) #27	psmd11b (ENSONIG00000018238) #28	nsfb (ENSONIG00000018240) #30	wnt3 (ENSONIG00000027851) #31	ormdl3 (ENSONIG00000041840) #32	ENSONIG00000018247	DHX8 (ENSONIG00000018248)	etv4 (ENSONIG00000018249)	meox1 (ENSONIG00000018256)	sost (ENSONIG00000036894)	ENSONIG00000018260
Midas cichlid	MODERN SPECIES	113	snf8 (ENSACIG00000012289)	ENSACIG00000012308	ENSACIG00000012333	hoxb6b (ENSACIG00000012351)	hoxb5b (ENSACIG00000012365) #7	hoxb1b (ENSACIG00000012377)	skap1 (ENSACIG00000012394) #13	SNX11 (ENSACIG00000012442) #14	ENSACIG00000012501	CBX1 (ENSACIG00000012511)	NFE2L1 (ENSACIG00000012781) #15	cdk5rap3 (ENSACIG00000012797) #18	prr15lb (ENSACIG00000012821) ##19	pnpo (ENSACIG00000012840) #20	mrpl10 (ENSACIG00000012855) #21	osbpl7 (ENSACIG00000012891) #22	tbx21 (ENSACIG00000012923) #23	TBKBP1 (ENSACIG00000012942) #24	PDK2 (ENSACIG00000012967) #25	MYO1D (ENSACIG00000013002) #26	cdk5r1b (ENSACIG00000013056) #27	psmd11b (ENSACIG00000013064) #28	nsfb (ENSACIG00000013096) #30	wnt3 (ENSACIG00000013133) #31	ormdl3 (ENSACIG00000013146) #32	ENSACIG00000013155	DHX8 (ENSACIG00000013170)	etv4 (ENSACIG00000013230)	meox1 (ENSACIG00000013325)	SOST (ENSACIG00000013335)	ENSACIG00000013348
Pomacentridae	ANCESTRAL SPECIES	41	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159774 #9	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Pomacentridae_A	ANCESTRAL SPECIES	39	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159774 #9	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Amphiprion	ANCESTRAL SPECIES	59	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000004551	snf8 (ENSAPEG00000004571)	ENSAPEG00000004609	ttll6 (ENSAPEG00000004623)	hoxb6b (ENSAPEG00000004636)	hoxb5b (ENSAPEG00000004651) #7	hoxb1b (ENSAPEG00000004664)	skap1 (ENSAPEG00000004678) #13	ENSAPEG00000004721 #14	CBX1 (ENSAPEG00000004728)	NFE2L1 (ENSAPEG00000004752) #15	cdk5rap3 (ENSAPEG00000004768) #18	prr15lb (ENSAPEG00000004875) ##19	pnpo (ENSAPEG00000004906) #20	mrpl10 (ENSAPEG00000004939) #21	osbpl7 (ENSAPEG00000004960) #22	tbx21 (ENSAPEG00000005065) #23	TBKBP1 (ENSAPEG00000005081) #24	PDK2 (ENSAPEG00000005179) #25	MYO1D (ENSAPEG00000005253) #26	ENSAPEG00000005336	cdk5r1b (ENSAPEG00000005355) #27	psmd11b (ENSAPEG00000005372) #28	nsfb (ENSAPEG00000005478) #30	wnt3 (ENSAPEG00000005543) #31	ormdl3 (ENSAPEG00000005565) #32	ENSAPEG00000005621	DHX8 (ENSAPEG00000005641)	ENSAPEG00000005739	etv4 (ENSAPEG00000005761)	meox1 (ENSAPEG00000005786)
Clown anemonefish	MODERN SPECIES	3336	snf8 (ENSAOCG00000006926)	ENSAOCG00000006896	ttll6 (ENSAOCG00000006877)	ENSAOCG00000006862 #9	hoxb6b (ENSAOCG00000006852)	hoxb5b (ENSAOCG00000006841) #7	hoxb1b (ENSAOCG00000006832)	skap1 (ENSAOCG00000006822) #13	ENSAOCG00000006783 #14	CBX1 (ENSAOCG00000006769)	NFE2L1 (ENSAOCG00000006758) #15	cdk5rap3 (ENSAOCG00000000335) #18	prr15lb (ENSAOCG00000000326) ##19	pnpo (ENSAOCG00000006678) #20	mrpl10 (ENSAOCG00000006653) #21	osbpl7 (ENSAOCG00000006640) #22	tbx21 (ENSAOCG00000006562) #23
Spiny chromis	MODERN SPECIES	195	snf8 (ENSAPOG00000016218)	ENSAPOG00000016174	ttll6 (ENSAPOG00000016156)	hoxb6b (ENSAPOG00000016148)	hoxb5b (ENSAPOG00000016143) #7	ENSAPOG00000016130 #9	hoxb1b (ENSAPOG00000016123)	skap1 (ENSAPOG00000016103) #13	ENSAPOG00000001136 #14	CBX1 (ENSAPOG00000000707)	NFE2L1 (ENSAPOG00000015968) #15	cdk5rap3 (ENSAPOG00000015958) #18	prr15lb (ENSAPOG00000015904) ##19	pnpo (ENSAPOG00000015876) #20	mrpl10 (ENSAPOG00000015827) #21	osbpl7 (ENSAPOG00000015819) #22	tbx21 (ENSAPOG00000015726) #23	ENSAPOG00000015691 #24	PDK2 (ENSAPOG00000015675) #25	MYO1D (ENSAPOG00000015605) #26
Bicolor damselfish	MODERN SPECIES	343	snf8 (ENSSPAG00000001750)	ENSSPAG00000001780	ttll6 (ENSSPAG00000001805)	hoxb6b (ENSSPAG00000001854)	hoxb5b (ENSSPAG00000001894) #7	ENSSPAG00000001902 #9	hoxb1b (ENSSPAG00000001907)	skap1 (ENSSPAG00000001917) #13	ENSSPAG00000001931 #14	CBX1 (ENSSPAG00000001947)	NFE2L1 (ENSSPAG00000001968) #15	cdk5rap3 (ENSSPAG00000001987) #18	prr15lb (ENSSPAG00000002021) ##19	pnpo (ENSSPAG00000002030) #20	mrpl10 (ENSSPAG00000002058) #21	osbpl7 (ENSSPAG00000002079) #22	tbx21 (ENSSPAG00000002229) #23	TBKBP1 (ENSSPAG00000002245) #24	PDK2 (ENSSPAG00000002320) #25	MYO1D (ENSSPAG00000002348) #26
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Carangaria	ANCESTRAL SPECIES	13	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Seriola	ANCESTRAL SPECIES	1	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT00940000159842.pc.a.a.b.a.a	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Greater amberjack	MODERN SPECIES	27	snf8 (ENSSDUG00000009165)	ENSSDUG00000009198	ttll6 (ENSSDUG00000009245)	hoxb6b (ENSSDUG00000009288)	hoxb5b (ENSSDUG00000009329) #7	ENSSDUG00000009341 #9	hoxb1b (ENSSDUG00000009350)	skap1 (ENSSDUG00000009365) #13	ENSSDUG00000009484 #14	CBX1 (ENSSDUG00000009538)	NFE2L1 (ENSSDUG00000010077) #15	cdk5rap3 (ENSSDUG00000010099) #18	prr15lb (ENSSDUG00000010143) ##19	pnpo (ENSSDUG00000010163) #20	mrpl10 (ENSSDUG00000010218) #21	osbpl7 (ENSSDUG00000010251) #22	tbx21 (ENSSDUG00000010318) #23	TBKBP1 (ENSSDUG00000010348) #24	ENSSDUG00000010427	PDK2 (ENSSDUG00000010444) #25	MYO1D (ENSSDUG00000010486) #26	cdk5r1b (ENSSDUG00000010547) #27	psmd11b (ENSSDUG00000010564) #28	nsfb (ENSSDUG00000010622) #30	wnt3 (ENSSDUG00000010720) #31	ormdl3 (ENSSDUG00000010734) #32	ENSSDUG00000010747	DHX8 (ENSSDUG00000010774)	ENSSDUG00000010822	etv4 (ENSSDUG00000010855)	meox1 (ENSSDUG00000010898)
Yellowtail amberjack	MODERN SPECIES	2745	snf8 (ENSSLDG00000024098)	ENSSLDG00000024087	ENSSLDG00000024068	hoxb6b (ENSSLDG00000024060)	hoxb5b (ENSSLDG00000024056) #7	hoxb1b (ENSSLDG00000024047)	ENSSLDG00000024036 #9	skap1 (ENSSLDG00000023996) #13	ENSSLDG00000023984 #14	CBX1 (ENSSLDG00000023975)	NFE2L1 (ENSSLDG00000023957) #15	cdk5rap3 (ENSSLDG00000023933) #18	prr15lb (ENSSLDG00000023922) ##19	pnpo (ENSSLDG00000023906) #20	mrpl10 (ENSSLDG00000023900) #21	osbpl7 (ENSSLDG00000023859) #22	tbx21 (ENSSLDG00000023842) #23	TBKBP1 (ENSSLDG00000023814) #24	mibp2 (ENSSLDG00000023804)	PDK2 (ENSSLDG00000023784) #25	MYO1D (ENSSLDG00000023744) #26	cdk5r1b (ENSSLDG00000023731) #27	psmd11b (ENSSLDG00000023708) #28	nsfb (ENSSLDG00000023659) #30	wnt3 (ENSSLDG00000023653) #31	ormdl3 (ENSSLDG00000023647) #32	ENSSLDG00000023623	DHX8 (ENSSLDG00000023594)	ENSSLDG00000023277	etv4 (ENSSLDG00000023235)
Barramundi perch	MODERN SPECIES	143	snf8 (ENSLCAG00010014551)	ENSLCAG00010014542	ttll6 (ENSLCAG00010014537)	hoxb6b (ENSLCAG00010014534)	hoxb5b (ENSLCAG00010014531) #7	ENSLCAG00010014527	hoxb1b (ENSLCAG00010014523)	skap1 (ENSLCAG00010014518) #13	ENSLCAG00010014509 #14	CBX1 (ENSLCAG00010014494)	NFE2L1 (ENSLCAG00010014488) #15	cdk5rap3 (ENSLCAG00010014478) #18	prr15lb (ENSLCAG00010014473) ##19	pnpo (ENSLCAG00010014463) #20	mrpl10 (ENSLCAG00010014459) #21	osbpl7 (ENSLCAG00010014350) #22	tbx21 (ENSLCAG00010014324) #23	ENSLCAG00010014321 #24	PDK2 (ENSLCAG00010014074) #25	ENSLCAG00010014039	MYO1D (ENSLCAG00010014023) #26	cdk5r1b (ENSLCAG00010014014) #27	psmd11b (ENSLCAG00010013998) #28	nsfb (ENSLCAG00010013227) #30	wnt3 (ENSLCAG00010013080) #31	ormdl3 (ENSLCAG00010013074) #32
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Tongue sole	MODERN SPECIES	18	snf8 (ENSCSEG00000014625)	ENSCSEG00000014648	ENSCSEG00000014655	hoxb6b (ENSCSEG00000014662)	hoxb5b (ENSCSEG00000014667) #7	hoxb1b (ENSCSEG00000014673)	skap1 (ENSCSEG00000014680) #13	ENSCSEG00000014685	ENSCSEG00000014692 #14	CBX1 (ENSCSEG00000014701)	NFE2L1 (ENSCSEG00000014705) #15	cdk5rap3 (ENSCSEG00000014710) #18	prr15lb (ENSCSEG00000014716) ##19	pnpo (ENSCSEG00000014722) #20	mrpl10 (ENSCSEG00000014726) #21	osbpl7 (ENSCSEG00000014747) #22	tbx21 (ENSCSEG00000014775) #23	TBKBP1 (ENSCSEG00000014783) #24	PDK2 (ENSCSEG00000014796) #25	MYO1D (ENSCSEG00000014827) #26	cdk5r1b (ENSCSEG00000014872) #27	psmd11b (ENSCSEG00000014884) #28	nsfb (ENSCSEG00000014912) #30	wnt3 (ENSCSEG00000014940) #31	ormdl3 (ENSCSEG00000014961) #32	ENSCSEG00000014988	DHX8 (ENSCSEG00000015029)	etv4 (ENSCSEG00000015152)	meox1 (ENSCSEG00000015167)	SOST (ENSCSEG00000015193)	ENSCSEG00000015196
Turbot	MODERN SPECIES	9	ENSSMAG00000037850	ENSSMAG00000009587	ENSSMAG00000009561	ttll6 (ENSSMAG00000009549)	hoxb5b (ENSSMAG00000009522) #7	ENSSMAG00000009511 #9	hoxb1b (ENSSMAG00000009508)	skap1 (ENSSMAG00000009479) #13	ENSSMAG00000009467 #14	CBX1 (ENSSMAG00000009453)	NFE2L1 (ENSSMAG00000009430) #15	cdk5rap3 (ENSSMAG00000009389) #18	prr15lb (ENSSMAG00000009371) ##19	pnpo (ENSSMAG00000009382) #20	mrpl10 (ENSSMAG00000009358) #21	osbpl7 (ENSSMAG00000009287) #22	tbx21 (ENSSMAG00000009189) #23	TBKBP1 (ENSSMAG00000009169) #24	ENSSMAG00000009151 #25	ENSSMAG00000034152	ENSSMAG00000009144	ENSSMAG00000035920	ENSSMAG00000009096 #26	cdk5r1b (ENSSMAG00000009091) #27	psmd11b (ENSSMAG00000009060) #28	nsfb (ENSSMAG00000008968) #30	ENSSMAG00000008939 #31	ormdl3 (ENSSMAG00000030550) #32	ENSSMAG00000008835	DHX8 (ENSSMAG00000008607)	etv4 (ENSSMAG00000008436)
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000006922	ENSMAMG00000006906	ttll6 (ENSMAMG00000006872)	hoxb6b (ENSMAMG00000006860)	hoxb5b (ENSMAMG00000006854) #7	ENSMAMG00000006846 #9	hoxb1b (ENSMAMG00000006840)	skap1 (ENSMAMG00000006775) #13	ENSMAMG00000026591 #14	CBX1 (ENSMAMG00000006734)	NFE2L1 (ENSMAMG00000006690) #15	cdk5rap3 (ENSMAMG00000006672) #18	prr15lb (ENSMAMG00000006652) ##19	pnpo (ENSMAMG00000006642) #20	mrpl10 (ENSMAMG00000028052) #21	osbpl7 (ENSMAMG00000006572) #22	tbx21 (ENSMAMG00000024359) #23	TBKBP1 (ENSMAMG00000027920) #24	ENSMAMG00000006476 #25	ENSMAMG00000006436 #26	cdk5r1b (ENSMAMG00000006430) #27	psmd11b (ENSMAMG00000006403) #28	nsfb (ENSMAMG00000006372) #30	ENSMAMG00000006359 #31	ormdl3 (ENSMAMG00000025248) #32	ENSMAMG00000006296	DHX8 (ENSMAMG00000006195)	etv4 (ENSMAMG00000006127)	meox1 (ENSMAMG00000026178)	SOST (ENSMAMG00000006089)	ENSMAMG00000006064
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Siamese fighting fish	MODERN SPECIES	9	snf8 (ENSBSLG00000019958)	ENSBSLG00000019943	ttll6 (ENSBSLG00000019917)	hoxb6b (ENSBSLG00000019899)	hoxb5b (ENSBSLG00000019889) #7	ENSBSLG00000019883 #9	ENSBSLG00000019868 #12	skap1 (ENSBSLG00000019797) #13	SNX11 (ENSBSLG00000019527) #14	CBX1 (ENSBSLG00000019498)	NFE2L1 (ENSBSLG00000019484) #15	cdk5rap3 (ENSBSLG00000019290) #18	prr15lb (ENSBSLG00000019277) ##19	pnpo (ENSBSLG00000019268) #20	mrpl10 (ENSBSLG00000019251) #21	osbpl7 (ENSBSLG00000019101) #22	tbx21 (ENSBSLG00000019081) #23	TBKBP1 (ENSBSLG00000019065) #24	MYO1D (ENSBSLG00000017279) #26	cdk5r1b (ENSBSLG00000017180) #27	psmd11b (ENSBSLG00000016762) #28	nsfb (ENSBSLG00000015626) #30	wnt3 (ENSBSLG00000015504) #31	ormdl3 (ENSBSLG00000015492) #32	DHX8 (ENSBSLG00000014811)	etv4 (ENSBSLG00000014750)	meox1 (ENSBSLG00000014735)	SOST (ENSBSLG00000014728)	ENSBSLG00000014265	ENSBSLG00000014215	ENSBSLG00000014204
Climbing perch	MODERN SPECIES	10	ENSATEG00000026521	ENSATEG00000008631	ENSATEG00000008617	ttll6 (ENSATEG00000008546)	hoxb6b (ENSATEG00000008539)	hoxb5b (ENSATEG00000008526) #7	hoxb1b (ENSATEG00000008518)	skap1 (ENSATEG00000008510) #13	ENSATEG00000028495 #14	CBX1 (ENSATEG00000027720)	NFE2L1 (ENSATEG00000008441) #15	cdk5rap3 (ENSATEG00000008382) #18	prr15lb (ENSATEG00000008355) ##19	pnpo (ENSATEG00000008296) #20	mrpl10 (ENSATEG00000008279) #21	osbpl7 (ENSATEG00000008218) #22	tbx21 (ENSATEG00000026567) #23	TBKBP1 (ENSATEG00000008182) #24	ENSATEG00000008138 #25	ENSATEG00000008024 #26	cdk5r1b (ENSATEG00000007987) #27	psmd11b (ENSATEG00000007920) #28	nsfb (ENSATEG00000007835) #30	ENSATEG00000007808 #31	ormdl3 (ENSATEG00000026887) #32	ENSATEG00000007751	DHX8 (ENSATEG00000007660)	etv4 (ENSATEG00000007590)	meox1 (ENSATEG00000026435)	SOST (ENSATEG00000007558)	ENSATEG00000007522
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Tetraodontidae	ANCESTRAL SPECIES	23	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159774 #9	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b.j	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510.g.b	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Fugu	MODERN SPECIES		snf8 (ENSTRUG00000011822)	ENSTRUG00000011902	ttll6 (ENSTRUG00000011934)	hoxb6b (ENSTRUG00000011945)	hoxb5b (ENSTRUG00000025198) #7	ENSTRUG00000030786 #9	ENSTRUG00000012061	skap1 (ENSTRUG00000026027) #13	CBX1 (ENSTRUG00000012203)	ENSTRUG00000012171 #14	NFE2L1 (ENSTRUG00000012259) #15	cdk5rap3 (ENSTRUG00000012311) #18	prr15lb (ENSTRUG00000012473) ##19	pnpo (ENSTRUG00000012477) #20	Mrpl10 (ENSTRUG00000020176) #21	osbpl7 (ENSTRUG00000012593) #22	tbx21 (ENSTRUG00000012995) #23	TBKBP1 (ENSTRUG00000013045) #24	PDK2 (ENSTRUG00000013086) #25	ENSTRUG00000013295	MYO1D (ENSTRUG00000013296) #26	cdk5r1b (ENSTRUG00000001984) #27	psmd11b (ENSTRUG00000002031) #28	wnt3 (ENSTRUG00000003564) #31	nsfb (ENSTRUG00000002989) #30	ormdl3 (ENSTRUG00000033478) #32	ENSTRUG00000004063	etv4 (ENSTRUG00000004727)	meox1 (ENSTRUG00000005193)	ENSTRUG00000003867	ENSTRUG00000005294
Tetraodon	MODERN SPECIES	13	chmp2a (ENSTNIG00000010089)	MSL1 (ENSTNIG00000010090)	snf8 (ENSTNIG00000010091)	ttll6 (ENSTNIG00000010092)	hoxb6b (ENSTNIG00000001771)	hoxb5b (ENSTNIG00000001770) #7	ENSTNIG00000010093 #9	hoxb1b (ENSTNIG00000010094)	skap1 (ENSTNIG00000010095) #13	ENSTNIG00000010096 #14	CBX1 (ENSTNIG00000010097)	NFE2L1 (ENSTNIG00000010098) #15	cdk5rap3 (ENSTNIG00000010099) #18	pnpo (ENSTNIG00000010100) #20	mrpl10 (ENSTNIG00000010101) #21	osbpl7 (ENSTNIG00000010102) #22	tbx21 (ENSTNIG00000010103) #23	TBKBP1 (ENSTNIG00000016965) #24	PDK2 (ENSTNIG00000016966) #25	ENSTNIG00000016967	ENSTNIG00000019512 #26	MYO1D (ENSTNIG00000019513) #26	psmd11b (ENSTNIG00000006061) #28	nsfb (ENSTNIG00000006062) #30	wnt3 (ENSTNIG00000006063) #31	ENSTNIG00000003353	ENSTNIG00000006979	psmd11b (ENSTNIG00000004136) #28	cdk5r1b (ENSTNIG00000004135) #27	etv4 (ENSTNIG00000004134)	meox1 (ENSTNIG00000014406)
Eupecaria_A	ANCESTRAL SPECIES	22	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Ballan wrasse	MODERN SPECIES	344	snf8 (ENSLBEG00000009676)	ENSLBEG00000009732	ttll6 (ENSLBEG00000009760)	hoxb6b (ENSLBEG00000009789)	hoxb5b (ENSLBEG00000009819) #7	ENSLBEG00000009839 #9	hoxb1b (ENSLBEG00000009870)	skap1 (ENSLBEG00000009887) #13	SNX11 (ENSLBEG00000009957) #14	CBX1 (ENSLBEG00000010074)	NFE2L1 (ENSLBEG00000010104) #15	cdk5rap3 (ENSLBEG00000010206) #18	prr15lb (ENSLBEG00000010458) ##19	pnpo (ENSLBEG00000010484) #20	mrpl10 (ENSLBEG00000010523) #21	osbpl7 (ENSLBEG00000010551) #22	tbx21 (ENSLBEG00000010629) #23	TBKBP1 (ENSLBEG00000010668) #24	PDK2 (ENSLBEG00000010710) #25	ENSLBEG00000010776
Eupecaria_B	ANCESTRAL SPECIES	22	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Perciformes	ANCESTRAL SPECIES	9	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Pike perch	MODERN SPECIES	3	chmp2a (ENSSLUG00000005899)	ENSSLUG00000005920	snf8 (ENSSLUG00000005937)	ENSSLUG00000005953	ttll6 (ENSSLUG00000005974)	hoxb6b (ENSSLUG00000005997)	hoxb1b (ENSSLUG00000006012)	skap1 (ENSSLUG00000006020) #13	ENSSLUG00000006030 #14	CBX1 (ENSSLUG00000006036)	NFE2L1 (ENSSLUG00000006038) #15	cdk5rap3 (ENSSLUG00000006108) #18	prr15lb (ENSSLUG00000007352) ##19	pnpo (ENSSLUG00000007364) #20	mrpl10 (ENSSLUG00000007379) #21	osbpl7 (ENSSLUG00000007402) #22	tbx21 (ENSSLUG00000007445) #23	TBKBP1 (ENSSLUG00000007453) #24	PDK2 (ENSSLUG00000007518) #25	MYO1D (ENSSLUG00000007767) #26	cdk5r1b (ENSSLUG00000007967) #27	psmd11b (ENSSLUG00000007981) #28	nsfb (ENSSLUG00000008134) #30	wnt3 (ENSSLUG00000010232) #31	ormdl3 (ENSSLUG00000010244) #32	ENSSLUG00000010297	DHX8 (ENSSLUG00000010748)	ENSSLUG00000011530	etv4 (ENSSLUG00000011765)	meox1 (ENSSLUG00000011772)	SOST (ENSSLUG00000011779)
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000019365	ttll6 (ENSCGOG00000019369)	hoxb6b (ENSCGOG00000019374)	hoxb5b (ENSCGOG00000019378) #7	ENSCGOG00000019380 #9	hoxb1b (ENSCGOG00000019381)	skap1 (ENSCGOG00000019383) #13	ENSCGOG00000019386	SNX11 (ENSCGOG00000019387) #14	cbx1b (ENSCGOG00000019414)	NFE2L1 (ENSCGOG00000019422) #15	cdk5rap3 (ENSCGOG00000019441) #18	prr15lb (ENSCGOG00000019655) ##19	pnpo (ENSCGOG00000019656) #20	mrpl10 (ENSCGOG00000019660) #21	osbpl7 (ENSCGOG00000019665) #22	tbx21 (ENSCGOG00000019907) #23	TBKBP1 (ENSCGOG00000019915) #24	ENSCGOG00000019917 #24	PDK2 (ENSCGOG00000019925) #25	MYO1D (ENSCGOG00000020276) #26	cdk5r1b (ENSCGOG00000021276) #27	psmd11b (ENSCGOG00000021286) #28	nsfb (ENSCGOG00000021447) #30	wnt3 (ENSCGOG00000021819) #31	ormdl3 (ENSCGOG00000021821) #32	ENSCGOG00000021848	DHX8 (ENSCGOG00000021929)	etv4 (ENSCGOG00000022471)	meox1 (ENSCGOG00000022473)	SOST (ENSCGOG00000022474)
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00390000018292.c	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612	ENSGT00940000161341.a.a	ENSGT00940000166248.a
Stickleback	MODERN SPECIES	5	MSL1 (ENSGACG00000003985)	snf8 (ENSGACG00000003963)	ENSGACG00000003954	ttll6 (ENSGACG00000003950)	hoxb5b (ENSGACG00000003945) #7	ENSGACG00000003942 #9	ENSGACG00000003939 #12	skap1 (ENSGACG00000003929) #13	SNX11 (ENSGACG00000003925) #14	CBX1 (ENSGACG00000003918)	NFE2L1 (ENSGACG00000003904) #15	cdk5rap3 (ENSGACG00000003875) #18	prr15lb (ENSGACG00000003873) ##19	pnpo (ENSGACG00000003855) #20	mrpl10 (ENSGACG00000003841) #21	osbpl7 (ENSGACG00000003833) #22	tbx21 (ENSGACG00000003829) #23	TBKBP1 (ENSGACG00000003822) #24	PDK2 (ENSGACG00000003817) #25	MYO1D (ENSGACG00000003807) #26	ENSGACG00000003806	cdk5r1b (ENSGACG00000003801) #27	psmd11b (ENSGACG00000003795) #28	nsfb (ENSGACG00000003786) #30	wnt3 (ENSGACG00000003779) #31	ormdl3 (ENSGACG00000003772) #32	ENSGACG00000003766	DHX8 (ENSGACG00000003750)	ENSGACG00000003736	etv4 (ENSGACG00000003724)	meox1 (ENSGACG00000003722)
Lumpfish	MODERN SPECIES	10	snf8 (ENSCLMG00005023006)	ENSCLMG00005023005	ENSCLMG00005023004	ENSCLMG00005023003	hoxb6b (ENSCLMG00005023001)	hoxb5b (ENSCLMG00005023000) #7	hoxb1b (ENSCLMG00005022999)	skap1 (ENSCLMG00005022997) #13	ENSCLMG00005022996 #14	CBX1 (ENSCLMG00005022995)	NFE2L1 (ENSCLMG00005022992) #15	cdk5rap3 (ENSCLMG00005022988) #18	prr15lb (ENSCLMG00005022983) ##19	pnpo (ENSCLMG00005022981) #20	mrpl10 (ENSCLMG00005022979) #21	osbpl7 (ENSCLMG00005022976) #22	tbx21 (ENSCLMG00005022975) #23	PDK2 (ENSCLMG00005022960) #25	MYO1D (ENSCLMG00005022935) #26	cdk5r1b (ENSCLMG00005022932) #27	psmd11b (ENSCLMG00005022930) #28	nsfb (ENSCLMG00005022864) #30	wnt3 (ENSCLMG00005022851) #31	ormdl3 (ENSCLMG00005022850) #32	ENSCLMG00005022848	DHX8 (ENSCLMG00005022652)	meox1 (ENSCLMG00005022631)	SOST (ENSCLMG00005022630)	DUSP3 (ENSCLMG00005022628)	arl4d (ENSCLMG00005022626)	tmem106a (ENSCLMG00005022623)
Eupecaria_C	ANCESTRAL SPECIES	23	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612
Gilthead seabream	MODERN SPECIES	12	snf8 (ENSSAUG00010016854)	ENSSAUG00010016858	ttll6 (ENSSAUG00010016862)	hoxb6b (ENSSAUG00010016881)	hoxb5b (ENSSAUG00010016882) #7	ENSSAUG00010016884 #9	hoxb1b (ENSSAUG00010016886)	skap1 (ENSSAUG00010016888) #13	ENSSAUG00010016891 #14	CBX1 (ENSSAUG00010016894)	NFE2L1 (ENSSAUG00010016897) #15	cdk5rap3 (ENSSAUG00010016901) #18	prr15lb (ENSSAUG00010017220) ##19	pnpo (ENSSAUG00010017223) #20	mrpl10 (ENSSAUG00010017224) #21	osbpl7 (ENSSAUG00010017241) #22	tbx21 (ENSSAUG00010017639) #23	TBKBP1 (ENSSAUG00010017641) #24	PDK2 (ENSSAUG00010017649) #25	MYO1D (ENSSAUG00010018393) #26	psmd11b (ENSSAUG00010021008) #28	nsfb (ENSSAUG00010021013) #30	wnt3 (ENSSAUG00010021075) #31	ormdl3 (ENSSAUG00010021079) #32	ENSSAUG00010021095	DHX8 (ENSSAUG00010021438)	etv4 (ENSSAUG00010021764)	meox1 (ENSSAUG00010021768)	SOST (ENSSAUG00010021771)	DUSP3 (ENSSAUG00010021774)	arl4d (ENSSAUG00010021776)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	27	ENSGT00940000177404	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000165065.b	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.b	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000162682.B.a
Large yellow croaker	MODERN SPECIES	488	ENSLCRG00005021627	ttll6 (ENSLCRG00005021621)	hoxb6b (ENSLCRG00005021618)	hoxb5b (ENSLCRG00005021615) #7	ENSLCRG00005021611 #12	ENSLCRG00005021608	skap1 (ENSLCRG00005021605) #13	ENSLCRG00005021604 #14	CBX1 (ENSLCRG00005021602)	NFE2L1 (ENSLCRG00005021600) #15	ENSLCRG00005021596	cdk5rap3 (ENSLCRG00005021579) #18	prr15lb (ENSLCRG00005021577) ##19	pnpo (ENSLCRG00005021575) #20	mrpl10 (ENSLCRG00005021573) #21	osbpl7 (ENSLCRG00005021566) #22	tbx21 (ENSLCRG00005021564) #23	TBKBP1 (ENSLCRG00005021562) #24	PDK2 (ENSLCRG00005021308) #25	MYO1D (ENSLCRG00005020222) #26	cdk5r1b (ENSLCRG00005020192) #27	psmd11b (ENSLCRG00005020186) #28	nsfb (ENSLCRG00005019982) #30	wnt3 (ENSLCRG00005019977) #31	ormdl3 (ENSLCRG00005019976) #32	ENSLCRG00005019915	DHX8 (ENSLCRG00005019699)	etv4 (ENSLCRG00005019691)	meox1 (ENSLCRG00005019689)	SOST (ENSLCRG00005019685)	ENSLCRG00005019683
European seabass	MODERN SPECIES	11	ENSDLAG00005028069	ENSDLAG00005031472	ENSDLAG00005024408	ttll6 (ENSDLAG00005024402)	hoxb6b (ENSDLAG00005024398)	hoxb5b (ENSDLAG00005024397) #7	HOXB1B (ENSDLAG00005027264)	skap1 (ENSDLAG00005024386) #13	ENSDLAG00005024382 #14	CBX1 (ENSDLAG00005032953)	NFE2L1 (ENSDLAG00005024374) #15	cdk5rap3 (ENSDLAG00005024327) #18	prr15lb (ENSDLAG00005024323) ##19	PNPO (ENSDLAG00005028589) #20	mrpl10 (ENSDLAG00005024317) #21	osbpl7 (ENSDLAG00005023883) #22	tbx21 (ENSDLAG00005028790) #23	TBKBP1 (ENSDLAG00005023823) #24	PDK2 (ENSDLAG00005023763) #25	ENSDLAG00005023075 #26	cdk5r1b (ENSDLAG00005033472) #27	psmd11b (ENSDLAG00005023007) #28	nsfb (ENSDLAG00005022119) #30	ENSDLAG00005022067 #31	ORMDL3 (ENSDLAG00005028232) #32	ENSDLAG00005021583	DHX8 (ENSDLAG00005021007)	etv4 (ENSDLAG00005020978)	meox1 (ENSDLAG00005020975)	SOST (ENSDLAG00005033789)	ENSDLAG00005033736
Pinecone sodierfish	MODERN SPECIES	10	ENSMMDG00005005117	snf8 (ENSMMDG00005005122)	calcoco2 (ENSMMDG00005005132)	ttll6 (ENSMMDG00005005139)	hoxb6b (ENSMMDG00005005148)	ENSMMDG00005005152	hoxb1b (ENSMMDG00005005153)	skap1 (ENSMMDG00005005155) #13	ENSMMDG00005005159 #14	CBX1 (ENSMMDG00005005163)	NFE2L1 (ENSMMDG00005005166) #15	cdk5rap3 (ENSMMDG00005005179) #18	prr15lb (ENSMMDG00005005803) ##19	pnpo (ENSMMDG00005005812) #20	mrpl10 (ENSMMDG00005005826) #21	osbpl7 (ENSMMDG00005005835) #22	tbx21 (ENSMMDG00005005843) #23	ENSMMDG00005005852 #24	PDK2 (ENSMMDG00005005899) #25	ENSMMDG00005006517	MYO1D (ENSMMDG00005006560) #26	cdk5r1b (ENSMMDG00005009918) #27	psmd11b (ENSMMDG00005009924) #28	nsfb (ENSMMDG00005010010) #30	wnt3 (ENSMMDG00005013783) #31	ormdl3 (ENSMMDG00005013793) #32	THRA (ENSMMDG00005013831)	DHX8 (ENSMMDG00005016578)	etv4 (ENSMMDG00005017257)	meox1 (ENSMMDG00005017259)	SOST (ENSMMDG00005017264)
Cod	MODERN SPECIES	9	ENSGMOG00000036982	ENSGMOG00000001460	ENSGMOG00000035922	ENSGMOG00000017330	vkorc1 (ENSGMOG00000009953)	mapk7 (ENSGMOG00000031595)	zgc:92313 (ENSGMOG00000036940)	ENSGMOG00000007260	ENSGMOG00000007269	ca15b (ENSGMOG00000006635)	ENSGMOG00000022620	ENSGMOG00000002392	ENSGMOG00000035324	ENSGMOG00000022764	ENSGMOG00000022482	osbpl7 (ENSGMOG00000001971) #22	tbx21 (ENSGMOG00000025536) #23	ENSGMOG00000025195 #24	ENSGMOG00000003034 #25	ENSGMOG00000012703 #26	ENSGMOG00000029400 #32	ENSGMOG00000016130	ENSGMOG00000016093	ENSGMOG00000036575	ENSGMOG00000031985	ENSGMOG00000030497	ENSGMOG00000023037	ENSGMOG00000017628	ENSGMOG00000022675	ENSGMOG00000036931	ENSGMOG00000019493
Protacanthopterygii	ANCESTRAL SPECIES	100	ENSGT00390000005121	ENSGT00390000007843	ENSGT00950000183025.a	ENSGT00940000165637	ENSGT00940000158354.c.a #7	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.a.a	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a.a #27	ENSGT00530000063301.a.a.c.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32	ENSGT00940000157917.a.a.a	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	299	ENSGT00950000182832.A.c	ENSGT00390000018292.c.c	ENSGT00390000005121	ENSGT00390000007843.d	ENSGT00950000183025.a.db	ENSGT00940000161434	ENSGT00940000165065.b.c	ENSGT00940000158354.c.a.c #7	ENSGT01000000220463	ENSGT00390000017856.b.c #13	ENSGT00940000160113.k #14	ENSGT00940000154152.a.a.a	ENSGT00950000182892.a.b.a.b.a.c #15	ENSGT00390000011219.m.b #20	ENSGT00940000172406	ENSGT00940000157439.b.c #22	ENSGT00940000166447.d #23	ENSGT00940000153704.B.c.d #24	ENSGT00940000157411.i #26	ENSGT00390000008812.b.b.a.a.a #27	ENSGT00530000063301.a.a.c.a.e #28
Salmoninae_a	ANCESTRAL SPECIES	45	ENSGT00950000182832.A.c	ENSGT00390000018292.c.c	ENSGT00390000005121.e	ENSGT00390000007843.d	ENSGT00950000183025.a.db	ENSGT00940000165065.b.c	ENSGT00940000158354.c.a.c #7	ENSGT00940000159774.d.b #9	ENSGT01000000221647	ENSGT00390000017856.b.c #13	ENSGT00940000160113.k #14	ENSGT00940000154152.a.a.a	ENSGT00950000182892.a.b.a.b.a.c #15	ENSGT00390000011219.m.b #20	ENSGT00940000172406	ENSGT00940000157439.b.c #22	ENSGT00940000166447.d #23	ENSGT00940000153704.B.c.d #24	ENSGT00940000157411.i #26	ENSGT00390000008812.b.b.a.a.a #27	ENSGT00530000063301.a.a.c.a.e #28	ENSGT00530000064085.c.c #30	ENSGT00940000157854.w.a #31	ENSGT00950000183178.b.b.b.c.b #32	ENSGT00940000157917.a.a.a.b	ENSGT00940000155510.u.a.a	ENSGT00940000155510.u.a.b	ENSGT00940000158142.f	ENSGT00940000154018.a.a	ENSGT00390000014900.b.b.b.a	ENSGT00940000162682.B.a.b
Salmo	ANCESTRAL SPECIES	31	ENSGT00940000161032.h	ENSGT00950000182832.A.c	ENSGT00390000018292.c.c	ENSGT00390000005121.e	ENSGT00390000007843.d	ENSGT00950000183025.a.db	ENSGT00940000165065.b.c	ENSGT00940000158354.c.a.c #7	ENSGT01000000221647	ENSGT00390000017856.b.c #13	ENSGT00940000160113.k #14	ENSGT00940000154152.a.a.a	ENSGT00950000182892.a.b.a.b.a.c #15	ENSGT00390000011219.m.b #20	ENSGT00940000172406	ENSGT00940000157439.b.c #22	ENSGT00940000166447.d #23	ENSGT00940000153704.B.c.d #24	ENSGT00940000157411.i #26	ENSGT00390000008812.b.b.a.a.a #27	ENSGT00530000063301.a.a.c.a.e #28	ENSGT00530000064085.c.c #30	ENSGT00940000157854.w.a #31	ENSGT00950000183178.b.b.b.c.b #32	ENSGT00940000157917.a.a.a.b	ENSGT00940000155510.u.a.a	ENSGT00940000155510.u.a.b	ENSGT00940000158142.f	ENSGT00940000154018.a.a	ENSGT00390000014900.b.b.b.a	ENSGT00940000162682.B.a.b
Atlantic salmon	MODERN SPECIES	20	ENSSSAG00000065326	ENSSSAG00000041484	ENSSSAG00000066449	ENSSSAG00000066478	chmp2a (ENSSSAG00000066490)	Hampin (ENSSSAG00000066494)	ENSSSAG00000101753	ENSSSAG00000066515	ENSSSAG00000085163	SKAP1 (ENSSSAG00000066533) #13	ENSSSAG00000066541 #14	ENSSSAG00000066552	NFE2L1 (ENSSSAG00000095440) #15	pnpo (ENSSSAG00000066572) #20	ENSSSAG00000066622	osbpl7 (ENSSSAG00000066660) #22	tbx21 (ENSSSAG00000067359) #23	TBKBP1 (ENSSSAG00000015313) #24	ENSSSAG00000067488 #26	ENSSSAG00000096896	cdk5r1b (ENSSSAG00000102378) #27	psmd11b (ENSSSAG00000072465) #28	nsfb (ENSSSAG00000072516) #30	wnt3 (ENSSSAG00000105288) #31	ENSSSAG00000074396	ormdl3 (ENSSSAG00000098798) #32	ENSSSAG00000107678	ENSSSAG00000093701	DHX8 (ENSSSAG00000075492)	etv4 (ENSSSAG00000076063)	DHX8 (ENSSSAG00000113538)
River trout	MODERN SPECIES	1	gip (ENSSTUG00000012308)	snf8 (ENSSTUG00000012321)	calcoco2 (ENSSTUG00000012356)	ENSSTUG00000012562	hoxb6b (ENSSTUG00000012576)	HOXB5 (ENSSTUG00000012584) #7	ENSSTUG00000012597	skap1 (ENSSTUG00000012671) #13	ENSSTUG00000012696 #14	ENSSTUG00000012731	NFE2L1 (ENSSTUG00000012743) #15	ENSSTUG00000012748	ENSSTUG00000012752	pnpo (ENSSTUG00000012768) #20	ENSSTUG00000012884	osbpl7 (ENSSTUG00000012941) #22	tbx21 (ENSSTUG00000012960) #23	TBKBP1 (ENSSTUG00000012972) #24	MYO1D (ENSSTUG00000013020) #26	cdk5r1b (ENSSTUG00000013467) #27	psmd11b (ENSSTUG00000000973) #28	nsfb (ENSSTUG00000001411) #30	wnt3 (ENSSTUG00000005517) #31	ormdl3 (ENSSTUG00000005562) #32	THRA (ENSSTUG00000005628)	DHX8 (ENSSTUG00000006798)	etv4 (ENSSTUG00000007794)	meox1 (ENSSTUG00000007839)	ENSSTUG00000007847	SOST (ENSSTUG00000007854)	ENSSTUG00000007862
Oncorhynchus	ANCESTRAL SPECIES	63	ENSGT00390000018292.c.c	ENSGT00940000177404.b	ENSGT00390000007843.d	ENSGT00950000183025.a.db	ENSGT00940000165065.b.c	ENSGT00940000158354.c.a.c #7	ENSGT01000000220463	ENSGT01000000221647	ENSGT00390000017856.b.c #13	ENSGT00940000160113.k #14	ENSGT00940000154152.a.a.a	ENSGT00950000182892.a.b.a.b.a.c #15	ENSGT00940000154534.b.b.d ##19	ENSGT00390000011219.m.b #20	ENSGT00940000172406	ENSGT00940000157439.b.c #22	ENSGT00940000166447.d #23	ENSGT00940000153704.B.c.d #24	ENSGT00940000157411.i #26	ENSGT00390000008812.b.b.a.a.a #27	ENSGT00530000063301.a.a.c.a.e #28	ENSGT00530000064085.c.c #30	ENSGT00940000157854.w.a #31	ENSGT00950000183178.b.b.b.c.b #32	ENSGT00940000157917.a.a.a.b	ENSGT00940000155510.u.a.a	ENSGT00940000155510.u.a.b	ENSGT00940000158142.f	ENSGT00940000154018.a.a	ENSGT00940000154852.a.e	ENSGT00530000066748.d
