Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000157642 #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000157642 #22
Euteleostomi	ANCESTRAL SPECIES	889														ENSGT00390000014159	ENSGT00390000018500.a	ENSGT00940000157642 #22
Sarcopterygii	ANCESTRAL SPECIES	743														ENSGT00390000014159	ENSGT00390000018500.a	ENSGT00940000157642 #22
Tetrapoda	ANCESTRAL SPECIES	340															ENSGT00390000018500.a	ENSGT00940000157642 #22	ENSGT00940000163974
Amniota	ANCESTRAL SPECIES	66														ENSGT00390000018500.a	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00940000160110	ENSGT00940000161280	ENSGT00950000182944.D	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000158255	ENSGT00630000089917	ENSGT00940000158605.eb.b	ENSGT00940000159890	ENSGT00940000159733	ENSGT00390000003213	ENSGT00560000077232.A	ENSGT00940000154370
Mammalia	ANCESTRAL SPECIES	57	ENSGT00390000008276	ENSGT00390000010554	ENSGT00940000159263	ENSGT00940000158329	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00940000153527.d #21	ENSGT00940000162079	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244828.c.b.a ##30	ENSGT01090000260086.E	ENSGT01050000244828.c.b.b.b ##30	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a #30	ENSGT00940000162974
Theria	ANCESTRAL SPECIES	4	ENSGT00390000010554	ENSGT00940000159263	ENSGT00940000158329	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26
Eutheria	ANCESTRAL SPECIES	33	ENSGT00940000161804	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00860000135184.f.a	ENSGT00980000198488.m.b.b.b ##20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263548.b.a.a.b.c.a ##34	ENSGT01050000244815.A.c.a.a.a ##25
Primates	ANCESTRAL SPECIES	5	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00980000198488.m.b.b.b ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263548.b.a.a.b.c.a ##34	ENSGT01100000263548.b.a.a.b.d ##34	ENSGT01100000263548.b.a.b ##34	ENSGT01100000263548.a.a.b ##34
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00980000198488.m.a.b.b ##20	ENSGT00860000135184.f.b	ENSGT00980000198488.m.b.b.b ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01050000244815.A.c.a.a.a ##25	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b #33	ENSGT01100000263548.a.b.a #34	ENSGT01100000263486.a.b.a.a.b #35
Simiiformes	ANCESTRAL SPECIES	5	ENSGT01010000223167	ENSGT00980000198488.m.a.a.a.a.k.a ##20	ENSGT00980000198488.m.b.b.b ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000009004.ab.a	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01050000244815.A.c.a.a.a ##25	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b #33	ENSGT01100000263548.a.b.a #34	ENSGT01100000263486.a.b.a.a.b #35
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00980000198488.m.a.a.a.a.k.a.d.a ##20	ENSGT00910000147395	ENSGT01100000263475.e	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.a #27	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n #32	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m #33	ENSGT01100000263548.a.b.a #34	ENSGT01100000263486.a.b.a.a.b #35	ENSGT01100000263486.a.b.a.a.a.b ##35	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000160807
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00980000198488.m.b.a.b ##20	ENSGT00940000162213.g	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00980000198488.m.a.a.a.a.k.a.d.b ##20	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.a.b #27	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n.a #32	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m #33	ENSGT01100000263548.a.b.a #34	ENSGT01100000263486.a.b.a.a.b #35	ENSGT01100000263486.a.b.a.a.a.b ##35	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000160807
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00390000009004.ab.a	ENSGT00940000153664.B.k.a	ENSGT00940000154942.h.r	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.b.a.a.b #18	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.b.b.a.b #19	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.a.b #27	ENSGT00940000156465.a.a ##27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.c #31	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n.a #32	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.d #33	ENSGT01100000263548.a.b.a #34
Vervet Monkey	MODERN SPECIES	8	ENSCSAG00000008166 #7	RPP21 (ENSCSAG00000008160) #8	TRIM39 (ENSCSAG00000008158) #9	TRIM26 (ENSCSAG00000008151) #10	TRIM15 (ENSCSAG00000008133) #11	TRIM10 (ENSCSAG00000008129) #12	TRIM40 (ENSCSAG00000008122) #13	ENSCSAG00000008116 #14	RNF39 (ENSCSAG00000008112) #15	PPP1R11 (ENSCSAG00000008107) #16	POLR1H (ENSCSAG00000008101) #17	ENSCSAG00000008095 #18	ENSCSAG00000008089 #19	HLA-F (ENSCSAG00000008083) #20	MOG (ENSCSAG00000008080) #21	GABBR1 (ENSCSAG00000008072) #22	OR2H2 (ENSCSAG00000019312) #23	UBD (ENSCSAG00000008065) #24	OR10C1 (ENSCSAG00000019313) #25	OR11A1 (ENSCSAG00000019065) #26	ENSCSAG00000019066 #27	OR12D3 (ENSCSAG00000019067) #28	OR5V1 (ENSCSAG00000019068) #29	OR14J1 (ENSCSAG00000019069) #30	ENSCSAG00000019070 #31	OR2J3 (ENSCSAG00000019071) #32	ENSCSAG00000019072 #33	OR2B3 (ENSCSAG00000019073) #34	OR2W1 (ENSCSAG00000019074) #35	ZNF311 (ENSCSAG00000008062) #36	ENSCSAG00000008061 #37
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00980000198488.m.b.a.b ##20	ENSGT00940000162213.g	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00390000009004.ab.a	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.b.b.a.b #19	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.a.a ##27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01050000244815.A.c.a.a.a ##25	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n.b ##35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.c #31	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n.a #32	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.d #33
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT00980000198488.m.b.a.b ##20	ENSGT00940000162213.g	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00390000009004.ab.a	ENSGT01100000263475.e	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.a.a ##27	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.c #31	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n.a #32	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.d #33	ENSGT01100000263548.a.b.a #34	ENSGT01100000263486.a.b.a.a.b #35	ENSGT01100000263486.a.b.a.a.a.b ##35	ENSGT00940000163512 #36
Cercopithecinae_d	ANCESTRAL SPECIES	215												ENSGT01100000263475.e	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT00940000156281.j	ENSGT00940000163392 #26	ENSGT00940000156465.a.a ##27	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.b.a.a.b.c.b ##34
Drill	MODERN SPECIES	164														ZFP57 (ENSMLEG00000042297)	MOG (ENSMLEG00000041810) #21	GABBR1 (ENSMLEG00000034768) #22	OR2H2 (ENSMLEG00000031333) #23	UBD (ENSMLEG00000030085) #24
Sooty mangabey	MODERN SPECIES	334												ENSCATG00000033544	HLA-F (ENSCATG00000006997) #20	ZFP57 (ENSCATG00000026105)	MOG (ENSCATG00000039754) #21	GABBR1 (ENSCATG00000024889) #22	UBD (ENSCATG00000024185) #24	ENSCATG00000014870	OR11A1 (ENSCATG00000043168) #26	ENSCATG00000043271 ##27	OR14J1 (ENSCATG00000042707) #30	ENSCATG00000008889 ##34
Olive baboon	MODERN SPECIES	16	ENSPANG00000014872	TRIM26 (ENSPANG00000000654) #10	TRIM15 (ENSPANG00000010495) #11	TRIM10 (ENSPANG00000030473) #12	TRIM40 (ENSPANG00000050018) #13	RNF39 (ENSPANG00000018611) #15	PPP1R11 (ENSPANG00000046500) #16	POLR1H (ENSPANG00000024247) #17	ENSPANG00000041454	ENSPANG00000041807	PACA-F (ENSPANG00000007708) #20	ZFP57 (ENSPANG00000037989)	ENSPANG00000047408	MOG (ENSPANG00000004308) #21	OR2H2 (ENSPANG00000018704) #23	GABBR1 (ENSPANG00000009408) #22	OR2I1P (ENSPANG00000045881) ##35	UBD (ENSPANG00000041372) #24	OR10C1 (ENSPANG00000037061) #25	OR11A1 (ENSPANG00000040622) #26	ENSPANG00000017571 ##27	OR5V1 (ENSPANG00000003458) #29	OR14J1 (ENSPANG00000041457) #30	ENSPANG00000013952 #31	OR2J3 (ENSPANG00000019387) #32	ENSPANG00000038289 #33	OR2B3 (ENSPANG00000048715) #34	OR2W1 (ENSPANG00000050377) #35	ENSPANG00000042549	ZNF311 (ENSPANG00000047970) #36	TRIM27 (ENSPANG00000006411)
Macaca	ANCESTRAL SPECIES	23	ENSGT00980000198488.m.b.b.b.p ##20	ENSGT00940000162213.g	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00390000009004.ab.a	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.b.b.a.b #19	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00940000163392 #26	ENSGT00940000156465.a.b #27	ENSGT00940000156465.a.a ##27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01050000244815.A.c.a.a.a ##25	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n.b ##35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.c #31	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n.a #32	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.d #33
Pig-tailed macaque	MODERN SPECIES	179												HLA-F (ENSMNEG00000039482) #20	HLA-G (ENSMNEG00000006424) ##20	ZFP57 (ENSMNEG00000038275)	MOG (ENSMNEG00000041042) #21	GABBR1 (ENSMNEG00000028478) #22	UBD (ENSMNEG00000032834) #24	ENSMNEG00000033210	OR11A1 (ENSMNEG00000004854) #26	ENSMNEG00000013441 ##27	OR14J1 (ENSMNEG00000038282) #30	ENSMNEG00000039847 ##25	ENSMNEG00000034291 ##35	OR2J3 (ENSMNEG00000025510) #32	ENSMNEG00000034648 #33	OR2B3 (ENSMNEG00000037755) #34	OR2W1 (ENSMNEG00000038098) #35	ZNF311 (ENSMNEG00000042475) #36	TRIM27 (ENSMNEG00000028405)	SCAND3 (ENSMNEG00000032908)	GPX5 (ENSMNEG00000036668)
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00940000153664.B.k.a	ENSGT00980000198488.m.a.a.a.a.k.a.d.a ##20	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.b.a.b ##20	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.b.b.a.a.b ##20	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.b.b.a.b #19	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00940000163392 #26	ENSGT00940000156465.a.b #27	ENSGT00940000156465.a.a ##27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.c #31	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n.a #32	ENSGT01100000263548.a.b.a #34	ENSGT01100000263486.a.b.a.a.b #35	ENSGT00940000163512 #36
Crab-eating macaque	MODERN SPECIES	14	RNF39 (ENSMFAG00000040191) #15	PPP1R11 (ENSMFAG00000001673) #16	POLR1H (ENSMFAG00000039802) #17	ENSMFAG00000052346	ENSMFAG00000059114 ##20	ENSMFAG00000050860 ##20	ENSMFAG00000052002	ENSMFAG00000058652 ##20	ENSMFAG00000060226 ##20	ENSMFAG00000045172 ##20	ENSMFAG00000064431 ##20	ENSMFAG00000055336 ##20	HLA-F (ENSMFAG00000040925) #20	ZFP57 (ENSMFAG00000033585)	MOG (ENSMFAG00000037244) #21	GABBR1 (ENSMFAG00000040724) #22	OR2H2 (ENSMFAG00000033095) #23	UBD (ENSMFAG00000036615) #24	OR2I1P (ENSMFAG00000063052) ##35	OR11A1 (ENSMFAG00000058692) #26	ENSMFAG00000025252 #27	ENSMFAG00000008214 ##27	OR12D3 (ENSMFAG00000009074) #28	OR5V1 (ENSMFAG00000064385) #29	OR14J1 (ENSMFAG00000006638) #30	ENSMFAG00000031410 #31	OR2J3 (ENSMFAG00000013199) #32	OR2B3 (ENSMFAG00000051063) #34	OR2W1 (ENSMFAG00000017613) #35	ZNF311 (ENSMFAG00000041393) #36	ENSMFAG00000062458
Rhesus	MODERN SPECIES	14	RNF39 (ENSMMUG00000012124) #15	PPP1R11 (ENSMMUG00000012122) #16	POLR1H (ENSMMUG00000012120) #17	ENSMMUG00000055272	ENSMMUG00000056544	ENSMMUG00000037625	ENSMMUG00000050761 ##20	MAMU-A (ENSMMUG00000056914) ##20	ENSMMUG00000050016 ##20	ENSMMUG00000058325 ##20	ENSMMUG00000043529 ##20	ENSMMUG00000051745 #19	MAMU-F (ENSMMUG00000008799) #20	ZFP57 (ENSMMUG00000045668)	MOG (ENSMMUG00000002967) #21	GABBR1 (ENSMMUG00000021483) #22	OR2H2 (ENSMMUG00000021482) #23	UBD (ENSMMUG00000049400) #24	OR2I1P (ENSMMUG00000063451) ##35	OR11A1 (ENSMMUG00000029882) #26	ENSMMUG00000050767 #27	OR12D2 (ENSMMUG00000053219) ##27	OR12D3 (ENSMMUG00000065179) #28	OR5V1 (ENSMMUG00000049407) #29	OR14J1 (ENSMMUG00000015365) #30	ENSMMUG00000013909 ##34	ENSMMUG00000012092 #31	OR2J3 (ENSMMUG00000029883) #32	OR2B3 (ENSMMUG00000005415) #34	OR2W1 (ENSMMUG00000004377) #35	ZNF311 (ENSMMUG00000006510) #36
Rhinopithecus	ANCESTRAL SPECIES	434										ENSGT00980000198488.m.a.a.a.a.k.b.a.b.b.a #18	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.b.b #19	ENSGT00980000198488.m.a.a.a.a.l ##20	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000156465.a.b #27	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.b #33
Golden snub-nosed monkey	MODERN SPECIES	2290										ENSRROG00000037857	ENSRROG00000032300 #19	ENSRROG00000036427 ##20	ENSRROG00000036640 #20	ZFP57 (ENSRROG00000040689)	MOG (ENSRROG00000045076) #21	GABBR1 (ENSRROG00000045244) #22	UBD (ENSRROG00000010636) #24	ENSRROG00000034419
Black snub-nosed monkey	MODERN SPECIES	309										ENSRBIG00000042912 #18	ENSRBIG00000018203 #19	ENSRBIG00000027463 ##20	HLA-F (ENSRBIG00000035680) #20	ZFP57 (ENSRBIG00000032999)	MOG (ENSRBIG00000034072) #21	GABBR1 (ENSRBIG00000040017) #22	UBD (ENSRBIG00000037211) #24	OR10C1 (ENSRBIG00000034332) #25	ENSRBIG00000016354 #27	ENSRBIG00000027933	ENSRBIG00000043337 ##25	ENSRBIG00000040914 ##34	ENSRBIG00000042045 #33
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00980000198488.m.a.a.a.a.k.a.d.a ##20	ENSGT00910000147395	ENSGT01100000263517.b.d.m.a.a.a.b.w	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.a #27	ENSGT00940000156465.b ##27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n #32	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m #33	ENSGT01100000263548.a.b.a #34
Hominidae	ANCESTRAL SPECIES	5	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT01100000263517.b.d.m.a.a.a.b.w	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.a #27	ENSGT00940000156465.b ##27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.f #33	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.n #32	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.m.e #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00860000136094	ENSGT00980000198488.m.a.a.a.a.k.a.d.a ##20	ENSGT00910000147395	ENSGT00980000198488.m.a.a.a.a.k.b.a.a.a ##20	ENSGT00980000198488.m.a.a.a.a.k.b.a.a.b.a.a ##20	ENSGT00980000198488.m.a.a.a.a.k.a.d.b ##20	ENSGT00980000198488.m.b.b.b ##20	ENSGT00980000198488.n ##20	ENSGT00860000135184.f.a	ENSGT01100000263517.b.d.m.a.a.a.b.w	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.k.a #23	ENSGT01100000263548.b.a.a.a.b.a.k.b #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00390000006548.b.j.b.c	ENSGT01100000263548.b.a.a.a.b.a.l #23	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.a #27	ENSGT00940000156465.b ##27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT00900000141067.e.b	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00860000136094	ENSGT00980000198488.m.a.a.a.a.k.a.d.a ##20	ENSGT00910000147395	ENSGT00980000198488.m.a.a.a.a.k.b.a.a.a ##20	ENSGT00980000198488.m.a.a.a.a.k.b.a.a.b.a.a ##20	ENSGT00980000198488.m.a.a.a.a.k.a.d.b ##20	ENSGT00980000198488.m.b.b.b ##20	ENSGT01100000263517.b.d.m.a.a.a.b.w	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.k.a #23	ENSGT01100000263548.b.a.a.a.b.a.k.b #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00390000006548.b.j.b.c	ENSGT01100000263548.b.a.a.a.b.a.l #23	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.a #27	ENSGT00940000156465.b ##27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT00900000141067.e.b	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34
Pan	ANCESTRAL SPECIES	5	ENSGT00390000001153.z #16	ENSGT00390000008126 #17	ENSGT00860000136094	ENSGT00980000198488.m.a.a.a.a.k.a.d.a ##20	ENSGT00910000147395.b	ENSGT00980000198488.m.a.a.a.a.k.b.a.a.a ##20	ENSGT00980000198488.m.a.a.a.a.k.b.a.a.b.a.a ##20	ENSGT00980000198488.m.a.a.a.a.k.a.d.b ##20	ENSGT00980000198488.m.b.b.b ##20	ENSGT00980000198488.n ##20	ENSGT00860000135184.f.a	ENSGT01100000263517.b.d.m.a.a.a.b.w	ENSGT00980000198488.m.a.a.a.a.k.b.a.b.a.a.b #20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.k.a #23	ENSGT01100000263548.b.a.a.a.b.a.k.b #23	ENSGT00910000144359 #24	ENSGT00390000006548.b.j.b.c	ENSGT01100000263548.b.a.a.a.b.a.l #23	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.a #27	ENSGT00940000156465.b ##27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT00900000141067.e.b	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34
Chimpanzee	MODERN SPECIES	19	POLR1H (ENSPTRG00000017914) #17	ENSPTRG00000046166	ENSPTRG00000051450	ENSPTRG00000046552 ##20	ENSPTRG00000017913	ENSPTRG00000017912 ##20	PATR-H (ENSPTRG00000017906) ##20	PATR-G (ENSPTRG00000017908) ##20	ENSPTRG00000043460 ##20	ENSPTRG00000046279	ENSPTRG00000034414	PATR-F (ENSPTRG00000017910) #20	ZFP57 (ENSPTRG00000017904)	MOG (ENSPTRG00000017903) #21	ENSPTRG00000050826	GABBR1 (ENSPTRG00000049937) #22	ENSPTRG00000051925 #23	ENSPTRG00000049294 #23	UBD (ENSPTRG00000017901) #24	ENSPTRG00000050839	OR2H1 (ENSPTRG00000051419) #23	OR10C1 (ENSPTRG00000017895) #25	OR11A1 (ENSPTRG00000034080) #26	ENSPTRG00000017893 #27	ENSPTRG00000044200 ##27	OR12D3 (ENSPTRG00000047098) #28	OR5V1 (ENSPTRG00000029785) #29	ENSPTRG00000043896	OR14J1 (ENSPTRG00000017891) #30	ENSPTRG00000047825 ##34	ENSPTRG00000049682 ##34
Bonobo	MODERN SPECIES	19	PPP1R11 (ENSPPAG00000042995) #16	POLR1H (ENSPPAG00000034397) #17	ENSPPAG00000007839	ENSPPAG00000033792 ##20	ENSPPAG00000004281	ENSPPAG00000000657	Papa-A (ENSPPAG00000033438) ##20	HLA-G (ENSPPAG00000031248) ##20	ENSPPAG00000038818 ##20	ENSPPAG00000027713	ENSPPAG00000038821	HLA-F (ENSPPAG00000028356) #20	ZFP57 (ENSPPAG00000026274)	MOG (ENSPPAG00000021798) #21	ENSPPAG00000037261	GABBR1 (ENSPPAG00000042582) #22	ENSPPAG00000007853 #23	ENSPPAG00000027124 #23	UBD (ENSPPAG00000005180) #24	ENSPPAG00000038862	MAS1L (ENSPPAG00000027381)	OR2H1 (ENSPPAG00000010612) #23	OR10C1 (ENSPPAG00000022808) #25	ENSPPAG00000018245 #26	ENSPPAG00000017906 #27	ENSPPAG00000017644 ##27	OR12D3 (ENSPPAG00000026156) #28	OR5V1 (ENSPPAG00000017324) #29	ENSPPAG00000039963	OR14J1 (ENSPPAG00000011799) #30	ENSPPAG00000042276 ##34
Human	MODERN SPECIES	18	TRIM39 (ENSG00000204599) #9	TRIM26 (ENSG00000234127) #10	TRIM15 (ENSG00000204610) #11	TRIM10 (ENSG00000204613) #12	TRIM40 (ENSG00000204614) #13	TRIM31 (ENSG00000204616) #14	RNF39 (ENSG00000204618) #15	PPP1R11 (ENSG00000204619) #16	POLR1H (ENSG00000066379) #17	HLA-A (ENSG00000206503) ##20	HLA-G (ENSG00000204632) ##20	HLA-F (ENSG00000204642) #20	ZFP57 (ENSG00000204644)	MOG (ENSG00000204655) #21	OR2H2 (ENSG00000204657) #23	GABBR1 (ENSG00000204681) #22	UBD (ENSG00000213886) #24	OR2I1P (ENSG00000237988) ##35	MAS1L (ENSG00000204687)	OR2H1 (ENSG00000204688) #23	OR10C1 (ENSG00000206474) #25	OR11A1 (ENSG00000204694) #26	OR12D1 (ENSG00000251608)	OR12D2 (ENSG00000280236)	OR12D3 (ENSG00000112462) #28	OR5V1 (ENSG00000243729) #29	OR14J1 (ENSG00000204695) #30	OR2J2 (ENSG00000204700) #33	OR2J3 (ENSG00000204701) #32	OR2J1 (ENSG00000204702) #33	OR2B3 (ENSG00000204703) #34
Gorilla	MODERN SPECIES	19	TRIM40 (ENSGGOG00000004900) #13	TRIM31 (ENSGGOG00000015219) #14	RNF39 (ENSGGOG00000027860) #15	PPP1R11 (ENSGGOG00000026830) #16	POLR1H (ENSGGOG00000026358) #17	ENSGGOG00000043114	ENSGGOG00000038876 ##20	ENSGGOG00000039717	ENSGGOG00000005772 ##20	HLA-G (ENSGGOG00000008012) ##20	ENSGGOG00000037193 ##20	ENSGGOG00000041980	ZFP57 (ENSGGOG00000016915)	MOG (ENSGGOG00000016910) #21	ENSGGOG00000043299	GABBR1 (ENSGGOG00000004472) #22	ENSGGOG00000001168 #23	ENSGGOG00000044199 #23	UBD (ENSGGOG00000008729) #24	ENSGGOG00000041540	OR2H1 (ENSGGOG00000036921) #23	ENSGGOG00000023956 #27	ENSGGOG00000008752 ##27	OR12D3 (ENSGGOG00000027890) #28	OR5V1 (ENSGGOG00000007846) #29	ENSGGOG00000023765	OR14J1 (ENSGGOG00000024507) #30	ENSGGOG00000026870 ##34	OR2J2 (ENSGGOG00000036189) #33	OR2J3 (ENSGGOG00000036403) #32	OR2J1 (ENSGGOG00000038347) #33
Orangutan	MODERN SPECIES	19	TRIM40 (ENSPPYG00000017200) #13	TRIM31 (ENSPPYG00000017199) #14	RNF39 (ENSPPYG00000017198) #15	PPP1R11 (ENSPPYG00000039718) #16	POLR1H (ENSPPYG00000017196) #17	ENSPPYG00000038709	ENSPPYG00000016402 ##20	ENSPPYG00000016398 ##20	ENSPPYG00000025931 ##20	HLA-G (ENSPPYG00000016407) ##20	ENSPPYG00000033405 ##20	ENSPPYG00000016399	ENSPPYG00000017232 #20	ZFP57 (ENSPPYG00000016397)	MOG (ENSPPYG00000016396) #21	GABBR1 (ENSPPYG00000016395) #22	OR2H2 (ENSPPYG00000016394) #23	UBD (ENSPPYG00000031689) #24	OR2I1P (ENSPPYG00000016392) ##35	OR10C1 (ENSPPYG00000016390) #25	OR11A1 (ENSPPYG00000016389) #26	OR5V1 (ENSPPYG00000016387) #29	OR14J1 (ENSPPYG00000016386) #30	OR2J2 (ENSPPYG00000033116) #33	OR2J3 (ENSPPYG00000039485) #32	OR2J1 (ENSPPYG00000030231) #33	OR2B3 (ENSPPYG00000017231) #34	ZNF311 (ENSPPYG00000016380) #36	TRIM27 (ENSPPYG00000016378)	SCAND3 (ENSPPYG00000016376)	GPX5 (ENSPPYG00000033747)
Gibbon	MODERN SPECIES	10	ENSNLEG00000005023 ##20	TRIM26 (ENSNLEG00000005001) #10	TRIM15 (ENSNLEG00000004987) #11	TRIM10 (ENSNLEG00000004975) #12	ENSNLEG00000004972 #13	TRIM31 (ENSNLEG00000004946) #14	RNF39 (ENSNLEG00000004940) #15	PPP1R11 (ENSNLEG00000004933) #16	POLR1H (ENSNLEG00000004924) #17	ENSNLEG00000004728 ##20	ENSNLEG00000028885 ##20	ENSNLEG00000029996 #20	ZFP57 (ENSNLEG00000004723)	MOG (ENSNLEG00000004664) #21	ENSNLEG00000034442	ENSNLEG00000028679 #22	UBD (ENSNLEG00000031787) #24	ENSNLEG00000030680	ENSNLEG00000028051	ENSNLEG00000034562	OR2W1 (ENSNLEG00000019206) #35	ZNF311 (ENSNLEG00000004619) #36	TRIM27 (ENSNLEG00000004590)	SCAND3 (ENSNLEG00000004588)	GPX5 (ENSNLEG00000004583)	ENSNLEG00000031271	ZSCAN23 (ENSNLEG00000028711)	ZSCAN12 (ENSNLEG00000004573)	ZKSCAN3 (ENSNLEG00000004558)	ZSCAN31 (ENSNLEG00000004512)	PGBD1 (ENSNLEG00000036262)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000158047	ENSGT00980000198488.m.a.a.a.b #7	ENSGT00980000198488.n ##20	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000009004.ab.a.b	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359 #24
Cebidae	ANCESTRAL SPECIES	39	ENSGT00980000198488.n ##20	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00980000198488.m.a.a.a.a.k.a.b ##20	ENSGT00860000135184.f.b	ENSGT00980000198488.m.a.a.a.a.k.b.b.a.b ##20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT00940000159720	ENSGT00950000183025.a
Cebidae_a	ANCESTRAL SPECIES	93	ENSGT00940000158047	ENSGT00980000198488.m.a.a.a.b #7	ENSGT00900000140979.a.a.`b.a.o.a	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00980000198488.m.a.a.a.a.k.a.b ##20	ENSGT00550000074840.y.b.a.b	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT00950000183025.a.t.a
Bolivian squirrel monkey	MODERN SPECIES	294																GABBR1 (ENSSBOG00000022261) #22	UBD (ENSSBOG00000020273) #24	ENSSBOG00000020689	ENSSBOG00000021950	MAS1L (ENSSBOG00000036329)
Capuchin	MODERN SPECIES	440	POLR1H (ENSCCAG00000029119) #17	ENSCCAG00000037512 ##20	ENSCCAG00000030236	ENSCCAG00000037839 #20	ENSCCAG00000035451	ENSCCAG00000024925	ENSCCAG00000019819 ##20	ENSCCAG00000031464	ENSCCAG00000030847 ##20	ENSCCAG00000024286	ENSCCAG00000026148	ENSCCAG00000032961	ZFP57 (ENSCCAG00000031559)	MOG (ENSCCAG00000037313) #21	ENSCCAG00000020495	GABBR1 (ENSCCAG00000034539) #22	UBD (ENSCCAG00000032833) #24	ENSCCAG00000020518
