Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000160958 #8	ENSGT00390000001969.a #9	ENSGT00390000011648.b #10	ENSGT00940000156496 #11	ENSGT00940000158791 #12	ENSGT00940000154955.f #13	ENSGT00940000155644 #14	ENSGT00940000160965 #15	ENSGT00950000182945.b.a.a.b.a #16	ENSGT00940000156024 #17	ENSGT00950000183119.a.e.a.d.g.a.a #18	ENSGT00390000000873.a.a #19	ENSGT00940000159166 #20	ENSGT00950000182852.B #21	ENSGT01090000262147	ENSGT00940000155343 #22	ENSGT00940000158400 #23	ENSGT00530000063849.B #24	ENSGT00940000160251 #25	ENSGT01030000234555.a.a.b.a.b.a #26	ENSGT00930000151073 #27	ENSGT00390000015005 #28	ENSGT00390000001958 #29	ENSGT00390000010711 #30	ENSGT00940000162223 #31	ENSGT00390000001017 #32	ENSGT00940000154557.c.a.d.a.b #33	ENSGT00940000154557.c.a.c #34	ENSGT00940000154557.c.a.d.a.a #36	ENSGT00940000154557.c.a.d.b #37	ENSGT00950000182931.A
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000001969.a #9	ENSGT00390000011648.b #10	ENSGT00940000156496 #11	ENSGT00940000158791 #12	ENSGT00940000154955.f #13	ENSGT00940000155644 #14	ENSGT00940000160965 #15	ENSGT00950000182945.b.a.a.b.a #16	ENSGT00940000156024 #17	ENSGT00950000183119.a.e.a.d.g.a.a #18	ENSGT00390000000873.a.a #19	ENSGT00940000159166 #20	ENSGT00950000182852.B #21	ENSGT01090000262147	ENSGT01090000262870	ENSGT00940000155343 #22	ENSGT00940000158400 #23	ENSGT00530000063849.B #24	ENSGT00940000160251 #25	ENSGT01030000234555.a.a.b.a.b.a #26	ENSGT00930000151073 #27	ENSGT00390000015005 #28	ENSGT00390000001958 #29	ENSGT00390000010711 #30	ENSGT00940000162223 #31	ENSGT00390000001017 #32	ENSGT00940000154557.c.a.d.a.b #33	ENSGT00940000154557.c.a.c #34	ENSGT00940000154557.c.a.d.a.a.c.a #35	ENSGT00940000154557.c.a.d.a.a.d #36	ENSGT00940000154557.c.a.d.b #37
Mouse	MODERN SPECIES	12	Bcl2l15 (ENSMUSG00000044165) #7	Ptpn22 (ENSMUSG00000027843) #8	Rsbn1 (ENSMUSG00000044098) #9	Phtf1 (ENSMUSG00000058388) #10	Magi3 (ENSMUSG00000052539) #11	Lrig2 (ENSMUSG00000032913) #12	Slc16a1 (ENSMUSG00000032902) #13	Tafa3 (ENSMUSG00000055865) #14	Ppm1j (ENSMUSG00000002228) #15	Rhoc (ENSMUSG00000002233) #16	Mov10 (ENSMUSG00000002227) #17	Capza1 (ENSMUSG00000070372) #18	St7l (ENSMUSG00000045576) #19	Wnt2b (ENSMUSG00000027840) #20	Cttnbp2nl (ENSMUSG00000062127) #21	Kcnd3 (ENSMUSG00000040896) #22	Ddx20 (ENSMUSG00000027905) #23	Inka2 (ENSMUSG00000048458) #24	Rap1a (ENSMUSG00000068798) #25	Adora3 (ENSMUSG00000000562) #26	Tmigd3 (ENSMUSG00000074344) #27	I830077J02Rik (ENSMUSG00000074342) #28	Atp5pb (ENSMUSG00000000563) #29	Wdr77 (ENSMUSG00000000561) #30	Ovgp1 (ENSMUSG00000074340) #31	Pifo (ENSMUSG00000010136) #32	Chil5 (ENSMUSG00000043873) #33	Chia1 (ENSMUSG00000062778) #34	Chil3 (ENSMUSG00000040809) #35	Chil4 (ENSMUSG00000063779) #36	Chil6 (ENSMUSG00000027902) #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000001969.a #9	ENSGT00390000011648.b #10	ENSGT00940000156496 #11	ENSGT00940000158791 #12	ENSGT00940000154955.f #13	ENSGT00940000155644 #14	ENSGT00940000160965 #15	ENSGT00950000182945.b.a.a.b.a #16	ENSGT00940000156024 #17	ENSGT00950000183119.a.e.a.d.g.a.a #18	ENSGT00390000000873.a.a #19	ENSGT00940000159166 #20	ENSGT00950000182852.B #21	ENSGT01090000262147	ENSGT01090000262870	ENSGT00940000155343 #22	ENSGT00940000158400 #23	ENSGT00530000063849.B #24	ENSGT00940000160251 #25	ENSGT01030000234555.a.a.b.a.b.a #26	ENSGT00930000151073 #27	ENSGT00390000015005 #28	ENSGT00390000001958 #29	ENSGT00390000010711 #30	ENSGT00940000162223 #31	ENSGT00390000001017 #32	ENSGT00940000154557.c.a.d.a.b #33	ENSGT00940000154557.c.a.c #34	ENSGT00940000154557.c.a.d.b #37	ENSGT00950000182931.A	ENSGT00950000183117.a.b