Oncorhynchus_a	ANCESTRAL SPECIES	69	ENSGT00950000182832.A.c	ENSGT00390000018292.c.c	ENSGT00940000177404.b	ENSGT00390000007843.d	ENSGT00950000183025.a.db	ENSGT00940000165065.b.c	ENSGT00940000158354.c.a.c #7	ENSGT01000000220463	ENSGT01000000221647	ENSGT00390000017856.b.c #13	ENSGT00940000160113.k #14	ENSGT00940000154152.a.a.a	ENSGT00950000182892.a.b.a.b.a.c #15	ENSGT00940000154534.b.b.d ##19	ENSGT00390000011219.m.b #20	ENSGT00940000157439.b.c #22	ENSGT00940000166447.d #23	ENSGT00940000153704.B.c.d #24	ENSGT00940000157411.i #26	ENSGT00390000008812.b.b.a.a.a #27	ENSGT00530000063301.a.a.c.a.e #28	ENSGT00530000064085.c.c #30	ENSGT00940000157854.w.a #31	ENSGT00950000183178.b.b.b.c.b #32	ENSGT00940000157917.a.a.a.b	ENSGT00940000155510.u.a.a	ENSGT00940000155510.u.a.b	ENSGT00940000158142.f	ENSGT00940000154018.a.a	ENSGT00940000154852.a.e	ENSGT00530000066748.d
Chinook salmon	MODERN SPECIES	17	chmp2a (ENSOTSG00005046243)	MSL1 (ENSOTSG00005046244)	ENSOTSG00005046246	snf8 (ENSOTSG00005046249)	ENSOTSG00005046252	hoxb6b (ENSOTSG00005046258)	hoxb5b (ENSOTSG00005046260) #7	ENSOTSG00005046262	ENSOTSG00005046264	skap1 (ENSOTSG00005046281) #13	ENSOTSG00005046283 #14	ENSOTSG00005046288	NFE2L1 (ENSOTSG00005046289) #15	prr15lb (ENSOTSG00005046292) ##19	pnpo (ENSOTSG00005046298) #20	osbpl7 (ENSOTSG00005046312) #22	tbx21 (ENSOTSG00005046495) #23	ENSOTSG00005046496 #24	MYO1D (ENSOTSG00005046497) #26	cdk5r1b (ENSOTSG00005046528) #27	psmd11b (ENSOTSG00005046532) #28	nsfb (ENSOTSG00005046544) #30	wnt3 (ENSOTSG00005047064) #31	ENSOTSG00005047065	ormdl3 (ENSOTSG00005047066) #32	THRA (ENSOTSG00005047067)	DHX8 (ENSOTSG00005047117)	etv4 (ENSOTSG00005047383)	meox1 (ENSOTSG00005047384)	telo2 (ENSOTSG00005047386)	ENSOTSG00005047405
Coho salmon	MODERN SPECIES	17	SRCAP (ENSOKIG00005006383)	ENSOKIG00005006351	chmp2a (ENSOKIG00005006333)	MSL1 (ENSOKIG00005006306)	gip (ENSOKIG00005006285)	ENSOKIG00005006204	ENSOKIG00005006149	hoxb6b (ENSOKIG00005006134)	HOXB5 (ENSOKIG00005006126) #7	ENSOKIG00005050142	skap1 (ENSOKIG00005050132) #13	ENSOKIG00005050124 #14	ENSOKIG00005050118	NFE2L1 (ENSOKIG00005050115) #15	pnpo (ENSOKIG00005050105) #20	osbpl7 (ENSOKIG00005050087) #22	tbx21 (ENSOKIG00005050077) #23	TBKBP1 (ENSOKIG00005050075) #24	ENSOKIG00005050071	MYO1D (ENSOKIG00005050047) #26	cdk5r1b (ENSOKIG00005050039) #27	psmd11b (ENSOKIG00005050034) #28	nsfb (ENSOKIG00005049879) #30	wnt3 (ENSOKIG00005049842) #31	ENSOKIG00005049837	THRA (ENSOKIG00005049611)	DHX8 (ENSOKIG00005049419)	DHX8 (ENSOKIG00005049000)	ETV4 (ENSOKIG00005048930)	meox1 (ENSOKIG00005048924)	SBK1 (ENSOKIG00005048921)
Rainbow trout	MODERN SPECIES	12	ENSOMYG00000029554	ENSOMYG00000029464	ENSOMYG00000029410	ENSOMYG00000029307	hoxb6b (ENSOMYG00000029292)	ENSOMYG00000029279 #7	ENSOMYG00000029271 #9	ENSOMYG00000029235	skap1 (ENSOMYG00000029211) #13	ENSOMYG00000029187 #14	ENSOMYG00000029159	NFE2L1 (ENSOMYG00000029147) #15	ENSOMYG00000029122	pnpo (ENSOMYG00000029098) #20	ENSOMYG00000028974	osbpl7 (ENSOMYG00000031874) #22	tbx21 (ENSOMYG00000031836) #23	ENSOMYG00000031829 #24	ENSOMYG00000027153 #26	ENSOMYG00000026236 #27	psmd11b (ENSOMYG00000026111) #28	nsfb (ENSOMYG00000023007) #30	ENSOMYG00000022370 #31	ENSOMYG00000022331 #32	ENSOMYG00000020950	ENSOMYG00000061952	DHX8 (ENSOMYG00000020305)	ENSOMYG00000017863	meox1 (ENSOMYG00000017853)	ENSOMYG00000053297	ENSOMYG00000017846
Huchen	MODERN SPECIES	160	chmp2a (ENSHHUG00000001718)	MSL1 (ENSHHUG00000001700)	snf8 (ENSHHUG00000001511)	ENSHHUG00000001453	ENSHHUG00000001438	hoxb6b (ENSHHUG00000001425)	hoxb5b (ENSHHUG00000001414) #7	ENSHHUG00000001390	hoxb1b (ENSHHUG00000001260)	skap1 (ENSHHUG00000001182) #13	ENSHHUG00000001172 #14	ENSHHUG00000001160	NFE2L1 (ENSHHUG00000001149) #15	ENSHHUG00000001031	pnpo (ENSHHUG00000000895) #20	osbpl7 (ENSHHUG00000000872) #22	tbx21 (ENSHHUG00000000861) #23	TBKBP1 (ENSHHUG00000000833) #24	ENSHHUG00000000857	MYO1D (ENSHHUG00000000794) #26	cdk5r1b (ENSHHUG00000000788) #27	psmd11b (ENSHHUG00000000673) #28
Salmoninae	ANCESTRAL SPECIES	23	ENSGT00940000165637	ENSGT00940000161529.x	ENSGT00940000165065.b.d	ENSGT00940000158354.c.a.d #7	ENSGT00940000159774.d #9	ENSGT00940000159503	ENSGT00390000017856.b.d #13	ENSGT00940000160113.l #14	ENSGT00940000154152.a.a.b	ENSGT00950000182892.a.b.a.b.a.d #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219.m.a #20	ENSGT00390000000603 #21	ENSGT00940000157439.b.d #22	ENSGT00940000166447.c #23	ENSGT00940000153704.B.c.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411.j #26	ENSGT00390000008812.b.b.a.a.b #27	ENSGT00530000063301.a.a.c.a.f #28	ENSGT00530000064085.c.d #30	ENSGT00940000157854.w.b #31	ENSGT00950000183178.b.b.b.c.a #32	ENSGT00940000157917.a.a.a.a	ENSGT00940000155510.u.b	ENSGT00940000158142.e	ENSGT00940000154018.a.b	ENSGT00390000014900.b.b.b.b
Huchen	MODERN SPECIES	15	calcoco2 (ENSHHUG00000039430)	ttll6 (ENSHHUG00000039397)	hoxb8b (ENSHHUG00000039387)	hoxb6b (ENSHHUG00000039384)	hoxb5b (ENSHHUG00000039381) #7	ENSHHUG00000039378 #9	hoxb1b (ENSHHUG00000039377)	skap1 (ENSHHUG00000039362) #13	SNX11 (ENSHHUG00000039351) #14	ENSHHUG00000039337	NFE2L1 (ENSHHUG00000039332) #15	cdk5rap3 (ENSHHUG00000039313) #18	prr15lb (ENSHHUG00000039309) ##19	pnpo (ENSHHUG00000039280) #20	mrpl10 (ENSHHUG00000039277) #21	osbpl7 (ENSHHUG00000039118) #22	tbx21 (ENSHHUG00000039104) #23	TBKBP1 (ENSHHUG00000039100) #24	PDK2 (ENSHHUG00000038929) #25	ENSHHUG00000038905	ENSHHUG00000038746 #26	cdk5r1b (ENSHHUG00000038736) #27	psmd11b (ENSHHUG00000038586) #28	ENSHHUG00000038269 #30
Salmoninae_a	ANCESTRAL SPECIES	17	ENSGT00940000165637	ENSGT00940000161529.x	ENSGT00940000165065.b.d	ENSGT00940000158354.c.a.d #7	ENSGT00940000159774.d.a #9	ENSGT00940000159503	ENSGT00390000017856.b.d #13	ENSGT00940000160113.l #14	ENSGT00940000154152.a.a.b	ENSGT00950000182892.a.b.a.b.a.d #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219.m.a #20	ENSGT00390000000603 #21	ENSGT00940000157439.b.d #22	ENSGT00940000166447.c #23	ENSGT00940000153704.B.c.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411.j #26	ENSGT00390000008812.b.b.a.a.b #27	ENSGT00530000063301.a.a.c.a.f #28	ENSGT00530000064085.c.d #30	ENSGT00940000157854.w.b #31	ENSGT00950000183178.b.b.b.c.a #32	ENSGT00940000157917.a.a.a.a	ENSGT00940000155510.u.b	ENSGT00940000158142.e	ENSGT00940000154018.a.b	ENSGT00390000014900.b.b.b.b.a
Salmo	ANCESTRAL SPECIES	3	ENSGT00950000183025.a.eb	ENSGT00940000165637	ENSGT00940000161529.x	ENSGT00940000161108.f	ENSGT00940000158354.c.a.d #7	ENSGT00940000159774.d.a #9	ENSGT00940000159503	ENSGT00390000017856.b.d #13	ENSGT00940000160113.l #14	ENSGT00940000154152.a.a.b	ENSGT00950000182892.a.b.a.b.a.d #15	ENSGT00390000000713 #18	ENSGT00940000154534.b.b ##19	ENSGT00390000011219.m.a #20	ENSGT00390000000603 #21	ENSGT00940000157439.b.d #22	ENSGT00940000166447.c #23	ENSGT00940000153704.B.c.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000156038.a.b.b	ENSGT00940000157411.j #26	ENSGT00390000008812.b.b.a.a.b #27	ENSGT00530000063301.a.a.c.a.f #28	ENSGT00530000064085.c.d #30	ENSGT00940000157854.w.b #31	ENSGT00950000183178.b.b.b.c.a #32	ENSGT00940000157917.a.a.a.a	ENSGT00940000155510.u.b	ENSGT00940000158142.e	ENSGT00940000154018.a.b	ENSGT00390000014900.b.b.b.b.a
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000033744	snf8 (ENSSSAG00000033130)	ENSSSAG00000032869	ttll6 (ENSSSAG00000032126)	hoxb8ba (ENSSSAG00000031831)	hoxb5b (ENSSSAG00000112500) #7	HoxB1ba (ENSSSAG00000109797)	skap1 (ENSSSAG00000031353) #13	snx11 (ENSSSAG00000031221) #14	ENSSSAG00000030773	NFE2L1 (ENSSSAG00000114824) #15	cdk5rap3 (ENSSSAG00000030149) #18	prr15lb (ENSSSAG00000106114) ##19	mrpl10 (ENSSSAG00000104339) #21	pnpo (ENSSSAG00000029666) #20	osbpl7 (ENSSSAG00000015453) #22	tbx21 (ENSSSAG00000015324) #23	TBKBP1 (ENSSSAG00000096340) #24	ENSSSAG00000083346 #25	ENSSSAG00000100824	ENSSSAG00000006495 #26	cdk5r1b (ENSSSAG00000101629) #27	psmd11b (ENSSSAG00000078688) #28	nsfb (ENSSSAG00000077571) #30	wnt3 (ENSSSAG00000077501) #31	ormdl3 (ENSSSAG00000105314) #32	ENSSSAG00000076909	DHX8 (ENSSSAG00000075459)	etv4 (ENSSSAG00000075346)	meox1 (ENSSSAG00000093864)	SOST (ENSSSAG00000086336)
River trout	MODERN SPECIES	11	calcoco2 (ENSSTUG00000038298)	ttll6 (ENSSTUG00000038182)	hoxb8b (ENSSTUG00000038168)	HOXB6 (ENSSTUG00000038160)	hoxb5b (ENSSTUG00000038154) #7	ENSSTUG00000038149 #9	hoxb1b (ENSSTUG00000038136)	skap1 (ENSSTUG00000038088) #13	SNX11 (ENSSTUG00000038070) #14	ENSSTUG00000038049	NFE2L1 (ENSSTUG00000038035) #15	cdk5rap3 (ENSSTUG00000037968) #18	prr15lb (ENSSTUG00000037963) ##19	pnpo (ENSSTUG00000037917) #20	mrpl10 (ENSSTUG00000037910) #21	osbpl7 (ENSSTUG00000037693) #22	tbx21 (ENSSTUG00000037670) #23	TBKBP1 (ENSSTUG00000037653) #24	PDK2 (ENSSTUG00000037271) #25	ENSSTUG00000037229	ENSSTUG00000036115 #26	cdk5r1b (ENSSTUG00000036065) #27	psmd11b (ENSSTUG00000035992) #28	nsfb (ENSSTUG00000035705) #30	wnt3 (ENSSTUG00000035650) #31	ormdl3 (ENSSTUG00000035643) #32	THRA (ENSSTUG00000034118)	DHX8 (ENSSTUG00000033181)	etv4 (ENSSTUG00000033108)	meox1 (ENSSTUG00000033095)	SOST (ENSSTUG00000033079)
Oncorhynchus	ANCESTRAL SPECIES	26	ENSGT00940000165637	ENSGT00940000161529.x	ENSGT00940000165065.b.d	ENSGT00940000158354.c.a.d #7	ENSGT00940000159774.d.a #9	ENSGT00940000159503	ENSGT00390000017856.b.d #13	ENSGT00940000160113.l #14	ENSGT00940000154152.a.a.b	ENSGT00950000182892.a.b.a.b.a.d #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b.c ##19	ENSGT00390000011219.m.a #20	ENSGT00390000000603 #21	ENSGT00940000157439.b.d #22	ENSGT00940000166447.c #23	ENSGT00940000153704.B.c.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411.j #26	ENSGT00390000008812.b.b.a.a.b #27	ENSGT00530000063301.a.a.c.a.f #28	ENSGT00530000064085.c.d #30	ENSGT00940000157854.w.b #31	ENSGT00950000183178.b.b.b.c.a #32	ENSGT00940000157917.a.a.a.a	ENSGT00940000155510.u.b	ENSGT00940000158142.e	ENSGT00940000154018.a.b	ENSGT00390000014900.b.b.b.b.a	ENSGT00940000162682.B.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	21	ENSGT00940000165637	ENSGT00940000161529.x	ENSGT00940000165065.b.d	ENSGT00940000158354.c.a.d #7	ENSGT00940000159774.d.a #9	ENSGT00940000159503	ENSGT00390000017856.b.d #13	ENSGT00940000160113.l #14	ENSGT00940000154152.a.a.b	ENSGT00950000182892.a.b.a.b.a.d #15	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.b.c ##19	ENSGT00390000011219.m.a #20	ENSGT00390000000603 #21	ENSGT00940000157439.b.d #22	ENSGT00940000166447.c #23	ENSGT00940000153704.B.c.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411.j #26	ENSGT00390000008812.b.b.a.a.b #27	ENSGT00530000063301.a.a.c.a.f #28	ENSGT00530000064085.c.d #30	ENSGT00940000157854.w.b #31	ENSGT00950000183178.b.b.b.c.a #32	ENSGT00940000157917.a.a.a.a	ENSGT00940000155510.u.b	ENSGT00940000158142.e	ENSGT00940000154018.a.b	ENSGT00390000014900.b.b.b.b.a	ENSGT00940000162682.B.a.a
Coho salmon	MODERN SPECIES	12	calcoco2 (ENSOKIG00005012687)	ttll6 (ENSOKIG00005012645)	hoxb8b (ENSOKIG00005012631)	hoxb6b (ENSOKIG00005012621)	hoxb5b (ENSOKIG00005012615) #7	ENSOKIG00005012606 #9	hoxb1b (ENSOKIG00005012579)	skap1 (ENSOKIG00005012565) #13	SNX11 (ENSOKIG00005012548) #14	ENSOKIG00005012530	NFE2L1 (ENSOKIG00005012519) #15	cdk5rap3 (ENSOKIG00005012472) #18	prr15lb (ENSOKIG00005012462) ##19	pnpo (ENSOKIG00005012392) #20	mrpl10 (ENSOKIG00005012380) #21	osbpl7 (ENSOKIG00005012334) #22	tbx21 (ENSOKIG00005012316) #23	TBKBP1 (ENSOKIG00005012307) #24	PDK2 (ENSOKIG00005012119) #25	ENSOKIG00005011062 #26	cdk5r1b (ENSOKIG00005011007) #27	psmd11b (ENSOKIG00005010937) #28	nsfb (ENSOKIG00005008716) #30	wnt3 (ENSOKIG00005008567) #31	ormdl3 (ENSOKIG00005008553) #32	ENSOKIG00005008540	THRA (ENSOKIG00005008207)	DHX8 (ENSOKIG00005007738)	ENSOKIG00005007695	etv4 (ENSOKIG00005007686)	meox1 (ENSOKIG00005007673)
Chinook salmon	MODERN SPECIES	16	ttll6 (ENSOTSG00005035818)	hoxb8b (ENSOTSG00005035817)	hoxb6b (ENSOTSG00005035816)	hoxb5b (ENSOTSG00005035815) #7	ENSOTSG00005035814 #9	hoxb1b (ENSOTSG00005035813)	skap1 (ENSOTSG00005035812) #13	SNX11 (ENSOTSG00005035810) #14	ENSOTSG00005035809	NFE2L1 (ENSOTSG00005035808) #15	ENSOTSG00005035807 #17	cdk5rap3 (ENSOTSG00005035804) #18	prr15lb (ENSOTSG00005035803) ##19	pnpo (ENSOTSG00005035801) #20	mrpl10 (ENSOTSG00005035800) #21	osbpl7 (ENSOTSG00005035132) #22	tbx21 (ENSOTSG00005035126) #23	ENSOTSG00005035125	ENSOTSG00005035124	ENSOTSG00005035123	akap17a (ENSOTSG00005035121)	ENSOTSG00005035120	ARSD (ENSOTSG00005035118)	ENSOTSG00005035117	ENSOTSG00005035116	mab21l3 (ENSOTSG00005035115)	wdfy2 (ENSOTSG00005045546)	GBP2 (ENSOTSG00005045542)	TBKBP1 (ENSOTSG00005045541) #24	PDK2 (ENSOTSG00005045506) #25	MYO1D (ENSOTSG00005043361) #26
Rainbow trout	MODERN SPECIES	7	ttll6 (ENSOMYG00000060738)	hoxb8b (ENSOMYG00000043684)	hoxb6b (ENSOMYG00000043680)	hoxb5b (ENSOMYG00000043678) #7	ENSOMYG00000043673 #9	hoxb1b (ENSOMYG00000057636)	skap1 (ENSOMYG00000043667) #13	SNX11 (ENSOMYG00000043658) #14	ENSOMYG00000043649	NFE2L1 (ENSOMYG00000043639) #15	ENSOMYG00000043634 #17	cdk5rap3 (ENSOMYG00000043627) #18	prr15lb (ENSOMYG00000043621) ##19	pnpo (ENSOMYG00000043606) #20	mrpl10 (ENSOMYG00000043590) #21	osbpl7 (ENSOMYG00000043504) #22	tbx21 (ENSOMYG00000043454) #23	TBKBP1 (ENSOMYG00000043446) #24	ENSOMYG00000043255 #25	ENSOMYG00000043223	ENSOMYG00000065805	ENSOMYG00000042956 #26	cdk5r1b (ENSOMYG00000042908) #27	psmd11b (ENSOMYG00000042895) #28	nsfb (ENSOMYG00000042291) #30	wnt3 (ENSOMYG00000042177) #31	ormdl3 (ENSOMYG00000042161) #32	ENSOMYG00000041692	ENSOMYG00000064442	DHX8 (ENSOMYG00000040006)	etv4 (ENSOMYG00000039467)
Northern pike	MODERN SPECIES	4	ENSELUG00000008959	snf8 (ENSELUG00000008940)	ENSELUG00000008892	ttll6 (ENSELUG00000008833)	hoxb5b (ENSELUG00000008806) #7	hoxb6b (ENSELUG00000025410)	ENSELUG00000008764 #9	ENSELUG00000008758 #12	skap1 (ENSELUG00000001494) #13	ENSELUG00000008701 #14	ENSELUG00000000330	NFE2L1 (ENSELUG00000008672) #15	cdk5rap3 (ENSELUG00000008635) #18	mrpl10 (ENSELUG00000008599) #21	pnpo (ENSELUG00000008568) #20	osbpl7 (ENSELUG00000008527) #22	tbx21 (ENSELUG00000001384) #23	ENSELUG00000027949	TBKBP1 (ENSELUG00000008379) #24	PDK2 (ENSELUG00000008326) #25	ENSELUG00000008271	MYO1D (ENSELUG00000008245) #26	cdk5r1b (ENSELUG00000008224) #27	psmd11b (ENSELUG00000008204) #28	nsfb (ENSELUG00000008162) #30	wnt3 (ENSELUG00000008126) #31	ormdl3 (ENSELUG00000008099) #32	THRA (ENSELUG00000008043)	DHX8 (ENSELUG00000007955)	etv4 (ENSELUG00000007861)	meox1 (ENSELUG00000030379)
Osteoglossocephalai	ANCESTRAL SPECIES	41	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c #7	ENSGT00940000158354.d ##7	ENSGT00940000161108	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000163268.e	ENSGT00940000159029	ENSGT00940000161434	ENSGT00940000165637	ENSGT00950000183025.a	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00550000074898	ENSGT00940000165499.a	ENSGT00390000007843	ENSGT00390000005121	ENSGT00940000177404	ENSGT00940000154957.A	ENSGT00990000204190	ENSGT00940000160548	ENSGT00390000018292.d	ENSGT00390000006930	ENSGT00940000160144	ENSGT00940000155557	ENSGT00530000063498.A
Clupeocephala	ANCESTRAL SPECIES	116	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108	ENSGT00940000158354.d ##7	ENSGT00940000165065.a	ENSGT00940000158354.c.b #7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000166856 #12	ENSGT00940000154152.b.a	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00390000004405.b #16	ENSGT00940000154534.b.a #19	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000175578	ENSGT00940000160279	ENSGT00940000156314.a	ENSGT00550000074898	ENSGT00940000165499.a	ENSGT00440000033919	ENSGT00940000162213	ENSGT00940000153840.a.a.a.b	ENSGT00940000164729.a.a	ENSGT00940000164729.b	ENSGT01030000234627.a.a.d.b	ENSGT00940000164067.A	ENSGT01030000235009
Otomorpha	ANCESTRAL SPECIES	27	ENSGT00940000159029	ENSGT00940000163268.e	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108	ENSGT00940000158354.d ##7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000166856 #12	ENSGT00940000154152.b.a	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00390000004405.b #16	ENSGT00940000154534.b.a #19	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000155557.jc.a	ENSGT00940000156395.f	ENSGT00390000015789	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b.x	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a	ENSGT01090000260030.a.b.b.b	ENSGT01030000235009	ENSGT00940000164067.A	ENSGT01030000234627.a.a.d.b	ENSGT00940000164729.b	ENSGT00940000164729.a.a	ENSGT00940000153840.a.a.a.b	ENSGT00940000162213
Clupeiformes	ANCESTRAL SPECIES	29	ENSGT00940000159029	ENSGT00940000163268.e	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108	ENSGT00940000158354.d ##7	ENSGT00940000162072 #8	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000166856 #12	ENSGT00940000154152.b.a	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00390000004405.b #16	ENSGT00940000154534.b.a #19	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000155557.jc.a	ENSGT00940000156395.f	ENSGT00390000015789	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b.x	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b.w	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a	ENSGT01090000260030.a.b.b.b	ENSGT01030000235009	ENSGT00940000164067.A	ENSGT01030000234627.a.a.d.b	ENSGT00940000164729.a.a	ENSGT00940000153840.a.a.a.b	ENSGT00940000162213
Atlantic herring	MODERN SPECIES		hoxb13a (ENSCHAG00000011984)	ENSCHAG00000011977	hoxb9a (ENSCHAG00000011972)	hoxb8a (ENSCHAG00000011949)	hoxb7a (ENSCHAG00000011939)	hoxb6a (ENSCHAG00000011924)	hoxb5a (ENSCHAG00000011908) ##7	hoxb4a (ENSCHAG00000011877) #8	hoxb3a (ENSCHAG00000011846) #9	hoxb2a (ENSCHAG00000011811) #10	hoxb1a (ENSCHAG00000011778) #12	cbx1a (ENSCHAG00000011737)	nfe2l1a (ENSCHAG00000011681) ##15	copz2 (ENSCHAG00000011583) #16	prr15la (ENSCHAG00000011558) #19	OSBPL7 (ENSCHAG00000011405) ##22	TBKBP1 (ENSCHAG00000011348) ##24	pdk2b (ENSCHAG00000011260) ##25	ENSCHAG00000011156	ENSCHAG00000010973	ENSCHAG00000010960	ENSCHAG00000010718	ENSCHAG00000010475	ENSCHAG00000010106	ENSCHAG00000010033	ENSCHAG00000009982	eps8l1a (ENSCHAG00000009860)	ENSCHAG00000009745	slc17a7a (ENSCHAG00000006294)	zgc:55558 (ENSCHAG00000006201)	pold1 (ENSCHAG00000004664)
Denticle herring	MODERN SPECIES	17	eve1 (ENSDCDG00000023747)	hoxb13a (ENSDCDG00000023744)	hoxb9a (ENSDCDG00000023741)	hoxb8a (ENSDCDG00000023738)	hoxb7a (ENSDCDG00000023736)	hoxb6a (ENSDCDG00000023730)	hoxb5a (ENSDCDG00000023726) ##7	hoxb4a (ENSDCDG00000023723) #8	hoxb3a (ENSDCDG00000023705) #9	hoxb2a (ENSDCDG00000023696) #10	hoxb1a (ENSDCDG00000023691) #12	cbx1a (ENSDCDG00000023683)	nfe2l1a (ENSDCDG00000023673) ##15	copz2 (ENSDCDG00000023665) #16	prr15la (ENSDCDG00000023656) #19	ENSDCDG00000023398 ##22	TBKBP1 (ENSDCDG00000023381) ##24	pdk2b (ENSDCDG00000022777) ##25	wipf2b (ENSDCDG00000022755)	JUP (ENSDCDG00000020697)	eif1 (ENSDCDG00000020640)	krt91 (ENSDCDG00000020639)	ENSDCDG00000020275	krtt1c19e (ENSDCDG00000019925)	si:dkeyp-113d7.1 (ENSDCDG00000019912)	ENSDCDG00000019910	stx1b (ENSDCDG00000019314)	ENSDCDG00000019296	MBTD1 (ENSDCDG00000019047)	nme2b.1 (ENSDCDG00000018933)	UTP18 (ENSDCDG00000018851)
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000157439.a ##22
Characiphysae	ANCESTRAL SPECIES	127	ENSGT00390000014542	ENSGT01050000244970.a	ENSGT00390000016607.b	ENSGT00390000009895	ENSGT00940000167560	ENSGT00870000136537	ENSGT00940000158230.b.b	ENSGT00390000007227.a	ENSGT00940000165323	ENSGT00940000159051	ENSGT00730000111283.a	ENSGT00940000157595	ENSGT00940000153845.a.a	ENSGT00950000183092.b.a.b	ENSGT00940000165750	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00510000049316
Channel catfish	MODERN SPECIES	16	ENSIPUG00000012344	psmd3 (ENSIPUG00000012305)	mllt11 (ENSIPUG00000012288)	gabpb2a (ENSIPUG00000012281)	Sf3b4 (ENSIPUG00000012242)	RAB25 (ENSIPUG00000012218)	naxe (ENSIPUG00000012193)	zgc:91968 (ENSIPUG00000012182)	stard3 (ENSIPUG00000012130)	ppp1r1b (ENSIPUG00000012103)	ENSIPUG00000012064	cdk12 (ENSIPUG00000012045)	FBXL20 (ENSIPUG00000011994)	STAC2 (ENSIPUG00000011978)	42sp43 (ENSIPUG00000011935)	ENSIPUG00000011895 ##22	ENSIPUG00000011875 ##24	ENSIPUG00000011775	ankle1 (ENSIPUG00000011683)	mindy1 (ENSIPUG00000011657)	rfx5 (ENSIPUG00000011617)	mrpl24 (ENSIPUG00000011593)	prcc (ENSIPUG00000011578)	mrpl9 (ENSIPUG00000011538)	lix1l (ENSIPUG00000011510)	adck5 (ENSIPUG00000011478)	cpsf1 (ENSIPUG00000011259)	parp10 (ENSIPUG00000011187)	ENSIPUG00000011172	spag1 (ENSIPUG00000010881)	ENSIPUG00000010824
Characiphysae_b	ANCESTRAL SPECIES	96	ENSGT00390000014542	ENSGT01050000244970.a	ENSGT00390000016607.b	ENSGT00390000009895	ENSGT00940000167560	ENSGT00870000136537	ENSGT00940000158230.b.b	ENSGT00390000007227.a	ENSGT00940000165323	ENSGT00940000159051	ENSGT00730000111283.a	ENSGT00940000157595	ENSGT00940000153845.a.a	ENSGT00950000183092.b.a.b	ENSGT00940000165750	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00510000049316	ENSGT00940000153653.a.a	ENSGT00390000017328.b	ENSGT00940000160279.h	ENSGT00940000156314.a	ENSGT00550000074898	ENSGT00940000162814	ENSGT00940000167798	ENSGT00940000165499.a	ENSGT00440000033919	ENSGT00940000162213	ENSGT00940000165670	ENSGT00940000161569	ENSGT00940000153840.a.a.a.b
Characoidei	ANCESTRAL SPECIES	122	ENSGT00390000014542	ENSGT01050000244970.a	ENSGT00390000016607.b	ENSGT00390000009895	ENSGT00940000167560	ENSGT00870000136537	ENSGT00940000158230.b.b	ENSGT00390000007227.a	ENSGT00940000165323	ENSGT00940000159051	ENSGT00730000111283.a	ENSGT00940000157595	ENSGT00940000153845.a.a	ENSGT00950000183092.b.a.b	ENSGT00940000165750	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00510000049316	ENSGT00940000153653.a.a	ENSGT00390000017328.b	ENSGT00940000160279.h	ENSGT00940000156314.a	ENSGT00550000074898	ENSGT00940000162814	ENSGT00940000167798	ENSGT00940000165499.a
Mexicana tetra	MODERN SPECIES	15	mrpl24 (ENSAMXG00000008374)	ENSAMXG00000008359	mindy1 (ENSAMXG00000008332)	mllt11 (ENSAMXG00000025899)	gabpb2a (ENSAMXG00000008307)	sf3b4 (ENSAMXG00000008282)	rab25a (ENSAMXG00000040879)	naxe (ENSAMXG00000008235)	zgc:91968 (ENSAMXG00000039253)	stard3 (ENSAMXG00000038462)	ppp1r1b (ENSAMXG00000036905)	CDK12 (ENSAMXG00000038884)	FBXL20 (ENSAMXG00000041574)	STAC2 (ENSAMXG00000033078)	42sp43 (ENSAMXG00000008097)	ENSAMXG00000008092 ##22	TBKBP1 (ENSAMXG00000008086) ##24	zgc:85936 (ENSAMXG00000040226)	psmd3 (ENSAMXG00000030231)	ENSAMXG00000031233	SAMD14 (ENSAMXG00000008049)	ENSAMXG00000008043	kpnb1 (ENSAMXG00000041903)	UBE2M (ENSAMXG00000036321)	zgc:158376 (ENSAMXG00000008005)	btr30 (ENSAMXG00000007984)	ENSAMXG00000007967	NME2 (ENSAMXG00000041731)	nme2b.1 (ENSAMXG00000034136)	MBTD1 (ENSAMXG00000007937)	ENSAMXG00000007909
Red-bellied piranha	MODERN SPECIES	488	mrpl24 (ENSPNAG00000008084)	ENSPNAG00000000659	mindy1 (ENSPNAG00000008100)	mllt11 (ENSPNAG00000008103)	gabpb2a (ENSPNAG00000008110)	sf3b4 (ENSPNAG00000000686)	rab25a (ENSPNAG00000000694)	naxe (ENSPNAG00000000702)	zgc:91968 (ENSPNAG00000000706)	stard3 (ENSPNAG00000000749)	ppp1r1b (ENSPNAG00000008190)	CDK12 (ENSPNAG00000000773)	FBXL20 (ENSPNAG00000008217)	STAC2 (ENSPNAG00000000808)	42sp43 (ENSPNAG00000000815)	ENSPNAG00000000891 ##22	TBKBP1 (ENSPNAG00000000909) ##24	zgc:85936 (ENSPNAG00000000915)	psmd3 (ENSPNAG00000008355)
Electric eel	MODERN SPECIES	252												CDK12 (ENSEEEG00000017305)	FBXL20 (ENSEEEG00000017052)	STAC2 (ENSEEEG00000017041)	42sp43 (ENSEEEG00000017040)	ENSEEEG00000017038 ##22	TBKBP1 (ENSEEEG00000017034) ##24	zgc:85936 (ENSEEEG00000017033)	psmd3 (ENSEEEG00000016673)	ENSEEEG00000016656	SAMD14 (ENSEEEG00000016646)	ENSEEEG00000016643	kpnb1 (ENSEEEG00000016639)	UBE2M (ENSEEEG00000016636)	zgc:158376 (ENSEEEG00000016633)	btr30 (ENSEEEG00000016632)	UTP18 (ENSEEEG00000016629)	nme2b.1 (ENSEEEG00000016628)	MBTD1 (ENSEEEG00000016625)	ENSEEEG00000016622	ENSEEEG00000016620
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000157439.a ##22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	1023													ENSGT00390000012959.a.g	ENSGT00940000156331.a.b	ENSGT00940000153814.b.e	ENSGT00940000157439.a.a ##22
Goldfish	MODERN SPECIES	10	thrb (ENSCARG00000022786)	RARB (ENSCARG00000022949)	ENSCARG00000022992	top2b (ENSCARG00000023038)	ENSCARG00000023926	ENSCARG00000023932	CCNE2 (ENSCARG00000023946)	ENSCARG00000023970	ENSCARG00000024047	selenoh (ENSCARG00000024054)	psmb10 (ENSCARG00000001986)	NT5C3B (ENSCARG00000002020)	FKBP10 (ENSCARG00000002029)	p3h4 (ENSCARG00000002051)	ENSCARG00000002072	ENSCARG00000002158 ##22	ENSCARG00000002428	slc39a7 (ENSCARG00000002455)	RING1 (ENSCARG00000002457)	rps18 (ENSCARG00000002464)	VPS52 (ENSCARG00000002497)	ENSCARG00000002765	ddah2 (ENSCARG00000002773)	ENSCARG00000002782	clic1 (ENSCARG00000002794)	ENSCARG00000002816	ENSCARG00000002833	ENSCARG00000002848	zgc:85936 (ENSCARG00000002855)	psmd3 (ENSCARG00000002890)	ENSCARG00000002976
Cyprininae_a	ANCESTRAL SPECIES	542				ENSGT00940000154725.i	ENSGT00510000049347.h.a.a	ENSGT00940000154708.o	ENSGT00390000002843.b	ENSGT00940000160769.k	ENSGT00940000155779.a.b.a.a	ENSGT01060000248556.A.a.a.b	ENSGT00950000183092.b.a.b	ENSGT00940000165750	ENSGT00390000012959.a.g	ENSGT00940000156331.a.b	ENSGT00940000153814.b.e	ENSGT00940000157439.a.a ##22
Common carp reference	MODERN SPECIES	12	ENSCCRG00000082571	ENSCCRG00000080458	ENSCCRG00000026096	clic1 (ENSCCRG00000076636)	ENSCCRG00000077859	ddah2 (ENSCCRG00000051598)	ppt2b (ENSCCRG00000050521)	ENSCCRG00000022536	ENSCCRG00000059164	ENSCCRG00000050628	NT5C3B (ENSCCRG00000024398)	ENSCCRG00000023050	P3H4 (ENSCCRG00000022516)	ENSCCRG00000079066	ENSCCRG00000074747	ENSCCRG00000051234 ##22	ENSCCRG00000079274	ENSCCRG00000074418	ENSCCRG00000077035	ENSCCRG00000055843	ENSCCRG00000004704	ENSCCRG00000004712	ENSCCRG00000062985	ENSCCRG00000019926	ints8 (ENSCCRG00000034766)	ENSCCRG00000038608	ENSCCRG00000065576	ENSCCRG00000019890	top2b (ENSCCRG00000030918)	RARB (ENSCCRG00000033162)	thrb (ENSCCRG00000049264)
Golden-line barbel	MODERN SPECIES	867			ENSSGRG00000042763	ENSSGRG00000042764	ENSSGRG00000042765	clic1 (ENSSGRG00000042768)	ENSSGRG00000042769	ddah2 (ENSSGRG00000042771)	ppt2b (ENSSGRG00000042779)	cratb (ENSSGRG00000042781)	ENSSGRG00000043076	42sp43 (ENSSGRG00000043077)	NT5C3B (ENSSGRG00000043080)	FKBP10 (ENSSGRG00000043083)	p3h4 (ENSSGRG00000043145)	ENSSGRG00000043152 ##22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000157439.a.b ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000157439.a.b ##22
Golden-line barbel	MODERN SPECIES	860																ENSSGRG00000031725 ##22	psmb10 (ENSSGRG00000031837)	selenoh (ENSSGRG00000031928)	ENSSGRG00000031929	ENSSGRG00000031930	ENSSGRG00000031931	ints8 (ENSSGRG00000032000)	ENSSGRG00000032776	top2b (ENSSGRG00000032824)	ENSSGRG00000033647
Goldfish	MODERN SPECIES	55	ENSCARG00000028113	ENSCARG00000028107	ENSCARG00000028105	her12 (ENSCARG00000028099)	tas1r1 (ENSCARG00000028052)	IFFO2 (ENSCARG00000028015)	UBR4 (ENSCARG00000025664)	ENSCARG00000025442	clic1 (ENSCARG00000025427)	ENSCARG00000025421	ENSCARG00000025418	ddah2 (ENSCARG00000025406)	cratb (ENSCARG00000024076)	ENSCARG00000024026	ENSCARG00000023958	ENSCARG00000023884 ##22	ENSCARG00000024863	ENSCARG00000024858	thrb (ENSCARG00000024473)	ENSCARG00000024443	ENSCARG00000024439	ENSCARG00000024430	ENSCARG00000024428	ENSCARG00000024423	nr1d2b (ENSCARG00000024411)	ENSCARG00000024407	rpl15 (ENSCARG00000024389)	nkiras1 (ENSCARG00000024365)	ube2e1 (ENSCARG00000024353)	sf3a3 (ENSCARG00000024313)	ENSCARG00000024293
Euteleosteomorpha	ANCESTRAL SPECIES	142											ENSGT00940000156447.a.b	ENSGT00950000183197.a	ENSGT00940000160534	ENSGT00390000006956.b	ENSGT00940000155311.A.a	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000154360.B	ENSGT00940000153653.a.a	ENSGT00390000017328.a.a	ENSGT00940000160279	ENSGT00940000156314.a	ENSGT00550000074898	ENSGT00940000167798	ENSGT00940000162814	ENSGT00940000165499.a	ENSGT00940000165670	ENSGT00940000160144	ENSGT00390000006930	ENSGT00390000018292.d
Acanthomorphata	ANCESTRAL SPECIES	180	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161108	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000163268.e	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25
Euacanthomorphacea	ANCESTRAL SPECIES	98	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161108	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000163268.e	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25
Percomorphaceae	ANCESTRAL SPECIES	49	ENSGT01090000261037	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161108	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01090000260003.a.b.b.a.b	ENSGT01100000263693	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000153500.a.b.f	ENSGT00940000155148.a.a	ENSGT00950000183183.a