Marmoset	MODERN SPECIES	16	TRIM26 (ENSCJAG00000047960) #10	TRIM15 (ENSCJAG00000020699) #11	TRIM10 (ENSCJAG00000020701) #12	TRIM40 (ENSCJAG00000020702) #13	RNF39 (ENSCJAG00000020706) #15	PPP1R11 (ENSCJAG00000048275) #16	POLR1H (ENSCJAG00000020719) #17	HLA-G (ENSCJAG00000043681) ##20	ENSCJAG00000072422	ENSCJAG00000019566 ##20	ENSCJAG00000085716 ##20	ENSCJAG00000043365 ##20	ENSCJAG00000080508	ENSCJAG00000015161	MOG (ENSCJAG00000043626) #21	GABBR1 (ENSCJAG00000004265) #22	ENSCJAG00000083684	ENSCJAG00000077679	DUSP22 (ENSCJAG00000017655)	IRF4 (ENSCJAG00000019524)	EXOC2 (ENSCJAG00000019533)	FOXQ1 (ENSCJAG00000041271)	FOXF2 (ENSCJAG00000038579)	GMDS (ENSCJAG00000019610)	ENSCJAG00000069598	ENSCJAG00000078701	MYLK4 (ENSCJAG00000032058)	WRNIP1 (ENSCJAG00000019628)	SERPINB1 (ENSCJAG00000041877)	SERPINB9 (ENSCJAG00000042376)	ENSCJAG00000010562
Mas night monkey	MODERN SPECIES	1184														ZFP57 (ENSANAG00000025441)	MOG (ENSANAG00000020913) #21	GABBR1 (ENSANAG00000028034) #22	UBD (ENSANAG00000023490) #24	ENSANAG00000032321	ENSANAG00000004612
Tarsier	MODERN SPECIES	7281					ENSTSYG00000036771	ENSTSYG00000010569 #8	TRIM39 (ENSTSYG00000010493) #9	TRIM26 (ENSTSYG00000007239) #10	TRIM15 (ENSTSYG00000034708) #11	TRIM10 (ENSTSYG00000011233) #12	TRIM40 (ENSTSYG00000003463) #13	PPP1R11 (ENSTSYG00000033689) #16	POLR1H (ENSTSYG00000002574) #17	ZFP57 (ENSTSYG00000002685)	MOG (ENSTSYG00000002669) #21	GABBR1 (ENSTSYG00000000397) #22	OR2H2 (ENSTSYG00000005405) #23
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000161804	ENSGT00940000158047	ENSGT00980000198488.m.a.a.a.b #7	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000158329	ENSGT00940000161804	ENSGT00940000158047	ENSGT00980000198488.m.a.a.a.b #7	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35
Mouse lemur	MODERN SPECIES	28	MRPS18B (ENSMICG00000031536)	PPP1R10 (ENSMICG00000038776)	ENSMICG00000031444	ABCF1 (ENSMICG00000014745)	PRR3 (ENSMICG00000042955)	GNL1 (ENSMICG00000014708)	ENSMICG00000028052	ENSMICG00000004749	TRIM10 (ENSMICG00000044593) #12	RNF39 (ENSMICG00000034392) #15	PPP1R11 (ENSMICG00000034291) #16	POLR1H (ENSMICG00000045696) #17	ENSMICG00000008613	ZFP57 (ENSMICG00000035396)	MOG (ENSMICG00000013337) #21	GABBR1 (ENSMICG00000001917) #22
Lemuriformes_a	ANCESTRAL SPECIES	117	ENSGT00940000158329	ENSGT00940000161804	ENSGT00940000158047	ENSGT00980000198488.m.a.a.a.b #7	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24
Greater bamboo lemur	MODERN SPECIES	22									RNF39 (ENSPSMG00000010795) #15	POLR1H (ENSPSMG00000010787) #17	ENSPSMG00000010771	PPP1R11 (ENSPSMG00000010766) #16	ENSPSMG00000010758	ZFP57 (ENSPSMG00000010755)	MOG (ENSPSMG00000010712) #21	GABBR1 (ENSPSMG00000010212) #22	OR2H2 (ENSPSMG00000009986) #23	UBD (ENSPSMG00000009976) #24	KRTAP6-1 (ENSPSMG00000009968)	KRTAP20-1 (ENSPSMG00000009957)	KRTAP20-2 (ENSPSMG00000009950)	ENSPSMG00000009935	KRTAP8-1 (ENSPSMG00000009928)	KRTAP7-1 (ENSPSMG00000009924)	KRTAP11-1 (ENSPSMG00000009919)	TIAM1 (ENSPSMG00000009838)	SOD1 (ENSPSMG00000009679)	SCAF4 (ENSPSMG00000009574)	HUNK (ENSPSMG00000009503)	ENSPSMG00000009496	MIS18A (ENSPSMG00000009489)
Coquerels sifaka	MODERN SPECIES	808														ZFP57 (ENSPCOG00000024562)	MOG (ENSPCOG00000024119) #21	GABBR1 (ENSPCOG00000020523) #22	UBD (ENSPCOG00000014755) #24	ENSPCOG00000021535 ##25
Bushbaby	MODERN SPECIES	146	ENSOGAG00000004428	HLA-E (ENSOGAG00000027556) #7	ENSOGAG00000026541	ENSOGAG00000031061	TRIM39 (ENSOGAG00000000903) #9	TRIM26 (ENSOGAG00000032939) #10	TRIM15 (ENSOGAG00000016905) #11	TRIM10 (ENSOGAG00000001602) #12	TRIM40 (ENSOGAG00000030532) #13	RNF39 (ENSOGAG00000028655) #15	PPP1R11 (ENSOGAG00000001598) #16	POLR1H (ENSOGAG00000001597) #17	ENSOGAG00000026702	ENSOGAG00000031384	MOG (ENSOGAG00000000078) #21	GABBR1 (ENSOGAG00000000076) #22	ENSOGAG00000032081	OR2H2 (ENSOGAG00000029970) #23	ENSOGAG00000030720 #24
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00980000198488.m.b.b.b ##20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263548.b.a.a.b.c.a ##34	ENSGT01050000244815.A.c.a.a.a ##25
Glires	ANCESTRAL SPECIES	5	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00980000198488.m.b.b.b ##20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263548.b.a.a.b.c.a ##34	ENSGT01050000244815.A.c.a.a.a ##25
Rodentia	ANCESTRAL SPECIES	6	ENSGT00980000198488.m.a.b.a.a.a ##20	ENSGT00980000198488.m.a.a.a.b #7	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263548.b.a.a.b.c.a ##34	ENSGT01050000244815.A.c.a.a.a ##25
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00980000198488.m.b.b.b ##20	ENSGT00980000198488.n ##20	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01050000244815.A.c.a.a.a ##25	ENSGT01100000263548.b.a.a.b.d ##34
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00980000198488.m.a.b.a.b.b ##20	ENSGT00980000198488.m.a.b.a.a.a ##20	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01050000244815.A.c.a.a.a ##25	ENSGT01100000263548.b.a.a.b.d ##34
Muroidea	ANCESTRAL SPECIES	15	ENSGT00980000198488.m.a.b.a.a.a ##20	ENSGT00980000198488.n ##20	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.a.a #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465.c #27	ENSGT00940000156465.d #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00980000198488.n ##20	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.b #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465.c #27	ENSGT00940000156465.d.b #27	ENSGT00940000156465.d.a #27	ENSGT00940000163236.a #28	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.b ##20	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.c.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.c.b ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.b ##20	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.d.a #27	ENSGT00940000156465.d.b #27	ENSGT00940000156465.c #27	ENSGT00870000136672	ENSGT00940000163236.a #28	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.b ##20	ENSGT01090000260024.A.a.a.b.b.a #29
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00980000198488.m.a.b.a.b.a.a.b ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.c.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.c.b ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.b ##20	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.d.a #27	ENSGT00940000156465.d.b #27	ENSGT00940000156465.c #27	ENSGT00870000136672	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.b ##20	ENSGT00940000163236.a #28	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.b ##20
Northern American deer mouse	MODERN SPECIES	13	ENSPEMG00000025918 ##20	ENSPEMG00000028110 ##20	Trim26 (ENSPEMG00000009213) #10	Trim15 (ENSPEMG00000023524) #11	Trim10 (ENSPEMG00000028650) #12	Trim40 (ENSPEMG00000015417) #13	Trim31 (ENSPEMG00000017383) #14	Rnf39 (ENSPEMG00000023635) #15	Ppp1r11 (ENSPEMG00000025398) #16	Polr1h (ENSPEMG00000002416) #17	ENSPEMG00000022625	ENSPEMG00000028188 ##20	ENSPEMG00000000605 ##20	H2-M5 (ENSPEMG00000023578) ##20	Mog (ENSPEMG00000023066) #21	Gabbr1 (ENSPEMG00000016774) #22	Or2h2 (ENSPEMG00000011419) #23	Or2h1 (ENSPEMG00000029879) #23	Or2h1b (ENSPEMG00000025131) #23	ENSPEMG00000026498	ENSPEMG00000029466 #23	Ubd (ENSPEMG00000004387) #24	Or2i1 (ENSPEMG00000027748) ##35	Or10c1 (ENSPEMG00000002019) #25	Or11a4 (ENSPEMG00000029681) #26	Or12d13 (ENSPEMG00000025859) #27	ENSPEMG00000027382 #27	ENSPEMG00000026651 #27	ENSPEMG00000016980	H2-M3 (ENSPEMG00000025240) ##20	Or12d17 (ENSPEMG00000003887) #28
Prairie vole	MODERN SPECIES	352	H2-Ob (ENSMOCG00000008562)	H2-Ab1 (ENSMOCG00000008439)	ENSMOCG00000013355	ENSMOCG00000017941	ENSMOCG00000019721	H2-Ea (ENSMOCG00000008786)	Btnl2 (ENSMOCG00000014437)	Btnl1 (ENSMOCG00000018715)	ENSMOCG00000011431	Rnf39 (ENSMOCG00000015333) #15	Ppp1r11 (ENSMOCG00000002207) #16	Polr1h (ENSMOCG00000008537) #17	Polr1has (ENSMOCG00000015745)	H2-M5 (ENSMOCG00000004410) ##20	Mog (ENSMOCG00000019437) #21	Gabbr1 (ENSMOCG00000003335) #22	Or2h2 (ENSMOCG00000011908) #23	Or2h1b (ENSMOCG00000012727) #23	ENSMOCG00000002199 #23	Ubd (ENSMOCG00000017880) #24	Or2i1 (ENSMOCG00000020992) ##35	Or10c1 (ENSMOCG00000005679) #25	H2-M2 (ENSMOCG00000021881) ##20	ENSMOCG00000000543 #29	Or2b4 (ENSMOCG00000005857) ##34
Cricetinae	ANCESTRAL SPECIES	53	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.d ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.c.b ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.b ##20	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465.d.a #27	ENSGT00940000156465.d.b #27	ENSGT00940000156465.c #27	ENSGT00870000136672	ENSGT00940000163236.a #28	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.b ##20	ENSGT01090000260024.A.a.a.b.b.a #29
Chinese hamster chok1gshd	MODERN SPECIES	54	ENSCGRG00001017369 ##20	ENSCGRG00001015503 ##20	ENSCGRG00001019233 ##20	Trim26 (ENSCGRG00001004414) #10	Trim15 (ENSCGRG00001013258) #11	Trim10 (ENSCGRG00001018317) #12	Trim40 (ENSCGRG00001020928) #13	Trim31 (ENSCGRG00001006008) #14	Rnf39 (ENSCGRG00001021833) #15	Ppp1r11 (ENSCGRG00001016497) #16	Polr1h (ENSCGRG00001016003) #17	Polr1has (ENSCGRG00001013477)	ENSCGRG00001014457 ##20	H2-M5 (ENSCGRG00001000094) ##20	Mog (ENSCGRG00001017417) #21	Gabbr1 (ENSCGRG00001020413) #22	Or2h2 (ENSCGRG00001008432) #23	Or2h1 (ENSCGRG00001009442) #23	Or2h1b (ENSCGRG00001009964) #23	ENSCGRG00001009359 #23	Ubd (ENSCGRG00001000884) #24	Or2i1 (ENSCGRG00001019942) ##35	Or10c1 (ENSCGRG00001011439) #25	Or11a4 (ENSCGRG00001012269) #26	Or12d13 (ENSCGRG00001002283) #27	ENSCGRG00001003501 #27	ENSCGRG00001013793 #27	ENSCGRG00001008265	Or12d17 (ENSCGRG00001007577) #28	H2-M2 (ENSCGRG00001009530) ##20	ENSCGRG00001009108 #29
Golden Hamster	MODERN SPECIES	873	Rpp21 (ENSMAUG00000018282) #8	Trim39 (ENSMAUG00000004795) #9	ENSMAUG00000018352 ##20	ENSMAUG00000000050 ##20	Trim26 (ENSMAUG00000018598) #10	Trim15 (ENSMAUG00000000054) #11	Trim10 (ENSMAUG00000001938) #12	ENSMAUG00000011593 #13	Trim31 (ENSMAUG00000008163) #14	Rnf39 (ENSMAUG00000012824) #15	Ppp1r11 (ENSMAUG00000015085) #16	Polr1h (ENSMAUG00000000386) #17	Polr1has (ENSMAUG00000004062)	ENSMAUG00000006930 ##20	Mog (ENSMAUG00000011276) #21	Gabbr1 (ENSMAUG00000012954) #22	ENSMAUG00000015077 #23	Ubd (ENSMAUG00000016110) #24	Or2i1 (ENSMAUG00000016266) ##35	Or10c1 (ENSMAUG00000016183) #25	H2-M2 (ENSMAUG00000003870) ##20	ENSMAUG00000016268 #29
Murinae	ANCESTRAL SPECIES	18	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.b ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.a ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.b #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672.e.a.a	ENSGT00940000156465.d.b #27	ENSGT00870000136672.f	ENSGT00940000156465.c #27	ENSGT00870000136672.e.a.b	ENSGT00940000156465.d.a #27	ENSGT00940000163236.a #28	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.b ##20
Mus	ANCESTRAL SPECIES	16	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.a.c ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.a.c ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.b ##20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.b #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672.e.a.a	ENSGT00940000156465.d.b #27	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.b ##20	ENSGT00870000136672.e.a.b	ENSGT00940000156465.d.a #27	ENSGT00940000163236.a #28	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.b ##20	ENSGT01090000260024.A.a.a.b.b.a #29
Mus_A	ANCESTRAL SPECIES	10	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.b ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.a.d ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.b ##20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.a.a #23	ENSGT01100000263548.b.a.a.a.b.a.b.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.b #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672.e.a.a.b	ENSGT00870000136672.e.a.a.a	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.b ##20	ENSGT00870000136672.e.a.b	ENSGT00940000156465.d.b #27	ENSGT00940000156465.d.a #27	ENSGT00940000163236.a #28
Mus_B	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.a.c.b.a ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.b ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.b ##20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.a.a #23	ENSGT01100000263548.b.a.a.a.b.a.b.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.b #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672.e.a.a.b	ENSGT00870000136672.e.a.a.a	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.b ##20	ENSGT00870000136672.e.a.b	ENSGT00940000156465.d.b.c.b #27	ENSGT00940000156465.d.b.c.a #27	ENSGT00940000156465.d.a #27
Mouse	MODERN SPECIES	8	H2-M10.5 (ENSMUSG00000037246) ##20	H2-M10.6 (ENSMUSG00000037130) ##20	Trim26 (ENSMUSG00000024457) #10	Trim15 (ENSMUSG00000050747) #11	Trim10 (ENSMUSG00000073400) #12	Trim40 (ENSMUSG00000073399) #13	Trim31 (ENSMUSG00000058063) #14	Rnf39 (ENSMUSG00000036492) #15	Ppp1r11 (ENSMUSG00000036398) #16	Polr1h (ENSMUSG00000036315) #17	Polr1has (ENSMUSG00000036214)	2410137M14Rik (ENSMUSG00000064308) ##20	H2-M5 (ENSMUSG00000024459) ##20	Zfp57 (ENSMUSG00000036036)	Mog (ENSMUSG00000076439) #21	Gabbr1 (ENSMUSG00000024462) #22	Or2h2 (ENSMUSG00000056600) #23	Or2h1 (ENSMUSG00000095377) #23	Or2h2c (ENSMUSG00000096477) #23	Or2h1b (ENSMUSG00000091601) #23	Or2h2b-ps1 (ENSMUSG00000090556) #23	Ubd (ENSMUSG00000035186) #24	Or2i1 (ENSMUSG00000043827) ##35	Or10c1 (ENSMUSG00000049561) #25	Or11a4 (ENSMUSG00000064121) #26	Or1o2 (ENSMUSG00000058802)	Or1o3 (ENSMUSG00000063660)	H2-M3 (ENSMUSG00000016206) ##20	Or1o4 (ENSMUSG00000061972)	Or12d12 (ENSMUSG00000092077) #27	Or12d2 (ENSMUSG00000091531) #27
Mus_C	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.a.a.b.a.d ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.a ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.b ##20	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.b ##20	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.a.b #23	ENSGT01100000263548.b.a.a.a.b.a.a.a #23	ENSGT01100000263548.b.a.a.a.b.a.b.b #23	ENSGT01100000263548.b.a.a.a.b.a.b.a.b #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672.e.a.a.b	ENSGT00870000136672.e.a.a.a	ENSGT00980000198488.m.a.b.a.b.a.b.b.a.a.b ##20	ENSGT00870000136672.e.a.b	ENSGT00940000156465.d.a #27	ENSGT00940000156465.c.c.b #27	ENSGT00940000156465.c.d #27
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0022463 ##20	MGP_SPRETEiJ_G0022464 ##20	Trim26 (MGP_SPRETEiJ_G0022465) #10	Trim15 (MGP_SPRETEiJ_G0022466) #11	Trim10 (MGP_SPRETEiJ_G0022467) #12	Trim40 (MGP_SPRETEiJ_G0022468) #13	Trim31 (MGP_SPRETEiJ_G0022469) #14	Rnf39 (MGP_SPRETEiJ_G0022470) #15	MGP_SPRETEiJ_G0022471 #16	Polr1h (MGP_SPRETEiJ_G0022472) #17	MGP_SPRETEiJ_G0022473	2410137M14Rik (MGP_SPRETEiJ_G0022474) ##20	H2-M5 (MGP_SPRETEiJ_G0022475) ##20	Zfp57 (MGP_SPRETEiJ_G0022476)	Mog (MGP_SPRETEiJ_G0022477) #21	Gabbr1 (MGP_SPRETEiJ_G0022478) #22	Or2h2 (MGP_SPRETEiJ_G0022479) #23	MGP_SPRETEiJ_G0022480 #23	Or2h1 (MGP_SPRETEiJ_G0022481) #23	MGP_SPRETEiJ_G0022482 #23	Ubd (MGP_SPRETEiJ_G0022483) #24	Or2i1 (MGP_SPRETEiJ_G0022484) ##35	Or10c1 (MGP_SPRETEiJ_G0022485) #25	Or11a4 (MGP_SPRETEiJ_G0022486) #26	H2-M3 (MGP_SPRETEiJ_G0022487) ##20	MGP_SPRETEiJ_G0022488	MGP_SPRETEiJ_G0022489 #27	MGP_SPRETEiJ_G0022490 #27	MGP_SPRETEiJ_G0022491 #27	MGP_SPRETEiJ_G0022492	Or12d17 (MGP_SPRETEiJ_G0022493) #28
Steppe mouse	MODERN SPECIES	2571	H2-M10.6 (ENSMSIG00000017431) ##20	Trim26 (ENSMSIG00000017185) #10	Trim15 (ENSMSIG00000017136) #11	Trim10 (ENSMSIG00000017115) #12	Trim40 (ENSMSIG00000017088) #13	Trim31 (ENSMSIG00000017054) #14	Rnf39 (ENSMSIG00000017038) #15	Ppp1r11 (ENSMSIG00000017013) #16	Polr1h (ENSMSIG00000016989) #17	Polr1has (ENSMSIG00000016962)	2410137M14Rik (ENSMSIG00000016936) ##20	ENSMSIG00000015474 ##20	H2-M5 (ENSMSIG00000015441) ##20	Zfp57 (ENSMSIG00000015413)	Mog (ENSMSIG00000015347) #21	Gabbr1 (ENSMSIG00000015270) #22	Or2h2 (ENSMSIG00000015263) #23
Ryukyu mouse	MODERN SPECIES	8	H2-M10.4 (MGP_CAROLIEiJ_G0021551) ##20	H2-M11 (MGP_CAROLIEiJ_G0021552) ##20	Trim26 (MGP_CAROLIEiJ_G0021553) #10	Trim15 (MGP_CAROLIEiJ_G0021554) #11	Trim10 (MGP_CAROLIEiJ_G0021555) #12	Trim40 (MGP_CAROLIEiJ_G0021556) #13	Trim31 (MGP_CAROLIEiJ_G0021557) #14	Rnf39 (MGP_CAROLIEiJ_G0021558) #15	Ppp1r11 (MGP_CAROLIEiJ_G0021559) #16	Polr1h (MGP_CAROLIEiJ_G0021560) #17	MGP_CAROLIEiJ_G0021561	MGP_CAROLIEiJ_G0021562	H2-M5 (MGP_CAROLIEiJ_G0021563) ##20	Zfp57 (MGP_CAROLIEiJ_G0021564)	Mog (MGP_CAROLIEiJ_G0021565) #21	Gabbr1 (MGP_CAROLIEiJ_G0021566) #22	Or2h2 (MGP_CAROLIEiJ_G0021567) #23	MGP_CAROLIEiJ_G0021568 #23	Or2h1 (MGP_CAROLIEiJ_G0021569) #23	MGP_CAROLIEiJ_G0021570 #23	Ubd (MGP_CAROLIEiJ_G0021571) #24	Or2i1 (MGP_CAROLIEiJ_G0021572) ##35	Or10c1 (MGP_CAROLIEiJ_G0021573) #25	Or11a4 (MGP_CAROLIEiJ_G0021574) #26	MGP_CAROLIEiJ_G0021575	MGP_CAROLIEiJ_G0021576	H2-M3 (MGP_CAROLIEiJ_G0021577) ##20	MGP_CAROLIEiJ_G0021578	MGP_CAROLIEiJ_G0021579 #27	MGP_CAROLIEiJ_G0021580 #27	MGP_CAROLIEiJ_G0021581 #27
Shrew mouse	MODERN SPECIES	9	H2-M11 (MGP_PahariEiJ_G0020549) ##20	H2-M1 (MGP_PahariEiJ_G0020550) ##20	Trim26 (MGP_PahariEiJ_G0020551) #10	Trim15 (MGP_PahariEiJ_G0020552) #11	Trim10 (MGP_PahariEiJ_G0020553) #12	Trim40 (MGP_PahariEiJ_G0020554) #13	Trim31 (MGP_PahariEiJ_G0020555) #14	Rnf39 (MGP_PahariEiJ_G0020556) #15	Ppp1r11 (MGP_PahariEiJ_G0020557) #16	Polr1h (MGP_PahariEiJ_G0020558) #17	MGP_PahariEiJ_G0020559	MGP_PahariEiJ_G0020560	H2-M5 (MGP_PahariEiJ_G0020561) ##20	Zfp57 (MGP_PahariEiJ_G0020562)	Mog (MGP_PahariEiJ_G0020563) #21	Gabbr1 (MGP_PahariEiJ_G0020564) #22	Or2h2 (MGP_PahariEiJ_G0020565) #23	MGP_PahariEiJ_G0020566 #23	MGP_PahariEiJ_G0020567 #23	MGP_PahariEiJ_G0020568 #23	Ubd (MGP_PahariEiJ_G0020569) #24	MGP_PahariEiJ_G0020570	Or10c1 (MGP_PahariEiJ_G0020571) #25	Or11a4 (MGP_PahariEiJ_G0020572) #26	MGP_PahariEiJ_G0020573 #27	MGP_PahariEiJ_G0020574 #27	MGP_PahariEiJ_G0020575 #27	Or1o1 (MGP_PahariEiJ_G0020576)	Or1o11 (MGP_PahariEiJ_G0020577)	Or12d17 (MGP_PahariEiJ_G0020578) #28	MGP_PahariEiJ_G0020579
Rat	MODERN SPECIES	12	Trim26 (ENSRNOG00000032930) #10	Trim15 (ENSRNOG00000031689) #11	Trim10 (ENSRNOG00000000782) #12	Trim40 (ENSRNOG00000000783) #13	Trim31 (ENSRNOG00000021518) #14	ENSRNOG00000067285	Rnf39 (ENSRNOG00000000781) #15	Ppp1r11 (ENSRNOG00000000780)	Polr1h (ENSRNOG00000000779) #17	ENSRNOG00000064048	Znrd1as1 (ENSRNOG00000000778)	RT1-M6-2 (ENSRNOG00000040052) ##20	RT1-M5 (ENSRNOG00000033136) ##20	Zfp57 (ENSRNOG00000022730)	Mog (ENSRNOG00000000775) #21	Gabbr1 (ENSRNOG00000000774) #22	Or2h2 (ENSRNOG00000043481) #23	Or2h1 (ENSRNOG00000065272) #23	Or2h1b (ENSRNOG00000067843) #23	AABR07044301.1 (ENSRNOG00000045658)	Or2h2c (ENSRNOG00000062729) #23	Ubd (ENSRNOG00000000768)	AC112568.1 (ENSRNOG00000000767) #24	ENSRNOG00000065111 ##35	Or10c1 (ENSRNOG00000029420) #25	Or11a4 (ENSRNOG00000000765) #26	Or1o2 (ENSRNOG00000070009)	Or1o2d-ps1 (ENSRNOG00000065421)	Or1o2e (ENSRNOG00000052839)	Or12d14c (ENSRNOG00000029883) #27	Or12d2c (ENSRNOG00000066268) #27
Upper Galilee mountains blind mole rat	MODERN SPECIES	1528															Mog (ENSNGAG00000022436) #21	Gabbr1 (ENSNGAG00000023752) #22	ENSNGAG00000011854 #23	Or2h1b (ENSNGAG00000010566) #23	Ubd (ENSNGAG00000024379) #24	ENSNGAG00000022255 ##20
Lesser Egyptian jerboa	MODERN SPECIES	220	Dhx16 (ENSJJAG00000000186)	ENSJJAG00000000398	Atat1 (ENSJJAG00000000728)	Mrps18b (ENSJJAG00000003794)	Ppp1r10 (ENSJJAG00000006676)	ENSJJAG00000010508	Prr3 (ENSJJAG00000010607)	Gnl1 (ENSJJAG00000010831)	Rpp21 (ENSJJAG00000011176) #8	Trim39 (ENSJJAG00000020240) #9	Trim26 (ENSJJAG00000020786) #10	Trim10 (ENSJJAG00000000052) #12	ENSJJAG00000000537	Rnf39 (ENSJJAG00000001427) #15	Mog (ENSJJAG00000002510) #21	Gabbr1 (ENSJJAG00000010670) #22	ENSJJAG00000013540	Or14j1 (ENSJJAG00000012525) #30	Neu1 (ENSJJAG00000015681)	Slc44a4 (ENSJJAG00000017469)	Ehmt2 (ENSJJAG00000011038)	Cfb (ENSJJAG00000020383)	Nelfe (ENSJJAG00000014005)	ENSJJAG00000015952	Dxo (ENSJJAG00000016118)	Stk19 (ENSJJAG00000016628)	C4b (ENSJJAG00000019955)	Tnxb (ENSJJAG00000011509)	Atf6b (ENSJJAG00000013700)	Prrt1 (ENSJJAG00000018708)	Ppt2 (ENSJJAG00000018803)
Kangaroo rat	MODERN SPECIES	457	Prr3 (ENSDORG00000027875)	ENSDORG00000015458 ##20	ENSDORG00000027945	Rpp21 (ENSDORG00000000655) #8	Trim39 (ENSDORG00000000653) #9	Trim26 (ENSDORG00000014023) #10	Trim15 (ENSDORG00000014021) #11	Trim10 (ENSDORG00000014020) #12	Trim40 (ENSDORG00000014019) #13	Trim31 (ENSDORG00000014016) #14	Rnf39 (ENSDORG00000012101) #15	Ppp1r11 (ENSDORG00000029191) #16	Polr1h (ENSDORG00000004338) #17	Polr1has (ENSDORG00000004337)	Mog (ENSDORG00000003556) #21	Gabbr1 (ENSDORG00000004559) #22	ENSDORG00000028203 ##35	Or10c1 (ENSDORG00000025973) #25	Or11a4 (ENSDORG00000009035) #26	ENSDORG00000009036	ENSDORG00000013846 #27	ENSDORG00000009849 #29	Or14j1 (ENSDORG00000005943) #30	ENSDORG00000025788 #33	ENSDORG00000027807 #35	ENSDORG00000029312 #33	ENSDORG00000024536 #33	ENSDORG00000025408	ENSDORG00000029336 #35	ENSDORG00000023272 #35	ENSDORG00000028763 #35
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00980000198488.m.a.a.a.b #7	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263548.b.a.a.b.c.a ##34
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000161804	ENSGT00940000158047	ENSGT00980000198488.m.a.a.a.b #7	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00940000161804	ENSGT00940000158047	ENSGT00980000198488.m.b.b.b.h ##20	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00940000158329	ENSGT00940000161804	ENSGT00940000158047	ENSGT00980000198488.m.a.b.a.b.b ##20	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24
Long-tailed chinchilla	MODERN SPECIES	290	PPP1R10 (ENSCLAG00000002371)	ABCF1 (ENSCLAG00000003440)	PRR3 (ENSCLAG00000003296)	GNL1 (ENSCLAG00000012557)	ENSCLAG00000017247 ##20	ENSCLAG00000011335 ##20	RPP21 (ENSCLAG00000010598) #8	TRIM39 (ENSCLAG00000003141) #9	TRIM26 (ENSCLAG00000002373) #10	ENSCLAG00000002056 #11	TRIM10 (ENSCLAG00000004129) #12	TRIM40 (ENSCLAG00000003556) #13	PPP1R11 (ENSCLAG00000003948) #16	POLR1H (ENSCLAG00000003830) #17	MOG (ENSCLAG00000003415) #21	GABBR1 (ENSCLAG00000006316) #22	OR2H1 (ENSCLAG00000017675) #23	UBD (ENSCLAG00000004855) #24
Degu	MODERN SPECIES	432				ENSODEG00000000499 ##20	ENSODEG00000000487	ENSODEG00000000477	TRIM26 (ENSODEG00000000421) #10	ENSODEG00000000385 #11	TRIM10 (ENSODEG00000000362) #12	TRIM40 (ENSODEG00000000338) #13	RNF39 (ENSODEG00000000323) #15	ENSODEG00000000307 #16	POLR1H (ENSODEG00000000276) #17	ENSODEG00000002031	MOG (ENSODEG00000001982) #21	GABBR1 (ENSODEG00000001827) #22
Guinea pig	MODERN SPECIES	222						ENSCPOG00000002330 ##20	RPP21 (ENSCPOG00000006048) #8	TRIM39 (ENSCPOG00000039766) #9	ENSCPOG00000007659 ##20	TRIM26 (ENSCPOG00000031467) #10	TRIM10 (ENSCPOG00000000013) #12	PPP1R11 (ENSCPOG00000038043) #16	POLR1H (ENSCPOG00000002318) #17	ENSCPOG00000005900	MOG (ENSCPOG00000024872) #21	GABBR1 (ENSCPOG00000012930) #22	OR2I1P (ENSCPOG00000019686) ##35