Steppe mouse	MODERN SPECIES	2708																Kcnd3 (ENSMSIG00000005944) #22	Ddx20 (ENSMSIG00000005900) #23	Inka2 (ENSMSIG00000005873) #24	Rap1a (ENSMSIG00000005828) #25	Adora3 (ENSMSIG00000005809) #26	Tmigd3 (ENSMSIG00000005765) #27	I830077J02Rik (ENSMSIG00000005744) #28	ENSMSIG00000005701 #29	Wdr77 (ENSMSIG00000005672) #30	Ovgp1 (ENSMSIG00000005625) #31	Pifo (ENSMSIG00000005553) #32	Chil5 (ENSMSIG00000005504) #33	ENSMSIG00000005488	Chia1 (ENSMSIG00000005457) #34	Chil3 (ENSMSIG00000005424) #35	Chil4 (ENSMSIG00000005364) #36
spretus	MODERN SPECIES	12	Ptpn22 (MGP_SPRETEiJ_G0026407) #8	Rsbn1 (MGP_SPRETEiJ_G0026408) #9	Phtf1 (MGP_SPRETEiJ_G0026409) #10	Magi3 (MGP_SPRETEiJ_G0026410) #11	Lrig2 (MGP_SPRETEiJ_G0026411) #12	Slc16a1 (MGP_SPRETEiJ_G0026412) #13	Tafa3 (MGP_SPRETEiJ_G0026413) #14	Ppm1j (MGP_SPRETEiJ_G0026414) #15	Rhoc (MGP_SPRETEiJ_G0026415) #16	Mov10 (MGP_SPRETEiJ_G0026416) #17	Capza1 (MGP_SPRETEiJ_G0026417) #18	St7l (MGP_SPRETEiJ_G0026418) #19	Wnt2b (MGP_SPRETEiJ_G0026419) #20	Cttnbp2nl (MGP_SPRETEiJ_G0026420) #21	MGP_SPRETEiJ_G0026421	Kcnd3 (MGP_SPRETEiJ_G0026422) #22	Ddx20 (MGP_SPRETEiJ_G0026423) #23	Inka2 (MGP_SPRETEiJ_G0026424) #24	Rap1a (MGP_SPRETEiJ_G0026425) #25	MGP_SPRETEiJ_G0026426 #26	Tmigd3 (MGP_SPRETEiJ_G0026427) #27	I830077J02Rik (MGP_SPRETEiJ_G0026428) #28	Atp5pb (MGP_SPRETEiJ_G0026429) #29	Wdr77 (MGP_SPRETEiJ_G0026430) #30	Ovgp1 (MGP_SPRETEiJ_G0026431) #31	Pifo (MGP_SPRETEiJ_G0026432) #32	Chil5 (MGP_SPRETEiJ_G0026433) #33	Chia1 (MGP_SPRETEiJ_G0026434) #34	Chil6 (MGP_SPRETEiJ_G0026436) #37	Dennd2d (MGP_SPRETEiJ_G0026437)	Cept1 (MGP_SPRETEiJ_G0026438)
Ryukyu mouse	MODERN SPECIES	12	Ptpn22 (MGP_CAROLIEiJ_G0025458) #8	Rsbn1 (MGP_CAROLIEiJ_G0025459) #9	Phtf1 (MGP_CAROLIEiJ_G0025460) #10	Magi3 (MGP_CAROLIEiJ_G0025461) #11	Lrig2 (MGP_CAROLIEiJ_G0025462) #12	Slc16a1 (MGP_CAROLIEiJ_G0025463) #13	Tafa3 (MGP_CAROLIEiJ_G0025464) #14	Ppm1j (MGP_CAROLIEiJ_G0025465) #15	Rhoc (MGP_CAROLIEiJ_G0025466) #16	Mov10 (MGP_CAROLIEiJ_G0025467) #17	Capza1 (MGP_CAROLIEiJ_G0025468) #18	St7l (MGP_CAROLIEiJ_G0025469) #19	Wnt2b (MGP_CAROLIEiJ_G0025470) #20	Cttnbp2nl (MGP_CAROLIEiJ_G0025471) #21	MGP_CAROLIEiJ_G0025472	Kcnd3 (MGP_CAROLIEiJ_G0025473) #22	Ddx20 (MGP_CAROLIEiJ_G0025474) #23	Inka2 (MGP_CAROLIEiJ_G0025475) #24	Rap1a (MGP_CAROLIEiJ_G0025476) #25	Adora3 (MGP_CAROLIEiJ_G0025477) #26	Tmigd3 (MGP_CAROLIEiJ_G0025478) #27	I830077J02Rik (MGP_CAROLIEiJ_G0025479) #28	Atp5pb (MGP_CAROLIEiJ_G0025480) #29	Wdr77 (MGP_CAROLIEiJ_G0025481) #30	Ovgp1 (MGP_CAROLIEiJ_G0025482) #31	Pifo (MGP_CAROLIEiJ_G0025483) #32	Chil5 (MGP_CAROLIEiJ_G0025484) #33	Chia1 (MGP_CAROLIEiJ_G0025485) #34	Chil6 (MGP_CAROLIEiJ_G0025486) #37	Dennd2d (MGP_CAROLIEiJ_G0025487)	Cept1 (MGP_CAROLIEiJ_G0025488)