Tiger tail seahorse	MODERN SPECIES	507		ENSHCOG00000008135	copz2 (ENSHCOG00000008155) #16	ENSHCOG00000008185	hoxb1a (ENSHCOG00000008252) #12	hoxb2a (ENSHCOG00000008273) #10	hoxb3a (ENSHCOG00000008278) #9	hoxb4a (ENSHCOG00000008282) #8	HOXB5 (ENSHCOG00000008284) #7	ENSHCOG00000008289	hoxb8a (ENSHCOG00000008293)	hoxb9a (ENSHCOG00000008300)	hoxb13a (ENSHCOG00000008373)	atp5mc1 (ENSHCOG00000008380)	ube2z (ENSHCOG00000008393)	ENSHCOG00000008433 ##22	ENSHCOG00000008443 ##24	pdk2b (ENSHCOG00000008469) ##25	kcnc3a (ENSHCOG00000008490)	ENSHCOG00000008498	ENSHCOG00000008504	aoc2 (ENSHCOG00000008509)	ENSHCOG00000008523	ARL4D (ENSHCOG00000008536)	prkar1aa (ENSHCOG00000008573)	zgc:86896 (ENSHCOG00000008595)	wipi1 (ENSHCOG00000008633)	SLC16A6 (ENSHCOG00000008659)	ENSHCOG00000008672	GNA13 (ENSHCOG00000008690)	rgs9a (ENSHCOG00000008716)
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000154152.a.b	ENSGT01090000261037	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000153500.a.b.f	ENSGT00940000155148.a.a	ENSGT00950000183183.a	ENSGT00940000156833.b
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00940000160685	ENSGT00940000156395.f	ENSGT00510000046608.A	ENSGT00940000159428.e.b	ENSGT00390000009628	ENSGT00940000155582.q.a	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00940000160685	ENSGT00940000156395.f	ENSGT00510000046608.A	ENSGT00940000159428.e.b	ENSGT00390000009628	ENSGT00940000155582.q.a	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00390000017136	ENSGT00940000156505.t
Pomacentridae	ANCESTRAL SPECIES	47	ENSGT00950000182906.a.a.a	ENSGT00940000156643	ENSGT00730000111100.a.a	ENSGT00940000163663.A.a	ENSGT00950000182979.a.a.a.a	ENSGT00390000015495	ENSGT01060000249206	ENSGT01100000263483.F.b.a.b	ENSGT00940000169047	ENSGT00940000166738	ENSGT00950000182951.A.a.b.b	ENSGT01060000248591.a.a.a.b.a	ENSGT00940000153560.b.b.b.g	ENSGT00940000159653.g.a	ENSGT00940000156569.a.a	ENSGT00940000157439.a ##22
Pomacentridae_A	ANCESTRAL SPECIES	21				ENSGT00940000163663.A.a	ENSGT00950000182979.a.a.a.a	ENSGT00390000015495	ENSGT01060000249206	ENSGT01100000263483.F.b.a.b	ENSGT00940000169047	ENSGT00940000166738	ENSGT00950000182951.A.a.b.b	ENSGT01060000248591.a.a.a.b.a	ENSGT00940000153560.b.b.b.g	ENSGT00940000159653.g.a	ENSGT00940000156569.a.a	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00950000183207.b.bb	ENSGT01100000263693	ENSGT00940000164903.b	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564	ENSGT00400000024810.f	ENSGT00940000159029	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000165065.a	ENSGT00940000158354.c.b #7	ENSGT00940000162072 #8
Amphiprion	ANCESTRAL SPECIES	105					ENSGT00940000163663.A.a	ENSGT00940000178257	ENSGT01060000249206	ENSGT01100000263483.F.b.a.b	ENSGT00940000155124	ENSGT00940000166738	ENSGT00950000182951.A.a.b.b	ENSGT01060000248591.a.a.a.b.a	ENSGT00940000153560.b.b.b.g	ENSGT00940000159653.g.a	ENSGT00940000156569.a.a	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00950000183207.b.bb	ENSGT01100000263693	ENSGT00940000164903.b	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564	ENSGT00400000024810.f	ENSGT00940000159029	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000165065.a	ENSGT00940000158354.c.b #7	ENSGT00940000162072.c #8
Clown anemonefish	MODERN SPECIES	3439																ENSAOCG00000002356 ##22	ENSAOCG00000012128 ##24	aoc2 (ENSAOCG00000012103)	aoc2 (ENSAOCG00000000742)	ENSAOCG00000012073	kcnc3a (ENSAOCG00000012015)	ube2z (ENSAOCG00000011683)	atp5mc1 (ENSAOCG00000011640)
Orange clownfish	MODERN SPECIES	5	ENSAPEG00000000688	ENSAPEG00000000707	ENSAPEG00000000721	ENSAPEG00000000746	ENSAPEG00000000750	ENSAPEG00000000770	ENSAPEG00000000777	ENSAPEG00000000799	ENSAPEG00000000806	ENSAPEG00000000859	ENSAPEG00000001081	pvalb6 (ENSAPEG00000001089)	ENSAPEG00000001110	ENSAPEG00000001129	ENSAPEG00000001147	ENSAPEG00000001162 ##22	ENSAPEG00000001248 ##24	aoc2 (ENSAPEG00000001276)	ENSAPEG00000001315	kcnc3a (ENSAPEG00000001352)
Spiny chromis	MODERN SPECIES	241						ENSAPOG00000001289	ENSAPOG00000001303	ENSAPOG00000001312	ENSAPOG00000001315	ENSAPOG00000001324	ENSAPOG00000001335	ENSAPOG00000001342	ENSAPOG00000001349	pvalb6 (ENSAPOG00000001355)	ENSAPOG00000001363	ENSAPOG00000001374 ##22	ENSAPOG00000001381 ##24	ENSAPOG00000001384	ENSAPOG00000001387	kcnc3a (ENSAPOG00000001394)	ube2z (ENSAPOG00000001401)	atp5mc1 (ENSAPOG00000001410)	eve1 (ENSAPOG00000001415)	ENSAPOG00000001423	hoxb13a (ENSAPOG00000001427)	hoxb9a (ENSAPOG00000001429)	hoxb8a (ENSAPOG00000001432)	hoxb7a (ENSAPOG00000001435)	ENSAPOG00000001438	HOXB5 (ENSAPOG00000001445) #7	hoxb4a (ENSAPOG00000001450) #8
Bicolor damselfish	MODERN SPECIES	1755										ENSSPAG00000010762	ENSSPAG00000010823	ENSSPAG00000010846	ENSSPAG00000010867	pvalb6 (ENSSPAG00000010881)	ENSSPAG00000010894	OSBPL7 (ENSSPAG00000010925) ##22
Cichlidae	ANCESTRAL SPECIES	19	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a.b	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00510000046608.A	ENSGT00940000159428.e.b	ENSGT00390000009628	ENSGT00550000074885	ENSGT01010000222360.D.a	ENSGT00390000015505	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a	ENSGT00940000158268.b	ENSGT00940000160972	ENSGT00940000167194	ENSGT00950000182838.A.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160271	ENSGT00940000176920	ENSGT00950000183183.a	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164	ENSGT00940000164903.b	ENSGT01090000260003.a.b.b.a.b	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00510000046608.A	ENSGT00940000159428.e.b	ENSGT00390000009628	ENSGT00550000074885	ENSGT01010000222360.D.a	ENSGT00390000015505	ENSGT00940000154318.B	ENSGT00940000165851
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	27														ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00510000046608.A	ENSGT00940000159428.e.b	ENSGT00390000009628	ENSGT00550000074885	ENSGT01010000222360.D.a	ENSGT00390000015505	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00940000164506.b.b	ENSGT00940000160257	ENSGT00940000167287	ENSGT00940000160315	ENSGT00940000157552.s.b	ENSGT00390000016298.a
Haplochromini	ANCESTRAL SPECIES	32														ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00510000046608.A	ENSGT00940000159428.e.b	ENSGT00390000009628	ENSGT00550000074885	ENSGT01010000222360.D.a	ENSGT00390000015505	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00940000164506.b.b	ENSGT00940000160257	ENSGT00940000167287	ENSGT00940000160315	ENSGT00940000157552.s.b	ENSGT00390000016298.a
Burton s mouthbrooder	MODERN SPECIES	350														atp5mc1 (ENSHBUG00000019041)	ube2z (ENSHBUG00000019064)	ENSHBUG00000019171 ##22	ENSHBUG00000019214 ##24	gps1 (ENSHBUG00000019273)	slc25a23b (ENSHBUG00000019286)	pdxdc1 (ENSHBUG00000019301)	abat (ENSHBUG00000019385)	rcn3 (ENSHBUG00000019401)	nosip (ENSHBUG00000000578)	ENSHBUG00000019446	tspan4b (ENSHBUG00000019463)	tspan35 (ENSHBUG00000019477)	ZNF653 (ENSHBUG00000019490)	ENSHBUG00000000754	swsap1 (ENSHBUG00000019505)	epor (ENSHBUG00000019519)	rab3db (ENSHBUG00000019542)
Haplochromini_A	ANCESTRAL SPECIES	34														ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00510000046608.A	ENSGT00940000159428.e.b	ENSGT00390000009628	ENSGT00550000074885	ENSGT01010000222360.D.a	ENSGT00390000015505	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00940000164506.b.b	ENSGT00940000160257	ENSGT00940000167287	ENSGT00940000160315	ENSGT00940000157552.s.b	ENSGT00390000016298.a
Haplochromini_B	ANCESTRAL SPECIES	31	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a.b	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564.c	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00510000046608.A	ENSGT00940000159428.e.b	ENSGT00390000009628	ENSGT00550000074885	ENSGT01010000222360.D.a	ENSGT00390000015505	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00940000164506.b.b	ENSGT00940000160257	ENSGT00940000167287	ENSGT00940000160315	ENSGT00940000157552.s.b	ENSGT00390000016298.a
Eastern happy	MODERN SPECIES	16	hoxb2a (ENSACLG00000003504) #10	hoxb3a (ENSACLG00000003477) #9	hoxb4a (ENSACLG00000003470) #8	HOXB5 (ENSACLG00000003462) #7	ENSACLG00000003444	hoxb7a (ENSACLG00000003441)	hoxb8a (ENSACLG00000003429)	hoxb9a (ENSACLG00000003422)	hoxb13a (ENSACLG00000003412)	ENSACLG00000003399	eve1 (ENSACLG00000003367)	ENSACLG00000003361	ENSACLG00000003164	ENSACLG00000003089	ENSACLG00000003070	ENSACLG00000002843 ##22	ENSACLG00000002801 ##24	gps1 (ENSACLG00000002752)	slc25a23b (ENSACLG00000002671)	pdxdc1 (ENSACLG00000002655)	abat (ENSACLG00000002554)	rcn3 (ENSACLG00000002546)	nosip (ENSACLG00000002526)	ENSACLG00000002505	tspan4b (ENSACLG00000002482)	tspan35 (ENSACLG00000002465)	ZNF653 (ENSACLG00000002459)	swsap1 (ENSACLG00000002450)	epor (ENSACLG00000002444)	rab3db (ENSACLG00000002403)	tmem205 (ENSACLG00000002430)
Zebra mbuna	MODERN SPECIES	1107	CA10 (ENSMZEG00005000607)	ENSMZEG00005000861	ENSMZEG00005000874	rpl23 (ENSMZEG00005000906)	ENSMZEG00005001061	smarce1 (ENSMZEG00005001067)	ENSMZEG00005001089	ENSMZEG00005001111	mpp2a (ENSMZEG00005001260)	ENSMZEG00005001318	ENSMZEG00005001479	ENSMZEG00005001485	ENSMZEG00005001512	atp5mc1 (ENSMZEG00005001524)	ube2z (ENSMZEG00005001531)	ENSMZEG00005001552 ##22	ENSMZEG00005001658 ##24	gps1 (ENSMZEG00005001674)	slc25a23b (ENSMZEG00005001708)	pdxdc1 (ENSMZEG00005001733)	abat (ENSMZEG00005001747)	rcn3 (ENSMZEG00005001801)	nosip (ENSMZEG00005001807)	ENSMZEG00005001858	tspan4b (ENSMZEG00005001874)	tspan35 (ENSMZEG00005001881)	ZNF653 (ENSMZEG00005001900)	swsap1 (ENSMZEG00005001903)	epor (ENSMZEG00005001919)	rab3db (ENSMZEG00005001924)	tmem205 (ENSMZEG00005001933)
P. nyererei	MODERN SPECIES	376														atp5mc1 (ENSPNYG00000003015)	ube2z (ENSPNYG00000002994)	ENSPNYG00000002927 ##22	ENSPNYG00000002907 ##24	gps1 (ENSPNYG00000002858)	slc25a23b (ENSPNYG00000002827)	pdxdc1 (ENSPNYG00000002782)	abat (ENSPNYG00000002688)	rcn3 (ENSPNYG00000002664)	nosip (ENSPNYG00000002631)	ENSPNYG00000002598	tspan4b (ENSPNYG00000002570)	tspan35 (ENSPNYG00000002531)	ZNF653 (ENSPNYG00000002518)	swsap1 (ENSPNYG00000002502)	epor (ENSPNYG00000002488)	rab3db (ENSPNYG00000002471)	tmem205 (ENSPNYG00000002455)
Lyretail cichlid	MODERN SPECIES	423														atp5mc1 (ENSNBRG00000009080)	ube2z (ENSNBRG00000009090)	ENSNBRG00000009115 ##22	ENSNBRG00000009157 ##24	gps1 (ENSNBRG00000009179)	slc25a23b (ENSNBRG00000009220)	pdxdc1 (ENSNBRG00000009263)	abat (ENSNBRG00000009369)	ENSNBRG00000009437	rcn3 (ENSNBRG00000009455)	nosip (ENSNBRG00000009461)	tspan4b (ENSNBRG00000009508)	tspan35 (ENSNBRG00000009549)	ENSNBRG00000009573	swsap1 (ENSNBRG00000009582)	epor (ENSNBRG00000009593)	rab3db (ENSNBRG00000009621)	tmem205 (ENSNBRG00000009738)
Nile tilapia	MODERN SPECIES	16	kcnc3a (ENSONIG00000007881)	ENSONIG00000034305	ENSONIG00000033692	ENSONIG00000037059	ENSONIG00000041870	ENSONIG00000031677	ENSONIG00000028834	ENSONIG00000027913	JUP (ENSONIG00000010944)	ENSONIG00000033274	ENSONIG00000027914	ENSONIG00000039531	atp5mc1 (ENSONIG00000003382)	ENSONIG00000030974	ube2z (ENSONIG00000003389)	ENSONIG00000003396 ##22	ENSONIG00000042906	gps1 (ENSONIG00000033227)	ENSONIG00000040529	ENSONIG00000034796	ENSONIG00000020625	ENSONIG00000037515	gspt1l (ENSONIG00000003456)	ENSONIG00000030826	hao1 (ENSONIG00000003451)	smg1 (ENSONIG00000003445)	fbxl16 (ENSONIG00000003442)	glyr1 (ENSONIG00000003435)	ppl (ENSONIG00000003424)	TMEM187 (ENSONIG00000020624)	ENSONIG00000037766
Midas cichlid	MODERN SPECIES	955	nfe2l1a (ENSACIG00000013108) ##15	CBX1 (ENSACIG00000013092)	hoxb1a (ENSACIG00000013039) #12	hoxb2a (ENSACIG00000013020) #10	hoxb3a (ENSACIG00000013009) #9	hoxb4a (ENSACIG00000012965) #8	HOXB5 (ENSACIG00000012950) #7	ENSACIG00000012907	ENSACIG00000012901	hoxb8a (ENSACIG00000012892)	hoxb9a (ENSACIG00000012882)	hoxb13a (ENSACIG00000012834)	eve1 (ENSACIG00000012824)	ube2z (ENSACIG00000012810)	PDK2 (ENSACIG00000012780) ##25	ENSACIG00000012733 ##22
Atherinomorphae	ANCESTRAL SPECIES	127																ENSGT00940000157439.a ##22	ENSGT00510000046608.A
Oryzias	ANCESTRAL SPECIES		ENSGT00550000074885	ENSGT00940000160377	ENSGT01100000263525.a.b.a.b	ENSGT00390000005830	ENSGT00940000155904	ENSGT00930000151040.b	ENSGT00950000183183.a.g	ENSGT00940000156833.b	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164	ENSGT00940000156435	ENSGT00940000160643.i	ENSGT00940000157439.a ##22	ENSGT00390000016335.g	ENSGT00510000046608.A	ENSGT00950000183207.b	ENSGT00910000144250	ENSGT00940000164817	ENSGT00390000001488	ENSGT00940000162720.a.b.b	ENSGT00940000155582.q.a	ENSGT00390000009628	ENSGT00940000158310	ENSGT00940000159138	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00390000004690.a.a	ENSGT01030000234606.a.b.i.a
Oryzias_b	ANCESTRAL SPECIES	43	ENSGT00550000074885	ENSGT00940000160377	ENSGT01100000263525.a.b.a.b	ENSGT00390000005830	ENSGT00940000155904	ENSGT00930000151040.b	ENSGT00950000183183.a.g	ENSGT00940000156833.b	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164	ENSGT00940000156435	ENSGT00940000160643.i	ENSGT00940000157439.a ##22	ENSGT00390000016335.g	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00910000144250	ENSGT00950000183207.b	ENSGT00510000046608.A	ENSGT00940000155582.q.a	ENSGT00390000009628	ENSGT00940000158310	ENSGT00940000159138	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00390000004690.a.a	ENSGT01030000234606.a.b.i.a
Javanese ricefish	MODERN SPECIES	22	ENSOJAG00000007276	ENSOJAG00000007198	ENSOJAG00000007162	ppp4cb (ENSOJAG00000007121)	ENSOJAG00000007084	zgc:86896 (ENSOJAG00000007035)	wipi1 (ENSOJAG00000006362)	SLC16A6 (ENSOJAG00000006330)	GNA13 (ENSOJAG00000006312)	rgs9a (ENSOJAG00000005761)	COG1 (ENSOJAG00000005304)	ENSOJAG00000005270	rogdi (ENSOJAG00000005199)	glyr1 (ENSOJAG00000005163)	pyya (ENSOJAG00000005142)	ENSOJAG00000005051 ##22	ENSOJAG00000005021	ENSOJAG00000005009	RRN3 (ENSOJAG00000004581)	aldh3b1 (ENSOJAG00000004316)	clpp (ENSOJAG00000004209)	si:ch211-286b5.5 (ENSOJAG00000004189)	abat (ENSOJAG00000003101)	rcn3 (ENSOJAG00000002988)	ENSOJAG00000002982	nosip (ENSOJAG00000002929)	ENSOJAG00000002908	ENSOJAG00000002904	tspan4b (ENSOJAG00000002889)
Indian medaka	MODERN SPECIES	22	GPR63 (ENSOMEG00000003355)	e2f6 (ENSOMEG00000003348)	hivep2a (ENSOMEG00000003314)	clpp (ENSOMEG00000003271)	aldh3b1 (ENSOMEG00000003237)	ppp4cb (ENSOMEG00000003223)	zgc:86896 (ENSOMEG00000003180)	wipi1 (ENSOMEG00000003137)	SLC16A6 (ENSOMEG00000000066)	gna13a (ENSOMEG00000003099)	rgs9a (ENSOMEG00000003083)	COG1 (ENSOMEG00000003049)	ENSOMEG00000003034	glyr1 (ENSOMEG00000003013)	pyya (ENSOMEG00000002972)	ENSOMEG00000002948 ##22	ENSOMEG00000002860	ENSOMEG00000002841	RRN3 (ENSOMEG00000002840)	ENSOMEG00000002822	actr10 (ENSOMEG00000002790)	aoc2 (ENSOMEG00000002776)	gps1 (ENSOMEG00000002767)	gspt1l (ENSOMEG00000002739)	pdxdc1 (ENSOMEG00000002710)	ENSOMEG00000002676	ENSOMEG00000002649	ENSOMEG00000002639	ENSOMEG00000002622	ENSOMEG00000002619	epha7 (ENSOMEG00000002608)
Oryzias_a	ANCESTRAL SPECIES	68	ENSGT00550000074885	ENSGT00940000160377	ENSGT01100000263525.a.b.a.b	ENSGT00390000005830	ENSGT00940000155904	ENSGT00930000151040.b	ENSGT00950000183183.a.g	ENSGT00940000156833.b	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164	ENSGT00940000156435	ENSGT00940000160643.i	ENSGT00940000157439.a ##22	ENSGT00390000016335.g	ENSGT00510000046608.A	ENSGT00950000183207.b	ENSGT00910000144250	ENSGT00940000164817	ENSGT00390000001488	ENSGT00940000162720.a.b.b	ENSGT00940000155582.q.a	ENSGT00390000009628
Japanese Medaka HdrR	MODERN SPECIES	22	carm1 (ENSORLG00000017315)	si:ch211-286b5.5 (ENSORLG00000024599)	clpp (ENSORLG00000017320)	aldh3b1 (ENSORLG00000017338)	ppp4cb (ENSORLG00000017341)	zgc:86896 (ENSORLG00000017356)	wipi1 (ENSORLG00000017365)	SLC16A6 (ENSORLG00000017371)	gna13a (ENSORLG00000017378)	rgs9a (ENSORLG00000017392)	COG1 (ENSORLG00000017408)	rogdi (ENSORLG00000017420)	glyr1 (ENSORLG00000017440)	ENSORLG00000023902	pyya (ENSORLG00000017443)	ENSORLG00000017454 ##22	ENSORLG00000017463	gps1 (ENSORLG00000017478)	aoc2 (ENSORLG00000017488)	actr10 (ENSORLG00000017497)	ENSORLG00000025261	ENSORLG00000023217	ENSORLG00000025514	ENSORLG00000029125	RRN3 (ENSORLG00000026398)	gspt1l (ENSORLG00000026597)	ENSORLG00000026353	pdxdc1 (ENSORLG00000018963)	NSF (ENSORLG00000018913) ##30	ENSORLG00000023908	ENSORLG00000018877 ##27
Cyprinodontiformes	ANCESTRAL SPECIES	148																ENSGT00940000157439.a ##22	ENSGT00510000046608.A
Aplocheiloidei	ANCESTRAL SPECIES	447																ENSGT00940000157439.a ##22	ENSGT00510000046608.A
Mangrove rivulus	MODERN SPECIES	170													ENSKMAG00000015150	tspan4b (ENSKMAG00000015180)	ENSKMAG00000015202	ENSKMAG00000015264 ##22	gps1 (ENSKMAG00000015409)	slc5a9 (ENSKMAG00000015453)	ENSKMAG00000015478	ENSKMAG00000015486	ENSKMAG00000015493	ube2z (ENSKMAG00000015515)	kcnc3a (ENSKMAG00000015557)	aoc2 (ENSKMAG00000015623)	pyya (ENSKMAG00000015638)	mpp2a (ENSKMAG00000015668)	yipf2 (ENSKMAG00000015752)	timm29 (ENSKMAG00000015770)	ENSKMAG00000015784	rpl23 (ENSKMAG00000015811)	ENSKMAG00000015870
Turquoise killifish	MODERN SPECIES	1625	ENSNFUG00015022855	ENSNFUG00015022872	CYB561 (ENSNFUG00015022964)	HDAC5 (ENSNFUG00015022977)	PEX12 (ENSNFUG00015023008)	ENSNFUG00015023010	hoxb1a (ENSNFUG00015023012) #12	hoxb2a (ENSNFUG00015023015) #10	HOXB3A (ENSNFUG00015023020) #9	HOXB4A (ENSNFUG00015023022) #7	hoxb8a (ENSNFUG00015023025)	hoxb9a (ENSNFUG00015023026)	ENSNFUG00015023028	kcnc3a (ENSNFUG00015005093)	AOC2 (ENSNFUG00015005121)	ENSNFUG00015005204 ##22	ENSNFUG00015005595	GPS1 (ENSNFUG00015005639)	NOTO (ENSNFUG00015005834)	emx1 (ENSNFUG00015005836)	RAB11FIP5A (ENSNFUG00015005839)	dkc1 (ENSNFUG00015005847)	cinp (ENSNFUG00015005869)	ZNF839 (ENSNFUG00015005891)	TECPR2 (ENSNFUG00015005908)	TRAF3 (ENSNFUG00015005951)	MIPOL1 (ENSNFUG00015006068)	C5orf63 (ENSNFUG00015006073)	FOXA1 (ENSNFUG00015006080)	ENSNFUG00015006084	SEC23A (ENSNFUG00015006109)
Cyprinodontoidei	ANCESTRAL SPECIES	196																ENSGT00940000157439.a ##22	ENSGT00510000046608.A
Poeciliinae	ANCESTRAL SPECIES	1						ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160271	ENSGT00940000176920	ENSGT00940000158693.A	ENSGT00950000183183.a	ENSGT00940000156447.a.b	ENSGT00950000183197.a	ENSGT00940000160534	ENSGT00940000157439.a ##22	ENSGT00510000046608.A	ENSGT00940000156584.e.b	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000154700	ENSGT00950000182838.A.a.a	ENSGT00940000167194	ENSGT00940000160972	ENSGT00940000158268.b	ENSGT00440000037417.B.a	ENSGT00390000014700.b.a.b.b.a	ENSGT00950000183207.b.ab	ENSGT00940000164903.b	ENSGT00940000159091
Poecilia	ANCESTRAL SPECIES	18							ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160271	ENSGT00940000176920	ENSGT00940000158693.A	ENSGT00950000183183.a	ENSGT00940000156447.a.b	ENSGT00950000183197.a	ENSGT00940000160534	ENSGT00940000157439.a ##22	ENSGT00510000046608.A	ENSGT00940000156584.e.b	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000154700	ENSGT00950000182838.A.a.a	ENSGT00940000167194	ENSGT00940000160972	ENSGT00940000158268.b	ENSGT00440000037417.B.a	ENSGT00390000014700.b.a.b.b.a	ENSGT00950000183207.b.ab	ENSGT00940000164903.b	ENSGT00940000159091
NAME_6	ANCESTRAL SPECIES	459													ENSGT00940000156447.a.b	ENSGT00950000183197.a	ENSGT00940000160534.g	ENSGT00940000157439.a ##22	ENSGT00510000046608.A	ENSGT00940000156584.e.b
Sailfin molly	MODERN SPECIES	2279																ENSPLAG00000011417 ##22	gps1 (ENSPLAG00000011348)
Amazon molly	MODERN SPECIES	426													TANC2 (ENSPFOG00000016859)	cyb561 (ENSPFOG00000016904)	HDAC5 (ENSPFOG00000016912)	ENSPFOG00000017009 ##22	gps1 (ENSPFOG00000017069)	col1a1a (ENSPFOG00000017127)
Guppy	MODERN SPECIES	460				ENSPREG00000005421	ENSPREG00000005455	ENSPREG00000005467	snrnp70 (ENSPREG00000005486)	ENSPREG00000005532	ABCC1 (ENSPREG00000005595)	ENSPREG00000005730	ENSPREG00000005748	trpm4a (ENSPREG00000005766)	zgc:86896 (ENSPREG00000005823)	cyb561 (ENSPREG00000005865)	HDAC5 (ENSPREG00000005884)	ENSPREG00000005951 ##22	gps1 (ENSPREG00000006074)	col1a1a (ENSPREG00000006150)	ENSPREG00000006208	OARD1 (ENSPREG00000006215)	ENSPREG00000006234	ENSPREG00000006248	AP2A1 (ENSPREG00000006262)	prmt1 (ENSPREG00000006311)	pex12 (ENSPREG00000006349)	rras (ENSPREG00000006363)	prrg2 (ENSPREG00000006381)	ENSPREG00000006415	ENSPREG00000006456	ENSPREG00000006467	ENSPREG00000006487
Platyfish	MODERN SPECIES	7										ENSXMAG00000019947	trpm4a (ENSXMAG00000017323)	zgc:86896 (ENSXMAG00000000643)	TANC2 (ENSXMAG00000017382)	cyb561 (ENSXMAG00000017402)	HDAC5 (ENSXMAG00000017412)	ENSXMAG00000017472 ##22	gps1 (ENSXMAG00000017484)	col1a1a (ENSXMAG00000016028)	ENSXMAG00000022298	ENSXMAG00000010848	pex12 (ENSXMAG00000010849)	prmt1 (ENSXMAG00000010853)	AP2A1 (ENSXMAG00000002745)	rras (ENSXMAG00000025428)	prrg2 (ENSXMAG00000002785)	PRR12 (ENSXMAG00000027073)	ENSXMAG00000021756	aoc2 (ENSXMAG00000002813)	kcnc3a (ENSXMAG00000002823)	ube2z (ENSXMAG00000002829)	eve1 (ENSXMAG00000002833)
NAME_4	ANCESTRAL SPECIES																	ENSGT00940000157439.a ##22
Mummichog	MODERN SPECIES	1194																ENSFHEG00000017365 ##22
Sheepshead minnow	MODERN SPECIES	829									col1a1a (ENSCVAG00000010540)	ENSCVAG00000010485	pex12 (ENSCVAG00000010480)	HDAC5 (ENSCVAG00000010474)	ENSCVAG00000010341	ENSCVAG00000010330	TANC2 (ENSCVAG00000010312)	ENSCVAG00000010272 ##22	ENSCVAG00000010111
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000154152.a.b	ENSGT01090000261037	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000153500.a.b.f	ENSGT00940000155148.a.a	ENSGT00950000183183.a	ENSGT00940000156833.b
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693	ENSGT01090000260003.a.b.b.a.b	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000153500.a.b.f	ENSGT00940000155148.a.a	ENSGT00950000183183.a	ENSGT00940000156833.b
Anabantaria	ANCESTRAL SPECIES	40	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693	ENSGT00950000183098.a.a	ENSGT00950000183207.b
Zig-zag eel	MODERN SPECIES	22	nfe2l1a (ENSMAMG00000001353) ##15	CBX1 (ENSMAMG00000024877)	hoxb1a (ENSMAMG00000001283) #12	hoxb2a (ENSMAMG00000001273) #10	hoxb3a (ENSMAMG00000001254) #9	hoxb4a (ENSMAMG00000025071) #8	HOXB5 (ENSMAMG00000001208) #7	ENSMAMG00000001180	hoxb8a (ENSMAMG00000001168)	hoxb9a (ENSMAMG00000024808)	hoxb13a (ENSMAMG00000001067)	eve1 (ENSMAMG00000001056)	atp5mc1 (ENSMAMG00000001045)	ENSMAMG00000025952	ube2z (ENSMAMG00000026553)	ENSMAMG00000000963 ##22	ENSMAMG00000000938 ##24	ENSMAMG00000025418 ##25	ENSMAMG00000000486	ENSMAMG00000000466	ENSMAMG00000000444	ENSMAMG00000000429
Anabantoidei	ANCESTRAL SPECIES	25	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT01030000234606.a.b.i.a	ENSGT00940000167671	ENSGT00390000004690.a.a
Climbing perch	MODERN SPECIES	21	CBX1 (ENSATEG00000009423)	hoxb1a (ENSATEG00000009452) #12	hoxb2a (ENSATEG00000009523) #10	hoxb3a (ENSATEG00000009502) #9	hoxb4a (ENSATEG00000009570) #8	HOXB5 (ENSATEG00000009580) #7	ENSATEG00000009588	hoxb7a (ENSATEG00000025199)	hoxb8a (ENSATEG00000029376)	hoxb9a (ENSATEG00000009646)	hoxb13a (ENSATEG00000009662)	eve1 (ENSATEG00000009682)	atp5mc1 (ENSATEG00000030107)	ube2z (ENSATEG00000009723)	ENSATEG00000009778	ENSATEG00000009789 ##22	ENSATEG00000028175 ##24	ENSATEG00000009928	ENSATEG00000009941 ##25	ENSATEG00000009990	ENSATEG00000010012	ENSATEG00000010020	ENSATEG00000010046	ENSATEG00000010051	ENSATEG00000010065	ENSATEG00000010085	ENSATEG00000010101	ENSATEG00000010121	ENSATEG00000010161	ENSATEG00000027794	ENSATEG00000010181
Siamese fighting fish	MODERN SPECIES	19	JUP (ENSBSLG00000006198)	ENSBSLG00000007988	ALDOA (ENSBSLG00000008000)	gps1 (ENSBSLG00000008055)	pdxdc1 (ENSBSLG00000008666)	gspt1l (ENSBSLG00000008803)	ENSBSLG00000011124	RRN3 (ENSBSLG00000011137)	ENSBSLG00000011426	COG1 (ENSBSLG00000011433)	rgs9a (ENSBSLG00000011483)	gna13a (ENSBSLG00000011687)	glyr1 (ENSBSLG00000011834)	rogdi (ENSBSLG00000011975)	zgc:86896 (ENSBSLG00000012323)	OSBPL7 (ENSBSLG00000012366) ##22	ENSBSLG00000012607 ##24	pdk2b (ENSBSLG00000012626) ##25	kcnc3a (ENSBSLG00000012726)	ENSBSLG00000012744	aoc2 (ENSBSLG00000012746)	ARL4D (ENSBSLG00000012747)	ENSBSLG00000012748	ENSBSLG00000012750	G6PC1 (ENSBSLG00000012754)	yipf2 (ENSBSLG00000012776)	timm29 (ENSBSLG00000012779)	ENSBSLG00000012784	ENSBSLG00000012785	rpl23 (ENSBSLG00000012789)	ENSBSLG00000012797
Carangaria	ANCESTRAL SPECIES	4	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693	ENSGT01090000260003.a.b.b.a.b	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000153500.a.b.f	ENSGT00940000155148.a.a	ENSGT00950000183183.a	ENSGT00940000156833.b
Carangaria_A	ANCESTRAL SPECIES	46	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01090000260003.a.b.b.a.b	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000153500.a.b.f	ENSGT00940000155148.a.a	ENSGT00950000183183.a	ENSGT00940000156833.b	ENSGT00940000155575.i.b
Seriola	ANCESTRAL SPECIES	247																ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24
Greater amberjack	MODERN SPECIES	169																ENSSDUG00000018044 ##22	ENSSDUG00000018010	ENSSDUG00000017991 ##24	ENSSDUG00000017974	ENSSDUG00000017853	kcnc3a (ENSSDUG00000017819)	kcnc3a (ENSSDUG00000017802)	ENSSDUG00000017792	aoc2 (ENSSDUG00000017783)	ENSSDUG00000017774	ENSSDUG00000017699	ENSSDUG00000017682	ENSSDUG00000017663	ENSSDUG00000017648	ENSSDUG00000017636	ENSSDUG00000017627
Yellowtail amberjack	MODERN SPECIES	2968															ENSSLDG00000001407	ENSSLDG00000001420 ##22	ENSSLDG00000001513 ##24	ECHS1 (ENSSLDG00000001555)	dbi (ENSSLDG00000001582)	zgc:101851 (ENSSLDG00000001607)	STEAP3 (ENSSLDG00000001677)	C1QL2 (ENSSLDG00000001685)	ENSSLDG00000001757	EN1 (ENSSLDG00000001864)	insig2 (ENSSLDG00000001871)	si:dkey-251i10.3 (ENSSLDG00000001899)	ccdc93 (ENSSLDG00000001983)	ENSSLDG00000002027	ENSSLDG00000002094	ENSSLDG00000002107	pknox1.1 (ENSSLDG00000002133)
Barramundi perch	MODERN SPECIES	247	hoxb1a (ENSLCAG00010003751) #12	hoxb2a (ENSLCAG00010003756) #10	hoxb3a (ENSLCAG00010003753) #9	hoxb4a (ENSLCAG00010003757) #8	HOXB5 (ENSLCAG00010003760) #7	ENSLCAG00010003761	hoxb7a (ENSLCAG00010003762)	hoxb8a (ENSLCAG00010003765)	hoxb9a (ENSLCAG00010003766)	hoxb13a (ENSLCAG00010003768)	eve1 (ENSLCAG00010003771)	atp5mc1 (ENSLCAG00010003778)	ube2z (ENSLCAG00010003789)	ENSLCAG00010003797	ENSLCAG00010003802	ENSLCAG00010003819 ##22	ENSLCAG00010003853 ##24	pdk2b (ENSLCAG00010004033) ##25	kcnc3a (ENSLCAG00010004844)
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00390000008631.b	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000153500.a.b.f	ENSGT00940000155148.a.a	ENSGT00950000183183.a	ENSGT00940000156833.b	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a
Tongue sole	MODERN SPECIES	8	eve1 (ENSCSEG00000012743)	hoxb9a (ENSCSEG00000012735)	hoxb8a (ENSCSEG00000012733)	ENSCSEG00000012724	hoxb4a (ENSCSEG00000012720) #8	hoxb3a (ENSCSEG00000012710) #9	hoxb2a (ENSCSEG00000012699) #10	hoxb1a (ENSCSEG00000012675) #12	ENSCSEG00000012670	CBX1 (ENSCSEG00000012663)	nfe2l1a (ENSCSEG00000012657) ##15	praf2 (ENSCSEG00000012654)	copz2 (ENSCSEG00000012630) #16	atp5mc1 (ENSCSEG00000012587)	ube2z (ENSCSEG00000012583)	OSBPL7 (ENSCSEG00000012572) ##22	ENSCSEG00000012560 ##24	PDK2 (ENSCSEG00000012542) ##25	kcnc3a (ENSCSEG00000012442)	ENSCSEG00000012418	ENSCSEG00000012414	ENSCSEG00000012411	ENSCSEG00000012407	ENSCSEG00000012404	aoc2 (ENSCSEG00000012374)	ENSCSEG00000012343	ENSCSEG00000012326	ENSCSEG00000012313	ARL4D (ENSCSEG00000012307)	zc2hc1a (ENSCSEG00000012298)	prkar1aa (ENSCSEG00000012288)
Turbot	MODERN SPECIES	10	copz2 (ENSSMAG00000016368) #16	ENSSMAG00000016346	nfe2l1a (ENSSMAG00000016270) ##15	CBX1 (ENSSMAG00000016205)	hoxb1a (ENSSMAG00000025836) #12	hoxb2a (ENSSMAG00000016195) #10	hoxb4a (ENSSMAG00000016160) #8	hoxb3a (ENSSMAG00000016177) #9	HOXB5 (ENSSMAG00000028467) #7	ENSSMAG00000023799	hoxb8a (ENSSMAG00000016133)	hoxb9a (ENSSMAG00000033679)	hoxb13a (ENSSMAG00000016117)	eve1 (ENSSMAG00000016101)	ube2z (ENSSMAG00000015917)	ENSSMAG00000015802 ##22	ENSSMAG00000029714 ##24	ENSSMAG00000015690	ENSSMAG00000015638	ENSSMAG00000034009	ENSSMAG00000015596	rbfox1 (ENSSMAG00000015505)	ENSSMAG00000021939	ENSSMAG00000015399	fbxl16 (ENSSMAG00000015368)	ENSSMAG00000015264	ENSSMAG00000015252	ENSSMAG00000015238	ENSSMAG00000015200	ENSSMAG00000015115	ENSSMAG00000015101
Eupercaria	ANCESTRAL SPECIES	3	ENSGT01090000261037	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161108	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693
Tetraodontidae	ANCESTRAL SPECIES	55	ENSGT00390000004405.b #16	ENSGT00390000008631.b	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24