Naked mole-rat female	MODERN SPECIES	30	PPP1R10 (ENSHGLG00000019477)	ABCF1 (ENSHGLG00000019209)	ENSHGLG00000042777 ##20	ENSHGLG00000017179	GNL1 (ENSHGLG00000017193)	ENSHGLG00000049352 #7	RPP21 (ENSHGLG00000045079) #8	TRIM39 (ENSHGLG00000017217) #9	TRIM26 (ENSHGLG00000036187) #10	TRIM10 (ENSHGLG00000019234) #12	RNF39 (ENSHGLG00000019552) #15	ENSHGLG00000019201 #16	ENSHGLG00000019393 #17	ZFP57 (ENSHGLG00000043997)	MOG (ENSHGLG00000019380) #21	GABBR1 (ENSHGLG00000019391) #22	OR2H2 (ENSHGLG00000019297) #23	ENSHGLG00000005164	ENSHGLG00000008802	ENSHGLG00000007795	UCN3 (ENSHGLG00000007149)	ENSHGLG00000006095	ENSHGLG00000039718	ENSHGLG00000018864	ENSHGLG00000018579	SDHA (ENSHGLG00000012160)	PDCD6 (ENSHGLG00000004728)	AHRR (ENSHGLG00000004877)	EXOC3 (ENSHGLG00000006821)	SLC9A3 (ENSHGLG00000008808)	TPPP (ENSHGLG00000046346)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00980000198488.m.a.b.a.a.a ##20	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.d #23	ENSGT01100000263548.b.a.a.a.b.a.c.b #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a.j ##34	ENSGT01100000263548.b.a.a.b.c.b ##34
Marmotini	ANCESTRAL SPECIES	96		ENSGT00980000198488.m.b.b.b ##20	ENSGT00980000198488.m.a.b.a.a.b.b.b.b ##20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.d #23	ENSGT01100000263548.b.a.a.a.b.a.c.b #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00940000166604	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392.a #26	ENSGT00870000136672	ENSGT00940000156465.f #27	ENSGT00980000198488.m.a.a.a.a.m.b.a.b #20	ENSGT00940000154431.f.m.a.b
Marmotini_b	ANCESTRAL SPECIES	168	ENSGT00980000198488.m.a.b.a.a.b.a.a.a.a ##20	ENSGT00980000198488.m.b.b.b ##20	ENSGT00980000198488.m.a.b.a.a.b.b.b.b ##20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a.d #23	ENSGT01100000263548.b.a.a.a.b.a.c.b #23	ENSGT00910000144359 #24	ENSGT01090000260044.A.b.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00940000166604	ENSGT00870000136672	ENSGT00940000156465.f #27	ENSGT00980000198488.m.a.a.a.a.m.b.a.b #20	ENSGT00940000154431.f.m.a.b
Arctic ground squirrel	MODERN SPECIES	661	ENSUPAG00010015541 ##20	ENSUPAG00010015481 ##20	ENSUPAG00010015396	TRIM26 (ENSUPAG00010015358) #10	TRIM15 (ENSUPAG00010015352) #11	TRIM10 (ENSUPAG00010015331) #12	TRIM40 (ENSUPAG00010015323) #13	ENSUPAG00010015289 #14	RNF39 (ENSUPAG00010015281) #15	PPP1R11 (ENSUPAG00010015270) #16	POLR1H (ENSUPAG00010015245) #17	ENSUPAG00010015233	ENSUPAG00010015224	ENSUPAG00010015219	MOG (ENSUPAG00010015182) #21	GABBR1 (ENSUPAG00010015010) #22	OR2H2 (ENSUPAG00010014998) #23
Squirrel	MODERN SPECIES	323	ENSSTOG00000015560 ##20	ENSSTOG00000021130 ##20	ENSSTOG00000023539 ##20	ENSSTOG00000025614 ##20	ENSSTOG00000019725 ##20	ENSSTOG00000031070	TRIM26 (ENSSTOG00000009252) #10	TRIM15 (ENSSTOG00000019723) #11	TRIM10 (ENSSTOG00000001960) #12	TRIM40 (ENSSTOG00000001956) #13	RNF39 (ENSSTOG00000005658) #15	PPP1R11 (ENSSTOG00000003632) #16	POLR1H (ENSSTOG00000005646) #17	ENSSTOG00000025605	MOG (ENSSTOG00000002496) #21	GABBR1 (ENSSTOG00000002478) #22	OR2H2 (ENSSTOG00000019745) #23	ENSSTOG00000034799	ENSSTOG00000026272 #23	UBD (ENSSTOG00000020158) #24	ENSSTOG00000032360	ENSSTOG00000021100 ##35	ENSSTOG00000022909	ENSSTOG00000028497	ENSSTOG00000027804 #27	ENSSTOG00000019731 ##34	ENSSTOG00000034270 ##30	ENSSTOG00000027981 #20	ENSSTOG00000034171	ENSSTOG00000026021 ##30	ENSSTOG00000028959 #30
Alpin marmot	MODERN SPECIES	157	ENSMMMG00000024246 ##20	ENSMMMG00000023021 ##20	ENSMMMG00000022970	TRIM26 (ENSMMMG00000022953) #10	TRIM15 (ENSMMMG00000022946) #11	TRIM10 (ENSMMMG00000022943) #12	TRIM40 (ENSMMMG00000022941) #13	TRIM31 (ENSMMMG00000022938) #14	RNF39 (ENSMMMG00000022936) #15	ENSMMMG00000022932 #16	POLR1H (ENSMMMG00000022927) #17	ENSMMMG00000022924	ENSMMMG00000022922	ENSMMMG00000022916	MOG (ENSMMMG00000022902) #21	GABBR1 (ENSMMMG00000022887) #22	OR2H2 (ENSMMMG00000022882) #23	OR2H1 (ENSMMMG00000022877) #23	UBD (ENSMMMG00000022874) #24	ENSMMMG00000022865 ##35	ENSMMMG00000022859	ENSMMMG00000022858
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005010289 ##20	ENSSVLG00005010399 ##20	ENSSVLG00005010431	ENSSVLG00005010462	TRIM26 (ENSSVLG00005010640) #10	TRIM15 (ENSSVLG00005010673) #11	TRIM10 (ENSSVLG00005010771) #12	TRIM40 (ENSSVLG00005010936) #13	ENSSVLG00005011053 #14	RNF39 (ENSSVLG00005011152) #15	PPP1R11 (ENSSVLG00005011203) #16	POLR1H (ENSSVLG00005011270) #17	ENSSVLG00005011319	ENSSVLG00005011360	MOG (ENSSVLG00005011777) #21	GABBR1 (ENSSVLG00005012290) #22	OR2H2 (ENSSVLG00005012580) #23	VHL (ENSSVLG00005012601)	ENSSVLG00005012643 #23	ENSSVLG00005012672 #23	UBD (ENSSVLG00005012732) #24	OR2I1P (ENSSVLG00005010976) ##35	OR10C1 (ENSSVLG00005011012) #25	ENSSVLG00005011048	ENSSVLG00005011081	OR11A1 (ENSSVLG00005011126) #26	ENSSVLG00005011141	ENSSVLG00005011164 #27	ENSSVLG00005011222 ##30	ENSSVLG00005011287 #27	OR12D3 (ENSSVLG00005011310) #28
Lagomorpha	ANCESTRAL SPECIES	71	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT00940000163236.a #28	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263486.a.b.a.a.a.a.a.a ##35	ENSGT01100000263548.b.a.a.b.d ##34	ENSGT01100000263548.b.a.a.a.b.b ##34	ENSGT01100000263548.a.b.a #34
Rabbit	MODERN SPECIES	3	ENSOCUG00000010984 #7	ENSOCUG00000008993 #20	ENSOCUG00000023505	TRIM26 (ENSOCUG00000015700) #10	TRIM15 (ENSOCUG00000015687) #11	TRIM10 (ENSOCUG00000015679) #12	TRIM40 (ENSOCUG00000015671) #13	ENSOCUG00000015660 #14	RNF39 (ENSOCUG00000015653) #15	PPP1R11 (ENSOCUG00000015648) #16	ENSOCUG00000037845	ENSOCUG00000030630	ZFP57 (ENSOCUG00000015627)	MOG (ENSOCUG00000015616) #21	OR2H1 (ENSOCUG00000021373) #23	GABBR1 (ENSOCUG00000015575) #22	OR2H2 (ENSOCUG00000006836) #23	UBD (ENSOCUG00000028108) #24	OR10C1 (ENSOCUG00000005416) #25	OR11A1 (ENSOCUG00000011485) #26	ENSOCUG00000027532	ENSOCUG00000024164	ENSOCUG00000034065 #27	ENSOCUG00000025180 #27	OR5V1 (ENSOCUG00000001694) #29	OR12D3 (ENSOCUG00000017472) #28	OR14J1 (ENSOCUG00000007254) #30	ENSOCUG00000011394 ##34	ENSOCUG00000028081 ##34	ENSOCUG00000013888 ##35	ENSOCUG00000023234 ##34
Pika	MODERN SPECIES	4607														ZFP57 (ENSOPRG00000011798)	MOG (ENSOPRG00000011783) #21	GABBR1 (ENSOPRG00000011761) #22	ENSOPRG00000011756 #23
Tree shrew	MODERN SPECIES	5215																ENSTBEG00000004813 #22
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT01100000263517.b.d.m.a.a.a.b	ENSGT00980000198488.m.b.b.b.r ##20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157642 #22
Common shrew	MODERN SPECIES	6750																ENSSARG00000001859 #22
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT01090000260024.A.a.a.b.b.a.h #29	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a.g.b #29	ENSGT01090000260024.A.a.a.b.b.a.g.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00980000198488.m.b.b.b.r ##20	ENSGT00860000135184	ENSGT00980000198488.m.a.a.a.a.e.a #20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT01090000260024.A.a.a.b.b.a.h #29	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a.g.b #29	ENSGT01090000260024.A.a.a.b.b.a.g.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30
Suina	ANCESTRAL SPECIES	17	ENSGT00980000198488.m.a.b.a.b.b ##20	ENSGT00980000198488.m.a.a.a.a.e.a.d #20	ENSGT00860000135184	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00940000156465 #27	ENSGT01090000260024.A.a.a.b.b.a.h #29	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a.g.b #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.a.b.b ##34	ENSGT01100000263548.a.b.a #34
Pig	MODERN SPECIES	15	ENSSSCG00000041364	ENSSSCG00000062469 #20	ENSSSCG00000060989 #20	ENSSSCG00000001232	TRIM26 (ENSSSCG00000001233) #10	TRIM15 (ENSSSCG00000001235) #11	TRIM10 (ENSSSCG00000001234) #12	TRIM40 (ENSSSCG00000001236) #13	ENSSSCG00000022261 #14	RNF39 (ENSSSCG00000025208) #15	PPP1R11 (ENSSSCG00000024259) #16	POLR1H (ENSSSCG00000001245) #17	ENSSSCG00000053975	ZFP57 (ENSSSCG00000001247)	MOG (ENSSSCG00000001248) #21	GABBR1 (ENSSSCG00000001242) #22	OLF42-1 (ENSSSCG00000031213) #23	OLF42-3 (ENSSSCG00000055995) #23	UBD (ENSSSCG00000001252) #24	OR2I1P (ENSSSCG00000001253) ##35	ENSSSCG00000001254 ##34	SCAND3 (ENSSSCG00000001216)	GPX5 (ENSSSCG00000001214)	GPX6 (ENSSSCG00000001213)	ENSSSCG00000001211	ENSSSCG00000037512	ZSCAN12 (ENSSSCG00000001209)	ZSCAN31 (ENSSSCG00000025335)	PGBD1 (ENSSSCG00000001207)	ZSCAN26 (ENSSSCG00000001206)	NKAPL (ENSSSCG00000001205)
Chacoan peccary	MODERN SPECIES	782	ENSCWAG00000007406 ##20	ENSCWAG00000007511 ##20	ENSCWAG00000007957 ##20	ENSCWAG00000008041	TRIM26 (ENSCWAG00000008553) #10	TRIM15 (ENSCWAG00000008594) #11	TRIM10 (ENSCWAG00000008681) #12	TRIM40 (ENSCWAG00000008759) #13	ENSCWAG00000008812 #14	RNF39 (ENSCWAG00000008879) #15	PPP1R11 (ENSCWAG00000008953) #16	POLR1H (ENSCWAG00000008988) #17	ENSCWAG00000009031	ENSCWAG00000009044	MOG (ENSCWAG00000009092) #21	GABBR1 (ENSCWAG00000010181) #22	OR2H1 (ENSCWAG00000011015) #23	UBD (ENSCWAG00000011030) #24	OR2I1P (ENSCWAG00000011067) ##35	OR11A1 (ENSCWAG00000011098) #26	ENSCWAG00000011109 #27	ENSCWAG00000011120 ##30	ENSCWAG00000011151 ##30	ENSCWAG00000011157 #27	ENSCWAG00000011208	ENSCWAG00000011238 ##30	ENSCWAG00000011250 #27	OR5V1 (ENSCWAG00000011267) #29	OR12D3 (ENSCWAG00000007065) #28	ENSCWAG00000007077 ##28	ENSCWAG00000007091 ##35
Artiodactyla_a	ANCESTRAL SPECIES	19	ENSGT00940000154126.h #9	ENSGT00980000198488.m.a.b.a.b.b ##20	ENSGT00980000198488.m.a.b.b ##20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT01090000260024.A.a.a.b.b.a.h #29	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a.g.b #29	ENSGT01090000260024.A.a.a.b.b.a.g.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00940000154126.h #9	ENSGT00980000198488.m.a.b.a.b.b ##20	ENSGT00980000198488.m.a.b.b ##20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT01090000260024.A.a.a.b.b.a.h #29	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a.g.b #29	ENSGT01090000260024.A.a.a.b.b.a.g.a #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000158329	ENSGT00940000161804	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00940000163392 #26	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT01090000260044.A.b.a.a.a.a.b	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000163314.b	ENSGT00940000163016	ENSGT00940000162298
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000158329	ENSGT00940000161804	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT01090000260044.A.b.a.a.a.a.b	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000163314.b	ENSGT00940000163016	ENSGT00940000162298	ENSGT00940000153412.C.i.b.a	ENSGT00940000163102	ENSGT00940000159644
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000158329	ENSGT00940000161804	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT01090000260044.A.b.a.a.a.a.b	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000159644.n	ENSGT00940000163314.b	ENSGT00940000163016	ENSGT00940000162298	ENSGT00940000153412.C.i.b.a	ENSGT00940000163102	ENSGT00940000159644.m
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000158329	ENSGT00940000161804	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00940000163512 #36	ENSGT00390000003710.c.a.b.a.b	ENSGT00940000158537	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT01090000260044.A.b.a.a.a.a.b	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000159644.n	ENSGT00940000163314.b	ENSGT00940000163016	ENSGT00940000162298	ENSGT00940000153412.C.i.b.a	ENSGT00940000163102
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000161804	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00980000198488.m.a.a.a.a.f.a #20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00940000163512 #36	ENSGT00390000003710.c.a.b.a.b	ENSGT00940000158537	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT01090000260044.A.b.a.a.a.a.b	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000159644.n	ENSGT00940000163314.b	ENSGT00940000163016	ENSGT00940000162298	ENSGT00940000159644.m	ENSGT00940000163521
Beluga whale	MODERN SPECIES	79	ABCF1 (ENSDLEG00000017061)	PRR3 (ENSDLEG00000017051)	GNL1 (ENSDLEG00000017036)	RPP21 (ENSDLEG00000017021) #8	TRIM39 (ENSDLEG00000017010) #9	TRIM26 (ENSDLEG00000016995) #10	TRIM15 (ENSDLEG00000016983) #11	TRIM10 (ENSDLEG00000016977) #12	TRIM40 (ENSDLEG00000016970) #13	RNF39 (ENSDLEG00000016964) #15	PPP1R11 (ENSDLEG00000016935) #16	POLR1H (ENSDLEG00000016924) #17	ENSDLEG00000016913	ZFP57 (ENSDLEG00000016868)	MOG (ENSDLEG00000016836) #21	GABBR1 (ENSDLEG00000016804) #22	ZNF311 (ENSDLEG00000016789) #36	ENSDLEG00000016777	TRIM27 (ENSDLEG00000016761)	ENSDLEG00000016749	ENSDLEG00000016740	ENSDLEG00000016732	GPX6 (ENSDLEG00000016714)	ENSDLEG00000016548	ZSCAN23 (ENSDLEG00000016530)	ZSCAN12 (ENSDLEG00000016520)	ZSCAN31 (ENSDLEG00000016513)	PGBD1 (ENSDLEG00000016507)	ZSCAN26 (ENSDLEG00000016493)	ENSDLEG00000016485	ZKSCAN4 (ENSDLEG00000016460)
Narwhal	MODERN SPECIES	310	PRR3 (ENSMMNG00015011249)	GNL1 (ENSMMNG00015011200)	RPP21 (ENSMMNG00015011139) #8	TRIM39 (ENSMMNG00015011112) #9	ENSMMNG00015011059 #20	TRIM26 (ENSMMNG00015011016) #10	TRIM15 (ENSMMNG00015010995) #11	TRIM10 (ENSMMNG00015010964) #12	TRIM40 (ENSMMNG00015010928) #13	RNF39 (ENSMMNG00015010911) #15	PPP1R11 (ENSMMNG00015010897) #16	POLR1H (ENSMMNG00015010882) #17	ENSMMNG00015010871	ZFP57 (ENSMMNG00015010861)	MOG (ENSMMNG00015010757) #21	GABBR1 (ENSMMNG00015010624) #22	ZNF311 (ENSMMNG00015010570) #36	ENSMMNG00015010556	TRIM27 (ENSMMNG00015010478)	SCAND3 (ENSMMNG00015010414)	ENSMMNG00015010390	GPX6 (ENSMMNG00015010366)	ENSMMNG00015010351	ZSCAN23 (ENSMMNG00015010336)	ZSCAN12 (ENSMMNG00015010269)	ENSMMNG00015010251	ZSCAN31 (ENSMMNG00015010236)	PGBD1 (ENSMMNG00015010217)	ENSMMNG00015010204	ZSCAN26 (ENSMMNG00015010185)	ENSMMNG00015010164
Vaquita	MODERN SPECIES	2	PRR3 (ENSPSNG00000016053)	GNL1 (ENSPSNG00000016165)	RPP21 (ENSPSNG00000016277) #8	ENSPSNG00000016791 #20	ENSPSNG00000016817 ##20	TRIM26 (ENSPSNG00000016853) #10	TRIM15 (ENSPSNG00000016897) #11	TRIM10 (ENSPSNG00000016993) #12	TRIM40 (ENSPSNG00000017178) #13	RNF39 (ENSPSNG00000017214) #15	PPP1R11 (ENSPSNG00000017241) #16	POLR1H (ENSPSNG00000017324) #17	ENSPSNG00000017362	ZFP57 (ENSPSNG00000017378)	MOG (ENSPSNG00000017432) #21	GABBR1 (ENSPSNG00000017765) #22	ZNF311 (ENSPSNG00000018019) #36	ENSPSNG00000018092	ENSPSNG00000018129	TRIM27 (ENSPSNG00000018183)	ENSPSNG00000018246	SCAND3 (ENSPSNG00000018277)	ENSPSNG00000018329	GPX6 (ENSPSNG00000018394)	ENSPSNG00000018457	ENSPSNG00000018516	ZSCAN23 (ENSPSNG00000018576)	ZSCAN12 (ENSPSNG00000018613)	ZSCAN31 (ENSPSNG00000018660)	PGBD1 (ENSPSNG00000018697)	ZSCAN26 (ENSPSNG00000018742)
Dolphin	MODERN SPECIES	2760							TRIM15 (ENSTTRG00000008571) #11	TRIM10 (ENSTTRG00000008565) #12	TRIM40 (ENSTTRG00000008563) #13	RNF39 (ENSTTRG00000008561) #15	PPP1R11 (ENSTTRG00000008560) #16	ENSTTRG00000008558	ENSTTRG00000008556	ZFP57 (ENSTTRG00000008551)	MOG (ENSTTRG00000008544) #21	GABBR1 (ENSTTRG00000008536) #22	ZNF311 (ENSTTRG00000008522) #36	ENSTTRG00000008518	TRIM27 (ENSTTRG00000008495)
Sperm whale	MODERN SPECIES	9	RPP21 (ENSPCTG00005010985) #8	TRIM39 (ENSPCTG00005011121) #9	ENSPCTG00005011158	ENSPCTG00005011210 ##20	ENSPCTG00005012018 #20	ENSPCTG00005012773	ENSPCTG00005012806	TRIM26 (ENSPCTG00005012863) #10	TRIM10 (ENSPCTG00005012936) #12	RNF39 (ENSPCTG00005013178) #15	PPP1R11 (ENSPCTG00005013253) #16	POLR1H (ENSPCTG00005013340) #17	ENSPCTG00005013381	ZFP57 (ENSPCTG00005013408)	MOG (ENSPCTG00005013629) #21	GABBR1 (ENSPCTG00005014116) #22	OR2H1 (ENSPCTG00005014455) #23	ENSPCTG00005014815	ENSPCTG00005014966	ENSPCTG00005015027 #27	OR5V1 (ENSPCTG00005015087) #29	ZNF311 (ENSPCTG00005015286) #36	ENSPCTG00005015392	TRIM27 (ENSPCTG00005015432)	ZBED9 (ENSPCTG00005015560)	GPX5 (ENSPCTG00005015610)	GPX6 (ENSPCTG00005015724)	ENSPCTG00005015830	ZSCAN23 (ENSPCTG00005015995)	ZSCAN12 (ENSPCTG00005016038)	ZSCAN31 (ENSPCTG00005016126)
Blue whale	MODERN SPECIES	2	TRIM39 (ENSBMSG00010010641) #9	ENSBMSG00010009436 ##20	ENSBMSG00010009225 ##20	ENSBMSG00010009182 #20	TRIM26 (ENSBMSG00010009173) #10	TRIM15 (ENSBMSG00010009161) #11	TRIM10 (ENSBMSG00010009139) #12	TRIM40 (ENSBMSG00010009112) #13	ENSBMSG00010009093 #14	PPP1R11 (ENSBMSG00010009068) #16	RNF39 (ENSBMSG00010009057) #15	POLR1H (ENSBMSG00010009051) #17	ENSBMSG00010009043	ZFP57 (ENSBMSG00010009030)	MOG (ENSBMSG00010008856) #21	GABBR1 (ENSBMSG00010008665) #22	OR2H1 (ENSBMSG00010008633) #23	UBD (ENSBMSG00010008628) #24	OR2I1P (ENSBMSG00010008623) ##35	OR11A1 (ENSBMSG00010008601) #26	ENSBMSG00010008595 #27	ENSBMSG00010008565 ##34	ENSBMSG00010008559 ##34	OR5V1 (ENSBMSG00010008528) #29	ENSBMSG00010008517 ##25	ZNF311 (ENSBMSG00010008499) #36	ENSBMSG00010008490	ENSBMSG00010008471	TRIM27 (ENSBMSG00010008454)	SCAND3 (ENSBMSG00010008430)	GPX5 (ENSBMSG00010008416)
Pecora	ANCESTRAL SPECIES	21	ENSGT00980000198488.m.a.a.a.a.e.a.b.a.b.a.a #20	ENSGT00860000135184	ENSGT00980000198488.m.a.a.a.a.e.a.a.a.a.b #20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359.c.b #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672.d.b	ENSGT00940000156465.q.a #27	ENSGT00940000162974.k.a.c	ENSGT00940000156465.q.b #27	ENSGT00870000136672.d.a	ENSGT00940000156465.r.a.b #27	ENSGT00940000162974.k.a.d	ENSGT00940000156465.r.a.a #27	ENSGT01090000260024.A.a.a.b.b.a.h #29
Percora_a	ANCESTRAL SPECIES	12	ENSGT00980000198488.m.a.a.a.a.e.a.b.a.b.a.a #20	ENSGT00860000135184	ENSGT00980000198488.m.a.a.a.a.e.a.a.a.a.b #20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359.c.b #24	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359.c.a #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672.d.b	ENSGT00940000156465.q.a #27	ENSGT00870000136672.d.a	ENSGT00940000156465.r.a.b #27	ENSGT00870000136672.c	ENSGT00940000156465.r.a.a #27	ENSGT01090000260024.A.a.a.b.b.a.h #29	ENSGT00940000163236.a #28
Bovidae	ANCESTRAL SPECIES	13	ENSGT00980000198488.m.a.a.a.a.e.a.b.a.b.a.a #20	ENSGT00860000135184	ENSGT00980000198488.m.a.a.a.a.e.a.a.a.a.b #20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359.c.b #24	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359.c.a #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392.d #26	ENSGT00940000163392.c #26	ENSGT00870000136672.d.b	ENSGT00940000156465.q.a #27	ENSGT00870000136672.d.a	ENSGT00940000156465.r.a.b #27	ENSGT00870000136672.c	ENSGT00940000162974.k.a.c.a	ENSGT00940000156465.r.b #27
Caprinae	ANCESTRAL SPECIES	16	ENSGT00980000198488.m.a.b.a.b.b ##20	ENSGT00980000198488.m.a.a.a.a.e.a.a.b.a.b.a.b #20	ENSGT00980000198488.m.a.a.a.a.e.a.a.b.a.b.a.a #20	ENSGT00860000135184	ENSGT00980000198488.m.a.a.a.a.e.a.a.a.a.b #20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00940000163392.d #26	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359.c.a #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00940000166604	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392.c #26	ENSGT00940000156465.q.a #27	ENSGT00940000162974.k.a.c.a	ENSGT00940000156465.r.b #27	ENSGT00870000136672.d.a	ENSGT00940000156465.q.b.a #27	ENSGT00940000156465.r.a.b #27	ENSGT00940000163236.a #28	ENSGT00940000163236.b.c.a ##28
Rambouillet Sheep	MODERN SPECIES	12	ENSOARG00020013010	ENSOARG00020013076	ENSOARG00020013189 #20	ENSOARG00020014030	ENSOARG00020014093	ENSOARG00020014111 #10	TRIM15 (ENSOARG00020014157) #11	TRIM10 (ENSOARG00020014219) #12	TRIM40 (ENSOARG00020014306) #13	RNF39 (ENSOARG00020014394) #15	PPP1R11 (ENSOARG00020014538) #16	POLR1H (ENSOARG00020014614) #17	ENSOARG00020014674	ENSOARG00020014699	MOG (ENSOARG00020014782) #21	GABBR1 (ENSOARG00020015905) #22	ENSOARG00020017468 #26	ENSOARG00020017503 #23	OR2I1P (ENSOARG00020017558) ##35	ENSOARG00020017592	ENSOARG00020017616 #26	ENSOARG00020017643 #27	ENSOARG00020017665 #27	ENSOARG00020017676 #27	ENSOARG00020017692 #27	ENSOARG00020017706	ENSOARG00020017759 ##28	ENSOARG00020017789 #23	ENSOARG00020017843 #23	ENSOARG00020017861	ENSOARG00020017890 ##28
Goat	MODERN SPECIES	15	TRIM39 (ENSCHIG00000020712) #9	ENSCHIG00000024673 ##20	ENSCHIG00000018785 #20	ENSCHIG00000010779 #20	ENSCHIG00000009614 #20	ENSCHIG00000019467 #20	TRIM26 (ENSCHIG00000011531) #10	TRIM15 (ENSCHIG00000022959) #11	TRIM10 (ENSCHIG00000016896) #12	TRIM40 (ENSCHIG00000023080) #13	RNF39 (ENSCHIG00000015580) #15	PPP1R11 (ENSCHIG00000018802) #16	POLR1H (ENSCHIG00000019687) #17	ZFP57 (ENSCHIG00000014114)	MOG (ENSCHIG00000011825) #21	GABBR1 (ENSCHIG00000013666) #22	ENSCHIG00000004385	ENSCHIG00000012479 #24	ENSCHIG00000012639 #23	ENSCHIG00000009184 #24	ENSCHIG00000018017	ENSCHIG00000021899 #20	ENSCHIG00000008016 #20	ENSCHIG00000025567	OR10C1 (ENSCHIG00000010372) #25	OR11A1 (ENSCHIG00000011832) #26	ENSCHIG00000016079 #27	ENSCHIG00000016632	ENSCHIG00000002951	ENSCHIG00000010119 #27	ENSCHIG00000020383
Bovinae	ANCESTRAL SPECIES	9	ENSGT00980000198488.m.a.a.a.a.e.a.b.a.b.a.a #20	ENSGT00860000135184	ENSGT00980000198488.m.a.a.a.a.e.a.a.a.a.b #20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359.c.b.b #24	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359.c.b.a #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392.d #26	ENSGT00940000163392.c #26	ENSGT00870000136672.d.b	ENSGT00940000156465.q.a.a.b #27	ENSGT00940000162974.k.a.c.b	ENSGT00870000136672.d.a.e.b	ENSGT00940000156465.r.a.b #27	ENSGT00870000136672.c	ENSGT00940000162974.k.a.c.a
Bos	ANCESTRAL SPECIES	17	ENSGT00980000198488.m.a.a.a.a.e.a.b.a.b.a.a #20	ENSGT00860000135184	ENSGT00980000198488.m.a.a.a.a.e.a.a.a.a.b #20	ENSGT00940000165871.a	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359.c.b.a.b #24	ENSGT00910000144359.c.b.b #24	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359.c.b.a.a #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392.d #26	ENSGT00940000163392.c #26	ENSGT00870000136672.d.b	ENSGT00940000156465.q.a.a.b #27	ENSGT00940000162974.k.a.c.b	ENSGT00870000136672.d.a.e.b	ENSGT00940000156465.r.a.b.d.a #27	ENSGT00870000136672.c
Bos_a	ANCESTRAL SPECIES	11	ENSGT00980000198488.m.a.b.a.b.b ##20	ENSGT00980000198488.m.a.a.a.a.e.a.a.a.a.a #20	ENSGT00980000198488.m.a.a.a.a.e.a.a.a.a.b #20	ENSGT00940000165871.a	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359.c.b.b #24	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359.c.b.a.a #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392.d #26	ENSGT00940000163392.c #26	ENSGT00870000136672.d.b	ENSGT00870000136672.d.a.e.b	ENSGT00940000156465.r.a.b.d.a #27	ENSGT00940000162974.k.a.c.a	ENSGT00940000156465.r.b.a #27	ENSGT00940000156465.q.b #27	ENSGT00940000162974.k.a.d.b
Domestic yak	MODERN SPECIES	16	TRIM39 (ENSBGRG00000022586) #9	ENSBGRG00000022538 ##20	ENSBGRG00000020812 #20	ENSBGRG00000020693	TRIM26 (ENSBGRG00000020640) #10	TRIM15 (ENSBGRG00000020573) #11	TRIM10 (ENSBGRG00000020507) #12	TRIM40 (ENSBGRG00000020418) #13	ENSBGRG00000020349 #14	RNF39 (ENSBGRG00000020316) #15	PPP1R11 (ENSBGRG00000020263) #16	POLR1H (ENSBGRG00000020207) #17	ENSBGRG00000020187	ENSBGRG00000020169	MOG (ENSBGRG00000019662) #21	GABBR1 (ENSBGRG00000018602) #22	ENSBGRG00000018541	ENSBGRG00000018510 #24	ENSBGRG00000018472 #23	OR2H1 (ENSBGRG00000018452) #23	ENSBGRG00000018419 #24	OR2I1P (ENSBGRG00000018394) ##35	OR10C1 (ENSBGRG00000018356) #25	ENSBGRG00000018293	ENSBGRG00000018245 #26	ENSBGRG00000018209 #26	ENSBGRG00000018189	ENSBGRG00000018081	ENSBGRG00000018050 #27	ENSBGRG00000018035	ENSBGRG00000018003 #27
Wild yak	MODERN SPECIES	3058										ENSBMUG00000002456 #14	RNF39 (ENSBMUG00000002474) #15	PPP1R11 (ENSBMUG00000002506) #16	POLR1H (ENSBMUG00000002527) #17	ZFP57 (ENSBMUG00000002574)	MOG (ENSBMUG00000002746) #21	GABBR1 (ENSBMUG00000002802) #22
Bos_b	ANCESTRAL SPECIES	8	ENSGT00860000135184	ENSGT00980000198488.m.a.a.a.a.e.a.a.a.a.b #20	ENSGT00940000165871.a	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT01100000263481.n.a.a.a.b.a.a.a.b.b.a.a	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359.c.b.a.b #24	ENSGT00910000144359.c.b.b #24	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359.c.b.a.a #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392.d #26	ENSGT00940000163392.c #26	ENSGT00870000136672.d.b	ENSGT00940000156465.q.a.a.b #27	ENSGT00940000162974.k.a.c.b	ENSGT00870000136672.d.a.e.b	ENSGT00940000156465.r.a.b.d.a #27	ENSGT00940000162974.k.a.d.a.a
Cow	MODERN SPECIES	15	JSP.1 (ENSBTAG00000020116) #20	ENSBTAG00000037421	BOLA (ENSBTAG00000002069) #20	TRIM26 (ENSBTAG00000035744) #10	TRIM15 (ENSBTAG00000007532) #11	TRIM10 (ENSBTAG00000007530) #12	TRIM40 (ENSBTAG00000037381) #13	TRIM31 (ENSBTAG00000004490) #14	ENSBTAG00000054439	RNF39 (ENSBTAG00000052499) #15	PPP1R11 (ENSBTAG00000032247) #16	POLR1H (ENSBTAG00000031792) #17	ENSBTAG00000054588	ZFP57 (ENSBTAG00000017836)	MOG (ENSBTAG00000017818) #21	GABBR1 (ENSBTAG00000017239) #22	ENSBTAG00000031825	ENSBTAG00000025398 #24	ENSBTAG00000052703 #24	OR2H1D (ENSBTAG00000003250) #23	OR2H1 (ENSBTAG00000027245) #23	UBD (ENSBTAG00000027246) #24	OR2I1P (ENSBTAG00000017227) ##35	OR10C1 (ENSBTAG00000045586) #25	OR11W1 (ENSBTAG00000012956)	OR11A12 (ENSBTAG00000048946) #26	OR11A1 (ENSBTAG00000053227) #26	OR1O8 (ENSBTAG00000031832)	OR12D2G (ENSBTAG00000049031) #27	ENSBTAG00000050146	OR12D2 (ENSBTAG00000053370) #27
Hybrid Bos Indicus	MODERN SPECIES	15	ENSBIXG00005014661	ENSBIXG00005002042	ENSBIXG00005014581	TRIM26 (ENSBIXG00005014482) #10	TRIM15 (ENSBIXG00005014454) #11	TRIM10 (ENSBIXG00005014432) #12	ENSBIXG00005001923 #13	ENSBIXG00005014351 #14	ENSBIXG00005014339	RNF39 (ENSBIXG00005014328) #15	PPP1R11 (ENSBIXG00005014298) #16	POLR1H (ENSBIXG00005014259) #17	ENSBIXG00005014218	ENSBIXG00005014208	MOG (ENSBIXG00005005404) #21	GABBR1 (ENSBIXG00005014036) #22	ENSBIXG00005013920 #24	ENSBIXG00005013898 #24	ENSBIXG00005001736	ENSBIXG00005013881 #23	ENSBIXG00005013856 #24	OR2I1P (ENSBIXG00005013850) ##35	OR10C1 (ENSBIXG00005013841) #25	ENSBIXG00005001723 #27	ENSBIXG00005005396 #26	ENSBIXG00005006121 #26	ENSBIXG00005013764 #27	ENSBIXG00005013759	ENSBIXG00005013739	ENSBIXG00005013710 #27	ENSBIXG00005013701
American bison	MODERN SPECIES	2169																GABBR1 (ENSBBBG00000008367) #22	ENSBBBG00000005361
Siberian musk deer	MODERN SPECIES	355	RPP21 (ENSMMSG00000006110) #8	TRIM39 (ENSMMSG00000006150) #9	ENSMMSG00000006166 ##20	ENSMMSG00000006202 #20	ENSMMSG00000006268	TRIM26 (ENSMMSG00000006313) #10	TRIM15 (ENSMMSG00000006337) #11	TRIM10 (ENSMMSG00000006380) #12	TRIM40 (ENSMMSG00000006416) #13	ENSMMSG00000006492 #14	RNF39 (ENSMMSG00000006552) #15	PPP1R11 (ENSMMSG00000006582) #16	ENSMMSG00000006613 #17	ENSMMSG00000006629	MOG (ENSMMSG00000006781) #21	GABBR1 (ENSMMSG00000007442) #22	ENSMMSG00000007594	ENSMMSG00000007637 #24	ENSMMSG00000007658 #23	ENSMMSG00000007695 #24	OR2I1P (ENSMMSG00000007722) ##35	ENSMMSG00000007740	ENSMMSG00000007754	ENSMMSG00000007776	ENSMMSG00000007803 #27	ENSMMSG00000007814 #27	ENSMMSG00000007831 #27	ENSMMSG00000007845	ENSMMSG00000007864 #27	ENSMMSG00000007875	ENSMMSG00000007913 #27
Yarkand deer	MODERN SPECIES	30	ENSCHYG00000001888 #20	ENSCHYG00000001900	TRIM26 (ENSCHYG00000001956) #10	TRIM15 (ENSCHYG00000001984) #11	TRIM10 (ENSCHYG00000002003) #12	TRIM40 (ENSCHYG00000002019) #13	ENSCHYG00000002041	ENSCHYG00000002062 #14	RNF39 (ENSCHYG00000002082) #15	PPP1R11 (ENSCHYG00000002099) #16	POLR1H (ENSCHYG00000002116) #17	ENSCHYG00000002129	ENSCHYG00000002137	ZFP57 (ENSCHYG00000002149)	MOG (ENSCHYG00000002179) #21	GABBR1 (ENSCHYG00000002285) #22	ENSCHYG00000002362	ENSCHYG00000002375 #24	ENSCHYG00000002391 #24	OR2I1P (ENSCHYG00000002407) ##35	OR10C1 (ENSCHYG00000002416) #25	ENSCHYG00000002426	ENSCHYG00000002434 #26	ENSCHYG00000002438 #26	ENSCHYG00000002445	ENSCHYG00000002455	ENSCHYG00000002463 #27	ENSCHYG00000002467	ENSCHYG00000002470	ENSCHYG00000002477	ENSCHYG00000002482 #27
Camelidae	ANCESTRAL SPECIES	73	ENSGT00940000155046.hb.a	ENSGT01100000263517.b.d.m.a.a.a.b	ENSGT00980000198488.m.a.a.a.a.f.c #20	ENSGT00980000198488.m.b.b.b.r ##20	ENSGT00980000198488.m.a.a.a.a.f.d.a.b #20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01050000244815.A.c.a.a.a.m.b ##25	ENSGT01100000263548.b.a.a.b.d ##34	ENSGT01100000263548.b.a.b ##34	ENSGT01100000263548.a.b.a.o #34	ENSGT01100000263548.a.a.b ##34	ENSGT01090000260044.A.b.a.a.b
Arabian camel	MODERN SPECIES	12	ENSCDRG00005016680 ##20	ENSCDRG00005011993 #20	ENSCDRG00005011839 #20	ENSCDRG00005011443 #20	ENSCDRG00005011399	ENSCDRG00005011289	TRIM26 (ENSCDRG00005011217) #10	TRIM15 (ENSCDRG00005011014) #11	TRIM10 (ENSCDRG00005010772) #12	TRIM40 (ENSCDRG00005010685) #13	RNF39 (ENSCDRG00005010648) #15	PPP1R11 (ENSCDRG00005010594) #16	POLR1H (ENSCDRG00005010526) #17	ZFP57 (ENSCDRG00005010482)	MOG (ENSCDRG00005010176) #21	GABBR1 (ENSCDRG00005009704) #22	OR2H1 (ENSCDRG00005009486) #23	ENSCDRG00005009457 #23	UBD (ENSCDRG00005009404) #24	OR10C1 (ENSCDRG00005009167) #25	OR11A1 (ENSCDRG00005009151) #26	ENSCDRG00005009122 #27	OR12D3 (ENSCDRG00005009002) #28	OR14J1 (ENSCDRG00005008911) #30	ENSCDRG00005008887 ##34	ENSCDRG00005008863 ##34	ENSCDRG00005008843 ##25	ENSCDRG00005006457 ##34	ENSCDRG00005006340 ##34	OR2B3 (ENSCDRG00005006328) #34	ENSCDRG00005006319 ##34
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00860000135184	ENSGT00980000198488.m.b.b.b.r ##20	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00940000163392 #26	ENSGT00940000156465 #27	ENSGT00870000136672	ENSGT01050000244828.c.b.b.a.b ##30	ENSGT01090000260024.A.a.a.b.b.a.h #29	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a.g.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263548.b.a.a.b.c.a ##34
Carnivora	ANCESTRAL SPECIES	4				ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT01090000260044.A.b.a.a.a.a.b	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000163682	ENSGT00940000163314.b	ENSGT00940000163016.c	ENSGT00940000162327	ENSGT00940000163016.d
Caniformia	ANCESTRAL SPECIES	3				ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT01050000244815.A.c.b.b #25	ENSGT01100000263486.a.b.a.a.a.b ##35	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT01090000260044.A.b.a.a.a.a.b	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000163314.b	ENSGT00940000163016.c	ENSGT00940000162327	ENSGT00940000163016.d
Caniformia_b	ANCESTRAL SPECIES	38	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263548.a.a.b ##34	ENSGT01100000263548.a.b.a #34	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT01090000260044.A.b.a.a.a.a.b	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000163314.b	ENSGT00940000163016.c	ENSGT00940000163016.d	ENSGT00940000162298	ENSGT00940000163102	ENSGT00940000159644
Ursidae	ANCESTRAL SPECIES	53	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b #33	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263548.a.a.b ##34	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT01090000260044.A.b.a.a.a.a.b	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000159644.f	ENSGT00940000163314.b	ENSGT00940000163016.c	ENSGT00940000162298	ENSGT00940000163102
Ursus	ANCESTRAL SPECIES	134	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263548.a.a.b ##34	ENSGT01050000244815.A.c.a.a.a.n ##25	ENSGT01100000263486.a.b.a.a.a.a.a.a.j ##35	ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT01100000263548.b.a.a.a.b.a #23
American black bear	MODERN SPECIES	6010															ENSUAMG00000010200	GABBR1 (ENSUAMG00000010186) #22	ENSUAMG00000010182 #23
Polar bear	MODERN SPECIES	460	ENSUMAG00000019263	ENSUMAG00000019258 ##34	OR2B3 (ENSUMAG00000019254) #34	ENSUMAG00000019250 ##25	OR10C1 (ENSUMAG00000019246) #25	ENSUMAG00000019231	TRIM26 (ENSUMAG00000019212) #10	ENSUMAG00000019201 #11	TRIM40 (ENSUMAG00000019194) #13	PPP1R11 (ENSUMAG00000019187) #16	ENSUMAG00000019182	POLR1H (ENSUMAG00000019177) #17	ENSUMAG00000019175	MOG (ENSUMAG00000019173) #21	ENSUMAG00000019162	GABBR1 (ENSUMAG00000019084) #22	UBD (ENSUMAG00000019069) #24	ENSUMAG00000019066 #23
Giant Panda	MODERN SPECIES	15						ENSAMEG00000016010 #10	ENSAMEG00000031277 #11	TRIM10 (ENSAMEG00000016029) #12	TRIM40 (ENSAMEG00000016058) #13	ENSAMEG00000023953 #15	PPP1R11 (ENSAMEG00000027618) #16	POLR1H (ENSAMEG00000016069) #17	ENSAMEG00000016073	ZFP57 (ENSAMEG00000016074)	MOG (ENSAMEG00000016076) #21	ENSAMEG00000016101 #22	ENSAMEG00000013853 #36	TRIM27 (ENSAMEG00000013863)	ENSAMEG00000029282	SCAND3 (ENSAMEG00000013874)	ENSAMEG00000024054	GPX6 (ENSAMEG00000013875)	ENSAMEG00000018707	ZSCAN23 (ENSAMEG00000028830)	ZSCAN12 (ENSAMEG00000010443)	ENSAMEG00000029671	ZSCAN31 (ENSAMEG00000010450)	ENSAMEG00000026771	NKAPL (ENSAMEG00000010463)	ENSAMEG00000003183	ZSCAN9 (ENSAMEG00000019895)
Mustelinae	ANCESTRAL SPECIES	120	ENSGT01100000263486.a.b.a.a.b #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b #33	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263548.b.a.a.a.b.b ##34	ENSGT01050000244815.A.c.a.a.a.n ##25	ENSGT01100000263486.a.b.a.a.a.a.a.a.i.a ##35	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22
Ferret	MODERN SPECIES	600			ENSMPUG00000019821 ##34	ENSMPUG00000007705 ##25	ENSMPUG00000007573 ##35	ENSMPUG00000007568	TRIM26 (ENSMPUG00000007559) #10	ENSMPUG00000007555 #11	TRIM10 (ENSMPUG00000007547) #12	RNF39 (ENSMPUG00000007529) #15	PPP1R11 (ENSMPUG00000007502) #16	POLR1H (ENSMPUG00000007474) #17	ENSMPUG00000007459	MOG (ENSMPUG00000007454) #21	ENSMPUG00000007448	GABBR1 (ENSMPUG00000007428) #22
American mink	MODERN SPECIES	555			OR2W1 (ENSNVIG00000011482) #35	ENSNVIG00000011475 #33	ENSNVIG00000011468 #33	ENSNVIG00000011454	ENSNVIG00000011448 ##25	TRIM26 (ENSNVIG00000011440) #10	ENSNVIG00000011364 #11	TRIM10 (ENSNVIG00000011349) #12	RNF39 (ENSNVIG00000011320) #15	PPP1R11 (ENSNVIG00000011300) #16	ZRAS1 (ENSNVIG00000011288)	ENSNVIG00000011268	MOG (ENSNVIG00000011210) #21	GABBR1 (ENSNVIG00000011124) #22
Canidae	ANCESTRAL SPECIES	65							ENSGT01050000244815.A.c.a.a.a.m.b ##25	ENSGT00940000158668.c #10	ENSGT00940000161525 #12	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT01050000244815.A.c.b.b #25	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263486.a.b.a.a.b #35	ENSGT01100000263486.a.b.a.a.a.b ##35	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000159644.d	ENSGT00940000163314.b	ENSGT00940000162327
Canis_lupus	ANCESTRAL SPECIES	36							ENSGT01050000244815.A.c.a.a.a.m.b ##25	ENSGT00940000158668.c #10	ENSGT00940000161525 #12	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01050000244815.A.c.b.b #25	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263486.a.b.a.a.b #35	ENSGT01100000263486.a.b.a.a.a.b ##35	ENSGT00940000163512 #36	ENSGT00940000158537	ENSGT00940000158890.p.a.e	ENSGT00940000160807	ENSGT00940000163329	ENSGT00940000161098	ENSGT00940000162869	ENSGT00940000163105	ENSGT00940000159644.d	ENSGT00940000163314.b	ENSGT00940000162327
Dog	MODERN SPECIES	28							ENSCAFG00845024616 ##25	ENSCAFG00845024497 #10	ENSCAFG00845024411 #12	RNF39 (ENSCAFG00845024143) #15	PPP1R11 (ENSCAFG00845019663) #16	ENSCAFG00845019593 #17	ENSCAFG00845019557	ENSCAFG00845019531	MOG (ENSCAFG00845019151) #21	GABBR1 (ENSCAFG00845018375) #22	OR10C1 (ENSCAFG00845018070) #25	OR14J1 (ENSCAFG00845018046) #30	OR2W1 (ENSCAFG00845018013) #35	ENSCAFG00845017982	OR2AD2 (ENSCAFG00845017963) ##35	ZNF311 (ENSCAFG00845017875) #36	ENSCAFG00845017947	ENSCAFG00845017842	TRIM27 (ENSCAFG00845017678)	ENSCAFG00845017573	ENSCAFG00845017547	SCAND3 (ENSCAFG00845017503)	GPX5 (ENSCAFG00845017417)	GPX6 (ENSCAFG00845017348)	ZSCAN23 (ENSCAFG00845017199)
Dingo	MODERN SPECIES	105							ENSCAFG00020003250 ##25	TRIM26 (ENSCAFG00020003237) #10	TRIM10 (ENSCAFG00020003231) #12	RNF39 (ENSCAFG00020003226) #15	PPP1R11 (ENSCAFG00020003217) #16	ENSCAFG00020003212 #17	ENSCAFG00020003209	ENSCAFG00020003206	MOG (ENSCAFG00020003167) #21	GABBR1 (ENSCAFG00020003153) #22	OR10C1 (ENSCAFG00020003151) #25	OR14J1 (ENSCAFG00020003149) #30	OR2W1 (ENSCAFG00020003146) #35	ENSCAFG00020003142	ENSCAFG00020003139 ##35	ENSCAFG00020003136 #36	TRIM27 (ENSCAFG00020003116)	ENSCAFG00020003111	SCAND3 (ENSCAFG00020003107)	ENSCAFG00020003096	GPX6 (ENSCAFG00020003059)	ZSCAN23 (ENSCAFG00020003049)	ZSCAN12 (ENSCAFG00020003048)	ENSCAFG00020003005	ZSCAN31 (ENSCAFG00020002994)
Red fox	MODERN SPECIES	298						ENSVVUG00000002074	ENSVVUG00000002059 ##25	TRIM26 (ENSVVUG00000002033) #10	TRIM10 (ENSVVUG00000002005) #12	RNF39 (ENSVVUG00000001978) #15	PPP1R11 (ENSVVUG00000001927) #16	ZNRD1 (ENSVVUG00000001912) #17	ENSVVUG00000001896	ENSVVUG00000001887	MOG (ENSVVUG00000001876) #21	GABBR1 (ENSVVUG00000001839) #22	ENSVVUG00000001821 #23	OR10C1 (ENSVVUG00000001814) #25	OR14J1 (ENSVVUG00000001808) #30	OR2W1 (ENSVVUG00000001802) #35
Felidae	ANCESTRAL SPECIES	30								ENSGT00940000158668.c #10	ENSGT00940000161525 #12	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT00940000163392 #26	ENSGT00940000156465 #27	ENSGT00870000136672	ENSGT01090000260024.A.a.a.b.b.a.g.a.b #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT00390000015052.i.a.gb.b	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263486.a.b.a.a.a.a.a.a ##35	ENSGT01050000244815.A.c.a.a.a.m.a ##25	ENSGT01100000263548.b.a.b ##34	ENSGT01100000263486.a.b.a.a.b.f #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.k.a.a #33	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.k.a.b #33	ENSGT01100000263486.a.b.a.a.a.b.k.a.a ##35
Cat	MODERN SPECIES	236								TRIM26 (ENSFCAG00000040621) #10	TRIM10 (ENSFCAG00000032671) #12	RNF39 (ENSFCAG00000045253) #15	ENSFCAG00000036152	POLR1H (ENSFCAG00000013590) #17	ENSFCAG00000051911	ENSFCAG00000046270	MOG (ENSFCAG00000023986) #21	GABBR1 (ENSFCAG00000019029) #22	UBD (ENSFCAG00000047066) #24	ENSFCAG00000047736	OR11A1 (ENSFCAG00000005902) #26	ENSFCAG00000038815 #27	ENSFCAG00000003660 #27	ENSFCAG00000041160 #27	ENSFCAG00000030263	OR12D3 (ENSFCAG00000028902) #28	OR5V1 (ENSFCAG00000006817) #29	OR14J1 (ENSFCAG00000006816) #30	ENSFCAG00000024819	ENSFCAG00000030319 ##34	ENSFCAG00000026789 ##35	OR10AL40 (ENSFCAG00000022193) ##25	ENSFCAG00000024068 ##34
Panthera	ANCESTRAL SPECIES	44									ENSGT00940000158668.c #10	ENSGT00940000161525 #12	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT00940000163392 #26	ENSGT00940000156465.u.a #27	ENSGT00940000156465.u.b #27	ENSGT00940000156465.v #27	ENSGT00870000136672	ENSGT01090000260024.A.a.a.b.b.a.g.a.b #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT00390000015052.i.a.gb.b	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263486.a.b.a.a.a.a.a.a ##35	ENSGT01050000244815.A.c.a.a.a.m.a ##25	ENSGT01100000263548.b.a.b ##34	ENSGT01100000263486.a.b.a.a.b.f #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.k.a.a #33
Tiger	MODERN SPECIES	454											TRIM26 (ENSPTIG00000009454) #10	TRIM10 (ENSPTIG00000009584) #12	PPP1R11 (ENSPTIG00000009670) #16	POLR1H (ENSPTIG00000009719) #17	MOG (ENSPTIG00000009849) #21	GABBR1 (ENSPTIG00000010054) #22
Panthera_a	ANCESTRAL SPECIES	48									ENSGT00940000158668.c #10	ENSGT00940000161525 #12	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT00940000163392 #26	ENSGT00940000156465.u.a #27	ENSGT00940000156465.u.b #27	ENSGT00940000156465.v #27	ENSGT00870000136672	ENSGT01090000260024.A.a.a.b.b.a.g.a.b #29	ENSGT01090000260024.A.a.a.b.b.a.g.a.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT00390000015052.i.a.gb.b	ENSGT01100000263548.a.a.a ##34	ENSGT01050000244815.A.c.a.a.a.m.a ##25	ENSGT01100000263548.b.a.b ##34	ENSGT01100000263486.a.b.a.a.b.f #35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.b.k.a.a #33
leopard	MODERN SPECIES	266										TRIM26 (ENSPPRG00000005318) #10	TRIM10 (ENSPPRG00000005336) #12	RNF39 (ENSPPRG00000005356) #15	PPP1R11 (ENSPPRG00000005421) #16	POLR1H (ENSPPRG00000005444) #17	MOG (ENSPPRG00000005656) #21	GABBR1 (ENSPPRG00000006525) #22	UBD (ENSPPRG00000006636) #24	ENSPPRG00000011199 #26	ENSPPRG00000006649 #27	ENSPPRG00000006657 #27	ENSPPRG00000006669 #27	ENSPPRG00000011206 #27	ENSPPRG00000006684	ENSPPRG00000006695 #29
lion	DUPLICATION
lion	MODERN SPECIES	126									TRIM26 (ENSPLOG00000015579) #10	TRIM10 (ENSPLOG00000015218) #12	RNF39 (ENSPLOG00000015083) #15	ENSPLOG00000015016	POLR1H (ENSPLOG00000014970) #17	ENSPLOG00000014956	MOG (ENSPLOG00000011376) #21	GABBR1 (ENSPLOG00000011204) #22	OR11A1 (ENSPLOG00000011176) #26
lion	MODERN SPECIES	382																ENSPLOG00000019168 #22
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000154126.h #9	ENSGT00980000198488.m.a.a.b.a.a.b.c ##20	ENSGT00860000135184	ENSGT00980000198488.m.b.b.b.r ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT00940000163392 #26	ENSGT00940000156465 #27	ENSGT00870000136672	ENSGT01050000244828.c.b.b.a.b ##30	ENSGT01090000260024.A.a.a.b.b.a.h #29	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a.g.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.c.b ##34	ENSGT01100000263548.b.a.a.b.c.a ##34
Equus	ANCESTRAL SPECIES	10	ENSGT00980000198488.m.a.a.b.a.a.b.c.a.a ##20	ENSGT00860000135184.d.a.b	ENSGT00860000135184.d.b.b	ENSGT00980000198488.m.b.b.b.r ##20	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359.g #24	ENSGT00940000163392 #26	ENSGT00940000156465.s.b.a #27	ENSGT01050000244828.c.b.b.a.b.m ##30	ENSGT00940000156465.t #27	ENSGT00940000156465.s.a.b #27	ENSGT00870000136672	ENSGT01050000244828.c.b.b.a.b.n ##30	ENSGT01090000260024.A.a.a.b.b.a.h #29	ENSGT00940000163236.a #28	ENSGT00940000163236.b ##28	ENSGT01090000260024.A.a.a.b.b.a.g.a #29	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34
Horse	MODERN SPECIES	12	ENSECAG00000034339 ##20	ENSECAG00000030648	ENSECAG00000054624	TRIM26 (ENSECAG00000016932) #10	TRIM15 (ENSECAG00000015028) #11	TRIM10 (ENSECAG00000001467) #12	TRIM40 (ENSECAG00000023568) #13	ENSECAG00000029067 #14	RNF39 (ENSECAG00000018987) #15	PPP1R11 (ENSECAG00000018417)	POLR1H (ENSECAG00000015919) #17	ENSECAG00000045326	ENSECAG00000013642	ZFP57 (ENSECAG00000013344)	MOG (ENSECAG00000024468) #21	GABBR1 (ENSECAG00000009175) #22	OR2H1 (ENSECAG00000030096) #23	OR2H1F (ENSECAG00000039940) #23	OR2H1E (ENSECAG00000030050) #23	UBD (ENSECAG00000006853) #24	OR2I1P (ENSECAG00000047380) ##35	OR12D2L (ENSECAG00000035536) #27	OR14J13 (ENSECAG00000029198) ##30	OR12D2K (ENSECAG00000038944) #27	OR12D2J (ENSECAG00000005780) #27	OR1O8 (ENSECAG00000037800)	OR1O9 (ENSECAG00000038171)	OR14J14 (ENSECAG00000037898) ##30	OR11W2 (ENSECAG00000040272)	ENSECAG00000027758 ##34	OR14J1 (ENSECAG00000005514) #30
Donkey	MODERN SPECIES	28	ENSEASG00005027303	ENSEASG00005015476 ##20	ENSEASG00005028930	TRIM26 (ENSEASG00005009045) #10	TRIM15 (ENSEASG00005009044) #11	TRIM10 (ENSEASG00005009040) #12	TRIM40 (ENSEASG00005009034) #13	ENSEASG00005009028 #14	RNF39 (ENSEASG00005036619) #15	PPP1R11 (ENSEASG00005028988) #16	POLR1H (ENSEASG00005009017) #17	ENSEASG00005031635	ENSEASG00005009015	ZFP57 (ENSEASG00005036659)	MOG (ENSEASG00005026201) #21	GABBR1 (ENSEASG00005008692) #22	ENSEASG00005036216 #23	ENSEASG00005027492 #23	OR2H1 (ENSEASG00005024382) #23	ENSEASG00005027013 #24	ENSEASG00005032332 ##35	ENSEASG00005008647 #27	ENSEASG00005029259 #26	ENSEASG00005008653 #24	ENSEASG00005033654 #26	ENSEASG00005025813 #27	ENSEASG00005023782 #27	ENSEASG00005024456 #26	ENSEASG00005037678 #27	ENSEASG00005030724 ##30	ENSEASG00005034614 #27
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00940000159263	ENSGT00940000158329	ENSGT00940000161804	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT00940000158537	ENSGT00940000164550	ENSGT00940000161098	ENSGT00940000162869
Megabat	MODERN SPECIES	3254											RNF39 (ENSPVAG00000008332) #15	PPP1R11 (ENSPVAG00000008330) #16	POLR1H (ENSPVAG00000008329) #17	ZFP57 (ENSPVAG00000008327)	MOG (ENSPVAG00000008326) #21	GABBR1 (ENSPVAG00000008325) #22
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00940000159263	ENSGT00940000158329	ENSGT00940000161804	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h #9	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT00940000158537	ENSGT00940000164550	ENSGT00940000161098	ENSGT00940000162869
Greater horseshoe bat	MODERN SPECIES	21	TRIM39 (ENSRFEG00010003781) #9	ENSRFEG00010003773	ENSRFEG00010003766	ENSRFEG00010003760	ENSRFEG00010003734 ##20	ENSRFEG00010003710 ##20	TRIM26 (ENSRFEG00010003687) #10	TRIM15 (ENSRFEG00010003657) #11	TRIM10 (ENSRFEG00010003632) #12	TRIM40 (ENSRFEG00010003611) #13	RNF39 (ENSRFEG00010003584) #15	PPP1R11 (ENSRFEG00010003572) #16	POLR1H (ENSRFEG00010003551) #17	ZFP57 (ENSRFEG00010003536)	MOG (ENSRFEG00010003498) #21	GABBR1 (ENSRFEG00010003354) #22	ENSRFEG00010003241	UBD (ENSRFEG00010003224) #24	TRIM27 (ENSRFEG00010003135)	ENSRFEG00010003089	ENSRFEG00010003072	ENSRFEG00010003058	ENSRFEG00010003043	GPX5 (ENSRFEG00010003000)	ENSRFEG00010002973	ENSRFEG00010002960
Microbat	MODERN SPECIES	2278																GABBR1 (ENSMLUG00000000964) #22	UBD (ENSMLUG00000028231) #24
Atlantogenata	ANCESTRAL SPECIES	133				ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00940000156465 #27	ENSGT01090000260024.A.a.a.b.b.a.e.b #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34
Afrotheria	ANCESTRAL SPECIES	157				ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a.e.b #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34
Afrotheria_a	ANCESTRAL SPECIES	158				ENSGT00940000165871	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000163585 #14	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d #21	ENSGT00940000157642 #22	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00870000136672	ENSGT00940000156465 #27	ENSGT00940000163236.a #28	ENSGT01090000260024.A.a.a.b.b.a.e.b #29	ENSGT01050000244828.c.b.b.a.a.a ##30	ENSGT01050000244828.c.b.b.a.a.b #30	ENSGT01100000263548.a.a.a ##34
Hyrax	MODERN SPECIES	7138														ZFP57 (ENSPCAG00000012369)	ENSPCAG00000012251 ##21	GABBR1 (ENSPCAG00000012061) #22
Elephant	MODERN SPECIES	56				ENSLAFG00000028821 ##20	ENSLAFG00000030976	TRIM26 (ENSLAFG00000011121) #10	TRIM15 (ENSLAFG00000001203) #11	TRIM10 (ENSLAFG00000001199) #12	TRIM40 (ENSLAFG00000013364) #13	ENSLAFG00000012582 #14	RNF39 (ENSLAFG00000026684) #15	PPP1R11 (ENSLAFG00000027660) #16	POLR1H (ENSLAFG00000012576) #17	ENSLAFG00000027525	MOG (ENSLAFG00000017461) #21	GABBR1 (ENSLAFG00000017450) #22	ENSLAFG00000028740 #7	ENSLAFG00000032081 #23	ENSLAFG00000032604 #7	ENSLAFG00000006670 #23	ENSLAFG00000029198	ENSLAFG00000031929 #7	ENSLAFG00000029181 #7	UBD (ENSLAFG00000020621) #24	ENSLAFG00000030949	ENSLAFG00000020882 #26	ENSLAFG00000032026	ENSLAFG00000027364 #27	ENSLAFG00000021464 #29	ENSLAFG00000030210 ##28	ENSLAFG00000030646 #29
Xenarthra	ANCESTRAL SPECIES	1894															ENSGT00940000153527.d #21	ENSGT00940000157642 #22
Armadillo	MODERN SPECIES	4566															MOG (ENSDNOG00000045213) #21	GABBR1 (ENSDNOG00000037035) #22
Sloth	MODERN SPECIES	7573																ENSCHOG00000007072 #22