Fugu	MODERN SPECIES	17	nfe2l1a (ENSTRUG00000010088) ##15	CBX1 (ENSTRUG00000020253)	hoxb1a (ENSTRUG00000010036) #12	hoxb2a (ENSTRUG00000009966) #10	hoxb4a (ENSTRUG00000021234) #8	hoxb3a (ENSTRUG00000009707) #9	HOXB5 (ENSTRUG00000021471) #7	ENSTRUG00000001069	ENSTRUG00000033087	hoxb8a (ENSTRUG00000028207)	hoxb9a (ENSTRUG00000002255)	hoxb13a (ENSTRUG00000023485)	eve1 (ENSTRUG00000009382)	atp5mc1 (ENSTRUG00000009147)	ube2z (ENSTRUG00000032441)	ENSTRUG00000008690 ##22	ENSTRUG00000020745 ##24	polr2f (ENSTRUG00000021130)	sox10 (ENSTRUG00000008350)	ENSTRUG00000008188	kdelr3 (ENSTRUG00000022968)	ENSTRUG00000032837	ENSTRUG00000008033	ccdc134 (ENSTRUG00000032166)	ENSTRUG00000032596	ENSTRUG00000030440	srebf2 (ENSTRUG00000007413)	nol12 (ENSTRUG00000029219)	triobpb (ENSTRUG00000007320)	ndufa6 (ENSTRUG00000007261)	SMDT1 (ENSTRUG00000023372)
Tetraodon	MODERN SPECIES	26	copz2 (ENSTNIG00000019641) #16	praf2 (ENSTNIG00000003149)	nfe2l1a (ENSTNIG00000003150) ##15	CBX1 (ENSTNIG00000003151)	hoxb1a (ENSTNIG00000003341) #12	hoxb2a (ENSTNIG00000000338) #10	hoxb3a (ENSTNIG00000010821) #9	ENSTNIG00000001758	hoxb4a (ENSTNIG00000001757) #8	HOXB5 (ENSTNIG00000000158) #7	hoxb9a (ENSTNIG00000010822)	hoxb13a (ENSTNIG00000000761)	eve1 (ENSTNIG00000000716)	atp5mc1 (ENSTNIG00000010823)	ube2z (ENSTNIG00000010824)	ENSTNIG00000010825 ##22	TBKBP1 (ENSTNIG00000010826) ##24	polr2f (ENSTNIG00000010827)	sox10 (ENSTNIG00000010828)	ENSTNIG00000010829	kdelr3 (ENSTNIG00000010830)	ENSTNIG00000001262	ENSTNIG00000010831	ENSTNIG00000010832	dtd2 (ENSTNIG00000001708)	ENSTNIG00000010833	DTD2 (ENSTNIG00000010834)	ENSTNIG00000006223	srebf2 (ENSTNIG00000010835)	nol12 (ENSTNIG00000010836)	triobpb (ENSTNIG00000010837)
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT01090000261037	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161108	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693
Ballan wrasse	MODERN SPECIES	533									mettl23 (ENSLBEG00000028561)	jmjd6 (ENSLBEG00000028560)	ENSLBEG00000028558	cln3 (ENSLBEG00000028555)	ppp4cb (ENSLBEG00000028554)	aldh3b1 (ENSLBEG00000028553)	ube2z (ENSLBEG00000028552)	ENSLBEG00000028546 ##22	ENSLBEG00000028543 ##24	kank2 (ENSLBEG00000028541)	HBE1 (ENSLBEG00000028519)	HBE1 (ENSLBEG00000028483)	ENSLBEG00000028392	HBE1 (ENSLBEG00000028331)	ENSLBEG00000028318	ENSLBEG00000028315	pex12 (ENSLBEG00000028308)	HDAC5 (ENSLBEG00000028299)	cyb561 (ENSLBEG00000028291)	TANC2 (ENSLBEG00000028261)
Eupecaria_B	ANCESTRAL SPECIES		ENSGT01090000261037	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161108	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01090000260003.a.b.b.a.b	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000153500.a.b.f	ENSGT00940000155148.a.a	ENSGT00950000183183.a	ENSGT00940000156833.b
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000154152.a.b	ENSGT01090000261037	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000153500.a.b.f	ENSGT00940000155148.a.a	ENSGT00950000183183.a	ENSGT00940000156833.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	26	ENSGT00940000154152.a.b	ENSGT01090000261037	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01100000263693	ENSGT01090000260003.a.b.b.a.b	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000153500.a.b.f	ENSGT00940000155148.a.a	ENSGT00950000183183.a
European seabass	MODERN SPECIES	21	ENSDLAG00005033551	ENSDLAG00005024662	hoxb1a (ENSDLAG00005024658) #12	hoxb2a (ENSDLAG00005027794) #10	hoxb4a (ENSDLAG00005024639) #8	HOXB5 (ENSDLAG00005024633) #7	ENSDLAG00005029789	hoxb3a (ENSDLAG00005024643) #9	hoxb7a (ENSDLAG00005030569)	hoxb8a (ENSDLAG00005031830)	hoxb13a (ENSDLAG00005029232)	eve1 (ENSDLAG00005032886)	atp5mc1 (ENSDLAG00005033252)	ube2z (ENSDLAG00005024583)	ENSDLAG00005024569	ENSDLAG00005024552 ##22	ENSDLAG00005033674 ##24	ENSDLAG00005024545	ENSDLAG00005015851	ENSDLAG00005033637	ENSDLAG00005030687	ENSDLAG00005033367	ENSDLAG00005033811	ENSDLAG00005032733	ENSDLAG00005017346	ENSDLAG00005032181 #28	ENSDLAG00005017138	ENSDLAG00005031697 ##27	nsfa (ENSDLAG00005016019) ##30	ENSDLAG00005016002	ENSDLAG00005032908
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005009400	hoxb1a (ENSLCRG00005009402) #12	hoxb2a (ENSLCRG00005009404) #10	hoxb3a (ENSLCRG00005009406) #9	hoxb4a (ENSLCRG00005009408) #8	HOXB5 (ENSLCRG00005009410) #7	ENSLCRG00005009412	hoxb7a (ENSLCRG00005009413)	hoxb8a (ENSLCRG00005009416)	hoxb9a (ENSLCRG00005009434)	hoxb13a (ENSLCRG00005009437)	eve1 (ENSLCRG00005009438)	atp5mc1 (ENSLCRG00005009440)	ube2z (ENSLCRG00005009442)	ENSLCRG00005009443	ENSLCRG00005009449 ##22	ENSLCRG00005009536 ##24	pdk2b (ENSLCRG00005009537) ##25	kcnc3a (ENSLCRG00005009547)	ENSLCRG00005009550	PSME3 (ENSLCRG00005009551)	aoc2 (ENSLCRG00005009552)	ENSLCRG00005009553	G6PC1 (ENSLCRG00005009554)	ENSLCRG00005009595	ENSLCRG00005009598	ARL4D (ENSLCRG00005009599)	rac3a (ENSLCRG00005009601)	prkar1aa (ENSLCRG00005009602)	zgc:86896 (ENSLCRG00005009617)	wipi1 (ENSLCRG00005009626)
Gilthead seabream	MODERN SPECIES	15	ENSSAUG00010003436	ENSSAUG00010003433	hoxb1a (ENSSAUG00010003422) #12	hoxb2a (ENSSAUG00010003420) #10	hoxb3a (ENSSAUG00010003419) #9	hoxb4a (ENSSAUG00010003417) #8	HOXB5 (ENSSAUG00010003414) #7	ENSSAUG00010003413	hoxb8a (ENSSAUG00010003412)	ENSSAUG00010003410	hoxb9a (ENSSAUG00010003409)	hoxb13a (ENSSAUG00010003401)	eve1 (ENSSAUG00010003399)	ATP5G3 (ENSSAUG00010003390)	ube2z (ENSSAUG00010003377)	ENSSAUG00010003303 ##22	ENSSAUG00010003287 ##24	ENSSAUG00010003282	ENSSAUG00010003280	PDK2 (ENSSAUG00010002937) ##25	ENSSAUG00010002879	kcnc3a (ENSSAUG00010002820)	ENSSAUG00010007603	ENSSAUG00010007259	ENSSAUG00010007253	rpl23 (ENSSAUG00010007227)	ENSSAUG00010007225	ENSSAUG00010007224	smarce1 (ENSSAUG00010007158)	ENSSAUG00010007155	ENSSAUG00010007154
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000154152.a.b.b.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161108	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01090000260003.a.b.b.a.b	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00390000018717.b.a.a	ENSGT00940000154776	ENSGT00940000159138	ENSGT00940000158310	ENSGT00940000160685
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00940000154152.a.b.b.a	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161108	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT00940000160377	ENSGT01100000263525.a.b.a.b	ENSGT00390000005830	ENSGT00940000155904	ENSGT00930000151040.b	ENSGT00390000003249	ENSGT00940000163009.a	ENSGT00550000075089	ENSGT00940000158181.a	ENSGT00940000153536.a.b.b.a.b	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d
Lumpfish	MODERN SPECIES	23	copz2 (ENSCLMG00005020417) #16	praf2 (ENSCLMG00005020419)	nfe2l1a (ENSCLMG00005020425) ##15	CBX1 (ENSCLMG00005020426)	hoxb1a (ENSCLMG00005020435) #12	hoxb2a (ENSCLMG00005020438) #10	hoxb3a (ENSCLMG00005020439) #9	hoxb6a (ENSCLMG00005004237)	hoxb7a (ENSCLMG00005004242)	hoxb8a (ENSCLMG00005004245)	hoxb9a (ENSCLMG00005004249)	hoxb13a (ENSCLMG00005004250)	eve1 (ENSCLMG00005004254)	atp5mc1 (ENSCLMG00005004257)	ube2z (ENSCLMG00005004286)	ENSCLMG00005004333 ##22	carm1 (ENSCLMG00005004546)	si:ch211-286b5.5 (ENSCLMG00005005007)	clpp (ENSCLMG00005005010)	aldh3b1 (ENSCLMG00005005012)	ppp4cb (ENSCLMG00005005015)	cln3 (ENSCLMG00005005021)	dus1l (ENSCLMG00005005025)	SLC16A3 (ENSCLMG00005005031)	CSNK1D (ENSCLMG00005005033)	engase (ENSCLMG00005005038)	scpep1 (ENSCLMG00005005050)	coil (ENSCLMG00005006195)	rab11fip4a (ENSCLMG00005006197)	igf2bp1 (ENSCLMG00005006201)	ENSCLMG00005006215
Stickleback	MODERN SPECIES	10	prr15la (ENSGACG00000005720) #19	copz2 (ENSGACG00000005661) #16	praf2 (ENSGACG00000005654)	nfe2l1a (ENSGACG00000005644) ##15	CBX1 (ENSGACG00000005637)	hoxb1a (ENSGACG00000005635) #12	hoxb2a (ENSGACG00000005633) #10	hoxb3a (ENSGACG00000005631) #9	hoxb4a (ENSGACG00000005628) #8	HOXB5 (ENSGACG00000005626) #7	ENSGACG00000005623	ENSGACG00000005622	hoxb13a (ENSGACG00000005617)	atp5mc1 (ENSGACG00000005605)	ube2z (ENSGACG00000005589)	ENSGACG00000005576 ##22	ENSGACG00000005568 ##24	carm1 (ENSGACG00000005531)	si:ch211-286b5.5 (ENSGACG00000005522)	clpp (ENSGACG00000005502)	aldh3b1 (ENSGACG00000005487)	ppp4cb (ENSGACG00000005465)	cln3 (ENSGACG00000005447)	ENSGACG00000005444	dus1l (ENSGACG00000005403)	SLC16A3 (ENSGACG00000005400)	CSNK1D (ENSGACG00000005394)	engase (ENSGACG00000005388)	scpep1 (ENSGACG00000005359)	coil (ENSGACG00000005339)	rab11fip4a (ENSGACG00000005333)
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00940000154152.a.b.b.b	ENSGT00940000166856 #12	ENSGT00940000155029.c.b #10	ENSGT00940000159774 #9	ENSGT00940000162072 #8	ENSGT00940000158354.c.b #7	ENSGT00940000165065.a	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000157981.a.b	ENSGT00940000159091	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00940000164903.b	ENSGT01090000260003.a.b.b.a.b	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00390000018717.b.a.a	ENSGT00940000154776	ENSGT00940000159138	ENSGT00940000158310	ENSGT00940000160685
Channel bull blenny	MODERN SPECIES	22	praf2 (ENSCGOG00000000740)	nfe2l1a (ENSCGOG00000000742) ##15	hoxb1a (ENSCGOG00000000745) #12	hoxb2a (ENSCGOG00000000750) #10	hoxb3a (ENSCGOG00000000749) #9	hoxb4a (ENSCGOG00000000751) #8	HOXB5 (ENSCGOG00000000752) #7	ENSCGOG00000000754	hoxb7a (ENSCGOG00000000755)	hoxb8a (ENSCGOG00000000757)	hoxb9a (ENSCGOG00000000760)	hoxb13a (ENSCGOG00000000761)	eve1 (ENSCGOG00000000762)	atp5mc1 (ENSCGOG00000000767)	ube2z (ENSCGOG00000000775)	ENSCGOG00000000829 ##22	ENSCGOG00000000864 ##24	pdk2b (ENSCGOG00000000867) ##25	kcnc3a (ENSCGOG00000000895)	ENSCGOG00000000901	aoc2 (ENSCGOG00000000902)	ENSCGOG00000000904	ENSCGOG00000000907	ENSCGOG00000000912	ENSCGOG00000000915	ARL4D (ENSCGOG00000000917)	hao1 (ENSCGOG00000000918)	smg1 (ENSCGOG00000000958)	fbxl16 (ENSCGOG00000001202)	ENSCGOG00000001236	rbfox1 (ENSCGOG00000001784)
Pike perch	MODERN SPECIES	107	CBX1 (ENSSLUG00000014227)	hoxb1a (ENSSLUG00000014182) #12	hoxb2a (ENSSLUG00000014173) #10	hoxb3a (ENSSLUG00000014170) #9	hoxb4a (ENSSLUG00000014165) #8	HOXB5 (ENSSLUG00000025807) #7	ENSSLUG00000025803	hoxb7a (ENSSLUG00000025801)	hoxb8a (ENSSLUG00000025797)	hoxb9a (ENSSLUG00000025792)	hoxb13a (ENSSLUG00000025791)	eve1 (ENSSLUG00000025790)	atp5mc1 (ENSSLUG00000025787)	ube2z (ENSSLUG00000025783)	ENSSLUG00000025782	ENSSLUG00000025772 ##22	PDK2 (ENSSLUG00000025753) ##25	kcnc3a (ENSSLUG00000025735)	ENSSLUG00000025731	PSME3 (ENSSLUG00000025729)	aoc2 (ENSSLUG00000025727)
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005000614	ENSMMDG00005000609	CBX1 (ENSMMDG00005000606)	nfe2l1a (ENSMMDG00005000602) ##15	praf2 (ENSMMDG00005000597)	copz2 (ENSMMDG00005000593) #16	prr15la (ENSMMDG00005000591) #19	ENSMMDG00005000585	ENSMMDG00005000582	ENSMMDG00005000579	ENSMMDG00005000551	ENSMMDG00005000543	ENSMMDG00005000539	ENSMMDG00005000535	ENSMMDG00005000532	ENSMMDG00005000503 ##22	ENSMMDG00005000479 ##24	pdk2b (ENSMMDG00005000434) ##25	ENSMMDG00005004944	ENSMMDG00005004901	ENSMMDG00005004899	ENSMMDG00005004893	ENSMMDG00005004884	PPP1R9B (ENSMMDG00005004835)	ENSMMDG00005004813	ENSMMDG00005004797	ENSMMDG00005004793	ENSMMDG00005004790	ENSMMDG00005004788	ENSMMDG00005004751	ENSMMDG00005004736
Cod	MODERN SPECIES	11	ENSGMOG00000022387	flr (ENSGMOG00000009584)	si:ch211-76l23.7 (ENSGMOG00000030559)	alg1 (ENSGMOG00000009558)	ENSGMOG00000027285	eef2kmt (ENSGMOG00000028018)	ENSGMOG00000009530	ENSGMOG00000009498	ENSGMOG00000034048	ENSGMOG00000027953	ENSGMOG00000033267	ENSGMOG00000026845	ENSGMOG00000030631	ENSGMOG00000031173	ENSGMOG00000030174	ENSGMOG00000011979 ##22	ENSGMOG00000008472	ENSGMOG00000033574	ENSGMOG00000034208	ENSGMOG00000023352	ENSGMOG00000000748	ENSGMOG00000022328	cyb561 (ENSGMOG00000007289)	ENSGMOG00000007638	ENSGMOG00000034557	ENSGMOG00000028304	ENSGMOG00000032340	ENSGMOG00000029666	ENSGMOG00000008832	ENSGMOG00000013717	ENSGMOG00000028718
Protacanthopterygii	ANCESTRAL SPECIES	5	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564	ENSGT00940000159029	ENSGT00940000163268.e	ENSGT00940000161386	ENSGT00940000161529	ENSGT00940000165065.b	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000166856 #12	ENSGT00940000154152.b.a	ENSGT00950000182892.a.b.a.b.b ##15	ENSGT00390000004405.b #16	ENSGT00940000154534.b.a #19	ENSGT00940000157439.a ##22	ENSGT00940000153704.B.d ##24	ENSGT01030000234646.B.a.a.a.a.b ##25	ENSGT00390000005602	ENSGT00390000006679.b	ENSGT01100000263525.b.a	ENSGT00940000156584.e.b	ENSGT00940000158833.a.a	ENSGT00390000017328.a.a	ENSGT00940000153653.a.a	ENSGT00940000154360.B	ENSGT00950000183145.A.b.a	ENSGT00940000165576.a.b	ENSGT00670000098179.e	ENSGT00940000160643.i	ENSGT00940000155348.B.c
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	917												ENSGT00940000154152.b.a.b	ENSGT00950000182892.a.b.a.b.b.d ##15	ENSGT00390000004405.b.c #16	ENSGT00940000154534.b.a.j #19	ENSGT00940000157439.a.c ##22	ENSGT00940000153704.B.d.b.a.a ##24	ENSGT01030000234646.B.a.a.a.a.b.e ##25
Salmoninae_a	ANCESTRAL SPECIES	77	ENSGT00940000159029.c	ENSGT00940000158266.g.b	ENSGT00940000161386.c	ENSGT00940000161529.w.a	ENSGT00940000161230.d	ENSGT00940000161108.e.a	ENSGT00940000158354.d.e ##7	ENSGT00940000162072.b #8	ENSGT00940000159774.c.a #9	ENSGT00940000155029.c.b.c #10	ENSGT00940000166856.l #12	ENSGT00940000154152.b.a.b	ENSGT00950000182892.a.b.a.b.b.d ##15	ENSGT00390000004405.b.c #16	ENSGT00940000154534.b.a.j #19	ENSGT00940000157439.a.c ##22	ENSGT00940000153704.B.d.b.a.a ##24	ENSGT01030000234646.B.a.a.a.a.b.e ##25	ENSGT00390000006679.b.l	ENSGT01100000263525.b.a.l	ENSGT00940000156584.e.b.d.a	ENSGT00940000158833.a.a.c	ENSGT00940000175578.a.a	ENSGT00940000175578.a.b.b	ENSGT00390000017328.a.a.l	ENSGT00940000153653.a.a.o	ENSGT00940000154360.B.b	ENSGT00950000183145.A.a.n	ENSGT00940000165576.a.b.e.a	ENSGT01050000245366.a	ENSGT00940000160643.i.d
Salmo	ANCESTRAL SPECIES	55	ENSGT00940000159029.c	ENSGT00940000158266.g.a	ENSGT00940000161386.c	ENSGT00940000161529.w.a	ENSGT00940000161230.d	ENSGT00940000161108.e.a	ENSGT00940000158354.d.e ##7	ENSGT00940000162072.b #8	ENSGT00940000159774.c.a #9	ENSGT00940000155029.c.b.c #10	ENSGT00940000166856.l #12	ENSGT00940000154152.b.a.b	ENSGT00950000182892.a.b.a.b.b.d ##15	ENSGT00390000004405.b.c #16	ENSGT00940000154534.b.a.j #19	ENSGT00940000157439.a.c ##22	ENSGT00940000153704.B.d.b.b ##24	ENSGT01030000234646.B.a.a.a.a.b.e ##25	ENSGT00390000006679.b.l	ENSGT01100000263525.b.a.l	ENSGT00940000156584.e.b.d.a	ENSGT00940000158833.a.a.c	ENSGT00940000175578.a.a	ENSGT00940000175578.a.b.b	ENSGT00940000153653.a.a.o	ENSGT00940000154360.B.b	ENSGT00950000183145.A.a.n	ENSGT00940000165576.a.b.e.a	ENSGT01050000245366.a	ENSGT00940000160643.i.d	ENSGT00940000155348.B.c.d
River trout	MODERN SPECIES	25	ENSSTUG00000044034	hoxb9a (ENSSTUG00000044028)	hoxb8a (ENSSTUG00000044019)	hoxb7a (ENSSTUG00000044016)	hoxb6a (ENSSTUG00000044003)	hoxb5a (ENSSTUG00000043999) ##7	hoxb4a (ENSSTUG00000043991) #8	hoxb3a (ENSSTUG00000043976) #9	hoxb2a (ENSSTUG00000043971) #10	hoxb1a (ENSSTUG00000043969) #12	cbx1a (ENSSTUG00000043925)	nfe2l1a (ENSSTUG00000043916) ##15	copz2 (ENSSTUG00000043854) #16	ENSSTUG00000043849	prr15la (ENSSTUG00000043845) #19	OSBPL7 (ENSSTUG00000043790) ##22	pdk2b (ENSSTUG00000043683) ##25	nags (ENSSTUG00000043665)	ENSSTUG00000043649	ENSSTUG00000043642	col1a1a (ENSSTUG00000043409)	PPP1R9B (ENSSTUG00000042964)	ENSSTUG00000042925	ENSSTUG00000042917	psmd3 (ENSSTUG00000042696)	ENSSTUG00000042670	ENSSTUG00000042628	ENSSTUG00000042607	ENSSTUG00000042601	rarab (ENSSTUG00000042328)	ENSSTUG00000042287
Atlantic salmon	MODERN SPECIES	22	ube2z (ENSSSAG00000004597)	ENSSSAG00000004542	eve1 (ENSSSAG00000004524)	hoxb13aa (ENSSSAG00000004515)	ENSSSAG00000004507	HoxB9aa (ENSSSAG00000121194)	hxb7a (ENSSSAG00000004471)	hoxb5a (ENSSSAG00000004441) ##7	hoxb3a (ENSSSAG00000004371) #9	hoxb2a (ENSSSAG00000111200) #10	hoxb1aa (ENSSSAG00000004337) #12	cbx1a (ENSSSAG00000091490)	nfe2l1a (ENSSSAG00000004277) ##15	copz2 (ENSSSAG00000096429) #16	prr15la (ENSSSAG00000109719) #19	ENSSSAG00000004103 ##22	ENSSSAG00000002431	ENSSSAG00000097020 ##24	ENSSSAG00000003916 ##25	ENSSSAG00000089054	ENSSSAG00000085080	ENSSSAG00000003820	ENSSSAG00000006759	ENSSSAG00000109575	ENSSSAG00000003600	ENSSSAG00000096416	psd3 (ENSSSAG00000003553)	ENSSSAG00000115730	ENSSSAG00000087633	ENSSSAG00000055478	rarab (ENSSSAG00000055321)
Oncorhynchus	ANCESTRAL SPECIES	33	ENSGT00940000159029.c	ENSGT00940000158266.g.b	ENSGT00940000161386.c	ENSGT00940000161529.w.a	ENSGT00940000161230.d	ENSGT00940000161108.e.a	ENSGT00940000158354.d.e ##7	ENSGT00940000162072.b #8	ENSGT00940000159774.c.a #9	ENSGT00940000155029.c.b.c #10	ENSGT00940000166856.l #12	ENSGT00940000154152.b.a.b	ENSGT00950000182892.a.b.a.b.b.d ##15	ENSGT00390000004405.b.c #16	ENSGT00940000154534.b.a.j #19	ENSGT00940000157439.a.c ##22	ENSGT00940000153704.B.d.b.a.a ##24	ENSGT01030000234646.B.a.a.a.a.b.e ##25	ENSGT00390000006679.b.l	ENSGT01100000263525.b.a.l	ENSGT00940000156584.e.b.d.a	ENSGT00940000158833.a.a.c	ENSGT00940000175578.a.a	ENSGT00390000017328.a.a.l	ENSGT00940000153653.a.a.o	ENSGT00940000154360.B.b	ENSGT00950000183145.A.a.m.b	ENSGT00940000165576.a.b.e.a	ENSGT01050000245366.a	ENSGT00940000160643.i.d	ENSGT00940000155348.B.c.d
Oncorhynchus_a	ANCESTRAL SPECIES	42	ENSGT00940000167564.a	ENSGT00940000159029.c	ENSGT00940000158266.g.b	ENSGT00940000161386.c	ENSGT00940000161529.w.a	ENSGT00940000161230.d	ENSGT00940000158354.d.e ##7	ENSGT00940000162072.b #8	ENSGT00940000159774.c.a #9	ENSGT00940000155029.c.b.c #10	ENSGT00940000166856.l #12	ENSGT00940000154152.b.a.b	ENSGT00950000182892.a.b.a.b.b.d ##15	ENSGT00390000004405.b.d.b.a.b #16	ENSGT00940000154534.b.a.j #19	ENSGT00940000157439.a.c ##22	ENSGT00940000153704.B.d.b.a.a ##24	ENSGT01030000234646.B.a.a.a.a.b.e ##25	ENSGT00390000006679.b.l	ENSGT01100000263525.b.a.l	ENSGT00940000156584.e.b.d.a	ENSGT00940000158833.a.a.c	ENSGT00940000175578.a.a	ENSGT00390000017328.a.a.l	ENSGT00940000153653.a.a.o	ENSGT00940000154360.B.b	ENSGT00950000183145.B.a.a.a.b.b.b	ENSGT00950000183145.A.a.m.b	ENSGT00940000165576.a.b.e.a	ENSGT01050000245366.a	ENSGT00940000160643.i.d
Chinook salmon	MODERN SPECIES	33	atp5mc1 (ENSOTSG00005011385)	hoxb13a (ENSOTSG00005011383)	eve1 (ENSOTSG00005011380)	ENSOTSG00005011376	hoxb9a (ENSOTSG00005011373)	hoxb8a (ENSOTSG00005011370)	hoxb7a (ENSOTSG00005011367)	hoxb5a (ENSOTSG00005011366) ##7	hoxb4a (ENSOTSG00005011363) #8	hoxb2a (ENSOTSG00005011362) #10	hoxb1a (ENSOTSG00005011361) #12	cbx1a (ENSOTSG00005011360)	nfe2l1a (ENSOTSG00005011359) ##15	copz2 (ENSOTSG00005011352) #16	prr15la (ENSOTSG00005011351) #19	OSBPL7 (ENSOTSG00005011327) ##22	ENSOTSG00005011317 ##24	pdk2b (ENSOTSG00005011186) ##25	ENSOTSG00005011183	ENSOTSG00005011182	col1a1a (ENSOTSG00005010996)	PPP1R9B (ENSOTSG00005010989)	ENSOTSG00005010987	psmd3 (ENSOTSG00005010966)	ENSOTSG00005010962	ENSOTSG00005010934	rarab (ENSOTSG00005010921)	ENSOTSG00005010915	mpp2a (ENSOTSG00005010868)	abi3a (ENSOTSG00005010864)	FAM187A (ENSOTSG00005010863)
Coho salmon	MODERN SPECIES	26	hoxb13a (ENSOKIG00005003079)	ENSOKIG00005003074	hoxb9a (ENSOKIG00005003066)	hoxb8a (ENSOKIG00005003059)	hoxb7a (ENSOKIG00005003049)	hoxb5a (ENSOKIG00005003039) ##7	hoxb4a (ENSOKIG00005003033) #8	HOXB3 (ENSOKIG00005003027) #9	hoxb2a (ENSOKIG00005003020) #10	hoxb1a (ENSOKIG00005003017) #12	cbx1a (ENSOKIG00005002994)	ENSOKIG00005002979	nfe2l1a (ENSOKIG00005002972) ##15	copz2 (ENSOKIG00005002937) #16	prr15la (ENSOKIG00005002918) #19	ENSOKIG00005002828 ##22	pdk2b (ENSOKIG00005002702) ##25	ENSOKIG00005002598	ENSOKIG00005002573	col1a1a (ENSOKIG00005002517)	PPP1R9B (ENSOKIG00005002344)	ENSOKIG00005002309	ENSOKIG00005002298	ENSOKIG00005002224	ENSOKIG00005002185	ENSOKIG00005002162	ENSOKIG00005002125	rarab (ENSOKIG00005001924)	ENSOKIG00005001847	pyya (ENSOKIG00005001834)	mpp2a (ENSOKIG00005001791)
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000021407	hoxb9a (ENSOMYG00000021396)	hoxb8a (ENSOMYG00000055816)	hoxb7a (ENSOMYG00000021367)	hoxb6a (ENSOMYG00000021357)	hoxb5a (ENSOMYG00000021351) ##7	hoxb4a (ENSOMYG00000021348) #8	HOXB3 (ENSOMYG00000021314) #9	hoxb2a (ENSOMYG00000021339) #10	hoxb1a (ENSOMYG00000021300) #12	cbx1a (ENSOMYG00000021278)	nfe2l1a (ENSOMYG00000021257) ##15	copz2 (ENSOMYG00000021226) #16	prr15la (ENSOMYG00000021184) #19	ENSOMYG00000059908	ENSOMYG00000021165 ##22	ENSOMYG00000077184 ##24	ENSOMYG00000021069 ##25	ENSOMYG00000052424	ENSOMYG00000055738	ENSOMYG00000021024	ENSOMYG00000055072	col1a1 (ENSOMYG00000020647)	ENSOMYG00000020551	ENSOMYG00000020541	ENSOMYG00000020511	ENSOMYG00000020492	ENSOMYG00000020401	rarab (ENSOMYG00000020321)	ENSOMYG00000063860	pyya (ENSOMYG00000020294)
Huchen	MODERN SPECIES	490												ENSHHUG00000048336	ENSHHUG00000048337	galcb (ENSHHUG00000048338)	prr15la (ENSHHUG00000048362) #19	OSBPL7 (ENSHHUG00000048369) ##22	ENSHHUG00000048384 ##24	ENSHHUG00000048387 ##24	pdk2b (ENSHHUG00000048389) ##25	nags (ENSHHUG00000048421)	ENSHHUG00000048429
Salmoninae	ANCESTRAL SPECIES	250	ENSGT00940000163268.e	ENSGT00940000161386.d	ENSGT00940000161529.w.b	ENSGT00940000161230.c	ENSGT00940000161108.e.b	ENSGT00940000158354.d.f ##7	ENSGT00940000162072.a #8	ENSGT00940000159774.c.b #9	ENSGT00940000155029.c.b.d #10	ENSGT00940000166856.k #12	ENSGT00940000154152.b.a.a	ENSGT00950000182892.a.b.a.b.b.c ##15	ENSGT00390000004405.b.d.b.b #16	ENSGT00390000004405.b.d.b.a.a #16	ENSGT00940000154534.b.a.i #19	ENSGT00940000157439.a.d ##22	ENSGT00940000153704.B.d.a ##24	ENSGT01030000234646.B.a.a.a.a.b.f ##25	ENSGT00390000005602	ENSGT00390000006679.b.k	ENSGT01100000263525.b.a.k	ENSGT00940000156584.e.b.d.b	ENSGT00940000158833.a.a.d	ENSGT00390000017328.a.a	ENSGT00940000153653.a.a.p	ENSGT00940000154360.B.a	ENSGT00950000183145.A.b.a	ENSGT00940000165576.a.b.f.b.a	ENSGT00670000098179.e	ENSGT00940000160643.i.c	ENSGT00940000155348.B.c.c
Huchen	MODERN SPECIES	297	hoxb10a (ENSHHUG00000011647)	hoxb9a (ENSHHUG00000011642)	hoxb8a (ENSHHUG00000011631)	hoxb7a (ENSHHUG00000011624)	hoxb6a (ENSHHUG00000011606)	hoxb5a (ENSHHUG00000011602) ##7	hoxb4a (ENSHHUG00000011590) #8	hoxb3a (ENSHHUG00000011566) #9	hoxb2a (ENSHHUG00000011514) #10	hoxb1a (ENSHHUG00000011502) #12	cbx1a (ENSHHUG00000011492)	nfe2l1a (ENSHHUG00000011485) ##15	copz2 (ENSHHUG00000011449) #16	ENSHHUG00000011447	prr15la (ENSHHUG00000011422) #19	ENSHHUG00000011279 ##22	TBKBP1 (ENSHHUG00000011258) ##24	pdk2b (ENSHHUG00000011222) ##25	nags (ENSHHUG00000011200)	ENSHHUG00000011194	col1a1a (ENSHHUG00000011137)	PPP1R9B (ENSHHUG00000011053)	ENSHHUG00000011039	psmd3 (ENSHHUG00000010997)	ENSHHUG00000010984	ENSHHUG00000010977	MYLK (ENSHHUG00000010728)
Salmoninae_a	ANCESTRAL SPECIES	92	ENSGT00940000159029.d	ENSGT00940000163268.e	ENSGT00940000161386.d	ENSGT00940000161529.w.b	ENSGT00940000161230.c	ENSGT00940000161108.e.b	ENSGT00940000158354.d.f ##7	ENSGT00940000162072.a #8	ENSGT00940000159774.c.b #9	ENSGT00940000155029.c.b.d #10	ENSGT00940000166856.k #12	ENSGT00940000154152.b.a.a	ENSGT00950000182892.a.b.a.b.b.c ##15	ENSGT00390000004405.b.d.b.a.a #16	ENSGT00940000154534.b.a.i #19	ENSGT00940000157439.a.d ##22	ENSGT00940000153704.B.d.a ##24	ENSGT01030000234646.B.a.a.a.a.b.f ##25	ENSGT00390000005602	ENSGT00390000006679.b.k	ENSGT01100000263525.b.a.k	ENSGT00940000156584.e.b.d.b	ENSGT00940000158833.a.a.d	ENSGT00390000017328.a.a.k	ENSGT00940000153653.a.a.p	ENSGT00940000154360.B.a	ENSGT00950000183145.A.b.a	ENSGT00940000165576.a.b.e.b	ENSGT01050000245366.b	ENSGT00940000160643.i.c	ENSGT00940000155348.B.c.c
Salmo	ANCESTRAL SPECIES	28	ENSGT00940000167564.b	ENSGT00940000159029.d	ENSGT00940000158266.g.b	ENSGT00940000161386.d	ENSGT00940000161529.w.b	ENSGT00940000161230.c	ENSGT00940000161108.e.b	ENSGT00940000162072.a #8	ENSGT00940000159774.c.b #9	ENSGT00940000155029.c.b.d #10	ENSGT00940000166856.k #12	ENSGT00940000154152.b.a.a	ENSGT00950000182892.a.b.a.b.b.c ##15	ENSGT00390000004405.b.d.a #16	ENSGT00940000154534.b.a.i #19	ENSGT00940000157439.a.d ##22	ENSGT00940000153704.B.d.a ##24	ENSGT01030000234646.B.a.a.a.a.b.f ##25	ENSGT00390000005602	ENSGT00390000006679.b.k	ENSGT01100000263525.b.a.k	ENSGT00940000156584.e.b.d.b	ENSGT00940000158833.a.a.d	ENSGT00390000017328.a.a.k	ENSGT00940000153653.a.a.p	ENSGT00940000154360.B.a	ENSGT00950000183145.A.b.a	ENSGT00940000165576.a.b.e.b	ENSGT01050000245366.b	ENSGT00940000160643.i.c	ENSGT00940000155348.B.c.c
River trout	MODERN SPECIES		hoxb13a (ENSSTUG00000000696)	ENSSTUG00000000695	hoxb9a (ENSSTUG00000000690)	hoxb8a (ENSSTUG00000000686)	hoxb7a (ENSSTUG00000000685)	hoxb6a (ENSSTUG00000000682)	hoxb4a (ENSSTUG00000000676) #8	hoxb3a (ENSSTUG00000000672) #9	hoxb2a (ENSSTUG00000000670) #10	hoxb1a (ENSSTUG00000000668) #12	cbx1a (ENSSTUG00000000662)	nfe2l1a (ENSSTUG00000000656) ##15	copz2 (ENSSTUG00000000592) #16	ENSSTUG00000000582	prr15la (ENSSTUG00000000579) #19	ENSSTUG00000000562 ##22	TBKBP1 (ENSSTUG00000000547) ##24	pdk2b (ENSSTUG00000000275) ##25	nags (ENSSTUG00000000237)	ENSSTUG00000013948	ENSSTUG00000013943	col1a1a (ENSSTUG00000013912)	PPP1R9B (ENSSTUG00000013838)	ENSSTUG00000013831	psmd3 (ENSSTUG00000013778)	ENSSTUG00000013769	ENSSTUG00000013756	rarab (ENSSTUG00000013431)	ENSSTUG00000013411	pyya (ENSSTUG00000013396)	mpp2a (ENSSTUG00000013178)
Atlantic salmon	MODERN SPECIES	25	atp5mc1 (ENSSSAG00000005941)	eve1 (ENSSSAG00000005948)	hoxb13ab (ENSSSAG00000005954)	ENSSSAG00000005961	hoxb9ab (ENSSSAG00000004490)	hoxb8ab (ENSSSAG00000005971)	hoxb7ab (ENSSSAG00000005981)	hoxb6ab (ENSSSAG00000005990)	hoxb4ab (ENSSSAG00000005995) #8	hoxb3a (ENSSSAG00000090720) #9	hoxb1ab (ENSSSAG00000006062) #12	cbx1a (ENSSSAG00000004291)	nfe2l1a (ENSSSAG00000006129) ##15	copz2 (ENSSSAG00000004196) #16	prr15la (ENSSSAG00000109223) #19	ENSSSAG00000006340 ##22	ENSSSAG00000006408 ##24	ENSSSAG00000006444 ##25	nags (ENSSSAG00000006619)	ENSSSAG00000003876	ENSSSAG00000006663	col1a1a (ENSSSAG00000006686)	ENSSSAG00000003643	ENSSSAG00000109332	ENSSSAG00000006800	ENSSSAG00000106413	ENSSSAG00000006868	rarab (ENSSSAG00000006917)	pyya (ENSSSAG00000007244)	hsp11 (ENSSSAG00000094518)	mpp2a (ENSSSAG00000114517)
Oncorhynchus	ANCESTRAL SPECIES	64	ENSGT00940000159029.d	ENSGT00940000163268.e	ENSGT00940000161386.d	ENSGT00940000161529.w.b	ENSGT00940000161230.c	ENSGT00940000161108.e.b	ENSGT00940000158354.d.f ##7	ENSGT00940000162072.a #8	ENSGT00940000159774.c.b #9	ENSGT00940000155029.c.b.d #10	ENSGT00940000166856.k #12	ENSGT00940000154152.b.a.a	ENSGT00950000182892.a.b.a.b.b.c ##15	ENSGT00390000004405.b.d.b.a.a #16	ENSGT00940000154534.b.a.i #19	ENSGT00940000157439.a.d ##22	ENSGT01030000234646.B.a.a.a.a.b.f ##25	ENSGT00390000005602	ENSGT00390000006679.b.k	ENSGT01100000263525.b.a.k	ENSGT00940000156584.e.b.d.b	ENSGT00940000158833.a.a.d	ENSGT00390000017328.a.a.k	ENSGT00940000153653.a.a.p	ENSGT00940000154360.B.a	ENSGT00950000183145.A.b.a	ENSGT00940000165576.a.b.e.b	ENSGT01050000245366.b	ENSGT00940000160643.i.c	ENSGT00940000155348.B.c.c	ENSGT00940000163871.b
Rainbow trout	MODERN SPECIES	4	hoxb9a (ENSOMYG00000003826)	hoxb8a (ENSOMYG00000003809)	hoxb7a (ENSOMYG00000003792)	hoxb6a (ENSOMYG00000003769)	hoxb5a (ENSOMYG00000003711) ##7	hoxb4a (ENSOMYG00000003730) #8	HOXB3 (ENSOMYG00000003686) #9	hoxb2a (ENSOMYG00000003669) #10	hoxb1a (ENSOMYG00000003653) #12	cbx1a (ENSOMYG00000003629)	nfe2l1a (ENSOMYG00000003587) ##15	copz2 (ENSOMYG00000003419) #16	prr15la (ENSOMYG00000041419) #19	ENSOMYG00000077846 ##24	ENSOMYG00000041335 ##25	ENSOMYG00000041374 ##22	nags (ENSOMYG00000041323)	ENSOMYG00000041320	ENSOMYG00000048632	col1a1a (ENSOMYG00000041314)	ENSOMYG00000041182	csf-3 (ENSOMYG00000041149)	ENSOMYG00000041141	ENSOMYG00000041133	ENSOMYG00000041126	ENSOMYG00000076957	ENSOMYG00000041123	ENSOMYG00000041116	ENSOMYG00000065554	pyya (ENSOMYG00000041112)	ENSOMYG00000041095
Oncorhynchus_a	ANCESTRAL SPECIES	71	ENSGT00940000159029.d	ENSGT00940000163268.e	ENSGT00940000161386.d	ENSGT00940000161529.w.b	ENSGT00940000161230.c	ENSGT00940000161108.e.b	ENSGT00940000158354.d.f ##7	ENSGT00940000162072.a #8	ENSGT00940000159774.c.b #9	ENSGT00940000155029.c.b.d #10	ENSGT00940000166856.k #12	ENSGT00940000154152.b.a.a	ENSGT00950000182892.a.b.a.b.b.c ##15	ENSGT00390000004405.b.d.b.a.a #16	ENSGT00940000154534.b.a.i #19	ENSGT00940000157439.a.d ##22	ENSGT01030000234646.B.a.a.a.a.b.f ##25	ENSGT00390000005602	ENSGT00390000006679.b.k	ENSGT01100000263525.b.a.k	ENSGT00940000156584.e.b.d.b	ENSGT00940000158833.a.a.d	ENSGT00390000017328.a.a.k	ENSGT00940000153653.a.a.p	ENSGT00940000154360.B.a	ENSGT00950000183145.A.b.a	ENSGT00940000165576.a.b.e.b	ENSGT01050000245366.b	ENSGT00940000160643.i.c	ENSGT00940000155348.B.c.c	ENSGT00940000163871.b
Coho salmon	MODERN SPECIES	1	hoxb13a (ENSOKIG00005009014)	ENSOKIG00005009013	hoxb9a (ENSOKIG00005009004)	hoxb8a (ENSOKIG00005008994)	hoxb7a (ENSOKIG00005008982)	hoxb6a (ENSOKIG00005008972)	hoxb5a (ENSOKIG00005008959) ##7	hoxb4a (ENSOKIG00005008942) #8	hoxb3a (ENSOKIG00005008933) #9	hoxb2a (ENSOKIG00005008923) #10	hoxb1a (ENSOKIG00005008918) #12	cbx1a (ENSOKIG00005008868)	nfe2l1a (ENSOKIG00005008857) ##15	copz2 (ENSOKIG00005008689) #16	prr15la (ENSOKIG00005008658) #19	ENSOKIG00005008464 ##22	PDK2 (ENSOKIG00005008185) ##25	nags (ENSOKIG00005008137)	ENSOKIG00005008125	ENSOKIG00005008117	col1a1a (ENSOKIG00005007949)	PPP1R9B (ENSOKIG00005007824)	ENSOKIG00005007804	psmd3 (ENSOKIG00005007721)	ENSOKIG00005007707	ENSOKIG00005007652	rarab (ENSOKIG00005007304)	ENSOKIG00005007283	pyya (ENSOKIG00005007266)	mpp2a (ENSOKIG00005007226)	ENSOKIG00005007026
Chinook salmon	MODERN SPECIES	19	hoxb13a (ENSOTSG00005015615)	ENSOTSG00005015589	hoxb9a (ENSOTSG00005015587)	hoxb8a (ENSOTSG00005015581)	hoxb7a (ENSOTSG00005015578)	hoxb6a (ENSOTSG00005015571)	hoxb5a (ENSOTSG00005039828) ##7	hoxb4a (ENSOTSG00005039826) #8	hoxb3a (ENSOTSG00005039825) #9	hoxb2a (ENSOTSG00005039823) #10	hoxb1a (ENSOTSG00005039822) #12	cbx1a (ENSOTSG00005039820)	nfe2l1a (ENSOTSG00005039819) ##15	copz2 (ENSOTSG00005039812) #16	prr15la (ENSOTSG00005039810) #19	ENSOTSG00005039805 ##22	pdk2b (ENSOTSG00005038384) ##25	nags (ENSOTSG00005038371)	ENSOTSG00005038368	ENSOTSG00005038366	col1a1a (ENSOTSG00005038360)	PPP1R9B (ENSOTSG00005038348)	ENSOTSG00005038347	psmd3 (ENSOTSG00005038327)	ENSOTSG00005038324	ENSOTSG00005038323	rarab (ENSOTSG00005038295)	ENSOTSG00005038289	pyya (ENSOTSG00005038286)	mpp2a (ENSOTSG00005037858)	ENSOTSG00005037854
Northern pike	MODERN SPECIES	10	hoxb13a (ENSELUG00000001314)	ENSELUG00000014819	hoxb9a (ENSELUG00000014813)	hoxb8a (ENSELUG00000014798)	hoxb7 (ENSELUG00000014783)	hoxb6a (ENSELUG00000034343)	hoxb5a (ENSELUG00000033971) ##7	hoxb4a (ENSELUG00000034353) #8	hoxb3a (ENSELUG00000014755) #9	hoxb2a (ENSELUG00000014718) #10	hoxb1a (ENSELUG00000033826) #12	cbx1a (ENSELUG00000014706)	nfe2l1a (ENSELUG00000014683) ##15	copz2 (ENSELUG00000014620) #16	prr15la (ENSELUG00000014511) #19	ENSELUG00000014464 ##22	TBKBP1 (ENSELUG00000014401) ##24	pdk2b (ENSELUG00000014339) ##25	nags (ENSELUG00000014289)	ENSELUG00000014268	ENSELUG00000014247	col1a1a (ENSELUG00000014218)	PPP1R9B (ENSELUG00000014166)	ENSELUG00000014127	ENSELUG00000032826	psmd3 (ENSELUG00000014100)	ENSELUG00000031826	ENSELUG00000014026	ENSELUG00000013984	rarab (ENSELUG00000013907)	hspb9 (ENSELUG00000013852)
Osteoglossiformes	ANCESTRAL SPECIES	43	ENSGT00950000183025.a	ENSGT00940000159029.b	ENSGT00940000161386.a	ENSGT00940000161529	ENSGT00940000161230	ENSGT00940000161108.b	ENSGT00940000158354.c #7	ENSGT00940000162072 #8	ENSGT00940000159774.b.a #9	ENSGT00940000155029.c.b.b #10	ENSGT00940000166856 #12	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00950000182892.a.b.a.b.a #15	ENSGT00390000004405.b #16	ENSGT00940000157439.a ##22	ENSGT00750000118756.a #17	ENSGT00390000000713 #18	ENSGT00940000154534.b.a #19	ENSGT00390000011219 #20	ENSGT00390000000603 #21	ENSGT00940000157439.b #22	ENSGT00940000166447 #23	ENSGT00940000153704.B.c #24	ENSGT01030000234646.B.a.a.a.a.a #25	ENSGT00940000157411 #26	ENSGT00390000008812.b.b.a #27	ENSGT00530000063301.a.a #28	ENSGT00530000064085.c #30	ENSGT00940000157854 #31	ENSGT00950000183178.b.b.b #32
P. kingsleyae	MODERN SPECIES	389											stx1b (ENSPKIG00000014816)	ENSPKIG00000014797	ENSPKIG00000014786	ENSPKIG00000014778	ENSPKIG00000014764	ENSPKIG00000014600 ##22	cbx1a (ENSPKIG00000014496)	nr1d1 (ENSPKIG00000014394)	ENSPKIG00000014367	ENSPKIG00000014351	nsfa (ENSPKIG00000014245) ##30	BTBD17 (ENSPKIG00000014185)	MAP2K6 (ENSPKIG00000014126)	KCNJ2 (ENSPKIG00000014089)
Asian bonytongue	MODERN SPECIES	23	RAPGEFL1 (ENSSFOG00015005308)	nr1d1 (ENSSFOG00015005263)	ENSSFOG00015005236	igf2bp1 (ENSSFOG00015005197)	atp5mc1 (ENSSFOG00015005177)	ENSSFOG00015005153	hoxb13a (ENSSFOG00015005110)	hoxb9a (ENSSFOG00015005102)	hoxb8a (ENSSFOG00015005069)	hoxb6a (ENSSFOG00015005084)	hoxb5a (ENSSFOG00015005053) ##7	ENSSFOG00015004928 ##9	hoxb2a (ENSSFOG00015030727) ##10	cbx1a (ENSSFOG00015029174)	copz2 (ENSSFOG00015004826) ##16	OSBPL7 (ENSSFOG00015004752) ##22	ENSSFOG00015004737	RBFOX3 (ENSSFOG00015004716)	engase (ENSSFOG00015004631)	ENSSFOG00015027385	ENSSFOG00015029183	PRKAR1A (ENSSFOG00015004495)	zgc:86896 (ENSSFOG00015004463)	SLC16A6 (ENSSFOG00015004447)	ENSSFOG00015031359	rgs9a (ENSSFOG00015004379)	COG1 (ENSSFOG00015004261)	GRIN2C (ENSSFOG00015004179)	TMEM104 (ENSSFOG00015004109)	tsen54 (ENSSFOG00015004093)	ENSSFOG00015004081
Spotted gar	MODERN SPECIES	653	hoxb9a (ENSLOCG00000013453)	hoxb8a (ENSLOCG00000013451)	hoxb7a (ENSLOCG00000013448)	hoxb6a (ENSLOCG00000013443)	hoxb5b (ENSLOCG00000013440) #7	hoxb3a (ENSLOCG00000013436) #9	HOXB1 (ENSLOCG00000013432)	skap1 (ENSLOCG00000013427) #13	snx11 (ENSLOCG00000013423) #14	cbx1b (ENSLOCG00000013417)	NFE2L1 (ENSLOCG00000013411) #15	copz2 (ENSLOCG00000013403) #16	cdk5rap3 (ENSLOCG00000013394) #18	pnpo (ENSLOCG00000013387) #20	mrpl10 (ENSLOCG00000013385) #21	osbpl7 (ENSLOCG00000013354) #22	pdk2b (ENSLOCG00000013349) #25	TBKBP1 (ENSLOCG00000013343) #24	tbx21 (ENSLOCG00000013335) #23	itga3b (ENSLOCG00000013315)	dlx3b (ENSLOCG00000013312)	dlx4b (ENSLOCG00000013307)	ENSLOCG00000013301	kat7b (ENSLOCG00000013296)	ENSLOCG00000013294	slc25a39 (ENSLOCG00000013283)	FAM171A2 (ENSLOCG00000013275)	itga2b (ENSLOCG00000013257)	CRHR1 (ENSLOCG00000013245)	cdc27 (ENSLOCG00000013232)	KANSL1 (ENSLOCG00000013228)
Reedfish	MODERN SPECIES	5	ENSECRG00000020424	IKZF3 (ENSECRG00000020457)	ENSECRG00000020548	ENSECRG00000021253	MLLT6 (ENSECRG00000021273)	ENSECRG00000021306	ENSECRG00000021318	psmb3 (ENSECRG00000021352)	PIP4K2B (ENSECRG00000021387)	cwc25 (ENSECRG00000021449)	rpl23 (ENSECRG00000021683)	sp6 (ENSECRG00000021701)	scrn2 (ENSECRG00000021718)	ENSECRG00000021739	ENSECRG00000021760	osbpl7 (ENSECRG00000021785) #22	tbx21 (ENSECRG00000021828) #23	TBKBP1 (ENSECRG00000021849) #24	kpnb1 (ENSECRG00000021968)	npepps (ENSECRG00000022066)	ENSECRG00000022086	ENSECRG00000022093	mrpl45 (ENSECRG00000022099)	ENSECRG00000022119	socs7 (ENSECRG00000022134)	sp2 (ENSECRG00000022144)	pnpo (ENSECRG00000022161) #20	prr15la (ENSECRG00000022170) #19	CDK5RAP3 (ENSECRG00000022184) #18	ENSECRG00000022194 #18	copz2 (ENSECRG00000022208) #16
Sarcopterygii	ANCESTRAL SPECIES	94	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT01100000263518.A.a.b	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C
Tetrapoda	ANCESTRAL SPECIES	21	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589
Amniota	ANCESTRAL SPECIES	14	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Sauria	ANCESTRAL SPECIES	26	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.c.a	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.c.a	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000165444	ENSGT00550000075078	ENSGT00390000005900
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.c.a	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00960000192469	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000165444	ENSGT00550000075078	ENSGT00390000005900
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.c.a	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590.b	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00960000192469	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898.e	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776.a	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00960000189742	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000165444	ENSGT00550000075078	ENSGT00390000005900
Elapidae_a	DUPLICATION
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.c.a	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590.b	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00960000192469	ENSGT00390000000603 #21	ENSGT00940000157439.c #22	ENSGT00940000160397	ENSGT00940000153704.B.e #24	ENSGT00940000153704.B.f #24	ENSGT00550000074898.e	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776.a	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00960000189742	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000165444	ENSGT00550000075078
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.c.a	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590.b	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00960000192469	ENSGT00390000000603 #21	ENSGT00940000157439.c #22	ENSGT00940000160397	ENSGT00940000153704.B.e #24	ENSGT00940000153704.B.f #24	ENSGT00550000074898.e	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776.a	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00960000189742	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000165444	ENSGT00550000075078
Eastern brown snake	MODERN SPECIES	49	HOXB1 (ENSPTXG00000013906)	ENSPTXG00000013907	SKAP1 (ENSPTXG00000013908) #13	SNX11 (ENSPTXG00000013909) #14	ENSPTXG00000013911	NFE2L1 (ENSPTXG00000013912) ##15	COPZ2 (ENSPTXG00000013913) #16	CDK5RAP3 (ENSPTXG00000013914) #18	PRR15L (ENSPTXG00000013915) ##19	PNPO (ENSPTXG00000013916) #20	ENSPTXG00000013917	SP6 (ENSPTXG00000013918)	SCRN2 (ENSPTXG00000013919)	ENSPTXG00000013920	MRPL10 (ENSPTXG00000013921) #21	OSBPL7 (ENSPTXG00000013922) #22	TBX21 (ENSPTXG00000013928)	ENSPTXG00000013929	ENSPTXG00000013930 #24	ENSPTXG00000013931	NPEPPS (ENSPTXG00000013932)	MRPL45 (ENSPTXG00000013933)	ENSPTXG00000013934	SOCS7 (ENSPTXG00000013935)	ARHGAP23 (ENSPTXG00000013936)	SRCIN1 (ENSPTXG00000013940)	ENSPTXG00000013956	MLLT6 (ENSPTXG00000013957)	ENSPTXG00000013958	ENSPTXG00000013959	COASY (ENSPTXG00000013960)
Mainland tiger snake	MODERN SPECIES	29	HOXB2 (ENSNSUG00000007449) #10	HOXB1 (ENSNSUG00000007450)	SKAP1 (ENSNSUG00000007452) #13	SNX11 (ENSNSUG00000007454) #14	ENSNSUG00000007455	NFE2L1 (ENSNSUG00000007456) ##15	COPZ2 (ENSNSUG00000007459) #16	CDK5RAP3 (ENSNSUG00000007503) #18	PRR15L (ENSNSUG00000007504) ##19	PNPO (ENSNSUG00000007506) #20	ENSNSUG00000007509	SP6 (ENSNSUG00000007513)	SCRN2 (ENSNSUG00000007517)	ENSNSUG00000007519	MRPL10 (ENSNSUG00000007520) #21	OSBPL7 (ENSNSUG00000007592) #22	TBX21 (ENSNSUG00000007594)	TBKBP1 (ENSNSUG00000007595) #24	ENSNSUG00000007596	NPEPPS (ENSNSUG00000008148)	MRPL45 (ENSNSUG00000008681)	ENSNSUG00000008682	SOCS7 (ENSNSUG00000008683)	SRCIN1 (ENSNSUG00000008709)	ENSNSUG00000008710	MLLT6 (ENSNSUG00000008711)	ENSNSUG00000008712	ENSNSUG00000008713	COASY (ENSNSUG00000008714)	NAGLU (ENSNSUG00000008715)	KAT2A (ENSNSUG00000008716)
Blue-lipped sea krait	MODERN SPECIES	331																ENSLLTG00000000344 #22	ENSLLTG00000000313
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000157439.d #22
Blue-lipped sea krait	MODERN SPECIES	2105																ENSLLTG00000002493 #22
Indian cobra	MODERN SPECIES	337	HOXB3 (ENSNNAG00000009256) #9	HOXB2 (ENSNNAG00000009232) #10	HOXB1 (ENSNNAG00000009145)	SNX11 (ENSNNAG00000009074) #14	ENSNNAG00000009045	NFE2L1 (ENSNNAG00000009022) ##15	COPZ2 (ENSNNAG00000008924) #16	CDK5RAP3 (ENSNNAG00000008878) #18	PRR15L (ENSNNAG00000008859) ##19	PNPO (ENSNNAG00000008837) #20	ENSNNAG00000008826	SP6 (ENSNNAG00000008820)	SCRN2 (ENSNNAG00000008774)	ENSNNAG00000008753	MRPL10 (ENSNNAG00000008730) #21	OSBPL7 (ENSNNAG00000008187) #22	TBX21 (ENSNNAG00000008104)	TBKBP1 (ENSNNAG00000008059) #24	ENSNNAG00000007982	NPEPPS (ENSNNAG00000007364)	MRPL45 (ENSNNAG00000007294)	ENSNNAG00000007277	SOCS7 (ENSNNAG00000007201)	ARHGAP23 (ENSNNAG00000007152)	ENSNNAG00000007142	SRCIN1 (ENSNNAG00000007080)	ENSNNAG00000007071	MLLT6 (ENSNNAG00000007004)	ENSNNAG00000006987	ENSNNAG00000006974	COASY (ENSNNAG00000006934)
Lizard	MODERN SPECIES	5	ENSACAG00000041448	ENSACAG00000034966	SKAP1 (ENSACAG00000006534) #13	SNX11 (ENSACAG00000006556) #14	ENSACAG00000006594	NFE2L1 (ENSACAG00000006615) ##15	COPZ2 (ENSACAG00000006651) #16	CDK5RAP3 (ENSACAG00000006686) #18	PRR15L (ENSACAG00000006762) ##19	PNPO (ENSACAG00000006764) #20	SP2 (ENSACAG00000006793)	SP6 (ENSACAG00000006831)	SCRN2 (ENSACAG00000006837)	LRRC46 (ENSACAG00000006887)	MRPL10 (ENSACAG00000006889) #21	OSBPL7 (ENSACAG00000006906) #22	TBX21 (ENSACAG00000007044)	TBKBP1 (ENSACAG00000007079) #24	KPNB1 (ENSACAG00000007097)	NPEPPS (ENSACAG00000007242)	MRPL45 (ENSACAG00000007343)	GPR179 (ENSACAG00000043732)	SOCS7 (ENSACAG00000032737)	ARHGAP23 (ENSACAG00000007448)	SRCIN1 (ENSACAG00000007498)	ENSACAG00000017973	MLLT6 (ENSACAG00000017970)	ENSACAG00000037458	ENSACAG00000017968	ENSACAG00000017967	NAGLU (ENSACAG00000042694)
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.c.a	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000165444	ENSGT00550000075078	ENSGT00390000005900
Common wall lizard	MODERN SPECIES	4	HOXB2 (ENSPMRG00000013183) #10	HOXB1 (ENSPMRG00000013189)	ENSPMRG00000013192	CBX1 (ENSPMRG00000013202)	SNX11 (ENSPMRG00000013221) #14	NFE2L1 (ENSPMRG00000013246) ##15	ENSPMRG00000013258	COPZ2 (ENSPMRG00000013275) #16	CDK5RAP3 (ENSPMRG00000013294) #18	PNPO (ENSPMRG00000013310) #20	ENSPMRG00000013316	SP2 (ENSPMRG00000013320)	SP6 (ENSPMRG00000013329)	SCRN2 (ENSPMRG00000013336)	LRRC46 (ENSPMRG00000013345)	OSBPL7 (ENSPMRG00000013357) #22	TBX21 (ENSPMRG00000013375)	TBKBP1 (ENSPMRG00000013381) #24	KPNB1 (ENSPMRG00000013395)	NPEPPS (ENSPMRG00000013437)	MRPL45 (ENSPMRG00000013492)	GPR179 (ENSPMRG00000013502)	SOCS7 (ENSPMRG00000015866)	ARHGAP23 (ENSPMRG00000015886)	SRCIN1 (ENSPMRG00000015906)	ENSPMRG00000015937	ENSPMRG00000015948	MLLT6 (ENSPMRG00000015968)	ENSPMRG00000016007	ENSPMRG00000016014	COASY (ENSPMRG00000016020)
Argentine black and white tegu	MODERN SPECIES	32	HOXB1 (ENSSMRG00000021845)	SKAP1 (ENSSMRG00000021847) #13	SNX11 (ENSSMRG00000021848) #14	CBX1 (ENSSMRG00000021849)	NFE2L1 (ENSSMRG00000021850) ##15	COPZ2 (ENSSMRG00000021851) #16	CDK5RAP3 (ENSSMRG00000021852) #18	PRR15L (ENSSMRG00000021853) ##19	PNPO (ENSSMRG00000021854) #20	ENSSMRG00000021855	SP2 (ENSSMRG00000021856)	SP6 (ENSSMRG00000021857)	SCRN2 (ENSSMRG00000021858)	LRRC46 (ENSSMRG00000000025)	MRPL10 (ENSSMRG00000000096) #21	OSBPL7 (ENSSMRG00000000139) #22	TBX21 (ENSSMRG00000000195)	TBKBP1 (ENSSMRG00000000217) #24	KPNB1 (ENSSMRG00000000247)	NPEPPS (ENSSMRG00000000307)	MRPL45 (ENSSMRG00000000340)	GPR179 (ENSSMRG00000000359)	SOCS7 (ENSSMRG00000000374)	ENSSMRG00000000409	ARHGAP23 (ENSSMRG00000000448)	SRCIN1 (ENSSMRG00000000664)	ENSSMRG00000002315	MLLT6 (ENSSMRG00000002340)	ENSSMRG00000002362	COASY (ENSSMRG00000002364)	NAGLU (ENSSMRG00000002370)
tuatara	MODERN SPECIES	1705		ENSSPUG00000017491	SKAP1 (ENSSPUG00000017498) #13	SNX11 (ENSSPUG00000017511) #14	CBX1 (ENSSPUG00000017523)	NFE2L1 (ENSSPUG00000017549) ##15	COPZ2 (ENSSPUG00000017576) #16	CDK5RAP3 (ENSSPUG00000017587) #18	PRR15L (ENSSPUG00000017603) ##19	ENSSPUG00000017635	SP2 (ENSSPUG00000017648)	SP6 (ENSSPUG00000017659)	SCRN2 (ENSSPUG00000017669)	LRRC46 (ENSSPUG00000017689)	MRPL10 (ENSSPUG00000017695) #21	OSBPL7 (ENSSPUG00000017709) #22	TBX21 (ENSSPUG00000017746)	TBKBP1 (ENSSPUG00000017792) #24	KPNB1 (ENSSPUG00000017799)	NPEPPS (ENSSPUG00000017816)	MRPL45 (ENSSPUG00000017848)	ENSSPUG00000017870	SOCS7 (ENSSPUG00000017876)	ARHGAP23 (ENSSPUG00000017887)	ENSSPUG00000017899	SRCIN1 (ENSSPUG00000017913)	MLLT6 (ENSSPUG00000017943)	ENSSPUG00000017972	PCGF2 (ENSSPUG00000017985)	PSMB3 (ENSSPUG00000017990)	PIP4K2B (ENSSPUG00000018016)
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Emydidae	ANCESTRAL SPECIES	26	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	91	SKAP1 (ENSTMTG00000007393) #13	SNX11 (ENSTMTG00000007347) #14	CBX1 (ENSTMTG00000007333)	NFE2L1 (ENSTMTG00000007320) ##15	COPZ2 (ENSTMTG00000007271) #16	CDK5RAP3 (ENSTMTG00000007229) #18	PRR15L (ENSTMTG00000007217) ##19	PNPO (ENSTMTG00000007206) #20	ENSTMTG00000007188	SP2 (ENSTMTG00000007171)	ENSTMTG00000007161	SCRN2 (ENSTMTG00000007144)	ENSTMTG00000007129	MRPL10 (ENSTMTG00000007114) #21	ENSTMTG00000007063 #22	ENSTMTG00000007028 #22	TBX21 (ENSTMTG00000007000)	TBKBP1 (ENSTMTG00000006974) #24	KPNB1 (ENSTMTG00000006930)	NPEPPS (ENSTMTG00000006865)	MRPL45 (ENSTMTG00000006838)	ENSTMTG00000006740	SOCS7 (ENSTMTG00000006649)	ARHGAP23 (ENSTMTG00000006551)	SRCIN1 (ENSTMTG00000006192)	ENSTMTG00000006135	MLLT6 (ENSTMTG00000006085)	ENSTMTG00000006065	PCGF2 (ENSTMTG00000006028)	PSMB3 (ENSTMTG00000006014)	PIP4K2B (ENSTMTG00000006001)
Three-toed box turtle	MODERN SPECIES	91	HOXB1 (ENSTMTG00000007622)	SKAP1 (ENSTMTG00000007393) #13	SNX11 (ENSTMTG00000007347) #14	CBX1 (ENSTMTG00000007333)	NFE2L1 (ENSTMTG00000007320) ##15	COPZ2 (ENSTMTG00000007271) #16	CDK5RAP3 (ENSTMTG00000007229) #18	PRR15L (ENSTMTG00000007217) ##19	PNPO (ENSTMTG00000007206) #20	ENSTMTG00000007188	SP2 (ENSTMTG00000007171)	ENSTMTG00000007161	SCRN2 (ENSTMTG00000007144)	ENSTMTG00000007129	MRPL10 (ENSTMTG00000007114) #21	ENSTMTG00000007063 #22	ENSTMTG00000007028 #22	TBX21 (ENSTMTG00000007000)	TBKBP1 (ENSTMTG00000006974) #24	KPNB1 (ENSTMTG00000006930)	NPEPPS (ENSTMTG00000006865)	MRPL45 (ENSTMTG00000006838)	ENSTMTG00000006740	SOCS7 (ENSTMTG00000006649)	ARHGAP23 (ENSTMTG00000006551)	SRCIN1 (ENSTMTG00000006192)	ENSTMTG00000006135	MLLT6 (ENSTMTG00000006085)	ENSTMTG00000006065	PCGF2 (ENSTMTG00000006028)	PSMB3 (ENSTMTG00000006014)
painted turtle	MODERN SPECIES	2394	HOXB1 (ENSCPBG00000027354)	SKAP1 (ENSCPBG00000027357) #13	SNX11 (ENSCPBG00000027362) #14	CBX1 (ENSCPBG00000027366)	NFE2L1 (ENSCPBG00000027369) ##15	COPZ2 (ENSCPBG00000027373) #16	CDK5RAP3 (ENSCPBG00000027376) #18	PRR15L (ENSCPBG00000027380) ##19	PNPO (ENSCPBG00000027382) #20	ENSCPBG00000027388	SP2 (ENSCPBG00000027391)	SP6 (ENSCPBG00000027395)	SCRN2 (ENSCPBG00000027397)	LRRC46 (ENSCPBG00000027399)	MRPL10 (ENSCPBG00000027401) #21	OSBPL7 (ENSCPBG00000027405) #22	TBX21 (ENSCPBG00000027414)	ENSCPBG00000027421 #24	KPNB1 (ENSCPBG00000027423)	NPEPPS (ENSCPBG00000027428)	MRPL45 (ENSCPBG00000027431)	ENSCPBG00000027434	ARHGAP23 (ENSCPBG00000027456)	SRCIN1 (ENSCPBG00000027469)	ENSCPBG00000027476	MLLT6 (ENSCPBG00000027478)	ENSCPBG00000027483	PCGF2 (ENSCPBG00000027485)	PSMB3 (ENSCPBG00000027486)	PIP4K2B (ENSCPBG00000027488)	CWC25 (ENSCPBG00000027490)
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	15	HOXB1 (ENSGEVG00005017735)	SKAP1 (ENSGEVG00005017712) #13	SNX11 (ENSGEVG00005017693) #14	CBX1 (ENSGEVG00005017682)	NFE2L1 (ENSGEVG00005017658) ##15	COPZ2 (ENSGEVG00005017626) #16	CDK5RAP3 (ENSGEVG00005017600) #18	PRR15L (ENSGEVG00005017586) ##19	PNPO (ENSGEVG00005017569) #20	ENSGEVG00005017553	SP2 (ENSGEVG00005017526)	SCRN2 (ENSGEVG00005017480)	LRRC46 (ENSGEVG00005017463)	MRPL10 (ENSGEVG00005017446) #21	ENSGEVG00005017409 #22	ENSGEVG00005017280 #22	TBX21 (ENSGEVG00005017193)	TBKBP1 (ENSGEVG00005017137) #24	KPNB1 (ENSGEVG00005017083)	NPEPPS (ENSGEVG00005017041)	MRPL45 (ENSGEVG00005017007)	ENSGEVG00005016842	SOCS7 (ENSGEVG00005016708)	ENSGEVG00005016677	ARHGAP23 (ENSGEVG00005016604)	SRCIN1 (ENSGEVG00005016485)	ENSGEVG00005016437	MLLT6 (ENSGEVG00005016337)	ENSGEVG00005016233	PCGF2 (ENSGEVG00005016206)	PSMB3 (ENSGEVG00005016163)
Goode s thornscrub tortoise	MODERN SPECIES	15	HOXB2 (ENSGEVG00005017753) #10	HOXB1 (ENSGEVG00005017735)	SKAP1 (ENSGEVG00005017712) #13	SNX11 (ENSGEVG00005017693) #14	CBX1 (ENSGEVG00005017682)	NFE2L1 (ENSGEVG00005017658) ##15	COPZ2 (ENSGEVG00005017626) #16	CDK5RAP3 (ENSGEVG00005017600) #18	PRR15L (ENSGEVG00005017586) ##19	PNPO (ENSGEVG00005017569) #20	ENSGEVG00005017553	SP2 (ENSGEVG00005017526)	SCRN2 (ENSGEVG00005017480)	LRRC46 (ENSGEVG00005017463)	MRPL10 (ENSGEVG00005017446) #21	ENSGEVG00005017409 #22	ENSGEVG00005017280 #22	TBX21 (ENSGEVG00005017193)	TBKBP1 (ENSGEVG00005017137) #24	KPNB1 (ENSGEVG00005017083)	NPEPPS (ENSGEVG00005017041)	MRPL45 (ENSGEVG00005017007)	ENSGEVG00005016842	SOCS7 (ENSGEVG00005016708)	ENSGEVG00005016677	ARHGAP23 (ENSGEVG00005016604)	SRCIN1 (ENSGEVG00005016485)	ENSGEVG00005016437	MLLT6 (ENSGEVG00005016337)	ENSGEVG00005016233	PCGF2 (ENSGEVG00005016206)
Abingdon island giant tortoise	MODERN SPECIES	1609	HOXB1 (ENSCABG00000002728)	SKAP1 (ENSCABG00000002721) #13	SNX11 (ENSCABG00000002717) #14	CBX1 (ENSCABG00000002713)	NFE2L1 (ENSCABG00000002708) ##15	COPZ2 (ENSCABG00000002681) #16	CDK5RAP3 (ENSCABG00000002680) #18	PRR15L (ENSCABG00000002679) ##19	PNPO (ENSCABG00000002678) #20	ENSCABG00000002677	SP2 (ENSCABG00000002675)	SP6 (ENSCABG00000002674)	SCRN2 (ENSCABG00000002671)	ENSCABG00000002668	MRPL10 (ENSCABG00000002666) #21	OSBPL7 (ENSCABG00000002659) #22	TBX21 (ENSCABG00000002657)	TBKBP1 (ENSCABG00000002655) #24	KPNB1 (ENSCABG00000002648)	NPEPPS (ENSCABG00000002641)	MRPL45 (ENSCABG00000002638)	ENSCABG00000002635	SOCS7 (ENSCABG00000002631)	ARHGAP23 (ENSCABG00000002627)	SRCIN1 (ENSCABG00000002622)	ENSCABG00000002620	MLLT6 (ENSCABG00000002618)	ENSCABG00000002615	PCGF2 (ENSCABG00000002613)	PSMB3 (ENSCABG00000002612)	PIP4K2B (ENSCABG00000000585)
Archosauria	ANCESTRAL SPECIES	20	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Aves	ANCESTRAL SPECIES	26	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Galloanserae	DUPLICATION
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439.i #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Anatidae	ANCESTRAL SPECIES	70	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439.i #22
Pink-footed goose	MODERN SPECIES	305	HOXB3 (ENSABRG00000000506) #9	HOXB2 (ENSABRG00000000517) #10	HOXB1 (ENSABRG00000000522)	SKAP1 (ENSABRG00000000558) #13	SNX11 (ENSABRG00000000576) #14	CBX1 (ENSABRG00000000584)	NFE2L1 (ENSABRG00000000594) ##15	ENSABRG00000000606 #16	CDK5RAP3 (ENSABRG00000000636) #18	PNPO (ENSABRG00000000676) #20	SP2 (ENSABRG00000001034)	SP6 (ENSABRG00000001100)	SCRN2 (ENSABRG00000001107)	LRRC46 (ENSABRG00000001138)	MRPL10 (ENSABRG00000001154) #21	ENSABRG00000001168 #22
Duck	MODERN SPECIES	4004																ENSAPLG00000017152 #22
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439.i #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439.i #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246.c.a	ENSGT00940000155246.c.b	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157961.C	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874	ENSGT00440000039055.v
Chicken	MODERN SPECIES	19	HOXB3 (ENSGALG00010023428) #9	HOXB2 (ENSGALG00010023438) #10	HOXB1 (ENSGALG00010023454)	SKAP1 (ENSGALG00010021479) #13	SNX11 (ENSGALG00010021554) #14	CBX1 (ENSGALG00010021565)	NFE2L1 (ENSGALG00010021583) ##15	CDK5RAP3 (ENSGALG00010023706) #18	PRR15L (ENSGALG00010023722) ##19	PNPO (ENSGALG00010023726) #20	SP2 (ENSGALG00010023730)	SP6 (ENSGALG00010023742)	SCRN2 (ENSGALG00010023770)	LRRC46 (ENSGALG00010023784)	MRPL10 (ENSGALG00010023807) #21	OSBPL7 (ENSGALG00010023841) #22	TBX21 (ENSGALG00010023883)	TBKBP1 (ENSGALG00010023903) #24	KPNB1 (ENSGALG00010023927)	ENSGALG00010024010	ENSGALG00010021150	MRPL45 (ENSGALG00010024039)	ENSGALG00010024047	SOCS7 (ENSGALG00010024122)	SRCIN1 (ENSGALG00010024162)	MLLT6 (ENSGALG00010022085)	CISD3 (ENSGALG00010022101)	PCGF2 (ENSGALG00010022111)	PSMB3 (ENSGALG00010022122)	PIP4K2B (ENSGALG00010022151)	CWC25 (ENSGALG00010022158)
Turkey	MODERN SPECIES	951									CDK5RAP3 (ENSMGAG00000002616) #18	PRR15L (ENSMGAG00000016209) ##19	PNPO (ENSMGAG00000002670) #20	SP2 (ENSMGAG00000008043)	SCRN2 (ENSMGAG00000008023)	LRRC46 (ENSMGAG00000018266)	MRPL10 (ENSMGAG00000022761) #21	OSBPL7 (ENSMGAG00000002368) #22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000157439.j #22
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000157439.j #22
Duck	MODERN SPECIES	1007																ENSAPLG00000026088 #22
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Kakapo	MODERN SPECIES	12	ENSSHBG00005010082	DLX3 (ENSSHBG00005010048)	ENSSHBG00005010020	ENSSHBG00005009990	ENSSHBG00005009969	ENSSHBG00005009950 #14	ENSSHBG00005009936 ##15	CDK5RAP3 (ENSSHBG00005009863) #18	PRR15L (ENSSHBG00005009820) ##19	PNPO (ENSSHBG00005009805) #20	SP2 (ENSSHBG00005009786)	SP6 (ENSSHBG00005009774)	SCRN2 (ENSSHBG00005009758)	ENSSHBG00005009744	MRPL10 (ENSSHBG00005009737) #21	OSBPL7 (ENSSHBG00005009643) #22	TBX21 (ENSSHBG00005009578)	ENSSHBG00005009566 #24	ENSSHBG00005009552 #24	KPNB1 (ENSSHBG00005009532)	NPEPPS (ENSSHBG00005009482)	MRPL45 (ENSSHBG00005009448)	GPR179 (ENSSHBG00005009413)	SOCS7 (ENSSHBG00005009381)	ARHGAP23 (ENSSHBG00005009300)	SRCIN1 (ENSSHBG00005009216)	ENSSHBG00005009171	MLLT6 (ENSSHBG00005009120)	ENSSHBG00005009099	PCGF2 (ENSSHBG00005009086)	PSMB3 (ENSSHBG00005009067)
Golden eagle	MODERN SPECIES	24	HOXB1 (ENSACCG00020005760)	ENSACCG00020005744	SKAP1 (ENSACCG00020005684) #13	SNX11 (ENSACCG00020005654) #14	CBX1 (ENSACCG00020005635)	NFE2L1 (ENSACCG00020005624) ##15	ENSACCG00020005600	CDK5RAP3 (ENSACCG00020005558) #18	PRR15L (ENSACCG00020005531) ##19	PNPO (ENSACCG00020005520) #20	ENSACCG00020005504	SP2 (ENSACCG00020005484)	SCRN2 (ENSACCG00020005452)	LRRC46 (ENSACCG00020005432)	MRPL10 (ENSACCG00020005421) #21	OSBPL7 (ENSACCG00020005401) #22	TBX21 (ENSACCG00020005386)	TBKBP1 (ENSACCG00020005362) #24	KPNB1 (ENSACCG00020005348)	NPEPPS (ENSACCG00020005314)	MRPL45 (ENSACCG00020005292)	GPR179 (ENSACCG00020005244)	SOCS7 (ENSACCG00020005201)	ARHGAP23 (ENSACCG00020005177)	SRCIN1 (ENSACCG00020005053)	ENSACCG00020004918	MLLT6 (ENSACCG00020004903)	ENSACCG00020004890	PCGF2 (ENSACCG00020004879)	PSMB3 (ENSACCG00020004866)	PIP4K2B (ENSACCG00020004858)
Passeriformes	ANCESTRAL SPECIES	29	ENSGT00940000158988.a.b	ENSGT00940000159774 #9	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00940000172406	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874	ENSGT00440000039055
Great tit	DUPLICATION
Great tit	MODERN SPECIES	304											SP2 (ENSPMJG00000005848)	SP6 (ENSPMJG00000005847)	SCRN2 (ENSPMJG00000005843)	ENSPMJG00000005834	ENSPMJG00000005831	ENSPMJG00000005821 #22	ENSPMJG00000005817 #22	ENSPMJG00000005815 #23	TBKBP1 (ENSPMJG00000005810) #24
Great tit	MODERN SPECIES	304										SP2 (ENSPMJG00000005848)	SP6 (ENSPMJG00000005847)	SCRN2 (ENSPMJG00000005843)	ENSPMJG00000005834	ENSPMJG00000005831	ENSPMJG00000005821 #22	ENSPMJG00000005817 #22	ENSPMJG00000005815 #23	TBKBP1 (ENSPMJG00000005810) #24
Passeriformes_d	ANCESTRAL SPECIES	25	ENSGT00940000158354 #7	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00940000172406	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b.c	ENSGT00940000157961.C	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874	ENSGT00440000039055
Passeriformes_g	ANCESTRAL SPECIES	50	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000172406	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b.c	ENSGT00940000157961.C	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874	ENSGT00440000039055
Passeroidea	ANCESTRAL SPECIES	49	ENSGT00940000161108	ENSGT00940000158354 #7	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000172406	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b.d	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00940000165589	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	20	ENSTGUG00000020107	HOXB6 (ENSTGUG00000003435)	HOXB5 (ENSTGUG00000003430) #7	ENSTGUG00000021689	HOXB2 (ENSTGUG00000022054) #10	HOXB1 (ENSTGUG00000025694)	SKAP1 (ENSTGUG00000029482) #13	ENSTGUG00000026594 #14	NFE2L1 (ENSTGUG00000014715) ##15	CDK5RAP3 (ENSTGUG00000016909) #18	PNPO (ENSTGUG00000027633) #20	SP2 (ENSTGUG00000024446)	SP6 (ENSTGUG00000027194)	SCRN2 (ENSTGUG00000021900)	ENSTGUG00000029748	ENSTGUG00000028791 #22	ENSTGUG00000021758 #22	ENSTGUG00000021058	TBKBP1 (ENSTGUG00000026971) #24	KPNB1 (ENSTGUG00000003387)	NPEPPS (ENSTGUG00000003339)	MRPL45 (ENSTGUG00000003330)	GPR179 (ENSTGUG00000020188)	SOCS7 (ENSTGUG00000003337)	ENSTGUG00000028017	ARHGAP23 (ENSTGUG00000023504)	SRCIN1 (ENSTGUG00000017145)	ENSTGUG00000022944	ENSTGUG00000023644	MLLT6 (ENSTGUG00000022785)	ENSTGUG00000022382
Zebra finch	MODERN SPECIES	20	HOXB6 (ENSTGUG00000003435)	HOXB5 (ENSTGUG00000003430) #7	ENSTGUG00000021689	HOXB2 (ENSTGUG00000022054) #10	HOXB1 (ENSTGUG00000025694)	SKAP1 (ENSTGUG00000029482) #13	ENSTGUG00000026594 #14	NFE2L1 (ENSTGUG00000014715) ##15	CDK5RAP3 (ENSTGUG00000016909) #18	PNPO (ENSTGUG00000027633) #20	SP2 (ENSTGUG00000024446)	SP6 (ENSTGUG00000027194)	SCRN2 (ENSTGUG00000021900)	ENSTGUG00000029748	ENSTGUG00000028791 #22	ENSTGUG00000021758 #22	ENSTGUG00000021058	TBKBP1 (ENSTGUG00000026971) #24	KPNB1 (ENSTGUG00000003387)	NPEPPS (ENSTGUG00000003339)	MRPL45 (ENSTGUG00000003330)	GPR179 (ENSTGUG00000020188)	SOCS7 (ENSTGUG00000003337)	ENSTGUG00000028017	ARHGAP23 (ENSTGUG00000023504)	SRCIN1 (ENSTGUG00000017145)	ENSTGUG00000022944	ENSTGUG00000023644	MLLT6 (ENSTGUG00000022785)	ENSTGUG00000022382	PCGF2 (ENSTGUG00000025864)
Common canary	MODERN SPECIES	594																ENSSCAG00000001809 #22
African ostrich	MODERN SPECIES	146													ENSSCUG00000002441	ENSSCUG00000002443	MRPL10 (ENSSCUG00000002444) #21	ENSSCUG00000002447 #22
Australian saltwater crocodile	MODERN SPECIES	60	HOXB1 (ENSCPRG00005007211)	SKAP1 (ENSCPRG00005007201) #13	SNX11 (ENSCPRG00005007185) #14	CBX1 (ENSCPRG00005007181)	NFE2L1 (ENSCPRG00005007178) ##15	COPZ2 (ENSCPRG00005007172) #16	CDK5RAP3 (ENSCPRG00005007163) #18	PRR15L (ENSCPRG00005007160) ##19	PNPO (ENSCPRG00005007155) #20	ENSCPRG00005007151	SP2 (ENSCPRG00005007150)	SP6 (ENSCPRG00005007147)	SCRN2 (ENSCPRG00005007138)	LRRC46 (ENSCPRG00005007132)	MRPL10 (ENSCPRG00005007129) #21	OSBPL7 (ENSCPRG00005007117) #22	TBX21 (ENSCPRG00005007057)	TBKBP1 (ENSCPRG00005007027) #24	KPNB1 (ENSCPRG00005006998)