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000167799	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h.j #9	ENSGT01100000265874	ENSGT01030000234669.A.g.a	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00940000153527.d.b #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a ##35	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000166604	ENSGT00940000163392 #26	ENSGT00940000162974	ENSGT00940000163236 #28	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.d.a.a.b ##34	ENSGT01100000263486.a.b.a.a.a.a.a.a.a.b ##35	ENSGT01100000263548.b.a.a.b.d.a.a.a ##34
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000167799	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h.j #9	ENSGT01100000265874	ENSGT01030000234669.A.g.a	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00940000153527.d.b #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392 #26	ENSGT00940000162974	ENSGT00940000163236 #28	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.d.a.a.b ##34	ENSGT01100000263486.a.b.a.b.a.f ##35	ENSGT01100000263486.a.b.b ##35	ENSGT01100000263486.a.a ##35	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263548.a.b.a #34	ENSGT01100000263548.b.a.a.a.b.b ##34
Diprotodontia	ANCESTRAL SPECIES	42	ENSGT00940000158329	ENSGT00940000167799	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h.j #9	ENSGT01030000234669.A.g.a	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153.e #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00940000153527.d.b #21	ENSGT00940000157642 #22	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT00910000144359 #24	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392.p #26	ENSGT00940000162974	ENSGT00940000163392.o #26	ENSGT00940000163236 #28	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.d.a.a.b ##34	ENSGT01100000263548.b.a.a.a.b.b ##34	ENSGT01100000263548.a.b.a.r #34	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263486.a.a ##35	ENSGT01100000263486.a.b.b ##35	ENSGT01100000263486.a.b.a.b.a.f ##35
Diprotodontia_a	ANCESTRAL SPECIES	41	ENSGT00940000158329	ENSGT00940000167799	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00940000154126.h.j #9	ENSGT01030000234669.A.g.a	ENSGT00940000158668.c #10	ENSGT00940000162589 #11	ENSGT00940000161525 #12	ENSGT00710000106875 #13	ENSGT00940000162641 #15	ENSGT00390000001153.e #16	ENSGT00390000008126 #17	ENSGT00390000016534.A	ENSGT00940000153527.d.b.b #21	ENSGT00940000157642 #22	ENSGT00910000144359 #24	ENSGT01100000263548.b.a.a.a.b.a #23	ENSGT01050000244815.A.c.b.b #25	ENSGT00940000163392.p #26	ENSGT00940000162974.i	ENSGT00940000163392.o #26	ENSGT00940000163236 #28	ENSGT01100000263548.a.a.a ##34	ENSGT01100000263548.b.a.a.b.d.a.a.b ##34	ENSGT01100000263548.b.a.a.a.b.b ##34	ENSGT01100000263548.a.b.a.r #34	ENSGT01090000260044.A.b.a.a.b	ENSGT01100000263486.a.a ##35	ENSGT01100000263486.a.b.b ##35	ENSGT01100000263486.a.b.a.b.a.f ##35
koala	MODERN SPECIES	254	PPP1R10 (ENSPCIG00000014980)	ABCF1 (ENSPCIG00000014977)	ENSPCIG00000033469	GNL1 (ENSPCIG00000014975)	ENSPCIG00000014970	ENSPCIG00000014969	TRIM26 (ENSPCIG00000014965) #10	TRIM15 (ENSPCIG00000014962) #11	TRIM10 (ENSPCIG00000014959) #12	ENSPCIG00000014953 #13	RNF39 (ENSPCIG00000014952) #15	ENSPCIG00000036239 #16	POLR1H (ENSPCIG00000032418) #17	ENSPCIG00000014937	MOG (ENSPCIG00000014932) #21	GABBR1 (ENSPCIG00000014921) #22	UBD (ENSPCIG00000004084) #24	ENSPCIG00000036725 #23
Common wonbat	MODERN SPECIES	1047	PPP1R10 (ENSVURG00010001264)	ABCF1 (ENSVURG00010001070)	ENSVURG00010001056	GNL1 (ENSVURG00010001037)	RPP21 (ENSVURG00010000988) #8	TRIM39 (ENSVURG00010000977) #9	ENSVURG00010000962	TRIM26 (ENSVURG00010000941) #10	TRIM15 (ENSVURG00010000797) #11	TRIM10 (ENSVURG00010000760) #12	ENSVURG00010000751 #13	RNF39 (ENSVURG00010000737) #15	ENSVURG00010000720 #16	POLR1H (ENSVURG00010000703) #17	MOG (ENSVURG00010000686) #21	GABBR1 (ENSVURG00010000511) #22	ENSVURG00010000454 #23	ENSVURG00010000446 ##35	ENSVURG00010000427	ENSVURG00010000416 #25	ENSVURG00010000402 #26	ENSVURG00010000389	ENSVURG00010000382 #26	ENSVURG00010021843 ##34	ENSVURG00010021839	ENSVURG00010021833 ##34	ENSVURG00010021831 #28	ENSVURG00010021828 ##34	ENSVURG00010021824 ##34	ENSVURG00010021823 ##34	ENSVURG00010021821
Wallaby	MODERN SPECIES	10105																GABBR1 (ENSMEUG00000005244) #22
Tasmanian devil	MODERN SPECIES	3	MRPS18B (ENSSHAG00000031113)	PPP1R10 (ENSSHAG00000006485)	ABCF1 (ENSSHAG00000006333)	ENSSHAG00000031073	ENSSHAG00000028025	RPP21 (ENSSHAG00000026647) #8	TRIM39 (ENSSHAG00000021778) #9	TRIM26 (ENSSHAG00000002914) #10	TRIM15 (ENSSHAG00000002782) #11	TRIM10 (ENSSHAG00000027656) #12	PPP1R11 (ENSSHAG00000025209) #16	RNF39 (ENSSHAG00000025183) #15	POLR1H (ENSSHAG00000001554) #17	ENSSHAG00000000918	ENSSHAG00000005615 #21	ENSSHAG00000004434 #22	ENSSHAG00000001637 ##34	ENSSHAG00000004487 ##35	ENSSHAG00000001547 ##35	ENSSHAG00000024125	ENSSHAG00000029410	ENSSHAG00000026903	ENSSHAG00000000585	ENSSHAG00000026791	ENSSHAG00000022269	ENSSHAG00000025316	ENSSHAG00000000638	ENSSHAG00000025476	ENSSHAG00000027999	ENSSHAG00000012892	ENSSHAG00000012687
Opossum	MODERN SPECIES	1	ABCF1 (ENSMODG00000015953)	ENSMODG00000046965	GNL1 (ENSMODG00000015964)	RPP21 (ENSMODG00000015967) #8	TRIM39 (ENSMODG00000015977) #9	ENSMODG00000023819	TRIM26 (ENSMODG00000015993) #10	TRIM15 (ENSMODG00000016004) #11	TRIM10 (ENSMODG00000016017) #12	ENSMODG00000023828 #13	ENSMODG00000048080 #15	ENSMODG00000016021 #16	POLR1H (ENSMODG00000016023) #17	ENSMODG00000016024	MOG (ENSMODG00000016030) #21	GABBR1 (ENSMODG00000016036) #22	ENSMODG00000016043 #23	UBD (ENSMODG00000016045) #24	OR2I1P (ENSMODG00000016048) ##35	ENSMODG00000039080	ENSMODG00000016058 #25	ENSMODG00000016064	ENSMODG00000016073 #26	ENSMODG00000023830	ENSMODG00000041709	ENSMODG00000039073	ENSMODG00000038634	ENSMODG00000051036	OR12D3 (ENSMODG00000036961) #28	ENSMODG00000016109 ##34	ENSMODG00000039155 ##34
Platypus	MODERN SPECIES	88	CORO2A (ENSOANG00000004527)	ANP32B (ENSOANG00000010774)	ENSOANG00000043376 #10	ENSOANG00000011976 #10	ENSOANG00000005880 #10	ENSOANG00000050819	ENSOANG00000050734 #10	ENSOANG00000005881 #11	TRIM10 (ENSOANG00000049699) #12	RNF39 (ENSOANG00000004701) #15	ENSOANG00000041216 #16	ENSOANG00000031282 #17	MOG (ENSOANG00000042952) #21	ENSOANG00000022278	ENSOANG00000038263	GABBR1 (ENSOANG00000008238) #22	ENSOANG00000006573 #24	ENSOANG00000006574 ##35	ENSOANG00000047962	ENSOANG00000021629 #29	ENSOANG00000007481 #30	ENSOANG00000007482 #21	ENSOANG00000039191	ENSOANG00000010643	ENSOANG00000010642 ##35	ENSOANG00000011215 ##34	ENSOANG00000020799 ##35	ENSOANG00000010640 #34	ENSOANG00000007707 ##35	ENSOANG00000000246	ORNANAV1R3142 (ENSOANG00000039894)
Sauria	ANCESTRAL SPECIES	86														ENSGT00390000018500.a	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT00390000008726.h.b.f.a	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263521.a.a.b.b	ENSGT01100000263534.a.b.d	ENSGT00940000154715.a.b.a.a.b.a.a
Lepidosauria	ANCESTRAL SPECIES	167																ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT00390000008726.h.b.f.a	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263521.a.a.b.b	ENSGT01100000263534.a.b.d	ENSGT00390000018500.a
Episquamata	ANCESTRAL SPECIES	4	ENSGT00390000016233	ENSGT00390000008947	ENSGT00940000156378.b	ENSGT00640000091554	ENSGT00940000157794	ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00940000165995	ENSGT00940000166769	ENSGT00940000174128.A	ENSGT01020000230394.e.a.a.b.a.a.a	ENSGT00940000164287	ENSGT00390000003710	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT00390000008726.h.b.f.a	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263521.a.a.b.b	ENSGT01100000263534.a.b.d.b	ENSGT00390000018500.a	ENSGT00940000156308	ENSGT00940000156396	ENSGT00960000190249	ENSGT00940000161175	ENSGT00940000160928.e	ENSGT00940000158668.c.i.b #10	ENSGT01030000234669.K.a.a.a.b.b
Laterata	ANCESTRAL SPECIES	1	ENSGT00640000091554	ENSGT00940000157794	ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00940000165995	ENSGT00940000166769	ENSGT00940000174128.A	ENSGT01020000230394.e.a.a.b.a.a.a	ENSGT00940000164287	ENSGT00940000166028	ENSGT00390000002887.d	ENSGT00940000154126.h.b.a.a #9	ENSGT00940000153587.a.a	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT00390000008726.h.b.f.a	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263521.a.a.b.b	ENSGT01100000263534.a.b.d.b	ENSGT00390000018500.a	ENSGT01100000263552.h.a.b.a.b	ENSGT00940000156308	ENSGT00940000156396	ENSGT01100000263519.E.a.a.b.a.b	ENSGT01100000263519.F.a	ENSGT00960000190249	ENSGT00940000161175
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000020174	ENSPMRG00000020185	ENSPMRG00000020211	PLXNB1 (ENSPMRG00000020280)	ENSPMRG00000020408	ENSPMRG00000009106	ENSPMRG00000009124	ENSPMRG00000009138	ENSPMRG00000009166	ENSPMRG00000009168	ENSPMRG00000009175	ENSPMRG00000009182	ENSPMRG00000009191	ENSPMRG00000009200 #9	ENSPMRG00000009206	GABBR1 (ENSPMRG00000009216) #22	ENSPMRG00000009230	ENSPMRG00000009237	ENSPMRG00000009242	ENSPMRG00000009254	ENSPMRG00000009259	ENSPMRG00000009264	ENSPMRG00000009270	ENSPMRG00000009276	SH3BP5L (ENSPMRG00000009279)	ENSPMRG00000009283	ENSPMRG00000009290	ENSPMRG00000009294	ENSPMRG00000009298	ENSPMRG00000009302	ENSPMRG00000009306
Argentine black and white tegu	MODERN SPECIES	77	MTMR14 (ENSSMRG00000016518)	LHFPL4 (ENSSMRG00000016519)	SETD5 (ENSSMRG00000016520)	ENSSMRG00000016521	ENSSMRG00000016522	PLXNB1 (ENSSMRG00000016525)	ENSSMRG00000016530	ENSSMRG00000016534	ENSSMRG00000016535	ENSSMRG00000016537	ENSSMRG00000016540	ENSSMRG00000016545	ENSSMRG00000016548	ENSSMRG00000016549 #9	ENSSMRG00000016553	GABBR1 (ENSSMRG00000016560) #22	ENSSMRG00000016862	RPS5 (ENSSMRG00000016863)	ENSSMRG00000016865	ENSSMRG00000016867	ENSSMRG00000016869	ENSSMRG00000016873	ENSSMRG00000000029	SH3BP5L (ENSSMRG00000000068)	ENSSMRG00000000099	ENSSMRG00000000111	ENSSMRG00000000117	ENSSMRG00000000146	ENSSMRG00000000175	HDAC11 (ENSSMRG00000000187)	PANK3 (ENSSMRG00000000255)
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000154857	ENSGT00390000016233	ENSGT00390000008947	ENSGT00940000156378.b	ENSGT00640000091554	ENSGT00940000157794	ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00940000165995	ENSGT00940000166769	ENSGT01020000230394.e.a.a.b.a.a.a	ENSGT00940000164287	ENSGT00390000003710	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT00390000008726.h.b.f.a	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263521.a.a.b.b	ENSGT01100000263534.a.b.d.b	ENSGT00390000018500.a	ENSGT00940000156308	ENSGT00940000156396	ENSGT00960000190249	ENSGT00940000161175	ENSGT00940000160928.e	ENSGT00940000158668.c.i.b #10	ENSGT01030000234669.K.a.a.a.b.b
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000156378.b.c	ENSGT00940000156378.b.d	ENSGT00640000091554	ENSGT00940000157794.c	ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00940000165995	ENSGT00940000166769	ENSGT01020000230394.e.a.a.b.a.a.a	ENSGT00940000164287	ENSGT00390000003710	ENSGT01100000263495.D.b	ENSGT00940000157337	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT00390000008726.h.b.f.a	ENSGT01100000263552.g.b.b.a.b.b	ENSGT00390000018500.a	ENSGT01100000263552.h.b.s.b.b	ENSGT00940000156308	ENSGT00940000156396.p	ENSGT01100000263519.E.a.a.b.a.b	ENSGT00960000190249.a	ENSGT00940000161175	ENSGT00940000160928.e.b	ENSGT01030000234669.K.a.a.a.b.b	ENSGT01030000234669.A.e.a.a.a.a.a.b
Indian cobra	MODERN SPECIES	1	CPNE9 (ENSNNAG00000000696)	MTMR14 (ENSNNAG00000000485)	LHFPL4 (ENSNNAG00000000383)	SETD5 (ENSNNAG00000000334)	ENSNNAG00000000302	ENSNNAG00000000287	ENSNNAG00000000277	ENSNNAG00000000264	ENSNNAG00000002416	ENSNNAG00000002406	ENSNNAG00000002347	ENSNNAG00000002319	ENSNNAG00000002305	ENSNNAG00000002285	ENSNNAG00000002278	GABBR1 (ENSNNAG00000002145) #22	ENSNNAG00000002093	RPS5 (ENSNNAG00000002078)	ENSNNAG00000002037	ENSNNAG00000002021	ENSNNAG00000002009	SH3BP5L (ENSNNAG00000001986)	ENSNNAG00000001966	ENSNNAG00000001955	ENSNNAG00000001915	HDAC11 (ENSNNAG00000001886)	PANK3 (ENSNNAG00000001864)	ENSNNAG00000001853	ENSNNAG00000001841	ENSNNAG00000001826	ENSNNAG00000001808
Elapidae_a	ANCESTRAL SPECIES	69	ENSGT00390000008947	ENSGT00940000156378.b.c	ENSGT00640000091554	ENSGT00940000157794.c	ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00940000165995	ENSGT00940000166769	ENSGT01020000230394.e.a.a.b.a.a.a.h	ENSGT00940000164287	ENSGT00390000003710	ENSGT01100000263495.D.b	ENSGT00940000157337	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT00390000008726.h.b.f.a	ENSGT01100000263552.g.b.b.a.b.b	ENSGT00390000018500.a	ENSGT01100000263552.h.b.s.b.b	ENSGT00940000156308	ENSGT00940000156396.p	ENSGT01100000263519.E.a.a.b.a.b	ENSGT00960000190249.a	ENSGT00940000161175	ENSGT00940000160928.e.b
Acanthophiinae	ANCESTRAL SPECIES	67	ENSGT00940000156378.b.d	ENSGT00640000091554	ENSGT00940000157794.c	ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00940000165995	ENSGT00940000166769	ENSGT01020000230394.e.a.a.b.a.a.a.h	ENSGT00940000164287	ENSGT00390000003710	ENSGT00940000154488.C.j	ENSGT01100000263495.D.b	ENSGT00940000157337	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT00390000008726.h.b.f.a	ENSGT00390000018500.a	ENSGT01100000263552.h.b.s.b.b	ENSGT00940000156308	ENSGT00940000156396.p	ENSGT00940000161175	ENSGT00940000160928.e.b
Mainland tiger snake	MODERN SPECIES	189					MTMR14 (ENSNSUG00000014702)	LHFPL4 (ENSNSUG00000014704)	SETD5 (ENSNSUG00000014705)	ENSNSUG00000014715	PLXNB1 (ENSNSUG00000014718)	ENSNSUG00000014720	ENSNSUG00000014721	ENSNSUG00000014722	ENSNSUG00000014723	ENSNSUG00000014725	ENSNSUG00000014728	GABBR1 (ENSNSUG00000014731) #22	RNF225 (ENSNSUG00000014772)	RPS5 (ENSNSUG00000014774)	ENSNSUG00000014777	ENSNSUG00000014779	ENSNSUG00000014780	SH3BP5L (ENSNSUG00000014781)	ENSNSUG00000014782	ENSNSUG00000014784	ENSNSUG00000014785	ENSNSUG00000014786	ENSNSUG00000014789	ENSNSUG00000014790	HDAC11 (ENSNSUG00000014793)	PANK3 (ENSNSUG00000014796)	ENSNSUG00000014825
Eastern brown snake	MODERN SPECIES	100	CPNE9 (ENSPTXG00000012841)	MTMR14 (ENSPTXG00000012837)	LHFPL4 (ENSPTXG00000012835)	SETD5 (ENSPTXG00000012833)	ENSPTXG00000012831	ENSPTXG00000012830	PLXNB1 (ENSPTXG00000012799)	ENSPTXG00000012797	ENSPTXG00000012796	ENSPTXG00000012795	ENSPTXG00000012794	ENSPTXG00000012793	ENSPTXG00000012792	ENSPTXG00000012790	ENSPTXG00000012788	GABBR1 (ENSPTXG00000012778) #22	RNF225 (ENSPTXG00000012776)	RPS5 (ENSPTXG00000012774)	ENSPTXG00000012768	ENSPTXG00000012767	SH3BP5L (ENSPTXG00000012764)	HDAC11 (ENSPTXG00000012761)	PANK3 (ENSPTXG00000012757)	ENSPTXG00000012754	ENSPTXG00000012751	ZNF692 (ENSPTXG00000012750)
Blue-lipped sea krait	MODERN SPECIES	481																GABBR1 (ENSLLTG00000002353) #22	RNF225 (ENSLLTG00000002629)
Lizard	MODERN SPECIES	1	ENSACAG00000039531	ENSACAG00000010475	ccdc51 (ENSACAG00000043405)	ENSACAG00000010335	ENSACAG00000010392	ENSACAG00000035169	ENSACAG00000010543	ENSACAG00000042417	ENSACAG00000029547	ENSACAG00000037096	ENSACAG00000025926 #9	ENSACAG00000035187	ENSACAG00000044608	ENSACAG00000042287	ENSACAG00000036560	ENSACAG00000010752 #22	ENSACAG00000034896	RPS5 (ENSACAG00000037045)	ENSACAG00000011042	ENSACAG00000028734	ENSACAG00000041854	ENSACAG00000011147	ENSACAG00000037705	ENSACAG00000024089	ENSACAG00000036855	ENSACAG00000011268	ENSACAG00000029487	ENSACAG00000039545	ENSACAG00000011401	ENSACAG00000028531	ENSACAG00000045208
tuatara	MODERN SPECIES	963									ENSSPUG00000014534	ENSSPUG00000014549	ENSSPUG00000014557	ENSSPUG00000014566	ENSSPUG00000014571	ENSSPUG00000014579	ENSSPUG00000014589	GABBR1 (ENSSPUG00000014625) #22	RPS5 (ENSSPUG00000014897)	ENSSPUG00000014937
Archelosauria	ANCESTRAL SPECIES	78														ENSGT00390000018500.a	ENSGT01070000253822.E.f	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT00390000008726.h.b.f.a	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263521.a.a.b.b	ENSGT01100000263534.a.b.d	ENSGT00940000154715.a.b.a.a.b.a.a
Archosauria	ANCESTRAL SPECIES	66											ENSGT00390000018500.a	ENSGT01100000263534.a.b.d	ENSGT01100000263521.a.a.b.b	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01070000253822.E.f	ENSGT00940000157642 #22	ENSGT00390000014159	ENSGT00940000159890	ENSGT00940000158480	ENSGT00390000008658	ENSGT00390000008276	ENSGT00390000010554	ENSGT00940000159263	ENSGT00940000158329	ENSGT00940000158047	ENSGT00390000003020 #8	ENSGT00390000001153 #16	ENSGT00390000008126 #17	ENSGT00530000063632.B
Aves	ANCESTRAL SPECIES	117															ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806
Neognathae	ANCESTRAL SPECIES	94															ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806
Galloanserae	ANCESTRAL SPECIES	112															ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00940000163974
Anatidae	ANCESTRAL SPECIES	177															ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00940000163974
Duck	MODERN SPECIES	1326													ENSAPLG00000007180	ENSAPLG00000016664	ENSAPLG00000007320	GABBR1 (ENSAPLG00000030492) #22	RPS5 (ENSAPLG00000017615)
Pink-footed goose	MODERN SPECIES	489											ENSABRG00000019625 #30	ENSABRG00000019623	ENSABRG00000019617	ENSABRG00000019614	ENSABRG00000019607	GABBR1 (ENSABRG00000019603) #22	RNF225 (ENSABRG00000019600)	ENSABRG00000019593	TUBB (ENSABRG00000019592)	ENSABRG00000019584	ZBTB9 (ENSABRG00000019582)
Neognathae_b	ANCESTRAL SPECIES	75														ENSGT00390000018500.a	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806
Passeriformes	ANCESTRAL SPECIES	110														ENSGT00390000018500.a	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00390000010806
Passeriformes_d	ANCESTRAL SPECIES	107														ENSGT00390000018500.a	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00390000010806
Passeriformes_g	ANCESTRAL SPECIES	92											ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263521.a.a.b.b	ENSGT01100000263534.a.b.d	ENSGT00390000018500.a	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00390000010806
Passeroidea	ANCESTRAL SPECIES	141															ENSGT00390000018500.a	ENSGT00940000157642 #22	ENSGT00390000010806
Zebra finch	MODERN SPECIES	39	ENSTGUG00000027222	PPP1R11 (ENSTGUG00000020677) #16	POLR1H (ENSTGUG00000019906) #17	ENSTGUG00000029407	ENSTGUG00000023033	ENSTGUG00000023214	ENSTGUG00000020756	ENSTGUG00000023270	ENSTGUG00000019425	ZBTB12 (ENSTGUG00000029039)	ENSTGUG00000019947	ENSTGUG00000026211	ENSTGUG00000028051	ENSTGUG00000027802	ENSTGUG00000019904	GABBR1 (ENSTGUG00000024008) #22	RPS5 (ENSTGUG00000015321)	ENSTGUG00000028711	ENSTGUG00000028982	ENSTGUG00000021904	ENSTGUG00000025000	ENSTGUG00000020583	ENSTGUG00000019749	ENSTGUG00000022096	ENSTGUG00000025646	ENSTGUG00000023616	ENSTGUG00000015672	ENSTGUG00000015683 #10	ENSTGUG00000023291	ENSTGUG00000020023
Medium ground finch	MODERN SPECIES	467													ENSGFOG00000002756	ENSGFOG00000002770	ENSGFOG00000002776	GABBR1 (ENSGFOG00000002855) #22
Neognathae_c	ANCESTRAL SPECIES	83													ENSGT00390000018500.a	ENSGT00940000154488.A.b	ENSGT00940000154715.b.k.a	ENSGT00940000157642 #22
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	74	PHF1 (ENSSHBG00005017374)	CUTA (ENSSHBG00005017382)	SYNGAP1 (ENSSHBG00005017387)	ZBTB9 (ENSSHBG00005000925)	ENSSHBG00005000934	TUBB (ENSSHBG00005000940)	FLOT1 (ENSSHBG00005000952)	ENSSHBG00005000956 ##20	ENSSHBG00005005918 ##20	ENSSHBG00005008002	ENSSHBG00005008013	ENSSHBG00005008031	DDR1 (ENSSHBG00005008051)	ENSSHBG00005008063	ENSSHBG00005008071	ENSSHBG00005008082 #22	ENSSHBG00005008097 #22	ENSSHBG00005008106
Kakapo	MODERN SPECIES	74	CUTA (ENSSHBG00005017382)	SYNGAP1 (ENSSHBG00005017387)	ZBTB9 (ENSSHBG00005000925)	ENSSHBG00005000934	TUBB (ENSSHBG00005000940)	FLOT1 (ENSSHBG00005000952)	ENSSHBG00005000956 ##20	ENSSHBG00005005918 ##20	ENSSHBG00005008002	ENSSHBG00005008013	ENSSHBG00005008031	DDR1 (ENSSHBG00005008051)	ENSSHBG00005008063	ENSSHBG00005008071	ENSSHBG00005008082 #22	ENSSHBG00005008097 #22	ENSSHBG00005008106
Golden eagle	MODERN SPECIES	55						DDR1 (ENSACCG00020015301)	ENSACCG00020015333	ENSACCG00020015360	ENSACCG00020015378	ENSACCG00020015738	SH3BP5L (ENSACCG00020016019)	ENSACCG00020016031	ENSACCG00020016038	ENSACCG00020016047	ENSACCG00020016062	GABBR1 (ENSACCG00020016080) #22	RNF225 (ENSACCG00020016108)	RPS5 (ENSACCG00020016126)	ENSACCG00020016176	ENSACCG00020016198	BRD2 (ENSACCG00020016208)	ENSACCG00020016250	ENSACCG00020016292	ENSACCG00020016313
African ostrich	MODERN SPECIES	332	ENSSCUG00000005717	ENSSCUG00000005721	ENSSCUG00000005724 #10	ENSSCUG00000005725	ENSSCUG00000005726	ENSSCUG00000005727	ENSSCUG00000005728	ENSSCUG00000005729	ENSSCUG00000005730	ENSSCUG00000005731	ENSSCUG00000005732	ENSSCUG00000005734	ENSSCUG00000005737 ##21	ENSSCUG00000005739	ENSSCUG00000005741	GABBR1 (ENSSCUG00000005783) #22	RPS5 (ENSSCUG00000005836)
Australian saltwater crocodile	MODERN SPECIES	52	ENSCPRG00005006745	ENSCPRG00005006749	ENSCPRG00005006763	ENSCPRG00005006765	ENSCPRG00005006781	ENSCPRG00005006813	ENSCPRG00005006881	ENSCPRG00005007278	ENSCPRG00005007283	ENSCPRG00005007288	ENSCPRG00005007323	SH3BP5L (ENSCPRG00005007330)	ENSCPRG00005007338	ENSCPRG00005007371	ENSCPRG00005007748	GABBR1 (ENSCPRG00005007763) #22	RNF225 (ENSCPRG00005007864)	RPS5 (ENSCPRG00005007867)	CCDC105 (ENSCPRG00005007869)	AGPAT1 (ENSCPRG00005007872)	EPX (ENSCPRG00005007883)	ENSCPRG00005007909	SUPT4H1 (ENSCPRG00005008031)	RNF43 (ENSCPRG00005008034)	HSF5 (ENSCPRG00005008051)	MTMR4 (ENSCPRG00005008068)	ENSCPRG00005008078	ENSCPRG00005008082	ENSCPRG00005008084	ABHD11 (ENSCPRG00005008094)	CLDN3 (ENSCPRG00005008106)
Cryptodira	ANCESTRAL SPECIES	113															ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263521.a.a.b.b	ENSGT01100000263534.a.b.d	ENSGT00940000154715.a.b.a.a.b.a.a
Testudinoidea	ANCESTRAL SPECIES	69							ENSGT00940000154126.h.b.a.a #9	ENSGT00940000157023.c.a.b	ENSGT01100000263552.h.a.a.a.b.b.b	ENSGT01100000263519.E.a.a.b.b.a.e.b	ENSGT00940000154411.z.b.b.a.a.a	ENSGT00940000153527.d.rb.b.b.b.a #21	ENSGT00940000153527.d.rb.b.b.b.b #21	ENSGT01070000253822.D.a.n.b	ENSGT01070000253822.E.f	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263521.a.a.b.b	ENSGT01100000263534.a.b.d	ENSGT00940000154715.a.b.a.a.b.a.a	ENSGT01100000263552.h.a.a.a.a.b.a
Emydidae	ANCESTRAL SPECIES	104							ENSGT01100000263556.a.a.l.c.b.a	ENSGT00940000154126.h.b.a.a #9	ENSGT00940000157023.c.a.b	ENSGT01100000263552.h.a.a.a.b.b.b	ENSGT01100000263519.E.a.a.b.b.a.e.b	ENSGT00940000154411.z.b.b.a.a.a	ENSGT00940000153527.d.rb.b.b.b.a #21	ENSGT00940000153527.d.rb.b.b.b.b #21	ENSGT01070000253822.E.f	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263534.a.b.d	ENSGT00940000154715.a.b.a.a.b.a.a	ENSGT01100000263552.h.a.a.a.a.b.a
painted turtle	MODERN SPECIES	1071													ENSCPBG00000013046 #21	ENSCPBG00000013043 #21	ENSCPBG00000013042	GABBR1 (ENSCPBG00000013034) #22	RNF225 (ENSCPBG00000013030)	RPS5 (ENSCPBG00000013028)	CCDC105 (ENSCPBG00000013023)	ENSCPBG00000013017	ENSCPBG00000013016	ENSCPBG00000013014	ENSCPBG00000013011
Three-toed box turtle	MODERN SPECIES	150																GABBR1 (ENSTMTG00000003736) #22	RNF225 (ENSTMTG00000003774)	RPS5 (ENSTMTG00000003786)