Mammalia	ANCESTRAL SPECIES	12	ENSGT00940000172404	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Theria	ANCESTRAL SPECIES	9	ENSGT00940000172404	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574	ENSGT00940000159730
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574	ENSGT00940000159730
Primates	ANCESTRAL SPECIES	3	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574	ENSGT00940000159730
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574	ENSGT00940000159730
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574	ENSGT00940000159730
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574	ENSGT00940000159730
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713.h.b #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246.i	ENSGT00940000155246.j.b.b	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574
Hominidae	ANCESTRAL SPECIES	16	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713.h.a #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246.i	ENSGT00940000155246.j.b.b	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713.h.a.a.b #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246.j.b.a	ENSGT00390000004027	ENSGT01090000259987.b.b.a.a.b	ENSGT01030000234570.d.b.a.b.a	ENSGT00950000182950.C.a.a	ENSGT00940000155111.h	ENSGT00530000063282.t.h.a.b.d	ENSGT00390000010523.c.a	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000157854 #31	ENSGT00530000064085 #30
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713.h.a.a.b #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246.j.b.a	ENSGT00390000004027	ENSGT01090000259987.b.b.a.a.b	ENSGT01030000234570.d.b.a.b.a	ENSGT00950000182950.C.a.b.a	ENSGT00950000182950.C.a.a	ENSGT00530000063282.t.h.a.b.d	ENSGT00390000010523.c.a	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000157854 #31	ENSGT00530000064085 #30
Pan	ANCESTRAL SPECIES	3	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713.h.a.a.b #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246.j.b.a	ENSGT00940000153464.A.b.b	ENSGT00390000004027	ENSGT01090000259987.b.b.a.a.b	ENSGT01030000234570.d.b.a.b.a	ENSGT00950000182950.C.a.a	ENSGT00530000063282.t.h.a.b.d	ENSGT00390000010523.c.a	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000157854 #31	ENSGT00390000014122.i.b.a.a.a.a.c.a
Bonobo	MODERN SPECIES	8	HOXB2 (ENSPPAG00000027417) #10	HOXB1 (ENSPPAG00000039129)	SKAP1 (ENSPPAG00000039277) #13	SNX11 (ENSPPAG00000033185) #14	ENSPPAG00000030413	NFE2L1 (ENSPPAG00000031737) ##15	COPZ2 (ENSPPAG00000043351) #16	ENSPPAG00000029145 #18	PRR15L (ENSPPAG00000003316) ##19	PNPO (ENSPPAG00000038148) #20	SP2 (ENSPPAG00000027065)	SP6 (ENSPPAG00000026169)	SCRN2 (ENSPPAG00000028214)	LRRC46 (ENSPPAG00000038983)	MRPL10 (ENSPPAG00000034452) #21	OSBPL7 (ENSPPAG00000027887) #22	TBX21 (ENSPPAG00000033988)	ENSPPAG00000040088 #24	KPNB1 (ENSPPAG00000028842)	ENSPPAG00000041383	ENSPPAG00000031240	ENSPPAG00000041328	ENSPPAG00000019537	ITGB3 (ENSPPAG00000030328)	MYL4 (ENSPPAG00000032176)	CDC27 (ENSPPAG00000035989)	RPRML (ENSPPAG00000021337)	ENSPPAG00000004563	ENSPPAG00000033174	WNT3 (ENSPPAG00000037563) #31	NSF (ENSPPAG00000030856) #30
Chimpanzee	MODERN SPECIES	8	HOXB2 (ENSPTRG00000009352) #10	HOXB1 (ENSPTRG00000009351)	SKAP1 (ENSPTRG00000009350) #13	SNX11 (ENSPTRG00000009349) #14	CBX1 (ENSPTRG00000052115)	NFE2L1 (ENSPTRG00000022631) ##15	COPZ2 (ENSPTRG00000009346) #16	CDK5RAP3 (ENSPTRG00000009345) #18	PRR15L (ENSPTRG00000047216) ##19	PNPO (ENSPTRG00000009343) #20	SP2 (ENSPTRG00000009342)	SP6 (ENSPTRG00000009340)	SCRN2 (ENSPTRG00000009339)	LRRC46 (ENSPTRG00000009338)	MRPL10 (ENSPTRG00000009337) #21	OSBPL7 (ENSPTRG00000009336) #22	TBX21 (ENSPTRG00000009335)	TBKBP1 (ENSPTRG00000009334) #24	KPNB1 (ENSPTRG00000009333)	NPEPPS (ENSPTRG00000009330)	ENSPTRG00000048037	ENSPTRG00000045761	EFCAB13 (ENSPTRG00000009329)	MYL4 (ENSPTRG00000024314)	CDC27 (ENSPTRG00000009326)	ENSPTRG00000051416	ENSPTRG00000052446	ENSPTRG00000009323	ENSPTRG00000009322	WNT3 (ENSPTRG00000009321) #31	NSF (ENSPTRG00000009320) #30
Human	MODERN SPECIES	8	HOXB2 (ENSG00000173917) #10	HOXB1 (ENSG00000120094)	SKAP1 (ENSG00000141293) #13	SNX11 (ENSG00000002919) #14	CBX1 (ENSG00000108468)	NFE2L1 (ENSG00000082641) ##15	COPZ2 (ENSG00000005243) #16	CDK5RAP3 (ENSG00000108465) #18	PRR15L (ENSG00000167183) ##19	PNPO (ENSG00000108439) #20	SP2 (ENSG00000167182)	SP6 (ENSG00000189120)	SCRN2 (ENSG00000141295)	LRRC46 (ENSG00000141294)	MRPL10 (ENSG00000159111) #21	OSBPL7 (ENSG00000006025) #22	TBX21 (ENSG00000073861)	TBKBP1 (ENSG00000198933) #24	KPNB1 (ENSG00000108424)	NPEPPS (ENSG00000141279)	EFCAB13 (ENSG00000178852)	ITGB3 (ENSG00000259207)	MYL4 (ENSG00000198336)	CDC27 (ENSG00000004897)	RPRML (ENSG00000179673)	GOSR2 (ENSG00000108433)	WNT9B (ENSG00000158955)	WNT3 (ENSG00000108379) #31	NSF (ENSG00000073969) #30	LRRC37A2 (ENSG00000238083)	ARL17A (ENSG00000185829)
Gorilla	MODERN SPECIES	18	HOXB2 (ENSGGOG00000009910) #10	HOXB1 (ENSGGOG00000009904)	SKAP1 (ENSGGOG00000012624) #13	ENSGGOG00000025896	CBX1 (ENSGGOG00000024063)	NFE2L1 (ENSGGOG00000002268) ##15	COPZ2 (ENSGGOG00000002264) #16	ENSGGOG00000022994 #18	PRR15L (ENSGGOG00000037816) ##19	PNPO (ENSGGOG00000003786) #20	SP2 (ENSGGOG00000005330)	SP6 (ENSGGOG00000036261)	SCRN2 (ENSGGOG00000004547)	LRRC46 (ENSGGOG00000012667)	MRPL10 (ENSGGOG00000015353) #21	OSBPL7 (ENSGGOG00000015344) #22	TBX21 (ENSGGOG00000002208)	TBKBP1 (ENSGGOG00000002206) #24	KPNB1 (ENSGGOG00000008089)	ENSGGOG00000022991	EFCAB13 (ENSGGOG00000022715)	ENSGGOG00000023488	ITGB3 (ENSGGOG00000007757)	MYL4 (ENSGGOG00000009722)	CDC27 (ENSGGOG00000014729)	ENSGGOG00000040439	RPRML (ENSGGOG00000000099)	ENSGGOG00000001255	WNT9B (ENSGGOG00000017083)	WNT3 (ENSGGOG00000007186) #31	ENSGGOG00000040255 #30
Orangutan	MODERN SPECIES	8	HOXB2 (ENSPPYG00000008895) #10	HOXB1 (ENSPPYG00000008894)	SKAP1 (ENSPPYG00000008893) #13	SNX11 (ENSPPYG00000008892) #14	ENSPPYG00000008891	NFE2L1 (ENSPPYG00000036998) ##15	ENSPPYG00000008889 #16	CDK5RAP3 (ENSPPYG00000008888) #18	PRR15L (ENSPPYG00000008887) ##19	PNPO (ENSPPYG00000040967) #20	SP2 (ENSPPYG00000008885)	SP6 (ENSPPYG00000008884)	SCRN2 (ENSPPYG00000008883)	LRRC46 (ENSPPYG00000032761)	MRPL10 (ENSPPYG00000008881) #21	OSBPL7 (ENSPPYG00000008880) #22	TBX21 (ENSPPYG00000008879)	TBKBP1 (ENSPPYG00000008878) #24	KPNB1 (ENSPPYG00000025935)	NPEPPS (ENSPPYG00000008877)	MRPL45 (ENSPPYG00000008876)	GPR179 (ENSPPYG00000008874)	ENSPPYG00000039847	SOCS7 (ENSPPYG00000008873)	ARHGAP23 (ENSPPYG00000008872)	SRCIN1 (ENSPPYG00000008871)	ENSPPYG00000032356	ENSPPYG00000032434	EPOP (ENSPPYG00000033502)	MLLT6 (ENSPPYG00000008508)	ENSPPYG00000008507
Gibbon	MODERN SPECIES	105	HOXB2 (ENSNLEG00000002566) #10	ENSNLEG00000018815	SKAP1 (ENSNLEG00000002519) #13	SNX11 (ENSNLEG00000002479) #14	ENSNLEG00000002435	NFE2L1 (ENSNLEG00000002415) ##15	ENSNLEG00000002409 #16	ENSNLEG00000002109 #18	PRR15L (ENSNLEG00000002102) ##19	PNPO (ENSNLEG00000002062) #20	ENSNLEG00000002058	SP6 (ENSNLEG00000002050)	SCRN2 (ENSNLEG00000001940)	LRRC46 (ENSNLEG00000001902)	MRPL10 (ENSNLEG00000001803) #21	OSBPL7 (ENSNLEG00000001657) #22	ENSNLEG00000001655	ENSNLEG00000032565 #24	KPNB1 (ENSNLEG00000001446)
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.n	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574	ENSGT00940000159730
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.n	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.bb.a
Vervet Monkey	MODERN SPECIES	7	HOXB1 (ENSCSAG00000002538)	ENSCSAG00000019043	SKAP1 (ENSCSAG00000002542) #13	SNX11 (ENSCSAG00000002545) #14	CBX1 (ENSCSAG00000002547)	NFE2L1 (ENSCSAG00000002550) ##15	COPZ2 (ENSCSAG00000002558) #16	CDK5RAP3 (ENSCSAG00000002562) #18	PRR15L (ENSCSAG00000019042) ##19	PNPO (ENSCSAG00000002565) #20	SP2 (ENSCSAG00000002567)	SP6 (ENSCSAG00000019041)	SCRN2 (ENSCSAG00000002569)	LRRC46 (ENSCSAG00000002574)	MRPL10 (ENSCSAG00000002576) #21	OSBPL7 (ENSCSAG00000002580) #22	TBX21 (ENSCSAG00000002587)	TBKBP1 (ENSCSAG00000002598) #24	KPNB1 (ENSCSAG00000002605)	NPEPPS (ENSCSAG00000002610)	ENSCSAG00000002616	GPR179 (ENSCSAG00000002621)	SOCS7 (ENSCSAG00000002628)	ARHGAP23 (ENSCSAG00000002632)	SRCIN1 (ENSCSAG00000002635)	EPOP (ENSCSAG00000019040)	MLLT6 (ENSCSAG00000002640)	CISD3 (ENSCSAG00000002644)	PCGF2 (ENSCSAG00000002646)	PSMB3 (ENSCSAG00000002649)	PIP4K2B (ENSCSAG00000002651)
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.n	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.bb.a
Macaca	ANCESTRAL SPECIES	4	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.n	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.bb.a
Pig-tailed macaque	MODERN SPECIES	494	HOXB1 (ENSMNEG00000036848)	ENSMNEG00000033446	SKAP1 (ENSMNEG00000015541) #13	SNX11 (ENSMNEG00000034920) #14	CBX1 (ENSMNEG00000039720)	NFE2L1 (ENSMNEG00000037921) ##15	COPZ2 (ENSMNEG00000038720) #16	CDK5RAP3 (ENSMNEG00000029039) #18	PRR15L (ENSMNEG00000028174) ##19	PNPO (ENSMNEG00000037010) #20	SP2 (ENSMNEG00000029577)	SP6 (ENSMNEG00000023861)	SCRN2 (ENSMNEG00000031786)	LRRC46 (ENSMNEG00000037035)	MRPL10 (ENSMNEG00000030905) #21	OSBPL7 (ENSMNEG00000042829) #22	TBX21 (ENSMNEG00000036627)	TBKBP1 (ENSMNEG00000039009) #24	KPNB1 (ENSMNEG00000040927)	NPEPPS (ENSMNEG00000000757)	ENSMNEG00000044663	GPR179 (ENSMNEG00000042928)	SOCS7 (ENSMNEG00000032316)	ARHGAP23 (ENSMNEG00000037605)	ENSMNEG00000035424	SRCIN1 (ENSMNEG00000015519)	EPOP (ENSMNEG00000026740)	MLLT6 (ENSMNEG00000042666)	CISD3 (ENSMNEG00000030408)	PCGF2 (ENSMNEG00000028848)	PSMB3 (ENSMNEG00000037505)
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT01100000263493.a.b.b.a.a.b.b.a.a.a.a.a.a.a.d.a.b.b	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.n	ENSGT00940000160776	ENSGT00940000163244.d.b.a.b.b.b.b.b.b.b.b.a.b.a.a.b	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.bb.a
Rhesus	MODERN SPECIES	7	HOXB2 (ENSMMUG00000057001) #10	HOXB1 (ENSMMUG00000022212)	SKAP1 (ENSMMUG00000050742) #13	SNX11 (ENSMMUG00000020658) #14	CBX1 (ENSMMUG00000019882)	NFE2L1 (ENSMMUG00000021935) ##15	COPZ2 (ENSMMUG00000021934) #16	CDK5RAP3 (ENSMMUG00000004760) #18	PRR15L (ENSMMUG00000050551) ##19	PNPO (ENSMMUG00000003325) #20	SP2 (ENSMMUG00000004765)	ENSMMUG00000053935	SP6 (ENSMMUG00000061952)	MRPL10 (ENSMMUG00000021486)	LRRC46 (ENSMMUG00000061605)	OSBPL7 (ENSMMUG00000019039) #22	TBX21 (ENSMMUG00000057231)	TBKBP1 (ENSMMUG00000019762) #24	KPNB1 (ENSMMUG00000019760)	NPEPPS (ENSMMUG00000005869)	MRPL45 (ENSMMUG00000030213)	GPR179 (ENSMMUG00000020528)	ENSMMUG00000055904	SOCS7 (ENSMMUG00000020531)	ARHGAP23 (ENSMMUG00000020020)	SRCIN1 (ENSMMUG00000005041)	EPOP (ENSMMUG00000013378)	MLLT6 (ENSMMUG00000002637)	PCGF2 (ENSMMUG00000052879)	PSMB3 (ENSMMUG00000012363)	PIP4K2B (ENSMMUG00000012365)
Crab-eating macaque	MODERN SPECIES	7	SKAP1 (ENSMFAG00000038763) #13	ENSMFAG00000048147	ENSMFAG00000047205	SNX11 (ENSMFAG00000001845) #14	CBX1 (ENSMFAG00000036790)	NFE2L1 (ENSMFAG00000035583) ##15	COPZ2 (ENSMFAG00000045896) #16	CDK5RAP3 (ENSMFAG00000046364) #18	PRR15L (ENSMFAG00000030161) ##19	PNPO (ENSMFAG00000039285) #20	SP2 (ENSMFAG00000038712)	ENSMFAG00000052999	SP6 (ENSMFAG00000030247)	ENSMFAG00000030335	LRRC46 (ENSMFAG00000031915)	OSBPL7 (ENSMFAG00000001330) #22	TBX21 (ENSMFAG00000042504)	TBKBP1 (ENSMFAG00000001252) #24	KPNB1 (ENSMFAG00000030197)	NPEPPS (ENSMFAG00000003608)	MRPL45 (ENSMFAG00000043718)	GPR179 (ENSMFAG00000002774)	ENSMFAG00000064016	SOCS7 (ENSMFAG00000044702)	ENSMFAG00000062343	ENSMFAG00000049053	SRCIN1 (ENSMFAG00000031842)	MLLT6 (ENSMFAG00000039477)	CISD3 (ENSMFAG00000045774)	ENSMFAG00000059358	PCGF2 (ENSMFAG00000038330)
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.n	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.bb.a
Olive baboon	MODERN SPECIES	8	HOXB2 (ENSPANG00000034765) #10	HOXB1 (ENSPANG00000022886)	SKAP1 (ENSPANG00000022897) #13	ENSPANG00000026200	SNX11 (ENSPANG00000022898) #14	CBX1 (ENSPANG00000022906)	NFE2L1 (ENSPANG00000022904) ##15	COPZ2 (ENSPANG00000022903) #16	CDK5RAP3 (ENSPANG00000022902) #18	PNPO (ENSPANG00000022924) #20	SP2 (ENSPANG00000022922)	SP6 (ENSPANG00000017158)	SCRN2 (ENSPANG00000022920)	LRRC46 (ENSPANG00000022918)	MRPL10 (ENSPANG00000022926) #21	OSBPL7 (ENSPANG00000022928) #22	TBX21 (ENSPANG00000022107)	TBKBP1 (ENSPANG00000022108) #24	KPNB1 (ENSPANG00000022099)	NPEPPS (ENSPANG00000022080)	MRPL45 (ENSPANG00000022083)	GPR179 (ENSPANG00000022074)	SOCS7 (ENSPANG00000022062)	ARHGAP23 (ENSPANG00000022030)	SRCIN1 (ENSPANG00000022035)	ENSPANG00000041026	EPOP (ENSPANG00000041909)	MLLT6 (ENSPANG00000022028)	CISD3 (ENSPANG00000022020)	PCGF2 (ENSPANG00000022022)	PSMB3 (ENSPANG00000022023)
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.n	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.bb.a
Drill	MODERN SPECIES	1297	HOXB2 (ENSMLEG00000031955) #10	HOXB1 (ENSMLEG00000037557)	SKAP1 (ENSMLEG00000029308) #13	SNX11 (ENSMLEG00000039008) #14	CBX1 (ENSMLEG00000038745)	NFE2L1 (ENSMLEG00000039330) ##15	COPZ2 (ENSMLEG00000039090) #16	CDK5RAP3 (ENSMLEG00000033869) #18	PRR15L (ENSMLEG00000020212) ##19	PNPO (ENSMLEG00000040872) #20	SP2 (ENSMLEG00000032228)	SP6 (ENSMLEG00000027177)	SCRN2 (ENSMLEG00000041491)	LRRC46 (ENSMLEG00000031583)	MRPL10 (ENSMLEG00000042780) #21	OSBPL7 (ENSMLEG00000040663) #22
Sooty mangabey	MODERN SPECIES	564	HOXB1 (ENSCATG00000035575)	SKAP1 (ENSCATG00000044458) #13	ENSCATG00000019817	SNX11 (ENSCATG00000030351) #14	ENSCATG00000034735	NFE2L1 (ENSCATG00000040775) ##15	COPZ2 (ENSCATG00000042708) #16	CDK5RAP3 (ENSCATG00000006699) #18	PRR15L (ENSCATG00000020186) ##19	PNPO (ENSCATG00000039934) #20	ENSCATG00000003341	SP6 (ENSCATG00000020123)	SCRN2 (ENSCATG00000038846)	LRRC46 (ENSCATG00000031406)	MRPL10 (ENSCATG00000035686) #21	OSBPL7 (ENSCATG00000033623) #22	TBX21 (ENSCATG00000010529)	TBKBP1 (ENSCATG00000040564) #24	KPNB1 (ENSCATG00000037124)	NPEPPS (ENSCATG00000011160)	ENSCATG00000005112	GPR179 (ENSCATG00000016000)	SOCS7 (ENSCATG00000038123)	ARHGAP23 (ENSCATG00000031687)	SRCIN1 (ENSCATG00000035063)	ENSCATG00000032235	EPOP (ENSCATG00000021365)	MLLT6 (ENSCATG00000042085)	CISD3 (ENSCATG00000022041)	PCGF2 (ENSCATG00000042025)	PSMB3 (ENSCATG00000031567)
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.m	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574	ENSGT00940000159730
Golden snub-nosed monkey	MODERN SPECIES	585	HOXB2 (ENSRROG00000044849) #10	HOXB1 (ENSRROG00000042747)	SKAP1 (ENSRROG00000031517) #13	SNX11 (ENSRROG00000029464) #14	CBX1 (ENSRROG00000041227)	NFE2L1 (ENSRROG00000044774) ##15	COPZ2 (ENSRROG00000030969) #16	CDK5RAP3 (ENSRROG00000044651) #18	PRR15L (ENSRROG00000009484) ##19	PNPO (ENSRROG00000044027) #20	SP2 (ENSRROG00000037481)	SP6 (ENSRROG00000008983)	SCRN2 (ENSRROG00000037252)	LRRC46 (ENSRROG00000039559)	MRPL10 (ENSRROG00000033938) #21	OSBPL7 (ENSRROG00000017659) #22
Black snub-nosed monkey	MODERN SPECIES	614												SP6 (ENSRBIG00000030852)	LRRC46 (ENSRBIG00000036612)	SCRN2 (ENSRBIG00000017158)	MRPL10 (ENSRBIG00000008990) #21	OSBPL7 (ENSRBIG00000042030) #22	TBX21 (ENSRBIG00000043622)	TBKBP1 (ENSRBIG00000042820) #24	KPNB1 (ENSRBIG00000002254)	NPEPPS (ENSRBIG00000031000)	MRPL45 (ENSRBIG00000042781)	GPR179 (ENSRBIG00000038216)	SOCS7 (ENSRBIG00000034893)	ARHGAP23 (ENSRBIG00000044119)	SRCIN1 (ENSRBIG00000044193)	EPOP (ENSRBIG00000041584)	MLLT6 (ENSRBIG00000042606)	CISD3 (ENSRBIG00000033853)	PCGF2 (ENSRBIG00000030186)	PSMB3 (ENSRBIG00000028323)	PIP4K2B (ENSRBIG00000030509)
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898.a	ENSGT00550000074898.b	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Cebidae	ANCESTRAL SPECIES	10	ENSGT00940000159503	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898.a	ENSGT00550000074898.b	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Marmoset	MODERN SPECIES	17	ENSCJAG00000038853	SKAP1 (ENSCJAG00000007504) #13	SNX11 (ENSCJAG00000039549) #14	CBX1 (ENSCJAG00000042052)	NFE2L1 (ENSCJAG00000007542) ##15	ENSCJAG00000058197	COPZ2 (ENSCJAG00000007567) #16	CDK5RAP3 (ENSCJAG00000007669) #18	PRR15L (ENSCJAG00000044487) ##19	PNPO (ENSCJAG00000007693) #20	SP2 (ENSCJAG00000007713)	SP6 (ENSCJAG00000043946)	SCRN2 (ENSCJAG00000047705)	LRRC46 (ENSCJAG00000007776)	MRPL10 (ENSCJAG00000007787) #21	OSBPL7 (ENSCJAG00000007585) #22	TBX21 (ENSCJAG00000007796)	TBKBP1 (ENSCJAG00000045710) #24	KPNB1 (ENSCJAG00000007834)	NPEPPS (ENSCJAG00000007985)	ENSCJAG00000048573	MRPL45 (ENSCJAG00000008080)	GPR179 (ENSCJAG00000008100)	SOCS7 (ENSCJAG00000008108)	ENSCJAG00000008111	ARHGAP23 (ENSCJAG00000008112)	SRCIN1 (ENSCJAG00000008123)	EPOP (ENSCJAG00000023426)	MLLT6 (ENSCJAG00000008169)	CISD3 (ENSCJAG00000008212)	PCGF2 (ENSCJAG00000008215)
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00940000159503	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898.a	ENSGT00550000074898.b	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.bb.a
Capuchin	MODERN SPECIES	228	HOXB2 (ENSCCAG00000024035) #10	HOXB1 (ENSCCAG00000027667)	ENSCCAG00000019181	SKAP1 (ENSCCAG00000035663) #13	SNX11 (ENSCCAG00000030167) #14	CBX1 (ENSCCAG00000025085)	NFE2L1 (ENSCCAG00000029090) ##15	COPZ2 (ENSCCAG00000021292) #16	CDK5RAP3 (ENSCCAG00000038053) #18	PNPO (ENSCCAG00000029175) #20	SP2 (ENSCCAG00000038047)	SP6 (ENSCCAG00000020330)	SCRN2 (ENSCCAG00000031435)	LRRC46 (ENSCCAG00000030568)	MRPL10 (ENSCCAG00000023150) #21	OSBPL7 (ENSCCAG00000034097) #22	TBX21 (ENSCCAG00000026112)	TBKBP1 (ENSCCAG00000026129) #24	ENSCCAG00000029263	NPEPPS (ENSCCAG00000035472)	MRPL45 (ENSCCAG00000034579)	GPR179 (ENSCCAG00000037056)	SOCS7 (ENSCCAG00000033044)	ARHGAP23 (ENSCCAG00000025162)	SRCIN1 (ENSCCAG00000029783)	ENSCCAG00000023743	MLLT6 (ENSCCAG00000028213)	CISD3 (ENSCCAG00000023283)	PCGF2 (ENSCCAG00000030044)	PSMB3 (ENSCCAG00000030110)	PIP4K2B (ENSCCAG00000031168)
Bolivian squirrel monkey	MODERN SPECIES	86	HOXB1 (ENSSBOG00000034875)	ENSSBOG00000019520	SKAP1 (ENSSBOG00000029434) #13	SNX11 (ENSSBOG00000026967) #14	ENSSBOG00000031880	NFE2L1 (ENSSBOG00000023867) ##15	COPZ2 (ENSSBOG00000033633) #16	CDK5RAP3 (ENSSBOG00000033272) #18	PRR15L (ENSSBOG00000019240) ##19	PNPO (ENSSBOG00000021213) #20	SP2 (ENSSBOG00000029098)	SP6 (ENSSBOG00000014210)	SCRN2 (ENSSBOG00000027391)	LRRC46 (ENSSBOG00000026980)	MRPL10 (ENSSBOG00000004214) #21	OSBPL7 (ENSSBOG00000033435) #22	TBX21 (ENSSBOG00000028744)	ENSSBOG00000029189 #24	ENSSBOG00000014766	KPNB1 (ENSSBOG00000030025)	NPEPPS (ENSSBOG00000032725)	MRPL45 (ENSSBOG00000028242)	GPR179 (ENSSBOG00000022698)	SOCS7 (ENSSBOG00000031544)	ARHGAP23 (ENSSBOG00000017157)	ENSSBOG00000020882	SRCIN1 (ENSSBOG00000015321)	MLLT6 (ENSSBOG00000029198)	CISD3 (ENSSBOG00000036248)	PCGF2 (ENSSBOG00000032762)	ENSSBOG00000022909
Mas night monkey	MODERN SPECIES	481	HOXB2 (ENSANAG00000023626) #10	HOXB1 (ENSANAG00000032306)	ENSANAG00000023400	SKAP1 (ENSANAG00000026853) #13	SNX11 (ENSANAG00000022588) #14	ENSANAG00000036853	NFE2L1 (ENSANAG00000027606) ##15	COPZ2 (ENSANAG00000023309) #16	CDK5RAP3 (ENSANAG00000021880) #18	PNPO (ENSANAG00000026080) #20	SP2 (ENSANAG00000032738)	SP6 (ENSANAG00000019338)	SCRN2 (ENSANAG00000021482)	LRRC46 (ENSANAG00000028496)	MRPL10 (ENSANAG00000022792) #21	OSBPL7 (ENSANAG00000021406) #22	TBX21 (ENSANAG00000037999)	TBKBP1 (ENSANAG00000020710) #24	ENSANAG00000024932	ENSANAG00000019395	NPEPPS (ENSANAG00000028371)	MRPL45 (ENSANAG00000028167)	GPR179 (ENSANAG00000033667)	SOCS7 (ENSANAG00000028278)	ARHGAP23 (ENSANAG00000026348)	ENSANAG00000022130	SRCIN1 (ENSANAG00000027395)	MLLT6 (ENSANAG00000037599)	CISD3 (ENSANAG00000030622)	PCGF2 (ENSANAG00000027578)	PSMB3 (ENSANAG00000032637)
Tarsier	MODERN SPECIES	7208				SKAP1 (ENSTSYG00000008218) #13	SNX11 (ENSTSYG00000035487) #14	CBX1 (ENSTSYG00000034806)	NFE2L1 (ENSTSYG00000011468) ##15	COPZ2 (ENSTSYG00000030074) #16	CDK5RAP3 (ENSTSYG00000010313) #18	PNPO (ENSTSYG00000002012) #20	SP2 (ENSTSYG00000013766)	SP6 (ENSTSYG00000031192)	SCRN2 (ENSTSYG00000003730)	LRRC46 (ENSTSYG00000003710)	MRPL10 (ENSTSYG00000034759) #21	OSBPL7 (ENSTSYG00000014378) #22
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590.h	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590.h	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590.h	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Coquerels sifaka	MODERN SPECIES	120	HOXB3 (ENSPCOG00000020113) #9	HOXB2 (ENSPCOG00000017380) #10	HOXB1 (ENSPCOG00000025930)	SKAP1 (ENSPCOG00000022221) #13	SNX11 (ENSPCOG00000011015) #14	ENSPCOG00000010902	NFE2L1 (ENSPCOG00000021740) ##15	COPZ2 (ENSPCOG00000018359) #16	CDK5RAP3 (ENSPCOG00000016598) #18	PNPO (ENSPCOG00000017906) #20	SP2 (ENSPCOG00000017198)	SP6 (ENSPCOG00000008529)	SCRN2 (ENSPCOG00000014438)	LRRC46 (ENSPCOG00000015829)	MRPL10 (ENSPCOG00000025492) #21	OSBPL7 (ENSPCOG00000019714) #22	TBX21 (ENSPCOG00000014387)	TBKBP1 (ENSPCOG00000026427) #24	KPNB1 (ENSPCOG00000026259)	ENSPCOG00000014331	ENSPCOG00000027158	MRPL45 (ENSPCOG00000014660)	GPR179 (ENSPCOG00000007958)	SOCS7 (ENSPCOG00000023874)	ARHGAP23 (ENSPCOG00000013530)	SRCIN1 (ENSPCOG00000008761)	MLLT6 (ENSPCOG00000016436)	CISD3 (ENSPCOG00000023611)	PCGF2 (ENSPCOG00000026730)	ENSPCOG00000023023	PIP4K2B (ENSPCOG00000027143)
Greater bamboo lemur	MODERN SPECIES	107				NFE2L1 (ENSPSMG00000007285) ##15	ENSPSMG00000007339 #16	ENSPSMG00000007342	ENSPSMG00000007395 #18	PRR15L (ENSPSMG00000007406) ##19	PNPO (ENSPSMG00000007445) #20	SP2 (ENSPSMG00000007456)	ENSPSMG00000007462	SP6 (ENSPSMG00000007463)	SCRN2 (ENSPSMG00000007491)	LRRC46 (ENSPSMG00000007500)	MRPL10 (ENSPSMG00000007514) #21	OSBPL7 (ENSPSMG00000007730) #22	TBX21 (ENSPSMG00000007791)	TBKBP1 (ENSPSMG00000007810) #24	KPNB1 (ENSPSMG00000007848)	NPEPPS (ENSPSMG00000007984)	MRPL45 (ENSPSMG00000008060)	GPR179 (ENSPSMG00000008075)	SOCS7 (ENSPSMG00000008100)	ARHGAP23 (ENSPSMG00000008194)	SRCIN1 (ENSPSMG00000008297)	ENSPSMG00000008308	EPOP (ENSPSMG00000008312)	MLLT6 (ENSPSMG00000008343)	CISD3 (ENSPSMG00000008353)	PCGF2 (ENSPSMG00000008411)	PSMB3 (ENSPSMG00000008459)
Mouse lemur	MODERN SPECIES	7	HOXB2 (ENSMICG00000038222) #10	HOXB1 (ENSMICG00000048152)	SKAP1 (ENSMICG00000047158) #13	ENSMICG00000029923	SNX11 (ENSMICG00000014741) #14	NFE2L1 (ENSMICG00000014716) ##15	ENSMICG00000009510	COPZ2 (ENSMICG00000014097) #16	CDK5RAP3 (ENSMICG00000014077) #18	ENSMICG00000014065 #20	SP2 (ENSMICG00000036051)	SP6 (ENSMICG00000047695)	SCRN2 (ENSMICG00000004823)	LRRC46 (ENSMICG00000004816)	MRPL10 (ENSMICG00000048091) #21	OSBPL7 (ENSMICG00000004799) #22	TBX21 (ENSMICG00000035345)	TBKBP1 (ENSMICG00000012069) #24	KPNB1 (ENSMICG00000012059)	NPEPPS (ENSMICG00000012034)	MRPL45 (ENSMICG00000000626)	GPR179 (ENSMICG00000000628)	SOCS7 (ENSMICG00000000636)	ARHGAP23 (ENSMICG00000000638)	SRCIN1 (ENSMICG00000000639)	MLLT6 (ENSMICG00000002976)	CISD3 (ENSMICG00000030046)	PCGF2 (ENSMICG00000002994)	ENSMICG00000002997	PIP4K2B (ENSMICG00000003001)	CWC25 (ENSMICG00000003004)
Bushbaby	MODERN SPECIES	133	HOXB2 (ENSOGAG00000029280) #10	HOXB1 (ENSOGAG00000031645)	SKAP1 (ENSOGAG00000015855) #13	SNX11 (ENSOGAG00000015854) #14	CBX1 (ENSOGAG00000005658)	NFE2L1 (ENSOGAG00000025191) ##15	COPZ2 (ENSOGAG00000004954) #16	CDK5RAP3 (ENSOGAG00000004951) #18	PRR15L (ENSOGAG00000006187) ##19	PNPO (ENSOGAG00000006186) #20	SP2 (ENSOGAG00000030380)	SP6 (ENSOGAG00000030282)	SCRN2 (ENSOGAG00000006181)	LRRC46 (ENSOGAG00000006177)	MRPL10 (ENSOGAG00000006173) #21	OSBPL7 (ENSOGAG00000006166) #22	TBX21 (ENSOGAG00000006160)	TBKBP1 (ENSOGAG00000032523) #24	KPNB1 (ENSOGAG00000006153)	NPEPPS (ENSOGAG00000006365)	MRPL45 (ENSOGAG00000015816)	GPR179 (ENSOGAG00000031431)	SOCS7 (ENSOGAG00000012422)	ARHGAP23 (ENSOGAG00000030856)	SRCIN1 (ENSOGAG00000009948)	EPOP (ENSOGAG00000030366)	MLLT6 (ENSOGAG00000011422)	CISD3 (ENSOGAG00000033905)	PCGF2 (ENSOGAG00000027635)	PSMB3 (ENSOGAG00000008778)	PIP4K2B (ENSOGAG00000008781)
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Glires	ANCESTRAL SPECIES	3	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.o	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.o	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Arctic ground squirrel	MODERN SPECIES	46	HOXB2 (ENSUPAG00010006336) #10	HOXB1 (ENSUPAG00010006340)	SKAP1 (ENSUPAG00010006345) #13	SNX11 (ENSUPAG00010006370) #14	CBX1 (ENSUPAG00010006381)	NFE2L1 (ENSUPAG00010006396) ##15	COPZ2 (ENSUPAG00010006455) #16	CDK5RAP3 (ENSUPAG00010006466) #18	PRR15L (ENSUPAG00010006473) ##19	PNPO (ENSUPAG00010006483) #20	SP2 (ENSUPAG00010006507)	SP6 (ENSUPAG00010006522)	SCRN2 (ENSUPAG00010006526)	LRRC46 (ENSUPAG00010006533)	MRPL10 (ENSUPAG00010006539) #21	OSBPL7 (ENSUPAG00010006545) #22	TBX21 (ENSUPAG00010006582)	TBKBP1 (ENSUPAG00010006591) #24	KPNB1 (ENSUPAG00010006624)	NPEPPS (ENSUPAG00010006649)	ENSUPAG00010006685	GPR179 (ENSUPAG00010006698)	SOCS7 (ENSUPAG00010006716)	ARHGAP23 (ENSUPAG00010006763)	SRCIN1 (ENSUPAG00010006849)	MLLT6 (ENSUPAG00010006969)	CISD3 (ENSUPAG00010007056)	PCGF2 (ENSUPAG00010007076)	PSMB3 (ENSUPAG00010007131)	PIP4K2B (ENSUPAG00010007141)	CWC25 (ENSUPAG00010007155)
Squirrel	MODERN SPECIES	90	HOXB2 (ENSSTOG00000023586) #10	HOXB1 (ENSSTOG00000028630)	SKAP1 (ENSSTOG00000013692) #13	SNX11 (ENSSTOG00000013684) #14	CBX1 (ENSSTOG00000023986)	NFE2L1 (ENSSTOG00000013664) ##15	ENSSTOG00000027550 #16	CDK5RAP3 (ENSSTOG00000006244) #18	PRR15L (ENSSTOG00000006235) ##19	PNPO (ENSSTOG00000006221) #20	SP2 (ENSSTOG00000015926)	SP6 (ENSSTOG00000001607)	SCRN2 (ENSSTOG00000027108)	LRRC46 (ENSSTOG00000002068)	MRPL10 (ENSSTOG00000024617) #21	OSBPL7 (ENSSTOG00000001636) #22	TBX21 (ENSSTOG00000001626)	TBKBP1 (ENSSTOG00000023713) #24	KPNB1 (ENSSTOG00000007896)	NPEPPS (ENSSTOG00000004901)	ENSSTOG00000000304	GPR179 (ENSSTOG00000024299)	SOCS7 (ENSSTOG00000000068)	ARHGAP23 (ENSSTOG00000029240)	SRCIN1 (ENSSTOG00000028994)	EPOP (ENSSTOG00000022964)	MLLT6 (ENSSTOG00000014229)	CISD3 (ENSSTOG00000022806)	PCGF2 (ENSSTOG00000014254)	PSMB3 (ENSSTOG00000014258)	PIP4K2B (ENSSTOG00000014263)
Alpin marmot	MODERN SPECIES	126									PRR15L (ENSMMMG00000020424) ##19	PNPO (ENSMMMG00000020407) #20	SP2 (ENSMMMG00000020394)	SP6 (ENSMMMG00000020386)	SCRN2 (ENSMMMG00000020372)	LRRC46 (ENSMMMG00000020356)	MRPL10 (ENSMMMG00000020352) #21	OSBPL7 (ENSMMMG00000020336) #22	ENSMMMG00000020333	TBX21 (ENSMMMG00000020329)	ENSMMMG00000020322 #24	KPNB1 (ENSMMMG00000020318)	NPEPPS (ENSMMMG00000020297)	ENSMMMG00000020288	GPR179 (ENSMMMG00000020262)	SOCS7 (ENSMMMG00000020236)	ARHGAP23 (ENSMMMG00000020178)	ENSMMMG00000020172	SRCIN1 (ENSMMMG00000020155)	EPOP (ENSMMMG00000020150)	MLLT6 (ENSMMMG00000019996)	CISD3 (ENSMMMG00000019991)	PCGF2 (ENSMMMG00000019954)
Eurasian red squirrel	MODERN SPECIES	12	HOXB2 (ENSSVLG00005019378) #10	HOXB1 (ENSSVLG00005019304)	SKAP1 (ENSSVLG00005019232) #13	SNX11 (ENSSVLG00005019122) #14	CBX1 (ENSSVLG00005019034)	NFE2L1 (ENSSVLG00005018798) ##15	COPZ2 (ENSSVLG00005018641) #16	CDK5RAP3 (ENSSVLG00005018459) #18	PRR15L (ENSSVLG00005018399) ##19	PNPO (ENSSVLG00005018295) #20	ENSSVLG00005018218	SP6 (ENSSVLG00005018194)	SCRN2 (ENSSVLG00005018077)	LRRC46 (ENSSVLG00005018036)	MRPL10 (ENSSVLG00005017985) #21	OSBPL7 (ENSSVLG00005017757) #22	TBX21 (ENSSVLG00005017653)	TBKBP1 (ENSSVLG00005017602) #24	KPNB1 (ENSSVLG00005017557)	NPEPPS (ENSSVLG00005017198)	MRPL45 (ENSSVLG00005017084)	ENSSVLG00005017021	GPR179 (ENSSVLG00005016761)	SOCS7 (ENSSVLG00005016676)	ARHGAP23 (ENSSVLG00005016593)	SRCIN1 (ENSSVLG00005016103)	ENSSVLG00005016032	ENSSVLG00005016009	EPOP (ENSSVLG00005016002)	MLLT6 (ENSSVLG00005015954)	ENSSVLG00005015868
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874	ENSGT00440000039055
Long-tailed chinchilla	MODERN SPECIES	158	HOXB2 (ENSCLAG00000015271) #10	HOXB1 (ENSCLAG00000013047)	SKAP1 (ENSCLAG00000015423) #13	SNX11 (ENSCLAG00000015837) #14	CBX1 (ENSCLAG00000013587)	NFE2L1 (ENSCLAG00000014836) ##15	COPZ2 (ENSCLAG00000013544) #16	CDK5RAP3 (ENSCLAG00000012292) #18	PRR15L (ENSCLAG00000017903) ##19	PNPO (ENSCLAG00000013871) #20	SP2 (ENSCLAG00000014115)	SP6 (ENSCLAG00000016276)	LRRC46 (ENSCLAG00000016713)	SCRN2 (ENSCLAG00000013965)	MRPL10 (ENSCLAG00000015400) #21	OSBPL7 (ENSCLAG00000014839) #22	TBX21 (ENSCLAG00000015235)	ENSCLAG00000015338 #24	KPNB1 (ENSCLAG00000017091)	NPEPPS (ENSCLAG00000016661)	MRPL45 (ENSCLAG00000015324)	GPR179 (ENSCLAG00000014803)	SOCS7 (ENSCLAG00000015232)	ARHGAP23 (ENSCLAG00000014290)	SRCIN1 (ENSCLAG00000015589)	MLLT6 (ENSCLAG00000013781)	CISD3 (ENSCLAG00000014350)	PCGF2 (ENSCLAG00000016096)	PSMB3 (ENSCLAG00000015553)	PIP4K2B (ENSCLAG00000014591)	CWC25 (ENSCLAG00000017102)
Degu	MODERN SPECIES	97	HOXB2 (ENSODEG00000017153) #10	HOXB1 (ENSODEG00000017050)	SKAP1 (ENSODEG00000017533) #13	SNX11 (ENSODEG00000017458) #14	CBX1 (ENSODEG00000017272)	NFE2L1 (ENSODEG00000017348) ##15	ENSODEG00000020421	COPZ2 (ENSODEG00000017565) #16	ENSODEG00000017229 #18	PNPO (ENSODEG00000017424) #20	SP2 (ENSODEG00000017126)	SP6 (ENSODEG00000017625)	SCRN2 (ENSODEG00000017395)	LRRC46 (ENSODEG00000017367)	MRPL10 (ENSODEG00000017536) #21	OSBPL7 (ENSODEG00000017364) #22	TBX21 (ENSODEG00000017610)	ENSODEG00000017455 #24	KPNB1 (ENSODEG00000017287)	NPEPPS (ENSODEG00000017337)	SOCS7 (ENSODEG00000017559)	MRPL45 (ENSODEG00000017631)	GPR179 (ENSODEG00000017327)	ARHGAP23 (ENSODEG00000017612)	SRCIN1 (ENSODEG00000017506)	MLLT6 (ENSODEG00000017604)	CISD3 (ENSODEG00000017593)	ENSODEG00000017437	PIP4K2B (ENSODEG00000017411)	CWC25 (ENSODEG00000017487)	C17orf98 (ENSODEG00000017432)
Guinea pig	MODERN SPECIES	53	HOXB2 (ENSCPOG00000035468) #10	HOXB1 (ENSCPOG00000022183)	SKAP1 (ENSCPOG00000022118) #13	SNX11 (ENSCPOG00000020234) #14	CBX1 (ENSCPOG00000034435)	NFE2L1 (ENSCPOG00000030805) ##15	COPZ2 (ENSCPOG00000019500) #16	CDK5RAP3 (ENSCPOG00000007275) #18	PRR15L (ENSCPOG00000035567) ##19	PNPO (ENSCPOG00000003187) #20	SP2 (ENSCPOG00000014943)	SP6 (ENSCPOG00000007638)	SCRN2 (ENSCPOG00000006929)	LRRC46 (ENSCPOG00000006925)	MRPL10 (ENSCPOG00000037104) #21	OSBPL7 (ENSCPOG00000006914) #22	TBX21 (ENSCPOG00000026273)	TBKBP1 (ENSCPOG00000036345) #24	KPNB1 (ENSCPOG00000006566)	NPEPPS (ENSCPOG00000006559)	MRPL45 (ENSCPOG00000001574)	GPR179 (ENSCPOG00000027503)	SOCS7 (ENSCPOG00000011473)	ARHGAP23 (ENSCPOG00000025821)	SRCIN1 (ENSCPOG00000022478)	EPOP (ENSCPOG00000026798)	MLLT6 (ENSCPOG00000006561)	CISD3 (ENSCPOG00000036120)	PCGF2 (ENSCPOG00000027284)	PSMB3 (ENSCPOG00000025974)	PIP4K2B (ENSCPOG00000005470)
Naked mole-rat female	MODERN SPECIES	12	HOXB2 (ENSHGLG00000010090) #10	HOXB1 (ENSHGLG00000009781)	SKAP1 (ENSHGLG00000014563) #13	SNX11 (ENSHGLG00000016837) #14	CBX1 (ENSHGLG00000013574)	NFE2L1 (ENSHGLG00000012592) ##15	COPZ2 (ENSHGLG00000018543) #16	CDK5RAP3 (ENSHGLG00000019464) #18	PRR15L (ENSHGLG00000014696) ##19	PNPO (ENSHGLG00000013159) #20	SP2 (ENSHGLG00000009902)	SP6 (ENSHGLG00000021113)	SCRN2 (ENSHGLG00000041375)	LRRC46 (ENSHGLG00000035931)	MRPL10 (ENSHGLG00000048399) #21	OSBPL7 (ENSHGLG00000012525) #22	TBX21 (ENSHGLG00000012216)	TBKBP1 (ENSHGLG00000049817) #24	KPNB1 (ENSHGLG00000014138)	ENSHGLG00000012466	ENSHGLG00000010863	ENSHGLG00000050482	ENSHGLG00000041148	SOCS7 (ENSHGLG00000035093)	ARHGAP23 (ENSHGLG00000012944)	SRCIN1 (ENSHGLG00000010912)	ENSHGLG00000021180	EPOP (ENSHGLG00000047748)	MLLT6 (ENSHGLG00000012901)	CISD3 (ENSHGLG00000009890)	PCGF2 (ENSHGLG00000015321)
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Muroidea	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.a.a	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Northern American deer mouse	MODERN SPECIES	21	Skap1 (ENSPEMG00000000585) #13	ENSPEMG00000020286	Snx11 (ENSPEMG00000000381) #14	Cbx1 (ENSPEMG00000020976)	Nfe2l1 (ENSPEMG00000010512) ##15	Copz2 (ENSPEMG00000011137) #16	Cdk5rap3 (ENSPEMG00000020712) #18	ENSPEMG00000030963	Prr15l (ENSPEMG00000024436) ##19	Pnpo (ENSPEMG00000025094) #20	Sp2 (ENSPEMG00000017112)	Sp6 (ENSPEMG00000001231)	Scrn2 (ENSPEMG00000020381)	Lrrc46 (ENSPEMG00000020507)	Mrpl10 (ENSPEMG00000014613) #21	Osbpl7 (ENSPEMG00000001423) #22	Tbx21 (ENSPEMG00000010056)	Tbkbp1 (ENSPEMG00000027762) #24	Kpnb1 (ENSPEMG00000017783)	Npepps (ENSPEMG00000012220)	Mrpl45 (ENSPEMG00000005654)	ENSPEMG00000027307	Socs7 (ENSPEMG00000000521)	Arhgap23 (ENSPEMG00000004296)	Srcin1 (ENSPEMG00000014663)	Epop (ENSPEMG00000026437)	Mllt6 (ENSPEMG00000015310)	ENSPEMG00000007333	Pcgf2 (ENSPEMG00000000237)	Psmb3 (ENSPEMG00000011581)	Pip4k2b (ENSPEMG00000018039)
Prairie vole	MODERN SPECIES	114	Hoxb2 (ENSMOCG00000014846) #10	Hoxb1 (ENSMOCG00000002452)	Skap1 (ENSMOCG00000018431) #13	Snx11 (ENSMOCG00000019303) #14	Cbx1 (ENSMOCG00000001520)	Nfe2l1 (ENSMOCG00000016002) ##15	Copz2 (ENSMOCG00000022427) #16	Cdk5rap3 (ENSMOCG00000019534) #18	Prr15l (ENSMOCG00000006695) ##19	Pnpo (ENSMOCG00000011655) #20	Sp2 (ENSMOCG00000020935)	Sp6 (ENSMOCG00000007065)	Scrn2 (ENSMOCG00000019511)	Lrrc46 (ENSMOCG00000016707)	Mrpl10 (ENSMOCG00000019451) #21	Osbpl7 (ENSMOCG00000021054) #22	Tbx21 (ENSMOCG00000004097)	Tbkbp1 (ENSMOCG00000017020) #24	Kpnb1 (ENSMOCG00000003683)	Npepps (ENSMOCG00000011600)	Mrpl45 (ENSMOCG00000002139)	ENSMOCG00000022822	Socs7 (ENSMOCG00000015144)	Arhgap23 (ENSMOCG00000005846)	Srcin1 (ENSMOCG00000017212)	Epop (ENSMOCG00000020613)	Mllt6 (ENSMOCG00000002332)	Cisd3 (ENSMOCG00000022560)	Pcgf2 (ENSMOCG00000021209)	ENSMOCG00000015851	Pip4k2b (ENSMOCG00000011115)
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.a.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.r	ENSGT00940000159874
Golden Hamster	MODERN SPECIES	674	Hoxb3 (ENSMAUG00000011251) #9	Hoxb2 (ENSMAUG00000021979) #10	Hoxb1 (ENSMAUG00000013237)	Skap1 (ENSMAUG00000022191) #13	Snx11 (ENSMAUG00000021528) #14	ENSMAUG00000003463	Nfe2l1 (ENSMAUG00000020456) ##15	Copz2 (ENSMAUG00000010560) #16	Cdk5rap3 (ENSMAUG00000007991) #18	Pnpo (ENSMAUG00000021706) #20	Sp2 (ENSMAUG00000019269)	Sp6 (ENSMAUG00000009667)	Scrn2 (ENSMAUG00000010014)	Lrrc46 (ENSMAUG00000019416)	Mrpl10 (ENSMAUG00000000820) #21	Osbpl7 (ENSMAUG00000013876) #22	Tbx21 (ENSMAUG00000017507)	Tbkbp1 (ENSMAUG00000018604) #24	Kpnb1 (ENSMAUG00000006211)	Npepps (ENSMAUG00000017383)	Mrpl45 (ENSMAUG00000021636)	ENSMAUG00000015632	Socs7 (ENSMAUG00000015461)	Arhgap23 (ENSMAUG00000018856)	Srcin1 (ENSMAUG00000021175)	Epop (ENSMAUG00000015662)	ENSMAUG00000019155	Pip4k2b (ENSMAUG00000012875)	Cwc25 (ENSMAUG00000009241)	1700001P01Rik (ENSMAUG00000013917)	Rpl23 (ENSMAUG00000012907)
Chinese hamster chok1gshd	MODERN SPECIES	33	Hoxb1 (ENSCGRG00001024619)	ENSCGRG00001023355 #13	ENSCGRG00001020759 #13	Snx11 (ENSCGRG00001022221) #14	Cbx1 (ENSCGRG00001014799)	Nfe2l1 (ENSCGRG00001015287) ##15	Copz2 (ENSCGRG00001014767) #16	Cdk5rap3 (ENSCGRG00001006966) #18	Prr15l (ENSCGRG00001008926) ##19	Pnpo (ENSCGRG00001018189) #20	Sp2 (ENSCGRG00001010976)	Sp6 (ENSCGRG00001002797)	Scrn2 (ENSCGRG00001022143)	Lrrc46 (ENSCGRG00001019758)	Mrpl10 (ENSCGRG00001024199) #21	Osbpl7 (ENSCGRG00001013737) #22	Tbx21 (ENSCGRG00001008276)	Tbkbp1 (ENSCGRG00001018526) #24	Kpnb1 (ENSCGRG00001016042)	Npepps (ENSCGRG00001005930)	Mrpl45 (ENSCGRG00001000066)	Gpr179 (ENSCGRG00001014708)	Socs7 (ENSCGRG00001021949)	Arhgap23 (ENSCGRG00001018199)	Srcin1 (ENSCGRG00001017021)	ENSCGRG00001002748	Epop (ENSCGRG00001011711)	Mllt6 (ENSCGRG00001021735)	Cisd3 (ENSCGRG00001010662)	Pcgf2 (ENSCGRG00001021517)	ENSCGRG00001013947
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Mus	ANCESTRAL SPECIES	2	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00800000125316	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00800000125316	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.p.a
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00800000125316	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.p.a
Mouse	MODERN SPECIES	2	Hoxb2 (ENSMUSG00000075588) #10	Hoxb1 (ENSMUSG00000018973)	Skap1 (ENSMUSG00000057058) #13	Snx11 (ENSMUSG00000020876) #14	Cbx1 (ENSMUSG00000018666)	Nfe2l1 (ENSMUSG00000038615) ##15	Copz2 (ENSMUSG00000018672) #16	Cdk5rap3 (ENSMUSG00000018669) #18	Prr15l (ENSMUSG00000047040) ##19	Pnpo (ENSMUSG00000018659) #20	Sp2 (ENSMUSG00000018678)	Sp6 (ENSMUSG00000038560)	Scrn2 (ENSMUSG00000020877)	Lrrc46 (ENSMUSG00000020878)	Mrpl10 (ENSMUSG00000001445) #21	Osbpl7 (ENSMUSG00000038534) #22	Tbx21 (ENSMUSG00000001444)	Tbkbp1 (ENSMUSG00000038517) #24	Kpnb1 (ENSMUSG00000001440)	Npepps (ENSMUSG00000001441)	Mrpl45 (ENSMUSG00000018882)	Gpr179 (ENSMUSG00000070337)	Socs7 (ENSMUSG00000038485)	Arhgap23 (ENSMUSG00000049807)	Srcin1 (ENSMUSG00000038453)	Epop (ENSMUSG00000043439)	Mllt6 (ENSMUSG00000038437)	Cisd3 (ENSMUSG00000078695)	Pcgf2 (ENSMUSG00000018537)	Psmb3 (ENSMUSG00000069744)	Pip4k2b (ENSMUSG00000018547)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc.b	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00800000125316	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h.p.a
Steppe mouse	MODERN SPECIES	3291	Hoxb1 (ENSMSIG00000018752)	Skap1 (ENSMSIG00000018601) #13	Snx11 (ENSMSIG00000018546) #14	ENSMSIG00000018520	Cbx1 (ENSMSIG00000018447)	Nfe2l1 (ENSMSIG00000018374) ##15	Copz2 (ENSMSIG00000018337) #16	Cdk5rap3 (ENSMSIG00000018309) #18	ENSMSIG00000018270 ##19	ENSMSIG00000018267 #20	Sp2 (ENSMSIG00000018237)	Sp6 (ENSMSIG00000018223)	Scrn2 (ENSMSIG00000018202)	Lrrc46 (ENSMSIG00000018171)	Mrpl10 (ENSMSIG00000018160) #21	Osbpl7 (ENSMSIG00000018093) #22	Tbx21 (ENSMSIG00000018069)	Tbkbp1 (ENSMSIG00000018040) #24	Kpnb1 (ENSMSIG00000017971)	Npepps (ENSMSIG00000017886)	Mrpl45 (ENSMSIG00000017873)	Gpr179 (ENSMSIG00000017852)	Socs7 (ENSMSIG00000017810)	ENSMSIG00000017794	Arhgap23 (ENSMSIG00000017701)	Srcin1 (ENSMSIG00000017360)	Epop (ENSMSIG00000017344)	Mllt6 (ENSMSIG00000017258)	Cisd3 (ENSMSIG00000017247)	Pcgf2 (ENSMSIG00000017227)	Psmb3 (ENSMSIG00000017213)
spretus	MODERN SPECIES	2	Hoxb1 (MGP_SPRETEiJ_G0017878)	MGP_SPRETEiJ_G0017879 #13	Snx11 (MGP_SPRETEiJ_G0017880) #14	Cbx1 (MGP_SPRETEiJ_G0017881)	MGP_SPRETEiJ_G0017882	Nfe2l1 (MGP_SPRETEiJ_G0017883) ##15	Copz2 (MGP_SPRETEiJ_G0017884) #16	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #18	Prr15l (MGP_SPRETEiJ_G0017886) ##19	Pnpo (MGP_SPRETEiJ_G0017887) #20	Sp2 (MGP_SPRETEiJ_G0017888)	Sp6 (MGP_SPRETEiJ_G0017889)	Scrn2 (MGP_SPRETEiJ_G0017890)	Lrrc46 (MGP_SPRETEiJ_G0017891)	Mrpl10 (MGP_SPRETEiJ_G0017892) #21	Osbpl7 (MGP_SPRETEiJ_G0017893) #22	Tbx21 (MGP_SPRETEiJ_G0017894)	Tbkbp1 (MGP_SPRETEiJ_G0017895) #24	Kpnb1 (MGP_SPRETEiJ_G0017896)	Npepps (MGP_SPRETEiJ_G0017897)	Mrpl45 (MGP_SPRETEiJ_G0017898)	Gpr179 (MGP_SPRETEiJ_G0017899)	Socs7 (MGP_SPRETEiJ_G0017900)	Arhgap23 (MGP_SPRETEiJ_G0017901)	MGP_SPRETEiJ_G0017902	Srcin1 (MGP_SPRETEiJ_G0017903)	Epop (MGP_SPRETEiJ_G0017904)	Mllt6 (MGP_SPRETEiJ_G0017905)	Cisd3 (MGP_SPRETEiJ_G0017906)	Pcgf2 (MGP_SPRETEiJ_G0017907)	Psmb3 (MGP_SPRETEiJ_G0017908)
Ryukyu mouse	MODERN SPECIES	2	Hoxb1 (MGP_CAROLIEiJ_G0017032)	Skap1 (MGP_CAROLIEiJ_G0017033) #13	Snx11 (MGP_CAROLIEiJ_G0017034) #14	Cbx1 (MGP_CAROLIEiJ_G0017035)	MGP_CAROLIEiJ_G0017036	Nfe2l1 (MGP_CAROLIEiJ_G0017037) ##15	Copz2 (MGP_CAROLIEiJ_G0017038) #16	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #18	Prr15l (MGP_CAROLIEiJ_G0017040) ##19	Pnpo (MGP_CAROLIEiJ_G0017041) #20	Sp2 (MGP_CAROLIEiJ_G0017042)	Sp6 (MGP_CAROLIEiJ_G0017043)	MGP_CAROLIEiJ_G0017044	Lrrc46 (MGP_CAROLIEiJ_G0017045)	Mrpl10 (MGP_CAROLIEiJ_G0017046) #21	Osbpl7 (MGP_CAROLIEiJ_G0017047) #22	Tbx21 (MGP_CAROLIEiJ_G0017048)	Tbkbp1 (MGP_CAROLIEiJ_G0017049) #24	Kpnb1 (MGP_CAROLIEiJ_G0017050)	Npepps (MGP_CAROLIEiJ_G0017051)	Mrpl45 (MGP_CAROLIEiJ_G0017052)	Gpr179 (MGP_CAROLIEiJ_G0017053)	Socs7 (MGP_CAROLIEiJ_G0017054)	Arhgap23 (MGP_CAROLIEiJ_G0017055)	MGP_CAROLIEiJ_G0017056	Srcin1 (MGP_CAROLIEiJ_G0017057)	Epop (MGP_CAROLIEiJ_G0017058)	Mllt6 (MGP_CAROLIEiJ_G0017059)	Cisd3 (MGP_CAROLIEiJ_G0017060)	Pcgf2 (MGP_CAROLIEiJ_G0017061)	MGP_CAROLIEiJ_G0017062
Shrew mouse	MODERN SPECIES	5	Hoxb1 (MGP_PahariEiJ_G0018162)	Skap1 (MGP_PahariEiJ_G0018163) #13	Snx11 (MGP_PahariEiJ_G0018164) #14	Cbx1 (MGP_PahariEiJ_G0018165)	MGP_PahariEiJ_G0018166	Nfe2l1 (MGP_PahariEiJ_G0018167) ##15	Copz2 (MGP_PahariEiJ_G0018168) #16	Cdk5rap3 (MGP_PahariEiJ_G0018169) #18	Prr15l (MGP_PahariEiJ_G0018170) ##19	Pnpo (MGP_PahariEiJ_G0018171) #20	Sp2 (MGP_PahariEiJ_G0018172)	Sp6 (MGP_PahariEiJ_G0018173)	Scrn2 (MGP_PahariEiJ_G0018174)	Lrrc46 (MGP_PahariEiJ_G0018175)	Mrpl10 (MGP_PahariEiJ_G0018176) #21	Osbpl7 (MGP_PahariEiJ_G0018177) #22	Tbx21 (MGP_PahariEiJ_G0018178)	Tbkbp1 (MGP_PahariEiJ_G0018179) #24	Npepps (MGP_PahariEiJ_G0018180)	MGP_PahariEiJ_G0018181	Gpr179 (MGP_PahariEiJ_G0018182)	Socs7 (MGP_PahariEiJ_G0018183)	Arhgap23 (MGP_PahariEiJ_G0018184)	MGP_PahariEiJ_G0018185	Srcin1 (MGP_PahariEiJ_G0018186)	Epop (MGP_PahariEiJ_G0018187)	Mllt6 (MGP_PahariEiJ_G0018188)	Cisd3 (MGP_PahariEiJ_G0018189)	Pcgf2 (MGP_PahariEiJ_G0018190)	Psmb3 (MGP_PahariEiJ_G0018191)	Pip4k2b (MGP_PahariEiJ_G0018192)
Rat	MODERN SPECIES	1	Hoxb2 (ENSRNOG00000008365) #10	Hoxb1 (ENSRNOG00000008506)	Skap1 (ENSRNOG00000023881) #13	Snx11 (ENSRNOG00000008642) #14	Cbx1 (ENSRNOG00000008689)	Nfe2l1 (ENSRNOG00000008830) ##15	Copz2 (ENSRNOG00000009225) #16	Cdk5rap3 (ENSRNOG00000048747) #18	Prr15l (ENSRNOG00000049162) ##19	Pnpo (ENSRNOG00000046493) #20	Sp2 (ENSRNOG00000010492)	Sp6 (ENSRNOG00000023551)	Scrn2 (ENSRNOG00000010214)	Lrrc46 (ENSRNOG00000009902)	Mrpl10 (ENSRNOG00000009567) #21	Osbpl7 (ENSRNOG00000009473) #22	Tbx21 (ENSRNOG00000009427)	Tbkbp1 (ENSRNOG00000009370) #24	Kpnb1 (ENSRNOG00000009275)	AABR07030425.1 (ENSRNOG00000056057)	Npepps (ENSRNOG00000023095)	Mrpl45 (ENSRNOG00000010540)	Gpr179 (ENSRNOG00000029245)	Socs7 (ENSRNOG00000059008)	Arhgap23 (ENSRNOG00000022771)	Srcin1 (ENSRNOG00000011475)	Epop (ENSRNOG00000048187)	Mllt6 (ENSRNOG00000053285)	Cisd3 (ENSRNOG00000036894)	Pcgf2 (ENSRNOG00000012705)	Psmb3 (ENSRNOG00000052730)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Hoxb1 (ENSNGAG00000018593)	Skap1 (ENSNGAG00000012571) #13	Snx11 (ENSNGAG00000010446) #14	Cbx1 (ENSNGAG00000006760)	Nfe2l1 (ENSNGAG00000000736) ##15	Copz2 (ENSNGAG00000023713) #16	ENSNGAG00000000747 #18	ENSNGAG00000022529	Prr15l (ENSNGAG00000021432) ##19	Pnpo (ENSNGAG00000020016) #20	Sp2 (ENSNGAG00000017612)	Sp6 (ENSNGAG00000015868)	Scrn2 (ENSNGAG00000023806)	Lrrc46 (ENSNGAG00000022557)	Mrpl10 (ENSNGAG00000022195) #21	Osbpl7 (ENSNGAG00000019382) #22	Tbx21 (ENSNGAG00000002476)	Tbkbp1 (ENSNGAG00000021163) #24	Kpnb1 (ENSNGAG00000017610)	Plekhm1 (ENSNGAG00000013194)	Arhgap27 (ENSNGAG00000021239)	Map3k14 (ENSNGAG00000018057)	Efcab15 (ENSNGAG00000014012)	Fmnl1 (ENSNGAG00000018866)	Hexim2 (ENSNGAG00000008154)	Hexim1 (ENSNGAG00000004671)	Acbd4 (ENSNGAG00000003147)	Plcd3 (ENSNGAG00000022130)	Nmt1 (ENSNGAG00000023149)	Dcakd (ENSNGAG00000021561)	C1ql1 (ENSNGAG00000021352)
Lesser Egyptian jerboa	MODERN SPECIES	56	Hoxb2 (ENSJJAG00000009465) #10	Hoxb1 (ENSJJAG00000001073)	Skap1 (ENSJJAG00000003458) #13	ENSJJAG00000005754 #14	ENSJJAG00000007753	Nfe2l1 (ENSJJAG00000006432) ##15	Copz2 (ENSJJAG00000001025) #16	ENSJJAG00000002511 #18	Prr15l (ENSJJAG00000006478) ##19	Pnpo (ENSJJAG00000023608) #20	Sp2 (ENSJJAG00000003061)	Sp6 (ENSJJAG00000006452)	Scrn2 (ENSJJAG00000023635)	Lrrc46 (ENSJJAG00000010412)	Mrpl10 (ENSJJAG00000004046) #21	Osbpl7 (ENSJJAG00000004477) #22	Tbx21 (ENSJJAG00000000813)	ENSJJAG00000010141 #24	Kpnb1 (ENSJJAG00000010909)	Npepps (ENSJJAG00000005423)	ENSJJAG00000009505	ENSJJAG00000002004	Socs7 (ENSJJAG00000007563)	ENSJJAG00000002946	Srcin1 (ENSJJAG00000000573)	Epop (ENSJJAG00000023234)	Mllt6 (ENSJJAG00000000902)	Cisd3 (ENSJJAG00000023230)	ENSJJAG00000010754	ENSJJAG00000023648	Pip4k2b (ENSJJAG00000023362)
Kangaroo rat	MODERN SPECIES	326	Hoxb6 (ENSDORG00000023877)	Hoxb5 (ENSDORG00000007900) #7	Hoxb4 (ENSDORG00000007899) #8	Hoxb3 (ENSDORG00000007898) #9	Hoxb2 (ENSDORG00000007897) #10	Hoxb1 (ENSDORG00000007896)	Snx11 (ENSDORG00000029078) #14	Cbx1 (ENSDORG00000026399)	Nfe2l1 (ENSDORG00000000715) ##15	Copz2 (ENSDORG00000013441) #16	Prr15l (ENSDORG00000027427) ##19	Pnpo (ENSDORG00000014110) #20	Sp2 (ENSDORG00000014109)	Sp6 (ENSDORG00000026201)	Scrn2 (ENSDORG00000002361)	Osbpl7 (ENSDORG00000002354) #22	Tbx21 (ENSDORG00000013302)	Npepps (ENSDORG00000009627)	Socs7 (ENSDORG00000028979)	ENSDORG00000007713	Srcin1 (ENSDORG00000007714)	Mllt6 (ENSDORG00000016578)	Cisd3 (ENSDORG00000029439)	Pcgf2 (ENSDORG00000016581)	Psmb3 (ENSDORG00000009809)	Pip4k2b (ENSDORG00000009810)	Cwc25 (ENSDORG00000003061)	1700001P01Rik (ENSDORG00000013037)	Rpl23 (ENSDORG00000001372)	Lasp1 (ENSDORG00000025833)	ENSDORG00000028989
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.dc	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874	ENSGT00440000039055
Rabbit	MODERN SPECIES	10	HOXB2 (ENSOCUG00000024951) #10	HOXB1 (ENSOCUG00000001720)	SKAP1 (ENSOCUG00000001717) #13	SNX11 (ENSOCUG00000002309) #14	CBX1 (ENSOCUG00000008021)	NFE2L1 (ENSOCUG00000022298) ##15	COPZ2 (ENSOCUG00000001802) #16	CDK5RAP3 (ENSOCUG00000012325) #18	PRR15L (ENSOCUG00000017489) ##19	PNPO (ENSOCUG00000017484) #20	SP2 (ENSOCUG00000027415)	SP6 (ENSOCUG00000023482)	SCRN2 (ENSOCUG00000009457)	LRRC46 (ENSOCUG00000009453)	MRPL10 (ENSOCUG00000009452) #21	OSBPL7 (ENSOCUG00000009447) #22	TBX21 (ENSOCUG00000012907)	TBKBP1 (ENSOCUG00000014771) #24	KPNB1 (ENSOCUG00000015425)	NPEPPS (ENSOCUG00000015748)	MRPL45 (ENSOCUG00000015690)	GPR179 (ENSOCUG00000015704)	SOCS7 (ENSOCUG00000015724)	ARHGAP23 (ENSOCUG00000011758)	SRCIN1 (ENSOCUG00000005505)	MLLT6 (ENSOCUG00000027604)	CISD3 (ENSOCUG00000022623)	PCGF2 (ENSOCUG00000026783)	PSMB3 (ENSOCUG00000002598)	PIP4K2B (ENSOCUG00000015916)	CWC25 (ENSOCUG00000013906)
Pika	MODERN SPECIES	633									CDK5RAP3 (ENSOPRG00000004107) #18	PNPO (ENSOPRG00000004080) #20	SP2 (ENSOPRG00000004048)	SP6 (ENSOPRG00000004019)	SCRN2 (ENSOPRG00000003992)	LRRC46 (ENSOPRG00000003963)	MRPL10 (ENSOPRG00000003949) #21	OSBPL7 (ENSOPRG00000003904) #22	TBX21 (ENSOPRG00000003888)	TBKBP1 (ENSOPRG00000003843) #24	KPNB1 (ENSOPRG00000003795)	NPEPPS (ENSOPRG00000003735)
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574	ENSGT00940000159730
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574
Suina	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Pig	MODERN SPECIES	3	HOXB2 (ENSSSCG00000017533) #10	HOXB1 (ENSSSCG00000017532)	SKAP1 (ENSSSCG00000017527) #13	SNX11 (ENSSSCG00000017528) #14	CBX1 (ENSSSCG00000017529)	NFE2L1 (ENSSSCG00000017525) ##15	COPZ2 (ENSSSCG00000017526) #16	CDK5RAP3 (ENSSSCG00000017524) #18	PRR15L (ENSSSCG00000054179) ##19	PNPO (ENSSSCG00000032782) #20	SP2 (ENSSSCG00000017516)	SP6 (ENSSSCG00000017522)	SCRN2 (ENSSSCG00000017521)	LRRC46 (ENSSSCG00000017520)	MRPL10 (ENSSSCG00000017519) #21	OSBPL7 (ENSSSCG00000017518) #22	TBX21 (ENSSSCG00000017517)	ENSSSCG00000057498 #24	KPNB1 (ENSSSCG00000017514)	NPEPPS (ENSSSCG00000017513)	MRPL45 (ENSSSCG00000023263)	GPR179 (ENSSSCG00000020884)	SOCS7 (ENSSSCG00000018057)	ARHGAP23 (ENSSSCG00000018058)	ENSSSCG00000045701	ENSSSCG00000046446	SRCIN1 (ENSSSCG00000018056)	EPOP (ENSSSCG00000035677)	MLLT6 (ENSSSCG00000032478)	CISD3 (ENSSSCG00000022187)	PCGF2 (ENSSSCG00000039198)
Chacoan peccary	MODERN SPECIES	145	HOXB2 (ENSCWAG00000022078) #10	HOXB1 (ENSCWAG00000022080)	SKAP1 (ENSCWAG00000000046) #13	SNX11 (ENSCWAG00000000070) #14	CBX1 (ENSCWAG00000000121)	NFE2L1 (ENSCWAG00000000185) ##15	COPZ2 (ENSCWAG00000000341) #16	CDK5RAP3 (ENSCWAG00000000377) #18	PRR15L (ENSCWAG00000000410) ##19	PNPO (ENSCWAG00000000427) #20	SP2 (ENSCWAG00000000474)	SP6 (ENSCWAG00000000502)	SCRN2 (ENSCWAG00000000520)	LRRC46 (ENSCWAG00000000570)	MRPL10 (ENSCWAG00000000589) #21	OSBPL7 (ENSCWAG00000000623) #22	TBX21 (ENSCWAG00000000709)	TBKBP1 (ENSCWAG00000000726) #24	KPNB1 (ENSCWAG00000000755)	NPEPPS (ENSCWAG00000000826)	MRPL45 (ENSCWAG00000000905)	GPR179 (ENSCWAG00000000941)	SOCS7 (ENSCWAG00000001002)	ARHGAP23 (ENSCWAG00000001049)	SRCIN1 (ENSCWAG00000001149)	EPOP (ENSCWAG00000001220)	MLLT6 (ENSCWAG00000001240)	CISD3 (ENSCWAG00000001292)	PCGF2 (ENSCWAG00000001317)	PSMB3 (ENSCWAG00000001345)	PIP4K2B (ENSCWAG00000001369)
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Cetacea	ANCESTRAL SPECIES	5	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Beluga whale	MODERN SPECIES	26	HOXB1 (ENSDLEG00000004807)	SKAP1 (ENSDLEG00000004779) #13	SNX11 (ENSDLEG00000004765) #14	CBX1 (ENSDLEG00000004754)	NFE2L1 (ENSDLEG00000004744) ##15	ENSDLEG00000004734	COPZ2 (ENSDLEG00000004721) #16	CDK5RAP3 (ENSDLEG00000004709) #18	PRR15L (ENSDLEG00000004704) ##19	PNPO (ENSDLEG00000004701) #20	SP2 (ENSDLEG00000004697)	SP6 (ENSDLEG00000004694)	SCRN2 (ENSDLEG00000004688)	ENSDLEG00000004684	MRPL10 (ENSDLEG00000004678) #21	OSBPL7 (ENSDLEG00000004366) #22	TBX21 (ENSDLEG00000004247)	TBKBP1 (ENSDLEG00000004240) #24	KPNB1 (ENSDLEG00000004223)	NPEPPS (ENSDLEG00000004076)	MRPL45 (ENSDLEG00000004037)	GPR179 (ENSDLEG00000004032)	SOCS7 (ENSDLEG00000004014)	ARHGAP23 (ENSDLEG00000003989)	ENSDLEG00000003976	SRCIN1 (ENSDLEG00000003944)	ENSDLEG00000003932	EPOP (ENSDLEG00000003928)	MLLT6 (ENSDLEG00000003908)	CISD3 (ENSDLEG00000003901)	PCGF2 (ENSDLEG00000003889)
Narwhal	MODERN SPECIES	316	HOXB2 (ENSMMNG00015016324) #10	HOXB1 (ENSMMNG00015016356)	SKAP1 (ENSMMNG00015016386) #13	SNX11 (ENSMMNG00015016452) #14	CBX1 (ENSMMNG00015016582)	NFE2L1 (ENSMMNG00015016634) ##15	COPZ2 (ENSMMNG00015016743) #16	CDK5RAP3 (ENSMMNG00015016820) #18	PRR15L (ENSMMNG00015016868) ##19	PNPO (ENSMMNG00015016895) #20	SP2 (ENSMMNG00015016948)	SP6 (ENSMMNG00015016969)	SCRN2 (ENSMMNG00015016985)	LRRC46 (ENSMMNG00015017038)	MRPL10 (ENSMMNG00015017084) #21	OSBPL7 (ENSMMNG00015017115) #22	TBX21 (ENSMMNG00015017166)	TBKBP1 (ENSMMNG00015017190) #24	KPNB1 (ENSMMNG00015017215)	NPEPPS (ENSMMNG00015017277)	MRPL45 (ENSMMNG00015017435)	GPR179 (ENSMMNG00015017480)	SOCS7 (ENSMMNG00015017571)	ARHGAP23 (ENSMMNG00015017676)	SRCIN1 (ENSMMNG00015017795)	ENSMMNG00015017965	EPOP (ENSMMNG00015017989)	MLLT6 (ENSMMNG00015018011)	CISD3 (ENSMMNG00015018042)	PCGF2 (ENSMMNG00015018077)	PSMB3 (ENSMMNG00015018119)
Vaquita	MODERN SPECIES	12	HOXB2 (ENSPSNG00000017708) #10	HOXB1 (ENSPSNG00000017728)	SKAP1 (ENSPSNG00000017760) #13	SNX11 (ENSPSNG00000017889) #14	ENSPSNG00000017984	NFE2L1 (ENSPSNG00000018052) ##15	COPZ2 (ENSPSNG00000018262) #16	CDK5RAP3 (ENSPSNG00000018321) #18	PRR15L (ENSPSNG00000018399) ##19	PNPO (ENSPSNG00000018423) #20	SP2 (ENSPSNG00000018528)	SP6 (ENSPSNG00000018568)	SCRN2 (ENSPSNG00000018588)	LRRC46 (ENSPSNG00000018676)	ENSPSNG00000018757	OSBPL7 (ENSPSNG00000018799) #22	TBX21 (ENSPSNG00000018852)	TBKBP1 (ENSPSNG00000018911) #24	KPNB1 (ENSPSNG00000018946)	NPEPPS (ENSPSNG00000019016)	MRPL45 (ENSPSNG00000019227)	GPR179 (ENSPSNG00000019300)	SOCS7 (ENSPSNG00000019467)	ARHGAP23 (ENSPSNG00000019589)	SRCIN1 (ENSPSNG00000019720)	ENSPSNG00000020092	EPOP (ENSPSNG00000020118)	MLLT6 (ENSPSNG00000020138)	CISD3 (ENSPSNG00000020167)	PCGF2 (ENSPSNG00000020192)	PSMB3 (ENSPSNG00000020246)
Dolphin	MODERN SPECIES	6789										PNPO (ENSTTRG00000012493) #20	SP2 (ENSTTRG00000012483)	SP6 (ENSTTRG00000012481)	SCRN2 (ENSTTRG00000012472)	LRRC46 (ENSTTRG00000012463)	MRPL10 (ENSTTRG00000012452) #21	OSBPL7 (ENSTTRG00000012411) #22
Sperm whale	MODERN SPECIES	389													SP6 (ENSPCTG00005015038)	LRRC46 (ENSPCTG00005014931)	SCRN2 (ENSPCTG00005014718)	OSBPL7 (ENSPCTG00005014620) #22
Blue whale	MODERN SPECIES	12	SPPL2C (ENSBMSG00010019321)	CRHR1 (ENSBMSG00010019636)	ENSBMSG00010020964	NSF (ENSBMSG00010021007) #30	WNT3 (ENSBMSG00010021104) #31	WNT9B (ENSBMSG00010021124)	GOSR2 (ENSBMSG00010021191)	RPRML (ENSBMSG00010021227)	ENSBMSG00010021232	LYZL6 (ENSBMSG00010021240)	ENSBMSG00010021253	ENSBMSG00010021276	ENSBMSG00010021289	SCRN2 (ENSBMSG00010021305)	LRRC46 (ENSBMSG00010021340)	OSBPL7 (ENSBMSG00010021378) #22	TBX21 (ENSBMSG00010021443)	TBKBP1 (ENSBMSG00010021464) #24	KPNB1 (ENSBMSG00010021489)	NPEPPS (ENSBMSG00010021506)	MRPL45 (ENSBMSG00010021543)	GPR179 (ENSBMSG00010021578)	SOCS7 (ENSBMSG00010021611)	ARHGAP23 (ENSBMSG00010021635)	SRCIN1 (ENSBMSG00010021712)	EPOP (ENSBMSG00010021755)	MLLT6 (ENSBMSG00010021759)	CISD3 (ENSBMSG00010021765)	PCGF2 (ENSBMSG00010021770)	PSMB3 (ENSBMSG00010021775)	PIP4K2B (ENSBMSG00010021781)
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00950000185410	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Percora_a	ANCESTRAL SPECIES	2	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574.e	ENSGT00940000159730
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000159503	ENSGT00940000154688.b.j	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574.e	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Goat	MODERN SPECIES	10	ENSCHIG00000010180	ENSCHIG00000015920 #13	ENSCHIG00000026878 #13	SNX11 (ENSCHIG00000017547) #14	CBX1 (ENSCHIG00000010985)	NFE2L1 (ENSCHIG00000015427) ##15	COPZ2 (ENSCHIG00000026544) #16	CDK5RAP3 (ENSCHIG00000025420) #18	PRR15L (ENSCHIG00000008261) ##19	PNPO (ENSCHIG00000004606) #20	SP2 (ENSCHIG00000018648)	SP6 (ENSCHIG00000009897)	SCRN2 (ENSCHIG00000026802)	LRRC46 (ENSCHIG00000015497)	MRPL10 (ENSCHIG00000027033) #21	OSBPL7 (ENSCHIG00000023060) #22	TBX21 (ENSCHIG00000021993)	TBKBP1 (ENSCHIG00000016860) #24	KPNB1 (ENSCHIG00000014896)	NPEPPS (ENSCHIG00000022782)	MRPL45 (ENSCHIG00000014110)	GPR179 (ENSCHIG00000026098)	SOCS7 (ENSCHIG00000012449)	ARHGAP23 (ENSCHIG00000023996)	SRCIN1 (ENSCHIG00000022297)	ENSCHIG00000019374	EPOP (ENSCHIG00000008501)	MLLT6 (ENSCHIG00000019829)	ENSCHIG00000002051	PCGF2 (ENSCHIG00000018902)	PSMB3 (ENSCHIG00000012081)
Rambouillet Sheep	MODERN SPECIES	2	HOXB2 (ENSOARG00020021907) #10	HOXB1 (ENSOARG00020021886)	SKAP1 (ENSOARG00020021817) #13	SNX11 (ENSOARG00020021783) #14	CBX1 (ENSOARG00020021741)	NFE2L1 (ENSOARG00020021460) ##15	COPZ2 (ENSOARG00020021377) #16	CDK5RAP3 (ENSOARG00020021339) #18	PRR15L (ENSOARG00020021319) ##19	PNPO (ENSOARG00020021017) #20	SP2 (ENSOARG00020020972)	SP6 (ENSOARG00020020944)	SCRN2 (ENSOARG00020020770)	LRRC46 (ENSOARG00020020663)	MRPL10 (ENSOARG00020020614) #21	OSBPL7 (ENSOARG00020020494) #22	TBX21 (ENSOARG00020020433)	TBKBP1 (ENSOARG00020020372) #24	KPNB1 (ENSOARG00020020287)	NPEPPS (ENSOARG00020020009)	MRPL45 (ENSOARG00020019879)	GPR179 (ENSOARG00020019685)	SOCS7 (ENSOARG00020019553)	ARHGAP23 (ENSOARG00020019239)	SRCIN1 (ENSOARG00020018349)	ENSOARG00020018303	ENSOARG00020018283	MLLT6 (ENSOARG00020018035)	ENSOARG00020017987	PSMB3 (ENSOARG00020017862)	PIP4K2B (ENSOARG00020017738)
Bovinae	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00960000190232	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574.e
Bos	ANCESTRAL SPECIES	1	ENSGT00940000159503	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.i	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590.e.b	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00960000190232	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574.e
Bos_a	ANCESTRAL SPECIES		ENSGT00940000159503	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.i	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590.e.b	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00960000190232	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574.e
Wild yak	MODERN SPECIES	953												SP6 (ENSBMUG00000000772)	SCRN2 (ENSBMUG00000000797)	LRRC46 (ENSBMUG00000000816)	MRPL10 (ENSBMUG00000000829) #21	OSBPL7 (ENSBMUG00000000874) #22	TBX21 (ENSBMUG00000000904)	TBKBP1 (ENSBMUG00000000913) #24	KPNB1 (ENSBMUG00000000951)	NPEPPS (ENSBMUG00000001034)	MRPL45 (ENSBMUG00000001074)	ENSBMUG00000001086	GPR179 (ENSBMUG00000001100)	SOCS7 (ENSBMUG00000001131)	ARHGAP23 (ENSBMUG00000001176)	SRCIN1 (ENSBMUG00000001263)	ENSBMUG00000001292	EPOP (ENSBMUG00000001299)	MLLT6 (ENSBMUG00000001313)	CISD3 (ENSBMUG00000001326)	PCGF2 (ENSBMUG00000001349)
Domestic yak	MODERN SPECIES	10	HOXB2 (ENSBGRG00000021425) #10	HOXB1 (ENSBGRG00000021404)	SKAP1 (ENSBGRG00000021202) #13	SNX11 (ENSBGRG00000021141) #14	CBX1 (ENSBGRG00000021062)	NFE2L1 (ENSBGRG00000020783) ##15	COPZ2 (ENSBGRG00000020574) #16	CDK5RAP3 (ENSBGRG00000020283) #18	ENSBGRG00000020194 ##19	PNPO (ENSBGRG00000019898) #20	ENSBGRG00000019774	SP6 (ENSBGRG00000019744)	SCRN2 (ENSBGRG00000019672)	LRRC46 (ENSBGRG00000019490)	MRPL10 (ENSBGRG00000019422) #21	OSBPL7 (ENSBGRG00000019260) #22	TBX21 (ENSBGRG00000019171)	TBKBP1 (ENSBGRG00000019067) #24	KPNB1 (ENSBGRG00000018571)	NPEPPS (ENSBGRG00000018276)	ENSBGRG00000018222	MRPL45 (ENSBGRG00000017975)	ENSBGRG00000017816	SOCS7 (ENSBGRG00000017476)	ARHGAP23 (ENSBGRG00000017050)	ENSBGRG00000016987	SRCIN1 (ENSBGRG00000015645)	EPOP (ENSBGRG00000015572)	MLLT6 (ENSBGRG00000015018)	CISD3 (ENSBGRG00000014924)	PCGF2 (ENSBGRG00000014863)
Bos_b	ANCESTRAL SPECIES	15	ENSGT00940000159503	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b.i	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590.e.b	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00960000190232	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574.e	ENSGT00940000159730
Cow	MODERN SPECIES	10	HOXB2 (ENSBTAG00000009979) #10	HOXB1 (ENSBTAG00000007603)	SKAP1 (ENSBTAG00000000641) #13	SNX11 (ENSBTAG00000020321) #14	CBX1 (ENSBTAG00000002949)	NFE2L1 (ENSBTAG00000013653) ##15	COPZ2 (ENSBTAG00000039954) #16	CDK5RAP3 (ENSBTAG00000014202) #18	PRR15L (ENSBTAG00000012249) ##19	PNPO (ENSBTAG00000012259) #20	SP2 (ENSBTAG00000013740)	SP6 (ENSBTAG00000001825)	SCRN2 (ENSBTAG00000001828)	LRRC46 (ENSBTAG00000001830)	MRPL10 (ENSBTAG00000001832) #21	OSBPL7 (ENSBTAG00000013523) #22	TBX21 (ENSBTAG00000014199)	TBKBP1 (ENSBTAG00000011280) #24	KPNB1 (ENSBTAG00000006586)	NPEPPS (ENSBTAG00000011435)	MRPL45 (ENSBTAG00000025001)	ENSBTAG00000049522	GPR179 (ENSBTAG00000001804)	SOCS7 (ENSBTAG00000008535)	ARHGAP23 (ENSBTAG00000016911)	SRCIN1 (ENSBTAG00000013469)	ENSBTAG00000053767	EPOP (ENSBTAG00000048067)	MLLT6 (ENSBTAG00000011532)	CISD3 (ENSBTAG00000046569)	PCGF2 (ENSBTAG00000011539)