Testudinidae	ANCESTRAL SPECIES	86					ENSGT01100000263552.h.a.a.a.b.a.b	ENSGT01100000263556.a.a.l.c.b.a	ENSGT00940000154126.h.b.a.a #9	ENSGT00940000157023.c.a.b	ENSGT01100000263552.h.a.a.a.b.b.b	ENSGT01100000263519.E.a.a.b.b.a.e.b	ENSGT00940000154411.z.b.b.a.a.a	ENSGT00940000153527.d.rb.b.b.b.a #21	ENSGT00940000153527.d.rb.b.b.b.b #21	ENSGT01070000253822.D.a.n.b	ENSGT00930000152259	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT00390000010806	ENSGT00390000003207	ENSGT01100000263552.g.b.b.a.b.b	ENSGT01100000263521.a.a.b.b	ENSGT01100000263534.a.b.d	ENSGT00940000154715.a.b.a.a.b.a.a	ENSGT01100000263552.h.a.a.a.a.b.a
Goode s thornscrub tortoise	MODERN SPECIES	129	ENSGEVG00005016721	ENSGEVG00005016751	ENSGEVG00005016774	ENSGEVG00005016797	ENSGEVG00005016805 #9	ENSGEVG00005016847	ENSGEVG00005016868	ENSGEVG00005016900	ENSGEVG00005016910	ENSGEVG00005016927	ENSGEVG00005016969	ENSGEVG00005016990 #21	ENSGEVG00005017016 #21	ENSGEVG00005012925	ENSGEVG00005012947	GABBR1 (ENSGEVG00005012984) #22	RNF225 (ENSGEVG00005013017)	RPS5 (ENSGEVG00005013051)	CCDC105 (ENSGEVG00005013084)	ENSGEVG00005013156	ENSGEVG00005013204	ENSGEVG00005013224	ENSGEVG00005013239	ENSGEVG00005013268	ENSGEVG00005013290	ENSGEVG00005013348	ENSGEVG00005013381	ENSGEVG00005013395	ENSGEVG00005013453	ENSGEVG00005013494	ENSGEVG00005013519
Abingdon island giant tortoise	MODERN SPECIES	744						ENSCABG00000009287	ENSCABG00000009289	ENSCABG00000009295	ENSCABG00000009299	ENSCABG00000009300	ENSCABG00000009301 #9	ENSCABG00000009304	ENSCABG00000009306	ENSCABG00000009307 #21	ENSCABG00000009309	GABBR1 (ENSCABG00000009313) #22	ENSCABG00000009322	RPS5 (ENSCABG00000009325)	CCDC105 (ENSCABG00000009329)	ENSCABG00000009344	ENSCABG00000009345	ENSCABG00000009346	ENSCABG00000009350	ENSCABG00000009351	ENSCABG00000009353	ENSCABG00000009355	ENSCABG00000009356
Anura	ANCESTRAL SPECIES	33	ENSGT00940000159200	ENSGT00390000010512	ENSGT00940000161798	ENSGT00390000007075	ENSGT00390000012691.d	ENSGT00390000008815	ENSGT00940000161022	ENSGT00940000160668	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT00940000169011	ENSGT00390000010806	ENSGT00390000018500.a	ENSGT00940000157642 #22	ENSGT00940000163974	ENSGT01070000253822.D.b	ENSGT00530000063632.B	ENSGT00390000001153 #16	ENSGT00940000161006.a	ENSGT00510000047676
Leishan spiny toad	MODERN SPECIES	12	B3GALT4 (ENSLLEG00000023322)	WDR46 (ENSLLEG00000023371)	ENSLLEG00000024002	VPS52 (ENSLLEG00000024171)	RING1 (ENSLLEG00000024306)	HSD17B8 (ENSLLEG00000024356)	ENSLLEG00000024412	PHF1 (ENSLLEG00000024519)	CUTA (ENSLLEG00000024638)	ENSLLEG00000024796	ZBTB9 (ENSLLEG00000024914)	ENSLLEG00000024941	ENSLLEG00000025008	ENSLLEG00000025078	SH3BP5L (ENSLLEG00000025168)	GABBR1 (ENSLLEG00000025381) #22	ENSLLEG00000025926	ENSLLEG00000025984	ENSLLEG00000026020	ENSLLEG00000026084	ENSLLEG00000015952	ENSLLEG00000015995	ENSLLEG00000016252	ENSLLEG00000016326	ENSLLEG00000016353	MGAT1 (ENSLLEG00000016406)	NDUFAF7 (ENSLLEG00000016490)	PPP1R11 (ENSLLEG00000016528) #16	ENSLLEG00000016628	ENSLLEG00000016678	ENSLLEG00000016980
Frog	MODERN SPECIES	8	b3galt4 (ENSXETG00000045704)	wdr46 (ENSXETG00000020398)	vps52 (ENSXETG00000020385)	ring1 (ENSXETG00000020370)	hsd17b8 (ENSXETG00000020365)	slc39a7 (ENSXETG00000020367)	rps18 (ENSXETG00000020394)	phf1 (ENSXETG00000020362)	cuta (ENSXETG00000025575)	syngap1 (ENSXETG00000020358)	zbtb9 (ENSXETG00000048840)	ENSXETG00000038310	ccdc105 (ENSXETG00000035593)	angptl2 (ENSXETG00000020355)	sh3bp5l (ENSXETG00000020349)	gabbr1 (ENSXETG00000020346) #22	ENSXETG00000036675	ENSXETG00000044691	btn1a1 (ENSXETG00000019020)	chst4 (ENSXETG00000019025)	mgat1 (ENSXETG00000019026)	ppp1r11 (ENSXETG00000035391) #16	ENSXETG00000040807	pglyrp1-like.1 (ENSXETG00000039671)	XB5992703 [provisional] (ENSXETG00000019032)	trappc6a (ENSXETG00000035643)	ENSXETG00000035101	ENSXETG00000035664	ovol3 (ENSXETG00000046790)	rack1 (ENSXETG00000024447)	degs3 (ENSXETG00000012858)
Coelacanth	MODERN SPECIES	654	ENSLACG00000013292	ENSLACG00000013231	ENSLACG00000012920 #9	TCF19 (ENSLACG00000012859)	ENSLACG00000012622	ENSLACG00000012221	slc6a8 (ENSLACG00000011784)	ENSLACG00000022663	FLOT1 (ENSLACG00000011074)	RPS5 (ENSLACG00000009935)	ENSLACG00000009873	MGAT1 (ENSLACG00000009723)	GTF2H4 (ENSLACG00000008796)	SH3BP5L (ENSLACG00000008488)	ENSLACG00000006782	GABBR1 (ENSLACG00000004113) #22	ENSLACG00000022217	ENSLACG00000001576
Actinopterygii	ANCESTRAL SPECIES	488												ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a	ENSGT00940000157642 #22	ENSGT01060000248544.a.b.b
Neopterygii	ANCESTRAL SPECIES	403												ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a	ENSGT00940000157642 #22	ENSGT01060000248544.a.b.b
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	146							ENSGT00510000049347.g	ENSGT00550000074977	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205959	ENSGT00940000169242	ENSGT00390000001026	ENSGT00390000016199.a	ENSGT00980000199373	ENSGT00940000157010.m	ENSGT00390000016820.d	ENSGT00940000165642	ENSGT00390000014900.b.a	ENSGT01100000266855	ENSGT00390000006412	ENSGT00940000154018.b.b	ENSGT00440000033807	ENSGT00940000159770
Clupeocephala	ANCESTRAL SPECIES	27		ENSGT00940000155565.a	ENSGT00940000158338	ENSGT00390000013846.a.b	ENSGT00390000003781.e.a	ENSGT00510000049347.g	ENSGT00550000074977	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205959	ENSGT00940000169242	ENSGT00390000001026	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT00390000016820.d	ENSGT00940000165642	ENSGT00390000014900.b.a	ENSGT01100000266855	ENSGT00390000006412	ENSGT00940000154018.b.b	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123
Otomorpha	ANCESTRAL SPECIES	140				ENSGT00390000013846.a.b	ENSGT00390000003781.e.a	ENSGT00510000049347.g	ENSGT00550000074977	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00390000016199.a	ENSGT00980000199373	ENSGT00940000157010.m	ENSGT00390000016820.d	ENSGT00940000165642	ENSGT00390000014900.b.a	ENSGT01100000266855	ENSGT00390000006412	ENSGT00940000154018.b.b	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546.a	ENSGT00980000198756
Otophysi	ANCESTRAL SPECIES	128	ENSGT00390000000214.a.a.e	ENSGT00940000165744	ENSGT00940000155457.b	ENSGT00940000154477.kc	ENSGT00940000156324.f.a	ENSGT00940000154477.jc.a	ENSGT00550000074977	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205233	ENSGT00390000016199.a	ENSGT00980000199373	ENSGT00940000157010.m	ENSGT00390000016820.d	ENSGT00940000165642	ENSGT00390000014900.b.a	ENSGT01100000266855	ENSGT00390000006412	ENSGT00940000154018.b.b	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546.a
Characiphysae	ANCESTRAL SPECIES	70	ENSGT00940000155158.q.a	ENSGT00390000000214.a.a.e	ENSGT00940000165744	ENSGT00940000155457.b	ENSGT00940000156324.f.a	ENSGT00940000154477.jc.a	ENSGT00550000074977	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205233	ENSGT00990000205248	ENSGT00940000163756.c.b	ENSGT00940000175067	ENSGT00390000016319	ENSGT00940000161100	ENSGT00390000001986	ENSGT00390000002748	ENSGT01020000230438.D.a	ENSGT01020000230438.D.b	ENSGT00940000154494.a.p	ENSGT00950000183206.a.b.a.b	ENSGT00940000166417	ENSGT01100000263535.b.a.a.a.a.c.a
Characiphysae_b	ANCESTRAL SPECIES	81	ENSGT00940000155158.q.a	ENSGT00390000000214.a.a.e	ENSGT00940000165744	ENSGT00940000155457.b	ENSGT00940000156324.f.a	ENSGT00940000154477.jc.a	ENSGT00550000074977	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205233	ENSGT00990000205248	ENSGT00940000163756.c.b	ENSGT00390000016319	ENSGT00940000161100	ENSGT00390000001986	ENSGT00390000002748	ENSGT01020000230438.D.a	ENSGT01020000230438.D.b	ENSGT00940000154494.a.p	ENSGT00950000183206.a.b.a.b	ENSGT00940000166417	ENSGT01100000263535.b.a.a.a.a.c.a	ENSGT01030000234968
Characoidei	ANCESTRAL SPECIES	75	ENSGT00940000160721	ENSGT00940000155158.q.a.g	ENSGT00390000000214.a.a.e	ENSGT00940000165744	ENSGT00940000156324.f.a	ENSGT00940000154477.jc.a	ENSGT00550000074977	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205233	ENSGT00990000205248
Red-bellied piranha	MODERN SPECIES	126	ENSPNAG00000015975	ENSPNAG00000016026	ENSPNAG00000016041	robo2 (ENSPNAG00000016285)	ROBO1 (ENSPNAG00000016376)	opn1mw4 (ENSPNAG00000017727)	MSH5 (ENSPNAG00000017859)	ENSPNAG00000017869	ENSPNAG00000017879	ENSPNAG00000017887	ppt2a.1 (ENSPNAG00000017993)	dhx16 (ENSPNAG00000018065)	rnf183 (ENSPNAG00000018083)	mgat1a (ENSPNAG00000018099)	sh3bp5la (ENSPNAG00000018161)	GABBR1 (ENSPNAG00000018238) #22	ENSPNAG00000018252	lta (ENSPNAG00000018264)	ENSPNAG00000018279
Mexicana tetra	MODERN SPECIES		stim1a (ENSAMXG00000038559)	ENSAMXG00000011890	ENSAMXG00000011913	robo2 (ENSAMXG00000011947)	ENSAMXG00000037750	ROBO1 (ENSAMXG00000012031)	ENSAMXG00000039714	ENSAMXG00000005245	ppt2a.1 (ENSAMXG00000034281)	dhx16 (ENSAMXG00000005181)	ENSAMXG00000037090	rnf183 (ENSAMXG00000026003)	mgat1a (ENSAMXG00000043888)	sh3bp5la (ENSAMXG00000033132)	tnfb (ENSAMXG00000005117)	GABBR1 (ENSAMXG00000005133) #22	ENSAMXG00000037203	ENSAMXG00000039629	ptbp2b (ENSAMXG00000000378)	RWDD3 (ENSAMXG00000000400)	hccsa.1 (ENSAMXG00000000407)	ENSAMXG00000040443	ENSAMXG00000000419	ENSAMXG00000037551	ENSAMXG00000040554	slc8a2b (ENSAMXG00000030620)	ENSAMXG00000007580	ENSAMXG00000042344	pnkp (ENSAMXG00000007602)	ENSAMXG00000044016	ENSAMXG00000036822
Electric eel	MODERN SPECIES	499	tsku (ENSEEEG00000020299)	ENSEEEG00000020298	rap1gap2a (ENSEEEG00000020296)	xaf1 (ENSEEEG00000020292)	FBXO39 (ENSEEEG00000020295)	tekt1 (ENSEEEG00000020291)	inpp5ka (ENSEEEG00000020203)	ENSEEEG00000020198	ENSEEEG00000020195	ppt2a.1 (ENSEEEG00000020183)	ENSEEEG00000020181	dhx16 (ENSEEEG00000019705)	rnf183 (ENSEEEG00000019669)	mgat1a (ENSEEEG00000019668)	sh3bp5la (ENSEEEG00000019665)	GABBR1 (ENSEEEG00000019641) #22	tnfb (ENSEEEG00000019634)	lta (ENSEEEG00000019632)	ENSEEEG00000019631	ENSEEEG00000019630	ENSEEEG00000019628	ENSEEEG00000019627	psenen (ENSEEEG00000019617)	hspb6 (ENSEEEG00000019615)	lin37 (ENSEEEG00000019612)
Channel catfish	MODERN SPECIES	8	TPR (ENSIPUG00000001242)	c17h1orf27 (ENSIPUG00000001230)	pdca (ENSIPUG00000001218)	ptgs2a (ENSIPUG00000001192)	pla2g4a (ENSIPUG00000001147)	arpc5a (ENSIPUG00000001126)	rnf2 (ENSIPUG00000001108)	fam129a (ENSIPUG00000001092)	ccdc105 (ENSIPUG00000001073)	ENSIPUG00000001057	ppt2a.1 (ENSIPUG00000001050)	DHX16 (ENSIPUG00000001025)	rnf183 (ENSIPUG00000001015)	mgat1a (ENSIPUG00000001000)	sh3bp5la (ENSIPUG00000000987)	GABBR1 (ENSIPUG00000000932) #22	tnfb (ENSIPUG00000000977)	ENSIPUG00000000925	APOM (ENSIPUG00000000916)	ENSIPUG00000000907	ENSIPUG00000000900	CRYAA (ENSIPUG00000000887)	proser3 (ENSIPUG00000000872)	lin37 (ENSIPUG00000000827)	ctrl (ENSIPUG00000000820)	hsc70 (ENSIPUG00000000794)	ENSIPUG00000000783	ENSIPUG00000000779	ENSIPUG00000000770	ENSIPUG00000000755	ENSIPUG00000000730
Cyprinoidei	ANCESTRAL SPECIES	4	ENSGT00940000157208	ENSGT00940000156971.A	ENSGT00390000009776.o	ENSGT00390000016956	ENSGT00940000155511.n.a	ENSGT00950000183022.a.a.a	ENSGT00390000008756	ENSGT00950000183168.D	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205233	ENSGT00390000016199.a	ENSGT00980000199373	ENSGT00940000157010.m	ENSGT00390000016820.d	ENSGT00940000165642	ENSGT00390000014900.b.a	ENSGT00390000006412	ENSGT00940000154018.b.b	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546.a	ENSGT00980000198756
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	14	ENSGT00940000161579.c.b	ENSGT00890000139453.b.e.b.d	ENSGT00940000157208.g	ENSGT00390000009776.o.b	ENSGT00390000016956.g	ENSGT00940000155511.n.a.d	ENSGT00950000183022.a.a.a.g.b	ENSGT00390000008756.d	ENSGT00950000183168.D.e	ENSGT00940000169011.a	ENSGT00950000183190.a.a.b.d.g.a	ENSGT00940000158480.a	ENSGT00940000166999.B.b	ENSGT00530000063632.B.b.a	ENSGT00390000018500.a.d.a.a	ENSGT00940000157642.g.a #22	ENSGT01060000248544.a.b.b.a.a	ENSGT00990000205233.a	ENSGT00390000016199.a.a	ENSGT00940000157010.m.c	ENSGT00390000016820.d.b	ENSGT00390000014900.b.a.f	ENSGT00390000006412.f	ENSGT00940000154018.b.b.c	ENSGT00440000033807.b	ENSGT00940000159770.c	ENSGT00940000157123.l	ENSGT00940000154546.a.a	ENSGT00990000204278	ENSGT00940000165119.d	ENSGT00940000158360.ic.b.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	34	zgc:171927 (ENSCARG00000067465)	ENSCARG00000067463	NYAP2 (ENSCARG00000067361)	MECOM (ENSCARG00000067066)	mffa (ENSCARG00000066981)	mrpl44 (ENSCARG00000066967)	agfg1a (ENSCARG00000066947)	SLC19A3 (ENSCARG00000066937)	ENSCARG00000066935	sesn3 (ENSCARG00000066815)	ENSCARG00000066767	ENSCARG00000066754	rnf183 (ENSCARG00000066747)	mgat1a (ENSCARG00000066736)	sh3bp5la (ENSCARG00000066731)	GABBR1 (ENSCARG00000065945) #22	tnfb (ENSCARG00000065895)	lta (ENSCARG00000065889)	bag6 (ENSCARG00000065820)	ENSCARG00000065808	tspan13a (ENSCARG00000065801)	ankmy2a (ENSCARG00000065596)	MEOX2 (ENSCARG00000065579)	agmo (ENSCARG00000065542)	etv1 (ENSCARG00000065257)	arl4aa (ENSCARG00000065233)	tmem106ba (ENSCARG00000065226)	ENSCARG00000065222	mag (ENSCARG00000065202)	tekt1 (ENSCARG00000065187)	inpp5ka (ENSCARG00000064935)
Goldfish	MODERN SPECIES	34	ENSCARG00000034196	ENSCARG00000034180	ENSCARG00000034169	ENSCARG00000034115	ENSCARG00000034050	wsb1 (ENSCARG00000034018)	ENSCARG00000034003	cuedc1b (ENSCARG00000033982)	vezf1b (ENSCARG00000033960)	ENSCARG00000032192	OMG (ENSCARG00000032138)	ENSCARG00000032129	NF1 (ENSCARG00000031607)	akap1b (ENSCARG00000031328)	ENSCARG00000031307	GABBR1 (ENSCARG00000029208) #22	tnfb (ENSCARG00000029116)	lta (ENSCARG00000029107)	bag6 (ENSCARG00000028999)	tspan13a (ENSCARG00000028961)	ankmy2a (ENSCARG00000028499)	sostdc1a (ENSCARG00000028480)	MEOX2 (ENSCARG00000028458)	agmo (ENSCARG00000028436)	etv1 (ENSCARG00000027818)	arl4aa (ENSCARG00000027793)	tmem106ba (ENSCARG00000027784)	ENSCARG00000027777	mag (ENSCARG00000027761)	tekt1 (ENSCARG00000027742)	inpp5ka (ENSCARG00000027227)
Cyprininae_a	ANCESTRAL SPECIES	41	ENSGT00890000139453.b.e.b.d	ENSGT00940000157208.g	ENSGT00390000009776.o.b	ENSGT00390000016956.g	ENSGT00940000155511.n.a.d	ENSGT00950000183022.a.a.a.g.b	ENSGT00390000008756.d	ENSGT00950000183168.D.e	ENSGT00940000169011.a	ENSGT00950000183190.a.a.b.d.g.a	ENSGT00940000158480.a	ENSGT00940000166999.B.b	ENSGT00530000063632.B.b.a	ENSGT00390000018500.a.d.b	ENSGT00390000018500.a.d.a.a	ENSGT00940000157642.g.a #22	ENSGT01060000248544.a.b.b.a.a	ENSGT00990000205233.a	ENSGT00390000016199.a.a	ENSGT00980000199373	ENSGT00940000157010.m.c	ENSGT00390000016820.d.a	ENSGT00390000014900.b.a.f	ENSGT00390000006412.f	ENSGT00940000154018.b.b.c	ENSGT00440000033807.b	ENSGT00940000159770.c	ENSGT00940000156768.pb	ENSGT00940000157123.l	ENSGT00940000154546.a.a	ENSGT00990000204278
Common carp reference	MODERN SPECIES	39	ENSCCRG00000019871	NYAP2 (ENSCCRG00000063933)	ENSCCRG00000004181	mffa (ENSCCRG00000057546)	mrpl44 (ENSCCRG00000070414)	agfg1a (ENSCCRG00000028758)	ENSCCRG00000028717	ENSCCRG00000065518	ENSCCRG00000028708	ENSCCRG00000028703	ENSCCRG00000003813	ENSCCRG00000079917	dhx16 (ENSCCRG00000078521)	rnf183 (ENSCCRG00000058996)	sh3bp5la (ENSCCRG00000070853)	ENSCCRG00000004105 #22	tnfb (ENSCCRG00000001526)	lta (ENSCCRG00000054574)	bag6 (ENSCCRG00000049051)	ENSCCRG00000050603	tspan13a (ENSCCRG00000050605)	ankmy2a (ENSCCRG00000004143)	sostdc1a (ENSCCRG00000050611)	crppa (ENSCCRG00000050617)	agmo (ENSCCRG00000059350)	ENSCCRG00000037108	ENSCCRG00000080518	etv1 (ENSCCRG00000067182)	arl4aa (ENSCCRG00000057909)	seraf (ENSCCRG00000041659)	tmem106ba (ENSCCRG00000000450)
Golden-line barbel	MODERN SPECIES	41	rhbdd1 (ENSSGRG00000018796)	IRS1 (ENSSGRG00000018797)	ENSSGRG00000018800	MECOM (ENSSGRG00000018801)	mffa (ENSSGRG00000018804)	mrpl44 (ENSSGRG00000018805)	agfg1a (ENSSGRG00000018806)	ENSSGRG00000018813	sesn3 (ENSSGRG00000018814)	ENSSGRG00000018819	ENSSGRG00000018823	dhx16 (ENSSGRG00000018853)	rnf183 (ENSSGRG00000018855)	mgat1a (ENSSGRG00000018857)	sh3bp5la (ENSSGRG00000018858)	GABBR1 (ENSSGRG00000018869) #22	tnfb (ENSSGRG00000018942)	lta (ENSSGRG00000018943)	bag6 (ENSSGRG00000018945)	ENSSGRG00000019529	tspan13a (ENSSGRG00000019530)	ankmy2a (ENSSGRG00000019531)	sostdc1a (ENSSGRG00000019550)	crppa (ENSSGRG00000019551)	MEOX2 (ENSSGRG00000019553)	agmo (ENSSGRG00000019555)	DGKB (ENSSGRG00000019564)	etv1 (ENSSGRG00000019765)	arl4aa (ENSSGRG00000019768)	ENSSGRG00000019771	seraf (ENSSGRG00000019773)
Cyprininae	ANCESTRAL SPECIES	69	ENSGT00940000157208.h	ENSGT00940000156971.A	ENSGT00390000009776.o.a	ENSGT00390000016956.h	ENSGT00940000155511.n.a.c	ENSGT00950000183022.a.a.a.g.a	ENSGT00390000008756.c	ENSGT00950000183168.D.f	ENSGT00940000169011.b	ENSGT00950000183190.a.a.b.d.g.b	ENSGT00940000155779.a.a	ENSGT00940000158480.b	ENSGT00940000166999.B.a	ENSGT00530000063632.B.b.b	ENSGT00390000018500.a.d.a.b	ENSGT00940000157642.g.b #22	ENSGT01060000248544.a.b.b.a.b	ENSGT00990000205233.b	ENSGT00390000016199.a.b	ENSGT00980000199373	ENSGT00940000157010.m.d	ENSGT00390000016820.d.a	ENSGT00940000165642	ENSGT00390000014900.b.a.e	ENSGT00390000006412.e	ENSGT00940000154018.b.b.d	ENSGT00440000033807.a	ENSGT00940000159770.d	ENSGT00940000157123.k	ENSGT00940000154546.a.b	ENSGT00940000163868
Cyprininae_a	ANCESTRAL SPECIES	38	ENSGT00940000157208.h	ENSGT00940000156971.A	ENSGT00390000009776.o.a	ENSGT00390000016956.h	ENSGT00940000155511.n.a.c	ENSGT00950000183022.a.a.a.g.a	ENSGT00390000008756.c	ENSGT00950000183168.D.f	ENSGT00940000169011.b	ENSGT00950000183190.a.a.b.d.g.b	ENSGT00940000155779.a.a	ENSGT00940000158480.b	ENSGT00940000166999.B.a	ENSGT00530000063632.B.b.b	ENSGT00390000018500.a.d.a.b	ENSGT00940000157642.g.b #22	ENSGT01060000248544.a.b.b.a.b	ENSGT00990000205233.b	ENSGT00390000016199.a.b	ENSGT00940000157010.m.d	ENSGT00390000016820.d.b	ENSGT00390000014900.b.a.e	ENSGT00390000006412.e	ENSGT00940000154018.b.b.d	ENSGT00440000033807.a	ENSGT00940000159770.d	ENSGT00940000157123.k	ENSGT00940000154546.a.b	ENSGT00980000198756	ENSGT00940000160835	ENSGT00940000165119.c
Common carp reference	MODERN SPECIES	26	megf6 (ENSCCRG00000061464)	mffa (ENSCCRG00000056679)	mrpl44 (ENSCCRG00000038029)	agfg1a (ENSCCRG00000009188)	ENSCCRG00000009196	ENSCCRG00000078851	sesn3 (ENSCCRG00000009201)	ENSCCRG00000065386	ENSCCRG00000009206	ENSCCRG00000009213	ppt2a.1 (ENSCCRG00000009221)	dhx16 (ENSCCRG00000058939)	rnf183 (ENSCCRG00000075642)	mgat1a (ENSCCRG00000004113)	sh3bp5la (ENSCCRG00000004107)	ENSCCRG00000001542 #22	tnfb (ENSCCRG00000007334)	lta (ENSCCRG00000001076)	bag6 (ENSCCRG00000049032)	ankmy2a (ENSCCRG00000063421)	tspan13a (ENSCCRG00000026285)	ENSCCRG00000004151	sostdc1a (ENSCCRG00000004161)	crppa (ENSCCRG00000004164)	MEOX2 (ENSCCRG00000058534)	agmo (ENSCCRG00000069363)	DGKB (ENSCCRG00000050640)	etv1 (ENSCCRG00000050711)	arl4aa (ENSCCRG00000067279)	ENSCCRG00000082742	VWDE (ENSCCRG00000031994)
Golden-line barbel	MODERN SPECIES	5	ENSSGRG00000007065	MECOM (ENSSGRG00000007066)	megf6 (ENSSGRG00000007094)	mffa (ENSSGRG00000007199)	mrpl44 (ENSSGRG00000007201)	agfg1a (ENSSGRG00000007204)	SLC19A3 (ENSSGRG00000007391)	bloc1s3 (ENSSGRG00000007462)	sesn3 (ENSSGRG00000007463)	ENSSGRG00000007493	ENSSGRG00000007506	dhx16 (ENSSGRG00000007620)	rnf183 (ENSSGRG00000010408)	mgat1a (ENSSGRG00000010411)	sh3bp5la (ENSSGRG00000010414)	ENSSGRG00000010420 #22	lta (ENSSGRG00000010432)	bag6 (ENSSGRG00000010451)	ankmy2a (ENSSGRG00000011553)	sostdc1a (ENSSGRG00000011930)	crppa (ENSSGRG00000011936)	MEOX2 (ENSSGRG00000011938)	agmo (ENSSGRG00000011941)	DGKB (ENSSGRG00000012046)	etv1 (ENSSGRG00000014075)	arl4aa (ENSSGRG00000014076)	VWDE (ENSSGRG00000014078)	seraf (ENSSGRG00000014080)	tmem106ba (ENSSGRG00000014081)	lsr (ENSSGRG00000014083)	mag (ENSSGRG00000014087)
Goldfish	MODERN SPECIES	6	MECOM (ENSCARG00000005561)	megf6 (ENSCARG00000006563)	mffa (ENSCARG00000006888)	mrpl44 (ENSCARG00000006922)	agfg1a (ENSCARG00000006948)	SLC19A3 (ENSCARG00000007074)	ENSCARG00000007141	sesn3 (ENSCARG00000007152)	ENSCARG00000007205	ENSCARG00000007214	ppt2a.1 (ENSCARG00000007223)	dhx16 (ENSCARG00000007535)	rnf183 (ENSCARG00000013099)	mgat1a (ENSCARG00000013100)	sh3bp5la (ENSCARG00000013106)	GABBR1 (ENSCARG00000013209) #22	tnfb (ENSCARG00000015779)	lta (ENSCARG00000015781)	bag6 (ENSCARG00000015791)	ENSCARG00000015811	ENSCARG00000015814	tspan13a (ENSCARG00000015816)	ankmy2a (ENSCARG00000015826)	ENSCARG00000015867	sostdc1a (ENSCARG00000015873)	crppa (ENSCARG00000015880)	MEOX2 (ENSCARG00000015910)	agmo (ENSCARG00000015921)	DGKB (ENSCARG00000016026)	etv1 (ENSCARG00000017793)	arl4aa (ENSCARG00000018350)
Zebrafish	MODERN SPECIES	6	ENSDARG00000097344	sesn3 (ENSDARG00000015822)	ppt2a.3 (ENSDARG00000014208)	bloc1s3 (ENSDARG00000068828)	ENSDARG00000091607	ENSDARG00000054136	ppt2a.2 (ENSDARG00000010782)	ENSDARG00000087596	ppt2a.1 (ENSDARG00000068840)	ENSDARG00000068846	dhx16 (ENSDARG00000013150)	rnf183 (ENSDARG00000068851)	ENSDARG00000097289	mgat1a (ENSDARG00000012407)	sh3bp5la (ENSDARG00000019160)	GABBR1 (ENSDARG00000018967) #22	tnfb (ENSDARG00000013598)	lta (ENSDARG00000020483)	bag6 (ENSDARG00000075892)	tspan13a (ENSDARG00000068883)	ankmy2a (ENSDARG00000005948)	sostdc1a (ENSDARG00000068892)	crppa (ENSDARG00000005034)	MEOX2 (ENSDARG00000040911)	agmo (ENSDARG00000025595)	DGKB (ENSDARG00000027724)	etv1 (ENSDARG00000101959)	arl4aa (ENSDARG00000099918)	ENSDARG00000099361	ENSDARG00000101697	seraf (ENSDARG00000103443)
Clupeiformes	ANCESTRAL SPECIES	101				ENSGT00390000013846.a.b	ENSGT00390000003781.e.a	ENSGT00510000049347.g	ENSGT00550000074977	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00390000016199.a	ENSGT00980000199373	ENSGT00940000157010.m	ENSGT00390000016820.d	ENSGT00390000014900.b.a	ENSGT00390000006412	ENSGT00940000154018.b.b	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546.a	ENSGT00940000163868	ENSGT00940000165119	ENSGT00940000158360
Denticle herring	MODERN SPECIES	15	csnk2b (ENSDCDG00000022717)	ENSDCDG00000022726	ENSDCDG00000022728	MSH5 (ENSDCDG00000022730)	ENSDCDG00000022734	ENSDCDG00000022741	ENSDCDG00000022778	ENSDCDG00000022789	ENSDCDG00000022785	ENSDCDG00000022791	dhx16 (ENSDCDG00000022891)	rnf183 (ENSDCDG00000026678)	mgat1a (ENSDCDG00000026679)	ENSDCDG00000026681	sh3bp5la (ENSDCDG00000026682)	GABBR1 (ENSDCDG00000026708) #22	tnfb (ENSDCDG00000028429)	ENSDCDG00000028433	bag6 (ENSDCDG00000028440)	ENSDCDG00000028462	tspan13a (ENSDCDG00000028466)	ankmy2a (ENSDCDG00000028467)	sostdc1a (ENSDCDG00000028470)	crppa (ENSDCDG00000028471)	ENSDCDG00000028473	MEOX2 (ENSDCDG00000028477)	agmo (ENSDCDG00000028481)	DGKB (ENSDCDG00000028539)	etv1 (ENSDCDG00000030125)	arl4aa (ENSDCDG00000030179)	ENSDCDG00000030185
Euteleosteomorpha	ANCESTRAL SPECIES	13	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT00940000164898	ENSGT00940000162428	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205959	ENSGT00940000169242	ENSGT00390000001026	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT00390000016820.d	ENSGT00940000165642	ENSGT00390000014900.b.a	ENSGT00390000006412	ENSGT00940000154018.b.b	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546.a
Acanthomorphata	ANCESTRAL SPECIES	38	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT00940000164898	ENSGT00940000162428	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205959	ENSGT00940000169242	ENSGT00390000016199.a	ENSGT00940000157010.m