Hybrid Bos Indicus	MODERN SPECIES	10	HOXB1 (ENSBIXG00005029618)	ENSBIXG00005029636	SKAP1 (ENSBIXG00005029657) #13	SNX11 (ENSBIXG00005029679) #14	CBX1 (ENSBIXG00005029691)	NFE2L1 (ENSBIXG00005029748) ##15	COPZ2 (ENSBIXG00005029862) #16	CDK5RAP3 (ENSBIXG00005029886) #18	PRR15L (ENSBIXG00005029905) ##19	PNPO (ENSBIXG00005029918) #20	ENSBIXG00005029934	SP6 (ENSBIXG00005029948)	SCRN2 (ENSBIXG00005029976)	LRRC46 (ENSBIXG00005030008)	MRPL10 (ENSBIXG00005030023) #21	OSBPL7 (ENSBIXG00005030039) #22	TBX21 (ENSBIXG00005030084)	TBKBP1 (ENSBIXG00005030097) #24	KPNB1 (ENSBIXG00005030131)	NPEPPS (ENSBIXG00005030159)	MRPL45 (ENSBIXG00005030219)	ENSBIXG00005030228	GPR179 (ENSBIXG00005030235)	SOCS7 (ENSBIXG00005030269)	ARHGAP23 (ENSBIXG00005030331)	SRCIN1 (ENSBIXG00005030456)	EPOP (ENSBIXG00005030515)	MLLT6 (ENSBIXG00005030533)	CISD3 (ENSBIXG00005030560)	PIP4K2B (ENSBIXG00005030579)	PSMB3 (ENSBIXG00005030631)
American bison	MODERN SPECIES	3101	HOXB2 (ENSBBBG00000021598) #10	HOXB1 (ENSBBBG00000021601)	SKAP1 (ENSBBBG00000021634) #13	SNX11 (ENSBBBG00000021652) #14	ENSBBBG00000021675	NFE2L1 (ENSBBBG00000021740) ##15	COPZ2 (ENSBBBG00000021782) #16	CDK5RAP3 (ENSBBBG00000021808) #18	PRR15L (ENSBBBG00000021809) ##19	PNPO (ENSBBBG00000021862) #20	SP2 (ENSBBBG00000021914)	SP6 (ENSBBBG00000021924)	SCRN2 (ENSBBBG00000021958)	LRRC46 (ENSBBBG00000021972)	MRPL10 (ENSBBBG00000021983) #21	OSBPL7 (ENSBBBG00000022056) #22	TBX21 (ENSBBBG00000005826)	ENSBBBG00000022076 #24	KPNB1 (ENSBBBG00000022131)	NPEPPS (ENSBBBG00000022236)	ENSBBBG00000022252	MRPL45 (ENSBBBG00000022294)	ENSBBBG00000005882	SOCS7 (ENSBBBG00000005889)	ENSBBBG00000005896	ENSBBBG00000022356	SRCIN1 (ENSBBBG00000022427)	MLLT6 (ENSBBBG00000008844)	CISD3 (ENSBBBG00000022480)	PCGF2 (ENSBBBG00000022514)	PSMB3 (ENSBBBG00000022529)
Siberian musk deer	MODERN SPECIES	1210	HOXB1 (ENSMMSG00000024533)	ENSMMSG00000024535	SKAP1 (ENSMMSG00000024536) #13	SNX11 (ENSMMSG00000024538) #14	CBX1 (ENSMMSG00000024540)	NFE2L1 (ENSMMSG00000024541) ##15	COPZ2 (ENSMMSG00000024546) #16	CDK5RAP3 (ENSMMSG00000024548) #18	PRR15L (ENSMMSG00000024549) ##19	PNPO (ENSMMSG00000024550) #20	SP2 (ENSMMSG00000024551)	SP6 (ENSMMSG00000018224)	SCRN2 (ENSMMSG00000018238)	LRRC46 (ENSMMSG00000018351)	MRPL10 (ENSMMSG00000018396) #21	OSBPL7 (ENSMMSG00000018422) #22	ENSMMSG00000018451	TBX21 (ENSMMSG00000018475)	TBKBP1 (ENSMMSG00000018512) #24	KPNB1 (ENSMMSG00000018546)	NPEPPS (ENSMMSG00000018632)	ENSMMSG00000018805	MRPL45 (ENSMMSG00000018849)	GPR179 (ENSMMSG00000018906)	SOCS7 (ENSMMSG00000019056)	ARHGAP23 (ENSMMSG00000019156)	SRCIN1 (ENSMMSG00000019355)	ENSMMSG00000020098	EPOP (ENSMMSG00000020116)	MLLT6 (ENSMMSG00000020128)	CISD3 (ENSMMSG00000020156)
Yarkand deer	MODERN SPECIES	28	SKAP1 (ENSCHYG00000004692) #13	ENSCHYG00000004720	SNX11 (ENSCHYG00000004737) #14	CBX1 (ENSCHYG00000004750)	NFE2L1 (ENSCHYG00000004781) ##15	COPZ2 (ENSCHYG00000004829) #16	ENSCHYG00000004851	CDK5RAP3 (ENSCHYG00000000101) #18	PRR15L (ENSCHYG00000000125) ##19	PNPO (ENSCHYG00000000157) #20	SP2 (ENSCHYG00000000198)	SP6 (ENSCHYG00000000221)	SCRN2 (ENSCHYG00000000227)	LRRC46 (ENSCHYG00000000251)	MRPL10 (ENSCHYG00000000265) #21	OSBPL7 (ENSCHYG00000000286) #22	TBX21 (ENSCHYG00000000318)	TBKBP1 (ENSCHYG00000000333) #24	KPNB1 (ENSCHYG00000000360)	ENSCHYG00000000411	NPEPPS (ENSCHYG00000000456)	MRPL45 (ENSCHYG00000000557)	GPR179 (ENSCHYG00000000586)	SOCS7 (ENSCHYG00000000633)	ARHGAP23 (ENSCHYG00000000727)	ENSCHYG00000000749	SRCIN1 (ENSCHYG00000000846)	ENSCHYG00000001051	EPOP (ENSCHYG00000001065)	MLLT6 (ENSCHYG00000001086)	CISD3 (ENSCHYG00000001120)
Camelidae	ANCESTRAL SPECIES	60	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.a.a	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00550000076427	ENSGT00390000004574	ENSGT00940000159730
Arabian camel	MODERN SPECIES	7	HOXB2 (ENSCDRG00005018121) #10	HOXB1 (ENSCDRG00005018147)	SKAP1 (ENSCDRG00005018166) #13	SNX11 (ENSCDRG00005018232) #14	CBX1 (ENSCDRG00005018330)	NFE2L1 (ENSCDRG00005018357) ##15	ENSCDRG00005018515	COPZ2 (ENSCDRG00005018538) #16	CDK5RAP3 (ENSCDRG00005018564) #18	PRR15L (ENSCDRG00005018636) ##19	SP2 (ENSCDRG00005018756)	SP6 (ENSCDRG00005018791)	SCRN2 (ENSCDRG00005018805)	LRRC46 (ENSCDRG00005018865)	MRPL10 (ENSCDRG00005018906) #21	OSBPL7 (ENSCDRG00005018943) #22	TBX21 (ENSCDRG00005018980)	TBKBP1 (ENSCDRG00005018994) #24	KPNB1 (ENSCDRG00005019017)	NPEPPS (ENSCDRG00005019119)	MRPL45 (ENSCDRG00005019287)	GPR179 (ENSCDRG00005019342)	SOCS7 (ENSCDRG00005019385)	ENSCDRG00005019433	SRCIN1 (ENSCDRG00005019469)	ENSCDRG00005019591	ENSCDRG00005019601	EPOP (ENSCDRG00005019614)	MLLT6 (ENSCDRG00005019627)	ENSCDRG00005019767	CISD3 (ENSCDRG00005019777)
Alpaca	MODERN SPECIES	1000																ENSVPAG00000011796 #22
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Ursidae	ANCESTRAL SPECIES	18	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Ursus	ANCESTRAL SPECIES	67	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00390000005809.c.b	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b
Polar bear	MODERN SPECIES	94	HOXB5 (ENSUMAG00000015806) #7	HOXB1 (ENSUMAG00000015821)	SKAP1 (ENSUMAG00000015835) #13	SNX11 (ENSUMAG00000015873) #14	CBX1 (ENSUMAG00000015878)	NFE2L1 (ENSUMAG00000015890) ##15	ENSUMAG00000015942 #16	ENSUMAG00000015965 #18	ENSUMAG00000015972 #18	PRR15L (ENSUMAG00000015982) ##19	PNPO (ENSUMAG00000015992) #20	SP2 (ENSUMAG00000015996)	SCRN2 (ENSUMAG00000016006)	LRRC46 (ENSUMAG00000016015)	MRPL10 (ENSUMAG00000016024) #21	OSBPL7 (ENSUMAG00000016080) #22	ENSUMAG00000016418	ENSUMAG00000016425 #24	KPNB1 (ENSUMAG00000016471)	ENSUMAG00000016745	NPEPPS (ENSUMAG00000016765)	MRPL45 (ENSUMAG00000016869)	ENSUMAG00000016874	SOCS7 (ENSUMAG00000016879)	ARHGAP23 (ENSUMAG00000016886)
American black bear	MODERN SPECIES	3245																OSBPL7 (ENSUAMG00000001797) #22
Giant Panda	MODERN SPECIES	4	HOXB2 (ENSAMEG00000030987) #10	HOXB1 (ENSAMEG00000004935)	SKAP1 (ENSAMEG00000004919) #13	SNX11 (ENSAMEG00000004898) #14	CBX1 (ENSAMEG00000004890)	NFE2L1 (ENSAMEG00000004881) ##15	COPZ2 (ENSAMEG00000004850) #16	ENSAMEG00000030152	CDK5RAP3 (ENSAMEG00000004818) #18	PRR15L (ENSAMEG00000025744) ##19	PNPO (ENSAMEG00000004786) #20	SP2 (ENSAMEG00000004772)	SCRN2 (ENSAMEG00000004751)	LRRC46 (ENSAMEG00000004734)	MRPL10 (ENSAMEG00000004722) #21	OSBPL7 (ENSAMEG00000004670) #22	TBX21 (ENSAMEG00000004661)	TBKBP1 (ENSAMEG00000004659) #24	KPNB1 (ENSAMEG00000004613)	ENSAMEG00000004523	ENSAMEG00000004511	ENSAMEG00000029558	SOCS7 (ENSAMEG00000004494)	ARHGAP23 (ENSAMEG00000024032)	SRCIN1 (ENSAMEG00000004436)	ENSAMEG00000004480	MLLT6 (ENSAMEG00000004398)	CISD3 (ENSAMEG00000004397)	PCGF2 (ENSAMEG00000004383)	ENSAMEG00000004363	PIP4K2B (ENSAMEG00000004319)
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00860000135964	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
American mink	MODERN SPECIES	92	ENSNVIG00000006009	SKAP1 (ENSNVIG00000005974) #13	SNX11 (ENSNVIG00000005959) #14	CBX1 (ENSNVIG00000005946)	NFE2L1 (ENSNVIG00000005857) ##15	ENSNVIG00000005842	COPZ2 (ENSNVIG00000005837) #16	CDK5RAP3 (ENSNVIG00000005742) #18	PR15L (ENSNVIG00000005731) ##19	PNPO (ENSNVIG00000005692) #20	SP2 (ENSNVIG00000005673)	SP6 (ENSNVIG00000005667)	SCRN2 (ENSNVIG00000005641)	LRRC46 (ENSNVIG00000005619)	RM10 (ENSNVIG00000005608) #21	OSBPL7 (ENSNVIG00000005460) #22	TBX21 (ENSNVIG00000005442)	ENSNVIG00000005426 #24	KPNB1 (ENSNVIG00000005359)	NPEPPS (ENSNVIG00000005313)	MRPL45 (ENSNVIG00000005287)	GPR179 (ENSNVIG00000005217)	SOCS7 (ENSNVIG00000005194)	ARHGAP23 (ENSNVIG00000005156)	ENSNVIG00000005143	ENSNVIG00000005132	SRCIN1 (ENSNVIG00000004933)	EPOP (ENSNVIG00000004907)	MLLT6 (ENSNVIG00000004869)	PCGF2 (ENSNVIG00000004845)	PSMB3 (ENSNVIG00000004836)
Ferret	MODERN SPECIES	270	HOXB2 (ENSMPUG00000015309) #10	HOXB1 (ENSMPUG00000015307)	SKAP1 (ENSMPUG00000015305) #13	SNX11 (ENSMPUG00000015303) #14	CBX1 (ENSMPUG00000015302)	NFE2L1 (ENSMPUG00000015301) ##15	COPZ2 (ENSMPUG00000015292) #16	CDK5RAP3 (ENSMPUG00000015291) #18	PRR15L (ENSMPUG00000020087) ##19	PNPO (ENSMPUG00000015290) #20	SP2 (ENSMPUG00000015289)	SP6 (ENSMPUG00000020086)	SCRN2 (ENSMPUG00000015288)	LRRC46 (ENSMPUG00000015287)	MRPL10 (ENSMPUG00000015278) #21	OSBPL7 (ENSMPUG00000015276) #22	ENSMPUG00000015275	ENSMPUG00000015273	TBX21 (ENSMPUG00000015272)	TBKBP1 (ENSMPUG00000015271) #24	KPNB1 (ENSMPUG00000015220)	NPEPPS (ENSMPUG00000015219)	MRPL45 (ENSMPUG00000015218)	GPR179 (ENSMPUG00000015211)	SOCS7 (ENSMPUG00000015192)	ARHGAP23 (ENSMPUG00000015145)	SRCIN1 (ENSMPUG00000015140)	EPOP (ENSMPUG00000015138)	MLLT6 (ENSMPUG00000015135)	CISD3 (ENSMPUG00000015129)	PCGF2 (ENSMPUG00000015084)
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Dog	MODERN SPECIES	37	HOXB1 (ENSCAFG00845017096)	SKAP1 (ENSCAFG00845016959) #13	SNX11 (ENSCAFG00845016720) #14	CBX1 (ENSCAFG00845016596)	NFE2L1 (ENSCAFG00845016388) ##15	COPZ2 (ENSCAFG00845016156) #16	CDK5RAP3 (ENSCAFG00845016051) #18	ENSCAFG00845016000	PRR15L (ENSCAFG00845015978) ##19	PNPO (ENSCAFG00845015876) #20	SP2 (ENSCAFG00845015786)	SP6 (ENSCAFG00845015746)	SCRN2 (ENSCAFG00845015686)	LRRC46 (ENSCAFG00845015603)	MRPL10 (ENSCAFG00845015539) #21	OSBPL7 (ENSCAFG00845015415) #22	TBX21 (ENSCAFG00845015330)	TBKBP1 (ENSCAFG00845015281) #24	KPNB1 (ENSCAFG00845015226)	NPEPPS (ENSCAFG00845014931)	ENSCAFG00845014840	GPR179 (ENSCAFG00845014777)	SOCS7 (ENSCAFG00845014686)	ARHGAP23 (ENSCAFG00845014513)	SRCIN1 (ENSCAFG00845014295)	EPOP (ENSCAFG00845014204)	MLLT6 (ENSCAFG00845014142)	CISD3 (ENSCAFG00845014110)	PCGF2 (ENSCAFG00845014092)	PSMB3 (ENSCAFG00845014069)	PIP4K2B (ENSCAFG00845014030)
Dingo	MODERN SPECIES	150	HOXB2 (ENSCAFG00020023293) #10	HOXB1 (ENSCAFG00020023290)	SKAP1 (ENSCAFG00020023287) #13	SNX11 (ENSCAFG00020023282) #14	CBX1 (ENSCAFG00020023275)	NFE2L1 (ENSCAFG00020023270) ##15	COPZ2 (ENSCAFG00020023263) #16	CDK5RAP3 (ENSCAFG00020023258) #18	PRR15L (ENSCAFG00020023256) ##19	PNPO (ENSCAFG00020023249) #20	SP2 (ENSCAFG00020023246)	SP6 (ENSCAFG00020023243)	SCRN2 (ENSCAFG00020023238)	LRRC46 (ENSCAFG00020023236)	MRPL10 (ENSCAFG00020023232) #21	OSBPL7 (ENSCAFG00020023225) #22	TBX21 (ENSCAFG00020023221)	TBKBP1 (ENSCAFG00020023210) #24	KPNB1 (ENSCAFG00020023205)	NPEPPS (ENSCAFG00020023203)	ENSCAFG00020023199	MRPL45 (ENSCAFG00020023186)	GPR179 (ENSCAFG00020023180)	SOCS7 (ENSCAFG00020023179)	ARHGAP23 (ENSCAFG00020023111)	ENSCAFG00020023090	ENSCAFG00020023078	EPOP (ENSCAFG00020023075)	MLLT6 (ENSCAFG00020023029)	CISD3 (ENSCAFG00020023025)	PCGF2 (ENSCAFG00020023023)
Red fox	MODERN SPECIES	20	HOXB2 (ENSVVUG00000003328) #10	HOXB1 (ENSVVUG00000003325)	SKAP1 (ENSVVUG00000003297) #13	SNX11 (ENSVVUG00000003276) #14	ENSVVUG00000003272	NFE2L1 (ENSVVUG00000003262) ##15	COPZ2 (ENSVVUG00000003249) #16	CDK5RAP3 (ENSVVUG00000003227) #18	PRR15L (ENSVVUG00000003218) ##19	PNPO (ENSVVUG00000003178) #20	SP2 (ENSVVUG00000003171)	SP6 (ENSVVUG00000003167)	SCRN2 (ENSVVUG00000003154)	LRRC46 (ENSVVUG00000003146)	MRPL10 (ENSVVUG00000003141) #21	ENSVVUG00000003127 #22	TBX21 (ENSVVUG00000003106)	ENSVVUG00000003100 #24	KPNB1 (ENSVVUG00000003085)	NPEPPS (ENSVVUG00000003061)	MRPL45 (ENSVVUG00000003030)	GPR179 (ENSVVUG00000002981)	SOCS7 (ENSVVUG00000002941)	ARHGAP23 (ENSVVUG00000002610)	SRCIN1 (ENSVVUG00000002377)	EPOP (ENSVVUG00000002338)	MLLT6 (ENSVVUG00000002319)	CISD3 (ENSVVUG00000002294)	PCGF2 (ENSVVUG00000002282)	ENSVVUG00000002204	PIP4K2B (ENSVVUG00000002192)
Felidae	ANCESTRAL SPECIES	8	ENSGT00390000013771.p	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.i	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00860000135964	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
Panthera	ANCESTRAL SPECIES	14	ENSGT00390000013771.p	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00950000185410	ENSGT00390000004405.b #16	ENSGT00940000154534.a ##19	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.i.a.a	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h
Tiger	MODERN SPECIES	230	HOXB4 (ENSPTIG00000014995) #8	HOXB2 (ENSPTIG00000015306) #10	HOXB1 (ENSPTIG00000015694)	SKAP1 (ENSPTIG00000016493) #13	SNX11 (ENSPTIG00000018316) #14	CBX1 (ENSPTIG00000020896)	NFE2L1 (ENSPTIG00000021715) ##15	ENSPTIG00000007047	COPZ2 (ENSPTIG00000007508) #16	CDK5RAP3 (ENSPTIG00000009086) #18	PNPO (ENSPTIG00000012157) #20	SP2 (ENSPTIG00000014873)	SCRN2 (ENSPTIG00000016232)	LRRC46 (ENSPTIG00000018466)	MRPL10 (ENSPTIG00000018968) #21	ENSPTIG00000019388 #22	TBX21 (ENSPTIG00000001553)	ENSPTIG00000005274 #24	KPNB1 (ENSPTIG00000006870)	NPEPPS (ENSPTIG00000010447)	MRPL45 (ENSPTIG00000013013)	SOCS7 (ENSPTIG00000017283)	ARHGAP23 (ENSPTIG00000018889)	SRCIN1 (ENSPTIG00000021759)	MLLT6 (ENSPTIG00000007153)	CISD3 (ENSPTIG00000012358)	PCGF2 (ENSPTIG00000013278)	ENSPTIG00000017869	PIP4K2B (ENSPTIG00000018211)	CWC25 (ENSPTIG00000020264)	C17orf98 (ENSPTIG00000020751)
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000159503	ENSGT00390000013771.p	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00940000154534.a ##19	ENSGT00390000000713 #18	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679.i.a.a	ENSGT00390000012679.i.b	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00930000153020	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730
leopard	MODERN SPECIES	67	HOXB1 (ENSPPRG00000017656)	ENSPPRG00000017115	ENSPPRG00000016613	SKAP1 (ENSPPRG00000015336) #13	SNX11 (ENSPPRG00000012061) #14	CBX1 (ENSPPRG00000009475)	NFE2L1 (ENSPPRG00000009101) ##15	COPZ2 (ENSPPRG00000006801) #16	CDK5RAP3 (ENSPPRG00000006376) #18	PNPO (ENSPPRG00000005037) #20	SP2 (ENSPPRG00000003332)	SP6 (ENSPPRG00000016089)	SCRN2 (ENSPPRG00000002730)	LRRC46 (ENSPPRG00000001915)	MRPL10 (ENSPPRG00000001188) #21	ENSPPRG00000001011 #22	TBX21 (ENSPPRG00000000491)	TBKBP1 (ENSPPRG00000000101) #24	KPNB1 (ENSPPRG00000022879)	NPEPPS (ENSPPRG00000020677)	ENSPPRG00000014693	GPR179 (ENSPPRG00000013909)	SOCS7 (ENSPPRG00000012918)	ARHGAP23 (ENSPPRG00000012371)	ENSPPRG00000011407	SRCIN1 (ENSPPRG00000011073)	ENSPPRG00000015449	EPOP (ENSPPRG00000015423)	MLLT6 (ENSPPRG00000008190)	CISD3 (ENSPPRG00000006700)	PCGF2 (ENSPPRG00000006569)
lion	MODERN SPECIES	14	HOXB2 (ENSPLOG00000021733) #10	HOXB1 (ENSPLOG00000021742)	ENSPLOG00000021761	SKAP1 (ENSPLOG00000021790) #13	SNX11 (ENSPLOG00000021872) #14	CBX1 (ENSPLOG00000021907)	NFE2L1 (ENSPLOG00000021931) ##15	COPZ2 (ENSPLOG00000021972) #16	CDK5RAP3 (ENSPLOG00000022033) #18	PRR15L (ENSPLOG00000022093) ##19	SP2 (ENSPLOG00000022101)	SP6 (ENSPLOG00000022115)	SCRN2 (ENSPLOG00000022130)	LRRC46 (ENSPLOG00000005433)	MRPL10 (ENSPLOG00000005459) #21	OSBPL7 (ENSPLOG00000005563) #22	TBX21 (ENSPLOG00000005640)	TBKBP1 (ENSPLOG00000005658) #24	KPNB1 (ENSPLOG00000005771)	NPEPPS (ENSPLOG00000005888)	MRPL45 (ENSPLOG00000006010)	GPR179 (ENSPLOG00000006047)	SOCS7 (ENSPLOG00000006096)	ARHGAP23 (ENSPLOG00000006163)	SRCIN1 (ENSPLOG00000006464)	EPOP (ENSPLOG00000006763)	MLLT6 (ENSPLOG00000006793)	CISD3 (ENSPLOG00000006847)	PCGF2 (ENSPLOG00000006878)	ENSPLOG00000006899	PIP4K2B (ENSPLOG00000006923)
Cat	MODERN SPECIES	245	HOXB1 (ENSFCAG00000028151)	ENSFCAG00000034133	SKAP1 (ENSFCAG00000004784) #13	SNX11 (ENSFCAG00000009371) #14	CBX1 (ENSFCAG00000006056)	NFE2L1 (ENSFCAG00000009369) ##15	COPZ2 (ENSFCAG00000034233) #16	CDK5RAP3 (ENSFCAG00000009367) #18	PRR15L (ENSFCAG00000009366) ##19	PNPO (ENSFCAG00000001300) #20	SP2 (ENSFCAG00000009365)	SP6 (ENSFCAG00000009363)	SCRN2 (ENSFCAG00000009362)	LRRC46 (ENSFCAG00000045119)	MRPL10 (ENSFCAG00000009360) #21	OSBPL7 (ENSFCAG00000009359) #22	TBX21 (ENSFCAG00000010607)	TBKBP1 (ENSFCAG00000010605) #24	KPNB1 (ENSFCAG00000023994)	NPEPPS (ENSFCAG00000027844)	MRPL45 (ENSFCAG00000005808)	GPR179 (ENSFCAG00000005812)	SOCS7 (ENSFCAG00000005815)	ARHGAP23 (ENSFCAG00000005816)	SRCIN1 (ENSFCAG00000005817)	ENSFCAG00000048827	EPOP (ENSFCAG00000036017)	MLLT6 (ENSFCAG00000014494)	PCGF2 (ENSFCAG00000014496)	PSMB3 (ENSFCAG00000014497)	PIP4K2B (ENSFCAG00000028357)
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Equus	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Horse	MODERN SPECIES	2	HOXB3 (ENSECAG00000002707) #9	HOXB2 (ENSECAG00000012423) #10	HOXB1 (ENSECAG00000011628)	SKAP1 (ENSECAG00000010544) #13	SNX11 (ENSECAG00000008117) #14	CBX1 (ENSECAG00000008048)	NFE2L1 (ENSECAG00000007777) ##15	COPZ2 (ENSECAG00000024471) #16	CDK5RAP3 (ENSECAG00000018688) #18	PRR15L (ENSECAG00000002658) ##19	PNPO (ENSECAG00000014995) #20	SP2 (ENSECAG00000012859)	SP6 (ENSECAG00000012853)	SCRN2 (ENSECAG00000009826)	LRRC46 (ENSECAG00000007543)	OSBPL7 (ENSECAG00000019067) #22	TBX21 (ENSECAG00000018160)	TBKBP1 (ENSECAG00000016107) #24	KPNB1 (ENSECAG00000014560)	NPEPPS (ENSECAG00000007392)	MRPL45 (ENSECAG00000000590)	GPR179 (ENSECAG00000021843)	SOCS7 (ENSECAG00000021699)	ARHGAP23 (ENSECAG00000031942)	SRCIN1 (ENSECAG00000014219)	EPOP (ENSECAG00000036519)	MLLT6 (ENSECAG00000012082)	CISD3 (ENSECAG00000011982)	PCGF2 (ENSECAG00000007453)	PSMB3 (ENSECAG00000060004)	PIP4K2B (ENSECAG00000022246)
Donkey	MODERN SPECIES	4	HOXB2 (ENSEASG00005000585) #10	HOXB1 (ENSEASG00005000594)	SKAP1 (ENSEASG00005000601) #13	SNX11 (ENSEASG00005000605) #14	CBX1 (ENSEASG00005000607)	NFE2L1 (ENSEASG00005000634) ##15	COPZ2 (ENSEASG00005000641) #16	CDK5RAP3 (ENSEASG00005000658) #18	PRR15L (ENSEASG00005000660) ##19	PNPO (ENSEASG00005028794) #20	SP2 (ENSEASG00005000667)	SP6 (ENSEASG00005036407)	SCRN2 (ENSEASG00005000671)	LRRC46 (ENSEASG00005000676)	MRPL10 (ENSEASG00005027403) #21	OSBPL7 (ENSEASG00005000733) #22	TBX21 (ENSEASG00005000739)	TBKBP1 (ENSEASG00005000756) #24	KPNB1 (ENSEASG00005000805)	ENSEASG00005000896	ENSEASG00005001461	ENSEASG00005001474	SOCS7 (ENSEASG00005001492)	ARHGAP23 (ENSEASG00005001497)	SRCIN1 (ENSEASG00005001556)	EPOP (ENSEASG00005029689)	MLLT6 (ENSEASG00005001776)	ENSEASG00005001858	PSMB3 (ENSEASG00005030720)	PIP4K2B (ENSEASG00005001868)	CWC25 (ENSEASG00005001871)
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d.b	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820.h	ENSGT00940000159874
Greater horseshoe bat	MODERN SPECIES	13	HOXB2 (ENSRFEG00010021859) #10	HOXB1 (ENSRFEG00010021864)	SKAP1 (ENSRFEG00010021866) #13	SNX11 (ENSRFEG00010021879) #14	CBX1 (ENSRFEG00010021893)	NFE2L1 (ENSRFEG00010021900) ##15	COPZ2 (ENSRFEG00010021918) #16	CDK5RAP3 (ENSRFEG00010021928) #18	PRR15L (ENSRFEG00010021936) ##19	PNPO (ENSRFEG00010021942) #20	SP2 (ENSRFEG00010021950)	SP6 (ENSRFEG00010021957)	SCRN2 (ENSRFEG00010021961)	LRRC46 (ENSRFEG00010008197)	MRPL10 (ENSRFEG00010008230) #21	OSBPL7 (ENSRFEG00010008272) #22	TBX21 (ENSRFEG00010008382)	TBKBP1 (ENSRFEG00010008412) #24	KPNB1 (ENSRFEG00010008460)	NPEPPS (ENSRFEG00010008553)	MRPL45 (ENSRFEG00010008623)	GPR179 (ENSRFEG00010008688)	SOCS7 (ENSRFEG00010008940)	ARHGAP23 (ENSRFEG00010009067)	SRCIN1 (ENSRFEG00010009277)	EPOP (ENSRFEG00010009672)	MLLT6 (ENSRFEG00010009688)	CISD3 (ENSRFEG00010009743)	PCGF2 (ENSRFEG00010009781)	PSMB3 (ENSRFEG00010009823)	PIP4K2B (ENSRFEG00010009891)
Microbat	MODERN SPECIES	1191	ENSMLUG00000014513 #7	ENSMLUG00000027291	HOXB3 (ENSMLUG00000008445) #9	HOXB1 (ENSMLUG00000008429)	SKAP1 (ENSMLUG00000005037) #13	SNX11 (ENSMLUG00000005033) #14	CBX1 (ENSMLUG00000005030)	NFE2L1 (ENSMLUG00000005024) ##15	CDK5RAP3 (ENSMLUG00000005014) #18	PRR15L (ENSMLUG00000005012) ##19	PNPO (ENSMLUG00000005003) #20	SP2 (ENSMLUG00000005000)	SCRN2 (ENSMLUG00000006417)	LRRC46 (ENSMLUG00000006409)	MRPL10 (ENSMLUG00000006405) #21	OSBPL7 (ENSMLUG00000006392) #22	TBX21 (ENSMLUG00000014542)	TBKBP1 (ENSMLUG00000014537) #24	KPNB1 (ENSMLUG00000014522)	NPEPPS (ENSMLUG00000013342)	MRPL45 (ENSMLUG00000002863)	GPR179 (ENSMLUG00000002866)	SOCS7 (ENSMLUG00000002876)
Megabat	MODERN SPECIES	2332								COPZ2 (ENSPVAG00000004259) #16	CDK5RAP3 (ENSPVAG00000004258) #18	PNPO (ENSPVAG00000004256) #20	SP2 (ENSPVAG00000004255)	SP6 (ENSPVAG00000004254)	SCRN2 (ENSPVAG00000004253)	LRRC46 (ENSPVAG00000004252)	MRPL10 (ENSPVAG00000004251) #21	OSBPL7 (ENSPVAG00000004250) #22
Eulipotyphla	ANCESTRAL SPECIES	197													ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22
Common shrew	MODERN SPECIES	4666														SCRN2 (ENSSARG00000001593)	MRPL10 (ENSSARG00000001586) #21	ENSSARG00000001556 #22
Hedgehog	MODERN SPECIES	6333													SCRN2 (ENSEEUG00000004041)	LRRC46 (ENSEEUG00000004007)	MRPL10 (ENSEEUG00000003993) #21	OSBPL7 (ENSEEUG00000003891) #22
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00940000155029.c.b #10	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Elephant	MODERN SPECIES	310	ENSLAFG00000031610	SKAP1 (ENSLAFG00000018530) #13	SNX11 (ENSLAFG00000018529) #14	CBX1 (ENSLAFG00000018526)	NFE2L1 (ENSLAFG00000018523) ##15	ENSLAFG00000015209 #16	ENSLAFG00000030284	CDK5RAP3 (ENSLAFG00000000339) #18	PRR15L (ENSLAFG00000015553) ##19	PNPO (ENSLAFG00000015550) #20	SP2 (ENSLAFG00000021817)	SP6 (ENSLAFG00000010701)	SCRN2 (ENSLAFG00000025964)	LRRC46 (ENSLAFG00000006826)	MRPL10 (ENSLAFG00000028127) #21	OSBPL7 (ENSLAFG00000006819) #22	TBX21 (ENSLAFG00000028463)	TBKBP1 (ENSLAFG00000001330) #24	KPNB1 (ENSLAFG00000001328)	NPEPPS (ENSLAFG00000001325)	MRPL45 (ENSLAFG00000014050)	ENSLAFG00000015267	SOCS7 (ENSLAFG00000015279)	ARHGAP23 (ENSLAFG00000028622)	SRCIN1 (ENSLAFG00000012974)	EPOP (ENSLAFG00000023127)	MLLT6 (ENSLAFG00000022685)	CISD3 (ENSLAFG00000027084)	PCGF2 (ENSLAFG00000021390)	ENSLAFG00000002233	PIP4K2B (ENSLAFG00000002236)
Hyrax	MODERN SPECIES	4555							CBX1 (ENSPCAG00000002381)	COPZ2 (ENSPCAG00000002327) #16	CDK5RAP3 (ENSPCAG00000002257) #18	PRR15L (ENSPCAG00000002248) ##19	PNPO (ENSPCAG00000002196) #20	SP2 (ENSPCAG00000002140)	SCRN2 (ENSPCAG00000002092)	LRRC46 (ENSPCAG00000002042)	ENSPCAG00000002027	OSBPL7 (ENSPCAG00000001932) #22
Tenrec	MODERN SPECIES	4778															ENSETEG00000007979 #21	ENSETEG00000007972 #22
Xenarthra	ANCESTRAL SPECIES	258			ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397
Armadillo	MODERN SPECIES	825			SKAP1 (ENSDNOG00000039133) #13	SNX11 (ENSDNOG00000032877) #14	CBX1 (ENSDNOG00000040249)	NFE2L1 (ENSDNOG00000047006) ##15	COPZ2 (ENSDNOG00000037475) #16	CDK5RAP3 (ENSDNOG00000030779) #18	PRR15L (ENSDNOG00000008323) ##19	PNPO (ENSDNOG00000032160) #20	SP2 (ENSDNOG00000013944)	SP6 (ENSDNOG00000042665)	SCRN2 (ENSDNOG00000034719)	LRRC46 (ENSDNOG00000047964)	MRPL10 (ENSDNOG00000024176) #21	OSBPL7 (ENSDNOG00000033308) #22	ENSDNOG00000045438
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397.b	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397.b	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397.b	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00940000159503	ENSGT00390000017856.b #13	ENSGT00940000160113 #14	ENSGT00940000154152.d	ENSGT00950000182892.a.b.a.a ##15	ENSGT00390000004405.b #16	ENSGT00390000000713 #18	ENSGT00940000154534.a ##19	ENSGT00390000011219 #20	ENSGT00640000092844	ENSGT00940000159590	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603 #21	ENSGT00940000157439 #22	ENSGT00940000160397.b	ENSGT00940000153704.B #24	ENSGT00550000074898	ENSGT00940000155246.e	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314	ENSGT00940000157982.b	ENSGT00940000157961.C	ENSGT00940000153451.a.a.a	ENSGT00940000158572	ENSGT00390000004574	ENSGT00940000159730	ENSGT00550000074820	ENSGT00940000159874
koala	MODERN SPECIES	67	HOXB1 (ENSPCIG00000033449)	SKAP1 (ENSPCIG00000000339) #13	SNX11 (ENSPCIG00000000612) #14	CBX1 (ENSPCIG00000000630)	NFE2L1 (ENSPCIG00000000720) ##15	COPZ2 (ENSPCIG00000000757) #16	CDK5RAP3 (ENSPCIG00000000798) #18	PRR15L (ENSPCIG00000000814) ##19	PNPO (ENSPCIG00000000828) #20	ENSPCIG00000000834	SP2 (ENSPCIG00000000843)	SP6 (ENSPCIG00000000873)	SCRN2 (ENSPCIG00000000883)	LRRC46 (ENSPCIG00000000900)	MRPL10 (ENSPCIG00000031062) #21	OSBPL7 (ENSPCIG00000000940) #22	ENSPCIG00000000999	TBKBP1 (ENSPCIG00000001017) #24	KPNB1 (ENSPCIG00000001034)	NPEPPS (ENSPCIG00000009620)	MRPL45 (ENSPCIG00000001069)	ENSPCIG00000001092	SOCS7 (ENSPCIG00000001102)	ARHGAP23 (ENSPCIG00000001149)	SRCIN1 (ENSPCIG00000001224)	EPOP (ENSPCIG00000001334)	MLLT6 (ENSPCIG00000001404)	CISD3 (ENSPCIG00000002885)	PCGF2 (ENSPCIG00000002900)	ENSPCIG00000002917	PIP4K2B (ENSPCIG00000002926)
Common wonbat	MODERN SPECIES	1037	HOXB1 (ENSVURG00010007572)	SKAP1 (ENSVURG00010007559) #13	SNX11 (ENSVURG00010007541) #14	CBX1 (ENSVURG00010007537)	NFE2L1 (ENSVURG00010007465) ##15	COPZ2 (ENSVURG00010007430) #16	CDK5RAP3 (ENSVURG00010007403) #18	PRR15L (ENSVURG00010007394) ##19	PNPO (ENSVURG00010007376) #20	ENSVURG00010007365	SP2 (ENSVURG00010007347)	SP6 (ENSVURG00010007336)	SCRN2 (ENSVURG00010007326)	LRRC46 (ENSVURG00010007320)	MRPL10 (ENSVURG00010007313) #21	OSBPL7 (ENSVURG00010007175) #22	TBX21 (ENSVURG00010007151)	TBKBP1 (ENSVURG00010007134) #24	KPNB1 (ENSVURG00010007118)	ENSVURG00010007112	MRPL45 (ENSVURG00010007098)	ENSVURG00010007072	SOCS7 (ENSVURG00010006912)	ARHGAP23 (ENSVURG00010006847)	SRCIN1 (ENSVURG00010006777)	EPOP (ENSVURG00010006761)	MLLT6 (ENSVURG00010006746)	CISD3 (ENSVURG00010006737)	PCGF2 (ENSVURG00010006725)	PSMB3 (ENSVURG00010006718)	PIP4K2B (ENSVURG00010006712)
Wallaby	MODERN SPECIES	9257												SP6 (ENSMEUG00000007329)	SCRN2 (ENSMEUG00000007319)	ENSMEUG00000007300	ENSMEUG00000007293 #21	OSBPL7 (ENSMEUG00000007269) #22
Tasmanian devil	MODERN SPECIES	3	HOXB1 (ENSSHAG00000012150)	ENSSHAG00000029678	SNX11 (ENSSHAG00000029423) #14	CBX1 (ENSSHAG00000023789)	NFE2L1 (ENSSHAG00000026195) ##15	COPZ2 (ENSSHAG00000023675) #16	CDK5RAP3 (ENSSHAG00000006548) #18	PRR15L (ENSSHAG00000025985) ##19	PNPO (ENSSHAG00000023730) #20	ENSSHAG00000005930	SP2 (ENSSHAG00000005633)	SP6 (ENSSHAG00000030597)	SCRN2 (ENSSHAG00000003868)	LRRC46 (ENSSHAG00000003740)	MRPL10 (ENSSHAG00000030224) #21	OSBPL7 (ENSSHAG00000003116) #22	ENSSHAG00000028042	ENSSHAG00000018315	TBKBP1 (ENSSHAG00000021573) #24	ENSSHAG00000018214	ENSSHAG00000018038	ENSSHAG00000025003	ENSSHAG00000017950	SOCS7 (ENSSHAG00000031561)	ARHGAP23 (ENSSHAG00000017726)	SRCIN1 (ENSSHAG00000017633)	ENSSHAG00000025033	EPOP (ENSSHAG00000028219)	MLLT6 (ENSSHAG00000017418)	ENSSHAG00000023926	PCGF2 (ENSSHAG00000029010)
Opossum	MODERN SPECIES	1	HOXB1 (ENSMODG00000046816)	SKAP1 (ENSMODG00000012360) #13	SNX11 (ENSMODG00000051179) #14	CBX1 (ENSMODG00000012368)	NFE2L1 (ENSMODG00000012375) ##15	COPZ2 (ENSMODG00000012424) #16	CDK5RAP3 (ENSMODG00000012439) #18	PRR15L (ENSMODG00000024090) ##19	PNPO (ENSMODG00000012446) #20	ENSMODG00000050066	SP2 (ENSMODG00000012452)	SP6 (ENSMODG00000012454)	SCRN2 (ENSMODG00000012467)	LRRC46 (ENSMODG00000012473)	MRPL10 (ENSMODG00000038269) #21	OSBPL7 (ENSMODG00000012518) #22	ENSMODG00000012526	ENSMODG00000039000 #24	KPNB1 (ENSMODG00000012505)	NPEPPS (ENSMODG00000012557)	MRPL45 (ENSMODG00000012560)	GPR179 (ENSMODG00000012564)	SOCS7 (ENSMODG00000012566)	ARHGAP23 (ENSMODG00000012570)	SRCIN1 (ENSMODG00000012577)	ENSMODG00000012582	MLLT6 (ENSMODG00000012598)	CISD3 (ENSMODG00000051085)	PCGF2 (ENSMODG00000012607)	PSMB3 (ENSMODG00000012614)	PIP4K2B (ENSMODG00000012623)
Platypus	MODERN SPECIES	2	HOXB2 (ENSOANG00000041050) #10	HOXB1 (ENSOANG00000010307)	ENSOANG00000044458	SKAP1 (ENSOANG00000010840) #13	ENSOANG00000039817 #14	CBX1 (ENSOANG00000049057)	NFE2L1 (ENSOANG00000043783) ##15	ENSOANG00000048116 #18	PRR15L (ENSOANG00000013452) ##19	PNPO (ENSOANG00000013451) #20	ENSOANG00000049621	SP2 (ENSOANG00000050083)	SCRN2 (ENSOANG00000001540)	ENSOANG00000001541	MRPL10 (ENSOANG00000006797) #21	OSBPL7 (ENSOANG00000012288) #22	ENSOANG00000012287	TBKBP1 (ENSOANG00000030462) #24	KPNB1 (ENSOANG00000005371)	ENSOANG00000036194	ENSOANG00000036757	ENSOANG00000037618	PPP2R1B (ENSOANG00000014964)	ALG9 (ENSOANG00000003843)	CFAP68 (ENSOANG00000048516)	HSPB2 (ENSOANG00000037146)	CRYAB (ENSOANG00000006525)	DIXDC1 (ENSOANG00000050939)	DLAT (ENSOANG00000010422)	ENSOANG00000048990	ENSOANG00000019850
Coelacanth	MODERN SPECIES	278	HOXB6 (ENSLACG00000014999)	HOXB7 (ENSLACG00000015078)	HOXB8 (ENSLACG00000015099)	HOXB9 (ENSLACG00000015129)	hoxb10a (ENSLACG00000015207)	HOXB13 (ENSLACG00000015543)	ENSLACG00000015759	TTLL6 (ENSLACG00000015912)	ENSLACG00000016150	ATP5MC1 (ENSLACG00000016305)	UBE2Z (ENSLACG00000016325)	SNF8 (ENSLACG00000016411)	igf2bp1 (ENSLACG00000016755)	LRRC46 (ENSLACG00000022295)	MRPL10 (ENSLACG00000016860) #21	OSBPL7 (ENSLACG00000016893) #22	TBX21 (ENSLACG00000016985)	ENSLACG00000017287	TBKBP1 (ENSLACG00000017427) #24	KPNB1 (ENSLACG00000017620)	NPEPPS (ENSLACG00000017706)	ENSLACG00000017902	MRPL45 (ENSLACG00000017910)	ENSLACG00000017929	SOCS7 (ENSLACG00000017987)	ARHGAP23 (ENSLACG00000018128)	ENSLACG00000018243	ENSLACG00000018326