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00390000018560.a.a.b	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT00940000164898	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205959	ENSGT00940000169242	ENSGT00550000075030	ENSGT00940000181991	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000154065.b	ENSGT00940000177605	ENSGT00940000164898	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00940000181991	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Tiger tail seahorse	MODERN SPECIES	276	DGKB (ENSHCOG00000006513)	agmo (ENSHCOG00000006529)	MEOX2 (ENSHCOG00000006546)	sostdc1a (ENSHCOG00000006558)	crppa (ENSHCOG00000006568)	ankmy2a (ENSHCOG00000006604)	ankmy2a (ENSHCOG00000006616)	BRD2 (ENSHCOG00000006633)	ENSHCOG00000006651	ENSHCOG00000006658	ppt2a.2 (ENSHCOG00000006744)	dhx16 (ENSHCOG00000006805)	mgat1a (ENSHCOG00000006811)	sh3bp5la (ENSHCOG00000006830)	ENSHCOG00000006882	GABBR1 (ENSHCOG00000006927) #22	tnfb (ENSHCOG00000006938)	ENSHCOG00000000206	glrx3 (ENSHCOG00000006958)	bag6 (ENSHCOG00000006980)	tspan13a (ENSHCOG00000006990)	ENSHCOG00000006996	gpatch4 (ENSHCOG00000007016)	ENSHCOG00000007132	lmna (ENSHCOG00000007151)	ENSHCOG00000007164	rab11al (ENSHCOG00000000232)	rab25b (ENSHCOG00000007187)	lamtor2 (ENSHCOG00000007197)	rnf115a (ENSHCOG00000007208)	GBA1 (ENSHCOG00000007223)
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000177605	ENSGT00940000164898.d	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00940000181991	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00940000164898.d	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00940000181991	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01100000263776	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000164898.d	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01100000263776	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a
Carangaria	ANCESTRAL SPECIES	1	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Carangaria_A	ANCESTRAL SPECIES	27	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100	ENSGT00940000155620.r
Seriola	ANCESTRAL SPECIES	76				ENSGT01030000234768.a.b.c	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00940000181495	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Greater amberjack	MODERN SPECIES	44	pbx2 (ENSSDUG00000007301)	dnase2 (ENSSDUG00000007284)	rgl2 (ENSSDUG00000007256)	ENSSDUG00000007232	SYNGAP1 (ENSSDUG00000007196)	smg5 (ENSSDUG00000007122)	PAQR6 (ENSSDUG00000007108)	ntrk1 (ENSSDUG00000007073)	afp4 (ENSSDUG00000007059)	ppt2a.1 (ENSSDUG00000007034)	dhx16 (ENSSDUG00000006948)	rnf183 (ENSSDUG00000006937)	mgat1a (ENSSDUG00000006924)	sh3bp5la (ENSSDUG00000006905)	ENSSDUG00000006900	GABBR1 (ENSSDUG00000006779) #22	tnfb (ENSSDUG00000006756)	ENSSDUG00000006743	ENSSDUG00000006728	glrx3 (ENSSDUG00000006716)	ENSSDUG00000006707	bag6 (ENSSDUG00000006651)	tspan13a (ENSSDUG00000006625)	ENSSDUG00000006612	ENSSDUG00000006598	gpatch4 (ENSSDUG00000006583)	ENSSDUG00000006373	lmna (ENSSDUG00000006311)	ENSSDUG00000006298	rab11al (ENSSDUG00000006278)	rab25b (ENSSDUG00000006260)
Yellowtail amberjack	MODERN SPECIES	2757				ENSSLDG00000012937	ENSSLDG00000012922	etsrp (ENSSLDG00000012889)	fli1rs (ENSSLDG00000012862)	ENSSLDG00000012849	ENSSLDG00000012835	ENSSLDG00000012818	ppt2a.2 (ENSSLDG00000012786)	dhx16 (ENSSLDG00000012742)	rnf183 (ENSSLDG00000012722)	mgat1a (ENSSLDG00000012708)	sh3bp5la (ENSSLDG00000012689)	GABBR1 (ENSSLDG00000012634) #22	tnfb (ENSSLDG00000012604)	ENSSLDG00000012591	ENSSLDG00000012579	glrx3 (ENSSLDG00000012568)	ENSSLDG00000012553	bag6 (ENSSLDG00000012455)	tspan13a (ENSSLDG00000012407)	ENSSLDG00000012383	gpatch4 (ENSSLDG00000012365)	ENSSLDG00000012240	lmna (ENSSLDG00000012145)	ENSSLDG00000012129	rab11al (ENSSLDG00000012116)	rab25b (ENSSLDG00000012091)	ubqln4 (ENSSLDG00000012080)
Barramundi perch	MODERN SPECIES	104	ENSLCAG00010001965	pycard (ENSLCAG00010001963)	ENSLCAG00010001961	ENSLCAG00010001960	etsrp (ENSLCAG00010001957)	fli1rs (ENSLCAG00010001952)	zp3d.2 (ENSLCAG00010001949)	ENSLCAG00010001946	ENSLCAG00010001945	ENSLCAG00010001942	ppt2a.2 (ENSLCAG00010001940)	dhx16 (ENSLCAG00010001827)	rnf183 (ENSLCAG00010001794)	mgat1a (ENSLCAG00010001792)	sh3bp5la (ENSLCAG00010001787)	GABBR1 (ENSLCAG00010001724) #22	tnfb (ENSLCAG00010001689)	ENSLCAG00010001682	ENSLCAG00010001680	glrx3 (ENSLCAG00010001678)	bag6 (ENSLCAG00010001641)	tspan13a (ENSLCAG00010001613)	ENSLCAG00010001609	ENSLCAG00010001606	gpatch4 (ENSLCAG00010001603)	ENSLCAG00010001595	lmna (ENSLCAG00010001534)	ENSLCAG00010001496	rab11al (ENSLCAG00010001475)	rab25b (ENSLCAG00010001467)	lamtor2 (ENSLCAG00010001456)
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00390000018560.a.a.b	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT00940000164898.d	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Turbot	MODERN SPECIES		si:ch211-225p5.8 (ENSSMAG00000004443)	ENSSMAG00000004423	ENSSMAG00000004434	pycard (ENSSMAG00000004414)	etsrp (ENSSMAG00000004381)	fli1rs (ENSSMAG00000004320)	zp3d.2 (ENSSMAG00000019495)	ENSSMAG00000028228	ENSSMAG00000019532	ppt2a.2 (ENSSMAG00000019543)	dhx16 (ENSSMAG00000019598)	rnf183 (ENSSMAG00000018734)	ENSSMAG00000033739	mgat1a (ENSSMAG00000016639)	sh3bp5la (ENSSMAG00000016628)	ENSSMAG00000016587 #22	TNF (ENSSMAG00000016564)	ENSSMAG00000016548	ENSSMAG00000016541	ENSSMAG00000016524	bag6 (ENSSMAG00000016500)	tspan13a (ENSSMAG00000016378)	ENSSMAG00000016351	ENSSMAG00000016340	ENSSMAG00000016329	ENSSMAG00000016239	LMNA (ENSSMAG00000016221)	ENSSMAG00000016216	rab11al (ENSSMAG00000016206)	rab25b (ENSSMAG00000016183)	lamtor2 (ENSSMAG00000016176)
Tongue sole	MODERN SPECIES	4	ENSCSEG00000012003	lmna (ENSCSEG00000012011)	ENSCSEG00000012025	gpatch4 (ENSCSEG00000012030)	bag6 (ENSCSEG00000012039)	glrx3 (ENSCSEG00000012085)	etsrp (ENSCSEG00000012087)	fli1rs (ENSCSEG00000012100)	ENSCSEG00000012120	dhx16 (ENSCSEG00000012134)	rnf183 (ENSCSEG00000012189)	ENSCSEG00000012198	mgat1a (ENSCSEG00000012203)	sh3bp5la (ENSCSEG00000012206)	ENSCSEG00000012218	GABBR1 (ENSCSEG00000012228) #22	tnfb (ENSCSEG00000012247)	si:ch211-225p5.8 (ENSCSEG00000012255)	si:ch211-225p5.8 (ENSCSEG00000012262)	ENSCSEG00000012268	psmc4 (ENSCSEG00000012275)	ethe1 (ENSCSEG00000012287)	xrcc1 (ENSCSEG00000012304)	ENSCSEG00000012336	ENSCSEG00000012340	mag (ENSCSEG00000012361)	cdk14 (ENSCSEG00000012376)	ENSCSEG00000012388	ENSCSEG00000012398	ADGRB1 (ENSCSEG00000012463)	si:ch211-198c19.1 (ENSCSEG00000012692)
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000178180	ENSGT00940000164898.d	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01100000263776	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Zig-zag eel	MODERN SPECIES	7	pycard (ENSMAMG00000009553)	pycard (ENSMAMG00000009507)	pycard (ENSMAMG00000009524)	ENSMAMG00000009577	ENSMAMG00000009586	etsrp (ENSMAMG00000009595)	fli1rs (ENSMAMG00000009621)	zp3d.2 (ENSMAMG00000009702)	ENSMAMG00000009731	ENSMAMG00000009754	ppt2a.2 (ENSMAMG00000009775)	dhx16 (ENSMAMG00000009784)	rnf183 (ENSMAMG00000027845)	mgat1a (ENSMAMG00000009866)	sh3bp5la (ENSMAMG00000009878)	ENSMAMG00000009911 #22	tnfb (ENSMAMG00000010016)	ENSMAMG00000010036	ENSMAMG00000010046	ENSMAMG00000010064	bag6 (ENSMAMG00000010081)	ENSMAMG00000010151	ENSMAMG00000010114	ENSMAMG00000010128	ENSMAMG00000010170	LMNA (ENSMAMG00000010224)	ENSMAMG00000010269	rab11al (ENSMAMG00000010278)	rab25b (ENSMAMG00000010297)	lamtor2 (ENSMAMG00000025086)	zgc:174938 (ENSMAMG00000010322)
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT00940000177379	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01100000263776	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Climbing perch	MODERN SPECIES	7	ENSATEG00000007051	ENSATEG00000007009	ENSATEG00000026894	pycard (ENSATEG00000007006)	etsrp (ENSATEG00000006957)	fli1rs (ENSATEG00000006908)	zp3d.2 (ENSATEG00000006855)	ENSATEG00000027864	ENSATEG00000006849	ENSATEG00000006811	ppt2a.2 (ENSATEG00000006774)	dhx16 (ENSATEG00000006665)	rnf183 (ENSATEG00000006657)	mgat1a (ENSATEG00000006650)	sh3bp5la (ENSATEG00000006630)	ENSATEG00000006492 #22	tnfb (ENSATEG00000006438)	ENSATEG00000006426	ENSATEG00000027255	ENSATEG00000028304	bag6 (ENSATEG00000006414)	tspan13a (ENSATEG00000006379)	ENSATEG00000006370	ENSATEG00000006359	ENSATEG00000006264	LMNA (ENSATEG00000006201)	ENSATEG00000006186	rab11al (ENSATEG00000006156)	rab25b (ENSATEG00000006124)	lamtor2 (ENSATEG00000006099)	zgc:174938 (ENSATEG00000006093)
Siamese fighting fish	MODERN SPECIES	7	si:ch211-225p5.8 (ENSBSLG00000016018)	ENSBSLG00000016033	ENSBSLG00000016042	ENSBSLG00000016046	ENSBSLG00000016051	ENSBSLG00000016053	etsrp (ENSBSLG00000016058)	fli1rs (ENSBSLG00000016063)	ENSBSLG00000016074	ENSBSLG00000016070	ppt2a.2 (ENSBSLG00000016080)	dhx16 (ENSBSLG00000016167)	rnf183 (ENSBSLG00000016543)	mgat1a (ENSBSLG00000016544)	sh3bp5la (ENSBSLG00000016546)	GABBR1 (ENSBSLG00000016851) #22	tnfb (ENSBSLG00000017875)	bag6 (ENSBSLG00000018200)	ENSBSLG00000018408	ENSBSLG00000018418	glrx3 (ENSBSLG00000018428)	tspan13a (ENSBSLG00000018453)	ENSBSLG00000018551	ENSBSLG00000018563	gpatch4 (ENSBSLG00000018588)	ENSBSLG00000018779	lmna (ENSBSLG00000018857)	ENSBSLG00000019060	rab11al (ENSBSLG00000019078)	rab25b (ENSBSLG00000019118)	lamtor2 (ENSBSLG00000019151)
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000154065.b	ENSGT00940000164898.d	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00940000181991	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01100000263776	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00940000154065.b	ENSGT00940000164898.d	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00940000181991	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01100000263776	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149
Ballan wrasse	MODERN SPECIES	219				ENSLBEG00000017478	etsrp (ENSLBEG00000017464)	fli1rs (ENSLBEG00000017412)	zp3d.2 (ENSLBEG00000017373)	ENSLBEG00000017357	ENSLBEG00000017329	ppt2a.2 (ENSLBEG00000017305)	dhx16 (ENSLBEG00000017249)	rnf183 (ENSLBEG00000017224)	mgat1a (ENSLBEG00000017206)	sh3bp5la (ENSLBEG00000017195)	ENSLBEG00000017182	GABBR1 (ENSLBEG00000017055) #22	tnfb (ENSLBEG00000016956)	ENSLBEG00000016944	glrx3 (ENSLBEG00000016920)	ENSLBEG00000016899	bag6 (ENSLBEG00000016665)	tspan13a (ENSLBEG00000016592)	ENSLBEG00000016567	ENSLBEG00000016540	ENSLBEG00000016514	ubqln4 (ENSLBEG00000016483)	lamtor2 (ENSLBEG00000016466)	rab25b (ENSLBEG00000016446)	rab11al (ENSLBEG00000016417)	ENSLBEG00000016402	lmna (ENSLBEG00000016348)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000154065.b	ENSGT00940000164898.d	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000154065.b	ENSGT00940000164898.d	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000161007	ENSGT00390000018560.a.a.b	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT00940000164898.d	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01100000263776	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100	ENSGT00940000155620.r	ENSGT00390000010118.c.a.a	ENSGT00510000051675.g
Stickleback	MODERN SPECIES	19	ENSGACG00000013568	ENSGACG00000013566	tnfaip8l2b (ENSGACG00000013563)	lysmd1 (ENSGACG00000013561)	scnm1 (ENSGACG00000013557)	tmod4 (ENSGACG00000013516)	mcl1b (ENSGACG00000013511)	ensab (ENSGACG00000013507)	hormad1 (ENSGACG00000013504)	onecutl (ENSGACG00000013501)	ctss2.1 (ENSGACG00000013470)	ctsk (ENSGACG00000013402)	lingo4b (ENSGACG00000013398)	dnali1 (ENSGACG00000013396)	sh3bp5la (ENSGACG00000013391)	GABBR1 (ENSGACG00000013381) #22	tnfb (ENSGACG00000013372)	bag6 (ENSGACG00000013337)	tspan13a (ENSGACG00000013330)	ENSGACG00000013327	ENSGACG00000013326	gpatch4 (ENSGACG00000013318)	ENSGACG00000013308	lmna (ENSGACG00000013285)	ENSGACG00000013282	rab11al (ENSGACG00000013259)	rab25b (ENSGACG00000013249)	lamtor2 (ENSGACG00000013237)	ubqln4 (ENSGACG00000013230)	zgc:174938 (ENSGACG00000013227)	tmem176l.4 (ENSGACG00000013220)
Lumpfish	MODERN SPECIES	17	GRAMD1A (ENSCLMG00005013804)	si:ch211-225p5.8 (ENSCLMG00005013754)	ENSCLMG00005013748	dnajc28 (ENSCLMG00005013741)	pycard (ENSCLMG00005013740)	ENSCLMG00005013739	etsrp (ENSCLMG00005013738)	fli1rs (ENSCLMG00005013731)	ENSCLMG00005013724	ENSCLMG00005013721	ppt2a.2 (ENSCLMG00005013700)	dhx16 (ENSCLMG00005012447)	rnf183 (ENSCLMG00005012428)	mgat1a (ENSCLMG00005012427)	sh3bp5la (ENSCLMG00005012425)	GABBR1 (ENSCLMG00005012336) #22	ENSCLMG00005012331	ENSCLMG00005012330	ENSCLMG00005012329	bag6 (ENSCLMG00005012328)	tspan13a (ENSCLMG00005012327)	ENSCLMG00005012326	gpatch4 (ENSCLMG00005012325)	ENSCLMG00005012134	lmna (ENSCLMG00005012130)	ENSCLMG00005012129	rab11al (ENSCLMG00005012089)	rab25b (ENSCLMG00005012088)	lamtor2 (ENSCLMG00005012087)	ubqln4 (ENSCLMG00005012086)	zgc:174938 (ENSCLMG00005012085)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000154065.b	ENSGT00940000164898.d	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Channel bull blenny	MODERN SPECIES	7	si:ch211-225p5.8 (ENSCGOG00000001854)	ENSCGOG00000001856	dnajc28 (ENSCGOG00000001858)	pycard (ENSCGOG00000001860)	ENSCGOG00000001863	etsrp (ENSCGOG00000001865)	fli1rs (ENSCGOG00000001869)	zp3d.2 (ENSCGOG00000001875)	ENSCGOG00000001878	ENSCGOG00000001879	ppt2a.2 (ENSCGOG00000001885)	dhx16 (ENSCGOG00000001992)	rnf183 (ENSCGOG00000002312)	mgat1a (ENSCGOG00000002315)	sh3bp5la (ENSCGOG00000002327)	GABBR1 (ENSCGOG00000002486) #22	tnfb (ENSCGOG00000004212)	ENSCGOG00000004238	glrx3 (ENSCGOG00000004243)	bag6 (ENSCGOG00000004255)	tspan13a (ENSCGOG00000004522)	ENSCGOG00000004525	ENSCGOG00000004528	gpatch4 (ENSCGOG00000004533)	lmna (ENSCGOG00000004574)	ENSCGOG00000005128	rab11al (ENSCGOG00000005129)	rab25b (ENSCGOG00000005132)	lamtor2 (ENSCGOG00000005147)	ubqln4 (ENSCGOG00000005155)	zgc:174938 (ENSCGOG00000005156)
Pike perch	MODERN SPECIES	104	ENSSLUG00000009395	pycard (ENSSLUG00000009390)	ENSSLUG00000009384	ENSSLUG00000009378	etsrp (ENSSLUG00000009375)	fli1rs (ENSSLUG00000009366)	zp3d.2 (ENSSLUG00000009364)	ENSSLUG00000009361	ENSSLUG00000009355	ENSSLUG00000009349	ppt2a.2 (ENSSLUG00000009180)	dhx16 (ENSSLUG00000006884)	rnf183 (ENSSLUG00000006750)	mgat1a (ENSSLUG00000006738)	sh3bp5la (ENSSLUG00000006731)	GABBR1 (ENSSLUG00000003495) #22	tnfb (ENSSLUG00000003070)	ENSSLUG00000003050	ENSSLUG00000003031	glrx3 (ENSSLUG00000003018)	bag6 (ENSSLUG00000002923)	tspan13a (ENSSLUG00000002897)	ENSSLUG00000002888	ENSSLUG00000002880	gpatch4 (ENSSLUG00000002872)
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT01020000230697	ENSGT00940000164898.d	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100	ENSGT00940000155620.r	ENSGT00390000010118.c.a.a	ENSGT00510000051675.g
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT01020000230697	ENSGT00940000164898.d	ENSGT01030000234768.a.a	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100	ENSGT00940000155620.r	ENSGT00390000010118.c.a.a	ENSGT00510000051675.g
European seabass	MODERN SPECIES	6	ENSDLAG00005028378	ENSDLAG00005002577	pycard (ENSDLAG00005028851)	ENSDLAG00005001066	ENSDLAG00005001058	etsrp (ENSDLAG00005001052)	fli1rs (ENSDLAG00005001042)	zp3d.2 (ENSDLAG00005001036)	ENSDLAG00005001032	ENSDLAG00005001030	ENSDLAG00005001025	ppt2a.2 (ENSDLAG00005001010)	dhx16 (ENSDLAG00005000817)	rnf183 (ENSDLAG00005029371)	rnf183 (ENSDLAG00005000783)	ENSDLAG00005000313 #22	tnfb (ENSDLAG00005009729)	ENSDLAG00005009718	ENSDLAG00005009704	ENSDLAG00005009690	bag6 (ENSDLAG00005009642)	tspan13a (ENSDLAG00005009625)	ENSDLAG00005009616	ENSDLAG00005035098	ENSDLAG00005009606	LMNA (ENSDLAG00005009437)	ENSDLAG00005033062	rab25b (ENSDLAG00005009338)	lamtor2 (ENSDLAG00005009320)	ENSDLAG00005026442	zgc:174938 (ENSDLAG00005014746)
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005014166	pycard (ENSLCRG00005014220)	pycard (ENSLCRG00005014230)	ENSLCRG00005014240	etsrp (ENSLCRG00005014252)	fli1rs (ENSLCRG00005014281)	zp3d.2 (ENSLCRG00005014296)	ENSLCRG00005014311	ENSLCRG00005014317	ENSLCRG00005014331	ppt2a.2 (ENSLCRG00005014344)	dhx16 (ENSLCRG00005014478)	rnf183 (ENSLCRG00005015496)	mgat1a (ENSLCRG00005015501)	sh3bp5la (ENSLCRG00005015502)	GABBR1 (ENSLCRG00005015709) #22	tnfb (ENSLCRG00005000649)	bag6 (ENSLCRG00005000687)	ENSLCRG00005000756	ENSLCRG00005000763	glrx3 (ENSLCRG00005000772)	tspan13a (ENSLCRG00005000782)	ENSLCRG00005000792	ENSLCRG00005000814	ENSLCRG00005000821	gpatch4 (ENSLCRG00005000831)	ENSLCRG00005000883	lmna (ENSLCRG00005001196)	rab11al (ENSLCRG00005001210)	ENSLCRG00005001266	rab25b (ENSLCRG00005001267)
Gilthead seabream	MODERN SPECIES	8	pycard (ENSSAUG00010023679)	ENSSAUG00010023684	ENSSAUG00010023685	ENSSAUG00010010084	etsrp (ENSSAUG00010010085)	fli1rs (ENSSAUG00010010087)	zp3d.2 (ENSSAUG00010010090)	ENSSAUG00010010094	ENSSAUG00010010096	ENSSAUG00010010099	ppt2a.2 (ENSSAUG00010010103)	dhx16 (ENSSAUG00010010144)	rnf183 (ENSSAUG00010012227)	mgat1a (ENSSAUG00010012229)	sh3bp5la (ENSSAUG00010012232)	GABBR1 (ENSSAUG00010012260) #22	tnfb (ENSSAUG00010013647)	ENSSAUG00010013648	ENSSAUG00010013650	glrx3 (ENSSAUG00010013651)	bag6 (ENSSAUG00010013653)	tspan13a (ENSSAUG00010013655)	ENSSAUG00010013656	ENSSAUG00010013657	ENSSAUG00010013658	ENSSAUG00010013659	gpatch4 (ENSSAUG00010013661)	ENSSAUG00010013666	lmna (ENSSAUG00010013671)	ENSSAUG00010013894	rab11al (ENSSAUG00010013897)
Tetraodontidae	ANCESTRAL SPECIES	130										ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a
Fugu	MODERN SPECIES	19	ENSTRUG00000026935	bola1 (ENSTRUG00000023229)	nr2f5 (ENSTRUG00000023437)	ENSTRUG00000004644	rpz (ENSTRUG00000023855)	rpz6 (ENSTRUG00000021390)	rpz5 (ENSTRUG00000024495)	rpz4 (ENSTRUG00000004687)	tmem176l.4 (ENSTRUG00000024272)	ENSTRUG00000026263	ppt2a.2 (ENSTRUG00000004692)	dhx16 (ENSTRUG00000004927)	rnf183 (ENSTRUG00000005306)	mgat1a (ENSTRUG00000005316)	sh3bp5la (ENSTRUG00000005397)	GABBR1 (ENSTRUG00000005601) #22	tnfa (ENSTRUG00000005908)	tnfb (ENSTRUG00000006012)	glrx3 (ENSTRUG00000022246)	bag6 (ENSTRUG00000006054)	tspan13a (ENSTRUG00000006323)	ENSTRUG00000024837	ENSTRUG00000029755	ENSTRUG00000006481	ENSTRUG00000007395	ENSTRUG00000032302	ankmy2a (ENSTRUG00000007409)	crppa (ENSTRUG00000023271)	agmo (ENSTRUG00000007716)	etv1 (ENSTRUG00000007749)	arl4aa (ENSTRUG00000008027)
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001794	rpz5 (ENSTNIG00000000513)	rpz4 (ENSTNIG00000005885)	ENSTNIG00000006117	dhx16 (ENSTNIG00000011641)	rnf183 (ENSTNIG00000002401)	ENSTNIG00000011642	mgat1a (ENSTNIG00000011643)	sh3bp5la (ENSTNIG00000011644)	ENSTNIG00000000469	ENSTNIG00000011645	ENSTNIG00000013817	ankmy2a (ENSTNIG00000011646)	crppa (ENSTNIG00000001407)	ENSTNIG00000002629	GABBR1 (ENSTNIG00000011647) #22	ENSTNIG00000000171	ENSTNIG00000002270	ENSTNIG00000001592	ENSTNIG00000011648	etv1 (ENSTNIG00000011650)	arl4aa (ENSTNIG00000000601)	THSD7A (ENSTNIG00000011651)	ENSTNIG00000011652	ICA1 (ENSTNIG00000011653)	mios (ENSTNIG00000011654)	ENSTNIG00000000520	septin7b (ENSTNIG00000011655)	nr1d2a (ENSTNIG00000011656)	ENSTNIG00000000401	ENSTNIG00000011657
Tetraodon	MODERN SPECIES	26	rpl7l1 (ENSTNIG00000019645)	ENSTNIG00000001738	ENSTNIG00000019591	ENSTNIG00000009969	myo1cb (ENSTNIG00000019590)	ENSTNIG00000019807	rgs16 (ENSTNIG00000019494)	ENSTNIG00000001823	ENSTNIG00000019464	LTO1 (ENSTNIG00000019843)	ENSTNIG00000001876	zgc:153867 (ENSTNIG00000019453)	ENSTNIG00000017064	ENSTNIG00000003600	ENSTNIG00000019787	ENSTNIG00000019522 #22	ENSTNIG00000019697	ENSTNIG00000019661	ENSTNIG00000019839	ENSTNIG00000019797	polr2g (ENSTNIG00000019445)	ENSTNIG00000001881	ENSTNIG00000019690	ENSTNIG00000019583	cldn26 (ENSTNIG00000019659)	ENSTNIG00000019671
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000177605	ENSGT00940000164898.d	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000177379	ENSGT00940000164898.d	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Pomacentridae	ANCESTRAL SPECIES	25	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00390000004674.i.a	ENSGT00980000198596.A	ENSGT00390000004674.j	ENSGT00940000169454	ENSGT00940000156132.g	ENSGT00940000164927.b	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a.k	ENSGT00940000155779.a.a.l	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165	ENSGT00940000165753	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a.k	ENSGT00940000155779.a.a.l	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Clown anemonefish	MODERN SPECIES	1794							ENSAOCG00000001765	ENSAOCG00000024262	ENSAOCG00000024255	ENSAOCG00000024248	ENSAOCG00000024233	dhx16 (ENSAOCG00000024217)	rnf183 (ENSAOCG00000024174)	mgat1a (ENSAOCG00000002181)	sh3bp5la (ENSAOCG00000024157)	GABBR1 (ENSAOCG00000024113) #22	tnfb (ENSAOCG00000024044)	ENSAOCG00000001758	ENSAOCG00000024032	ENSAOCG00000024023	glrx3 (ENSAOCG00000024017)	bag6 (ENSAOCG00000024008)
Orange clownfish	MODERN SPECIES	21	mtmr11 (ENSAPEG00000022797)	ENSAPEG00000022792	SV2A (ENSAPEG00000022757)	bola1 (ENSAPEG00000022655)	nr2f5 (ENSAPEG00000022639)	ENSAPEG00000022616	ENSAPEG00000022594	ENSAPEG00000022575	ENSAPEG00000022563	ENSAPEG00000022546	dhx16 (ENSAPEG00000022508)	rnf183 (ENSAPEG00000022495)	mgat1a (ENSAPEG00000022450)	sh3bp5la (ENSAPEG00000022428)	ENSAPEG00000022418	GABBR1 (ENSAPEG00000022372) #22	tnfb (ENSAPEG00000022358)	ENSAPEG00000022349	ENSAPEG00000022341	ENSAPEG00000022323	glrx3 (ENSAPEG00000022313)	bag6 (ENSAPEG00000022296)	tspan13a (ENSAPEG00000022280)	ENSAPEG00000022274	ENSAPEG00000022257	gpatch4 (ENSAPEG00000022243)	ENSAPEG00000022213	lmna (ENSAPEG00000022176)	ENSAPEG00000022160	rab11al (ENSAPEG00000022135)	rab25b (ENSAPEG00000022106)
Spiny chromis	MODERN SPECIES	356											ENSAPOG00000008841	dhx16 (ENSAPOG00000008825)	rnf183 (ENSAPOG00000008763)	mgat1a (ENSAPOG00000008749)	sh3bp5la (ENSAPOG00000008737)	GABBR1 (ENSAPOG00000008685) #22	tnfb (ENSAPOG00000008608)	ENSAPOG00000008580	ENSAPOG00000008558	glrx3 (ENSAPOG00000008544)	bag6 (ENSAPOG00000008519)	tspan13a (ENSAPOG00000008502)	ENSAPOG00000008476	ENSAPOG00000008444	gpatch4 (ENSAPOG00000008436)	ENSAPOG00000008403	lmna (ENSAPOG00000008317)	ENSAPOG00000008262	rab11al (ENSAPOG00000008251)	rab25b (ENSAPOG00000008216)	lamtor2 (ENSAPOG00000008180)
Bicolor damselfish	MODERN SPECIES	458	rbm8a (ENSSPAG00000012181)	otud7b (ENSSPAG00000012196)	mtmr11 (ENSSPAG00000012227)	ENSSPAG00000012272	SV2A (ENSSPAG00000012284)	bola1 (ENSSPAG00000012313)	nr2f5 (ENSSPAG00000012324)	ENSSPAG00000012342	ENSSPAG00000012362	ppt2a.2 (ENSSPAG00000012385)	dhx16 (ENSSPAG00000012416)	rnf183 (ENSSPAG00000012532)	mgat1a (ENSSPAG00000012552)	sh3bp5la (ENSSPAG00000012567)	ENSSPAG00000012571	ENSSPAG00000012594 #22	tnfb (ENSSPAG00000012619)	ENSSPAG00000012635	ENSSPAG00000012646	glrx3 (ENSSPAG00000012656)	bag6 (ENSSPAG00000012678)	tspan13a (ENSSPAG00000012698)	ENSSPAG00000012726
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000177379.a	ENSGT00940000164898.d	ENSGT01030000234768.a.a.a	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT01100000264191	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	1257		iqgap3 (ENSACIG00000022016)	pycard (ENSACIG00000022007)	ENSACIG00000022002	etsrp (ENSACIG00000021993)	fli1rs (ENSACIG00000021979)	zp3d.2 (ENSACIG00000021967)	ENSACIG00000021957	ENSACIG00000021944	ENSACIG00000021923	ppt2a.2 (ENSACIG00000021868)	dhx16 (ENSACIG00000021825)	rnf183 (ENSACIG00000021816)	mgat1a (ENSACIG00000021809)	sh3bp5la (ENSACIG00000021795)	GABBR1 (ENSACIG00000021766) #22	GALNT12 (ENSACIG00000021730)	poc1bl (ENSACIG00000021700)	rp9 (ENSACIG00000021679)	elmo1 (ENSACIG00000021643)	pex1 (ENSACIG00000021560)	efcab1 (ENSACIG00000021546)	rbm48 (ENSACIG00000021495)	sytl1 (ENSACIG00000021196)	ENSACIG00000021166	gpr3 (ENSACIG00000021155)	wasf2 (ENSACIG00000021139)	AHDC1 (ENSACIG00000021132)	yrk (ENSACIG00000021107)	sesn2 (ENSACIG00000021080)	matn1 (ENSACIG00000021057)
Midas cichlid	MODERN SPECIES	1584																ENSACIG00000001205 #22
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000177379.a	ENSGT00940000164898.d	ENSGT01030000234768.a.a.a	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT01100000264191	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Nile tilapia	MODERN SPECIES	2	ENSONIG00000027994	ENSONIG00000034594	pycard (ENSONIG00000002216)	etsrp (ENSONIG00000002217)	fli1rs (ENSONIG00000037337)	zp3d.2 (ENSONIG00000002226)	ENSONIG00000037771	ENSONIG00000002229	ENSONIG00000022720	ppt2a.2 (ENSONIG00000002230)	dhx16 (ENSONIG00000002234)	rnf183 (ENSONIG00000039907)	mgat1a (ENSONIG00000002240)	sh3bp5la (ENSONIG00000002241)	ENSONIG00000034000	GABBR1 (ENSONIG00000002243) #22	tnfb (ENSONIG00000002250)	ENSONIG00000034719	ENSONIG00000042885	glrx3 (ENSONIG00000020845)	bag6 (ENSONIG00000002253)	tspan13a (ENSONIG00000002257)	ENSONIG00000002258	ENSONIG00000002260	gpatch4 (ENSONIG00000030651)	ENSONIG00000002264	lmna (ENSONIG00000002271)	ENSONIG00000002279	rab11al (ENSONIG00000002281)	rab25b (ENSONIG00000002284)	lamtor2 (ENSONIG00000002285)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000176861.b.a	ENSGT00940000164898.d	ENSGT01030000234768.a.a.a	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT01100000264191	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Lyretail cichlid	MODERN SPECIES	373				pycard (ENSNBRG00000006064)	pycard (ENSNBRG00000005938)	etsrp (ENSNBRG00000005902)	fli1rs (ENSNBRG00000005884)	zp3d.2 (ENSNBRG00000005833)	ENSNBRG00000005798	ENSNBRG00000005768	ppt2a.2 (ENSNBRG00000005682)	dhx16 (ENSNBRG00000005624)	rnf183 (ENSNBRG00000005595)	mgat1a (ENSNBRG00000005572)	sh3bp5la (ENSNBRG00000005556)	GABBR1 (ENSNBRG00000005506) #22	tnfb (ENSNBRG00000005485)	ENSNBRG00000005466	glrx3 (ENSNBRG00000005445)	ENSNBRG00000005433	tspan13a (ENSNBRG00000005407)	ENSNBRG00000005385	ENSNBRG00000005276	LMNA (ENSNBRG00000005177)	ENSNBRG00000005141	rab11al (ENSNBRG00000005116)	rab25b (ENSNBRG00000005097)	lamtor2 (ENSNBRG00000005083)	zgc:174938 (ENSNBRG00000005060)	ENSNBRG00000005029	ENSNBRG00000005005
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000166384.f	ENSGT00940000164898.d	ENSGT01030000234768.a.a.a	ENSGT00940000166384.e	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT01100000264191	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Haplochromini_A	ANCESTRAL SPECIES	27		ENSGT01030000234768.a.a.a	ENSGT00940000164898.d	ENSGT00940000166384.f	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT01100000264191	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Haplochromini_B	ANCESTRAL SPECIES	6		ENSGT00940000164898.d.d	ENSGT01030000234768.a.a.a	ENSGT00940000164898.d.c	ENSGT00940000166384.f	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT01100000264191	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Eastern happy	MODERN SPECIES	2	ENSACLG00000011258	ENSACLG00000011255	pycard (ENSACLG00000011248)	ENSACLG00000011242	etsrp (ENSACLG00000011212)	fli1rs (ENSACLG00000011166)	zp3d.2 (ENSACLG00000011146)	ENSACLG00000011133	ENSACLG00000011107	ENSACLG00000011088	ppt2a.2 (ENSACLG00000011072)	dhx16 (ENSACLG00000010932)	rnf183 (ENSACLG00000010912)	mgat1a (ENSACLG00000010896)	sh3bp5la (ENSACLG00000010869)	GABBR1 (ENSACLG00000010781) #22	tnfb (ENSACLG00000010621)	ENSACLG00000010614	ENSACLG00000010600	glrx3 (ENSACLG00000010585)	bag6 (ENSACLG00000010554)	tspan13a (ENSACLG00000010530)	ENSACLG00000010519	ENSACLG00000010509	gpatch4 (ENSACLG00000010456)	ENSACLG00000010393	lmna (ENSACLG00000010359)	ENSACLG00000010278	rab11al (ENSACLG00000010268)	rab25b (ENSACLG00000010251)	lamtor2 (ENSACLG00000010245)
Zebra mbuna	MODERN SPECIES	1093	cmtm7 (ENSMZEG00005017281)	ENSMZEG00005017285	ENSMZEG00005017291	ENSMZEG00005017294	ENSMZEG00005017298	SLC4A7 (ENSMZEG00005017304)	zgc:153896 (ENSMZEG00005017328)	mrps12 (ENSMZEG00005017336)	ENSMZEG00005017342	tmem116 (ENSMZEG00005017344)	ENSMZEG00005017349	ccr6a (ENSMZEG00005017355)	ENSMZEG00005017358	rpp25l (ENSMZEG00005017361)	ENSMZEG00005017367	GABBR1 (ENSMZEG00005017378) #22	tnfb (ENSMZEG00005017389)	ENSMZEG00005017394	ENSMZEG00005017397	glrx3 (ENSMZEG00005017408)	bag6 (ENSMZEG00005017413)	tspan13a (ENSMZEG00005017429)	ENSMZEG00005017437	ENSMZEG00005017441	gpatch4 (ENSMZEG00005017452)	ENSMZEG00005017469	lmna (ENSMZEG00005017491)	ENSMZEG00005017507	rab11al (ENSMZEG00005017514)	rab25b (ENSMZEG00005017522)	lamtor2 (ENSMZEG00005017526)
P. nyererei	MODERN SPECIES	588						ENSPNYG00000019181	etsrp (ENSPNYG00000019162)	fli1rs (ENSPNYG00000019138)	ENSPNYG00000019125	ENSPNYG00000019080	ppt2a.1 (ENSPNYG00000018844)	dhx16 (ENSPNYG00000018755)	rnf183 (ENSPNYG00000018739)	mgat1a (ENSPNYG00000018728)	sh3bp5la (ENSPNYG00000018707)	GABBR1 (ENSPNYG00000018663) #22	tnfb (ENSPNYG00000018642)	ENSPNYG00000018635	ENSPNYG00000018609	glrx3 (ENSPNYG00000018588)	bag6 (ENSPNYG00000018572)	tspan13a (ENSPNYG00000018549)	ENSPNYG00000018521	gpatch4 (ENSPNYG00000018461)	ENSPNYG00000018351	lmna (ENSPNYG00000018288)	ENSPNYG00000018270	rab11al (ENSPNYG00000018244)	rab25b (ENSPNYG00000018214)	lamtor2 (ENSPNYG00000018197)	zgc:174938 (ENSPNYG00000018177)
Burton s mouthbrooder	DUPLICATION
Burton s mouthbrooder	MODERN SPECIES	327		ENSHBUG00000010071	pycard (ENSHBUG00000010055)	ENSHBUG00000010041	etsrp (ENSHBUG00000010028)	fli1rs (ENSHBUG00000010018)	zp3d.2 (ENSHBUG00000010003)	ENSHBUG00000009994	ENSHBUG00000009984	ppt2a.2 (ENSHBUG00000000750)	dhx16 (ENSHBUG00000009952)	rnf183 (ENSHBUG00000009899)	mgat1a (ENSHBUG00000009888)	sh3bp5la (ENSHBUG00000009874)	ENSHBUG00000009836	GABBR1 (ENSHBUG00000009828) #22	tnfb (ENSHBUG00000009771)	ENSHBUG00000009763	ENSHBUG00000009753	bag6 (ENSHBUG00000009738)	tspan13a (ENSHBUG00000009721)	ENSHBUG00000009694	ENSHBUG00000009684	gpatch4 (ENSHBUG00000009675)	ENSHBUG00000009589	lmna (ENSHBUG00000009419)	ENSHBUG00000009342	rab11al (ENSHBUG00000009333)	rab25b (ENSHBUG00000009320)	lamtor2 (ENSHBUG00000009286)	zgc:174938 (ENSHBUG00000009267)
Burton s mouthbrooder	MODERN SPECIES	1032																ENSHBUG00000008614 #22	tnfa (ENSHBUG00000008608)	atat1 (ENSHBUG00000008578)	ENSHBUG00000008519	bag6l (ENSHBUG00000008504)	si:ch211-215a10.4 (ENSHBUG00000008484)	abcf1 (ENSHBUG00000008460)	mrps18b (ENSHBUG00000008445)	ppp1r10 (ENSHBUG00000008436)	agr2 (ENSHBUG00000008422)	tspan13b (ENSHBUG00000008387)	sostdc1b (ENSHBUG00000008377)
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000177605	ENSGT00940000164898.d.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246.a	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Oryzias	ANCESTRAL SPECIES	2	ENSGT00390000011734	ENSGT00440000034270.a.b	ENSGT00530000063023.B	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.b.a	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT00940000167246.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246.a	ENSGT00940000177047.D	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00440000034270.a.b	ENSGT00530000063023.B	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.b.a.a.a	ENSGT00940000155779.b.a.a.b	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT00940000167246.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.h	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.g.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.g.a.b	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149
Indian medaka	MODERN SPECIES	33	etsrp (ENSOMEG00000000897)	fli1rs (ENSOMEG00000018957)	zp3d.2 (ENSOMEG00000019006)	ENSOMEG00000019038	ENSOMEG00000019060	ENSOMEG00000019088	ENSOMEG00000019109	ENSOMEG00000019387	ENSOMEG00000019486	ppt2a.2 (ENSOMEG00000019502)	dhx16 (ENSOMEG00000019560)	rnf183 (ENSOMEG00000019573)	mgat1a (ENSOMEG00000019586)	sh3bp5la (ENSOMEG00000019617)	tnfb (ENSOMEG00000019631)	ENSOMEG00000019713 #22	ENSOMEG00000019740	ENSOMEG00000019776	glrx3 (ENSOMEG00000019791)	bag6 (ENSOMEG00000019836)	tspan13a (ENSOMEG00000019862)	ENSOMEG00000019893	ENSOMEG00000019944	ENSOMEG00000019967	ENSOMEG00000019992	ENSOMEG00000020005	ENSOMEG00000020028	ENSOMEG00000020042	ENSOMEG00000020059	ENSOMEG00000020071	ENSOMEG00000020082
Javanese ricefish	MODERN SPECIES	7	THSD7A (ENSOJAG00000020709)	ENSOJAG00000001964	ICA1 (ENSOJAG00000001980)	GLCCI1 (ENSOJAG00000002093)	mios (ENSOJAG00000002131)	ENSOJAG00000002151	ENSOJAG00000002157	PLCL2 (ENSOJAG00000002226)	ENSOJAG00000002425	ENSOJAG00000002465	si:dkey-82o10.4 (ENSOJAG00000002477)	ppt2a.2 (ENSOJAG00000002484)	dhx16 (ENSOJAG00000002533)	mgat1a (ENSOJAG00000002663)	sh3bp5la (ENSOJAG00000002673)	ENSOJAG00000002723 #22	tnfb (ENSOJAG00000002856)	ENSOJAG00000002860	ENSOJAG00000002868	glrx3 (ENSOJAG00000002871)	bag6 (ENSOJAG00000002901)	tspan13a (ENSOJAG00000003124)	ENSOJAG00000003134	ENSOJAG00000003137	ENSOJAG00000003193	ENSOJAG00000003211	septin7b (ENSOJAG00000003300)	ENSOJAG00000004329	ENSOJAG00000004364	ENSOJAG00000004397	ENSOJAG00000004411
Oryzias_a	ANCESTRAL SPECIES	37	ENSGT00940000158130	ENSGT00390000011734	ENSGT00440000034270.a.b	ENSGT00940000155746	ENSGT00530000063023.B	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT00940000167246.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.e	ENSGT00940000177047.D.b	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000015945	ENSORLG00000023678	ENSORLG00000028753	ENSORLG00000026300	ENSORLG00000030239	ENSORLG00000030371	ENSORLG00000029591	ENSORLG00000025297	ENSORLG00000022507	ENSORLG00000024124	ppt2a.2 (ENSORLG00000015959)	dhx16 (ENSORLG00000015982)	rnf183 (ENSORLG00000029845)	mgat1a (ENSORLG00000015989)	sh3bp5la (ENSORLG00000015993)	ENSORLG00000016024 #22	ENSORLG00000022264	tnfb (ENSORLG00000016035)	ENSORLG00000030356	ENSORLG00000016040	glrx3 (ENSORLG00000025941)	bag6 (ENSORLG00000016065)	tspan13a (ENSORLG00000016079)	ENSORLG00000028812	ENSORLG00000016084	ENSORLG00000029078	ENSORLG00000026666	ENSORLG00000029113	ENSORLG00000023194	ENSORLG00000028854	ENSORLG00000016096
Chinese medaka	MODERN SPECIES	286	ptpn23a (ENSOSIG00000004597)	SCAP (ENSOSIG00000004969)	elp6 (ENSOSIG00000004984)	CSPG5 (ENSOSIG00000004989)	ENSOSIG00000005038	dpy19l1l (ENSOSIG00000007792)	etsrp (ENSOSIG00000009089)	fli1rs (ENSOSIG00000009094)	ENSOSIG00000009099	ENSOSIG00000009100	ppt2a.2 (ENSOSIG00000009103)	dhx16 (ENSOSIG00000009123)	rnf183 (ENSOSIG00000012613)	mgat1a (ENSOSIG00000012615)	sh3bp5la (ENSOSIG00000012617)	GABBR1 (ENSOSIG00000012666) #22	tnfb (ENSOSIG00000013918)	ENSOSIG00000013986	glrx3 (ENSOSIG00000013987)	tspan13a (ENSOSIG00000013991)
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000177379	ENSGT01030000234768.a.b	ENSGT00940000164898.d.a	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246.a.a.a	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a	ENSGT00390000006100
Aplocheiloidei	ANCESTRAL SPECIES	51	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT00940000177379	ENSGT01030000234768.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480.f	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01020000231532
Mangrove rivulus	MODERN SPECIES	498			ENSKMAG00000009508	ENSKMAG00000009493	etsrp (ENSKMAG00000009482)	fli1rs (ENSKMAG00000009451)	zp3d.2 (ENSKMAG00000009424)	ENSKMAG00000009401	ENSKMAG00000009366	ppt2a.2 (ENSKMAG00000009344)	dhx16 (ENSKMAG00000009246)	rnf183 (ENSKMAG00000009208)	mgat1a (ENSKMAG00000009186)	sh3bp5la (ENSKMAG00000009174)	ENSKMAG00000009162	GABBR1 (ENSKMAG00000009103) #22
Turquoise killifish	MODERN SPECIES	114																GABBR1 (ENSNFUG00015018606) #22	tnfb (ENSNFUG00015018588)	ENSNFUG00015018585	ENSNFUG00015018584	BAG6 (ENSNFUG00015018578)	glrx3 (ENSNFUG00015018576)	TSPAN13A (ENSNFUG00015018573)	ENSNFUG00015018567	ENSNFUG00015018560
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000178180	ENSGT01030000234768.a.b	ENSGT00940000164898.d.a.a	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT01030000234575.c.a.a.a.a.a.b.b.a	ENSGT00940000167246.a.a.a.b	ENSGT00940000167246.a.a.b	ENSGT00390000008765	ENSGT00940000155333.B	ENSGT00940000157244.a.b	ENSGT00940000166523	ENSGT00940000165149	ENSGT00940000158230.b.a
Poeciliinae	ANCESTRAL SPECIES		ENSGT01030000234768.a.b	ENSGT00940000164898.d.a.a	ENSGT00940000164898.d.a.b	ENSGT00940000162428.g.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT00940000174114	ENSGT01020000230673.B	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.i.a.a	ENSGT00940000167246.a.a.a.b.a.b	ENSGT00940000167246.a.a.a.b.a.a	ENSGT01030000234575.c.a.a.a.a.a.b.b.a.j	ENSGT00940000167246.a.a.a.a	ENSGT00390000008765	ENSGT00940000155333.B
Poecilia	ANCESTRAL SPECIES	91	ENSGT01030000234768.a.b	ENSGT00940000164898.d.a.a	ENSGT00940000164898.d.a.b	ENSGT00940000162428.g.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT00940000174114.b	ENSGT00940000174114.a	ENSGT01020000230673.B
NAME_6	ANCESTRAL SPECIES	210	ENSGT01030000234768.a.b	ENSGT00940000164898.d.a.a	ENSGT00940000164898.d.a.b	ENSGT00940000162428.g.a.b	ENSGT00940000166384	ENSGT00940000165943	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000181991	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT00940000174114.b	ENSGT00940000174114.a	ENSGT01020000230673.B
Amazon molly	MODERN SPECIES	644	ENSPFOG00000003525	ENSPFOG00000003512	ENSPFOG00000003485	pycard (ENSPFOG00000003456)	ENSPFOG00000003417	etsrp (ENSPFOG00000003374)	fli1rs (ENSPFOG00000003178)	zp3d.2 (ENSPFOG00000003129)	ENSPFOG00000003124	ENSPFOG00000023106	ppt2a.2 (ENSPFOG00000002968)	dhx16 (ENSPFOG00000002575)	rnf183 (ENSPFOG00000020672)	mgat1a (ENSPFOG00000002557)	sh3bp5la (ENSPFOG00000002466)	GABBR1 (ENSPFOG00000001810) #22	tnfb (ENSPFOG00000001490)	ENSPFOG00000001469	glrx3 (ENSPFOG00000020671)	bag6 (ENSPFOG00000001221)	tspan13a (ENSPFOG00000001110)	ENSPFOG00000024435	ENSPFOG00000001088	ENSPFOG00000022902	ENSPFOG00000001065
Sailfin molly	MODERN SPECIES	384	ENSPLAG00000013713	ENSPLAG00000013719	ENSPLAG00000013739	ENSPLAG00000013789	etsrp (ENSPLAG00000013830)	fli1rs (ENSPLAG00000013868)	zp3d.2 (ENSPLAG00000013897)	ENSPLAG00000013903	ENSPLAG00000013913	ppt2a.2 (ENSPLAG00000014241)	dhx16 (ENSPLAG00000014305)	rnf183 (ENSPLAG00000014317)	mgat1a (ENSPLAG00000014328)	sh3bp5la (ENSPLAG00000014337)	ENSPLAG00000014367	GABBR1 (ENSPLAG00000014399) #22	GPR52 (ENSPLAG00000014406)	ENSPLAG00000014427	ENSPLAG00000014458
Guppy	MODERN SPECIES	446	ENSPREG00000002703	ENSPREG00000002714	ENSPREG00000002719	ENSPREG00000002730	pycard (ENSPREG00000002741)	ENSPREG00000002770	etsrp (ENSPREG00000002788)	fli1rs (ENSPREG00000002822)	zp3d.2 (ENSPREG00000002856)	ENSPREG00000002863	ENSPREG00000002876	ppt2a.2 (ENSPREG00000002946)	dhx16 (ENSPREG00000003371)	mgat1a (ENSPREG00000003466)	sh3bp5la (ENSPREG00000003480)	GABBR1 (ENSPREG00000003518) #22	tnfb (ENSPREG00000003585)	ENSPREG00000003598	ENSPREG00000003625	glrx3 (ENSPREG00000003648)	bag6 (ENSPREG00000003677)	tspan13a (ENSPREG00000003818)	ENSPREG00000003838	ENSPREG00000003849	ENSPREG00000003866	rab5ab (ENSPREG00000003887)	ENSPREG00000003912	si:dkey-82o10.4 (ENSPREG00000003946)	ENSPREG00000003992	PLCL2 (ENSPREG00000004061)	ENSPREG00000004098
Platyfish	MODERN SPECIES	17	ENSXMAG00000026793	ENSXMAG00000013280	pycard (ENSXMAG00000013282)	ENSXMAG00000020980	etsrp (ENSXMAG00000017104)	fli1rs (ENSXMAG00000017105)	zp3d.2 (ENSXMAG00000020967)	ENSXMAG00000023937	ENSXMAG00000013283	ppt2a.1 (ENSXMAG00000024781)	dhx16 (ENSXMAG00000013293)	rnf183 (ENSXMAG00000021926)	mgat1a (ENSXMAG00000013310)	sh3bp5la (ENSXMAG00000013312)	ENSXMAG00000025853	GABBR1 (ENSXMAG00000013315) #22	tnfb (ENSXMAG00000013364)	ENSXMAG00000026917	ENSXMAG00000013375	glrx3 (ENSXMAG00000019534)	bag6 (ENSXMAG00000013377)	tspan13a (ENSXMAG00000013380)	ENSXMAG00000024418	ENSXMAG00000023126	ENSXMAG00000025797	ENSXMAG00000013389	ENSXMAG00000023200	ENSXMAG00000011982	ENSXMAG00000028796	ENSXMAG00000026134	ENSXMAG00000002563
NAME_4	ANCESTRAL SPECIES	210			ENSGT00940000164898.d.a.a	ENSGT00940000166384	ENSGT00940000165943	ENSGT00390000002843.a	ENSGT00950000183190.a.a.b.d	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a.j	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT00940000167246.a.a.a.b	ENSGT01030000234575.c.a.a.a.a.a.b.b.a
Mummichog	MODERN SPECIES	629										dhx16 (ENSFHEG00000021509)	rnf183 (ENSFHEG00000021522)	mgat1a (ENSFHEG00000021533)	sh3bp5la (ENSFHEG00000021539)	ENSFHEG00000021593	ENSFHEG00000021603	GABBR1 (ENSFHEG00000021663) #22	tnfb (ENSFHEG00000021671)	ENSFHEG00000021679	ENSFHEG00000021682	glrx3 (ENSFHEG00000021692)	ENSFHEG00000021717
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1673																GABBR1 (ENSCVAG00000020098) #22	ENSCVAG00000020104	ENSCVAG00000020120	ENSCVAG00000020128	glrx3 (ENSCVAG00000020149)
Sheepshead minnow	MODERN SPECIES	1619											ENSCVAG00000004276	ENSCVAG00000004323	xkr8.3 (ENSCVAG00000004332)	srsf4 (ENSCVAG00000004342)	msto1 (ENSCVAG00000004362)	ENSCVAG00000004369 #22
Pinecone sodierfish	MODERN SPECIES	7	pycard (ENSMMDG00005002096)	pycard (ENSMMDG00005002104)	ENSMMDG00005002111	ENSMMDG00005002117	etsrp (ENSMMDG00005002118)	fli1rs (ENSMMDG00005002123)	zp3d.2 (ENSMMDG00005002125)	ENSMMDG00005002130	ENSMMDG00005002133	ENSMMDG00005002138	ppt2a.2 (ENSMMDG00005002153)	dhx16 (ENSMMDG00005002182)	rnf183 (ENSMMDG00005002378)	mgat1a (ENSMMDG00005002382)	sh3bp5la (ENSMMDG00005002384)	GABBR1 (ENSMMDG00005002394) #22	tnfb (ENSMMDG00005002511)	ENSMMDG00005002651	ENSMMDG00005002662	glrx3 (ENSMMDG00005002672)	bag6 (ENSMMDG00005002697)	tspan13a (ENSMMDG00005002755)	ENSMMDG00005002766	ENSMMDG00005002779	gpatch4 (ENSMMDG00005002789)	ENSMMDG00005002812	lmna (ENSMMDG00005003027)	ENSMMDG00005003040	rab11al (ENSMMDG00005003043)	rab25b (ENSMMDG00005003050)	lamtor2 (ENSMMDG00005003058)
Cod	MODERN SPECIES	2	si:ch211-225p5.8 (ENSGMOG00000006740)	ENSGMOG00000029056	pycard (ENSGMOG00000022505)	pycard (ENSGMOG00000031731)	ENSGMOG00000026402	ENSGMOG00000023368	etsrp (ENSGMOG00000037126)	fli1rs (ENSGMOG00000023589)	ENSGMOG00000035205	ENSGMOG00000027086	ppt2a.1 (ENSGMOG00000035249)	dhx16 (ENSGMOG00000009282)	rnf183 (ENSGMOG00000027546)	mgat1a (ENSGMOG00000009234)	sh3bp5la (ENSGMOG00000026786)	ENSGMOG00000033726 #22	tnfb (ENSGMOG00000013963)	ENSGMOG00000025015	ENSGMOG00000023903	bag6 (ENSGMOG00000013765)	ENSGMOG00000037035	ENSGMOG00000023690	ENSGMOG00000006483	LMNA (ENSGMOG00000006470)	ENSGMOG00000029153	rab11al (ENSGMOG00000006450)	rab25b (ENSGMOG00000006444)	lamtor2 (ENSGMOG00000006440)	zgc:174938 (ENSGMOG00000006435)	tmem176l.4 (ENSGMOG00000007682)	ENSGMOG00000007686
Protacanthopterygii	ANCESTRAL SPECIES	12	ENSGT00390000018560.a.a.a.a.a	ENSGT00940000161007	ENSGT00390000018560.a.a.b	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT00940000164898	ENSGT00940000166384	ENSGT00940000165943	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00940000157642.g #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205959	ENSGT00940000169242	ENSGT00390000001026	ENSGT00390000016199.a	ENSGT00940000157010.m	ENSGT00390000016820.d	ENSGT00940000165642	ENSGT00390000014900.b.a	ENSGT00390000006412	ENSGT00940000154018.b.b	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	154	ENSGT00390000018560.a.a.a.a.a.d	ENSGT00940000161007.k.a	ENSGT00390000018560.a.a.b.c	ENSGT00940000154497.A.d	ENSGT00940000154065.b	ENSGT00940000164898.i	ENSGT00940000166384.c	ENSGT00940000166384.d	ENSGT00940000165943.c	ENSGT00980000198705.b	ENSGT00940000155779.a.a.g	ENSGT00940000158480.c	ENSGT00940000166999.B.c	ENSGT00530000063632.B.b.d	ENSGT00390000018500.a.d.d	ENSGT00940000157642.g.k #22	ENSGT01060000248544.a.b.b.a.c	ENSGT00990000205959.b	ENSGT00940000169242	ENSGT00390000016199.a.c	ENSGT00940000157010.m.a	ENSGT00390000016820.d.f	ENSGT00390000014900.b.a.d	ENSGT00390000006412	ENSGT00940000154018.b.b.b	ENSGT00440000033807.d.b.a.a
Salmoninae_a	ANCESTRAL SPECIES	39	ENSGT00390000018560.a.a.a.a.a.d.b.a	ENSGT00940000161007.k.a	ENSGT00390000018560.a.a.b.c	ENSGT00940000154497.A.d	ENSGT00940000154065.b	ENSGT00940000164898.i.b	ENSGT00940000166384.d	ENSGT00940000165943.c	ENSGT00390000002843.a.f	ENSGT00980000198705.b	ENSGT00940000155779.a.a.g	ENSGT00940000158480.c	ENSGT00940000166999.B.c	ENSGT00530000063632.B.b.d	ENSGT00390000018500.a.d.d	ENSGT00940000157642.g.k #22	ENSGT01060000248544.a.b.b.a.c	ENSGT00990000205959.b	ENSGT00390000016199.a.c	ENSGT00940000157010.m.a	ENSGT00390000016820.d.f	ENSGT00390000014900.b.a.d	ENSGT00390000006412.g	ENSGT00940000154018.b.b.b	ENSGT00440000033807.d.b.b	ENSGT00940000159770.g.b	ENSGT00940000157123.m	ENSGT00940000154546.a.r	ENSGT00940000163868.b	ENSGT00940000166910.a	ENSGT00940000160835.f.a
Salmo	ANCESTRAL SPECIES	1	ENSGT00390000018560.a.a.a.a.a.d.b.a	ENSGT00940000161007.k.a	ENSGT00390000018560.a.a.b.c	ENSGT00940000154497.A.d	ENSGT00940000154065.b	ENSGT00940000164898.i.b	ENSGT00940000166384.d	ENSGT00940000165943.c	ENSGT00390000002843.a.f	ENSGT00980000198705.b	ENSGT00940000155779.a.a.g	ENSGT00940000158480.c	ENSGT00940000166999.B.c	ENSGT00530000063632.B.b.d	ENSGT00390000018500.a.d.d	ENSGT00940000157642.g.k #22	ENSGT01060000248544.a.b.b.a.c	ENSGT00990000205959.b	ENSGT00390000016199.a.c	ENSGT00940000157010.m.a	ENSGT00390000016820.d.f	ENSGT00390000014900.b.a.d	ENSGT00390000006412.g	ENSGT00940000154018.b.b.b	ENSGT00440000033807.d.b.a.a	ENSGT00940000159770.g.b	ENSGT00940000157123.m	ENSGT00940000154546.a.r	ENSGT00940000163868.b	ENSGT00940000166910.a	ENSGT00940000160835.f.a
River trout	MODERN SPECIES	22	scn1ba (ENSSTUG00000036239)	GRAMD1A (ENSSTUG00000036261)	si:ch211-225p5.8 (ENSSTUG00000036404)	ENSSTUG00000036411	dnajc28 (ENSSTUG00000036416)	pycard (ENSSTUG00000036423)	etsrp (ENSSTUG00000036439)	fli1rs (ENSSTUG00000036447)	ENSSTUG00000036480	ENSSTUG00000036487	dhx16 (ENSSTUG00000036550)	ENSSTUG00000037690	rnf183 (ENSSTUG00000037701)	mgat1a (ENSSTUG00000037706)	sh3bp5la (ENSSTUG00000037711)	GABBR1 (ENSSTUG00000037785) #22	tnfb (ENSSTUG00000040264)	ENSSTUG00000040276	bag6 (ENSSTUG00000028674)	tspan13a (ENSSTUG00000028815)	ankmy2a (ENSSTUG00000028849)	sostdc1a (ENSSTUG00000028918)	crppa (ENSSTUG00000028928)	MEOX2 (ENSSTUG00000028939)	agmo (ENSSTUG00000028951)	DGKB (ENSSTUG00000028995)	etv1 (ENSSTUG00000030554)	arl4aa (ENSSTUG00000030610)	ENSSTUG00000030616	VWDE (ENSSTUG00000030623)	seraf (ENSSTUG00000030657)
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000053824	si:ch211-225p5.8 (ENSSSAG00000053836)	ENSSSAG00000121975	ENSSSAG00000053841	ENSSSAG00000088872	pycard (ENSSSAG00000053852)	etsrp (ENSSSAG00000053870)	fli1rs (ENSSSAG00000053885)	ENSSSAG00000053907	ENSSSAG00000106588	ppt2a.2 (ENSSSAG00000115819)	dhx16 (ENSSSAG00000054037)	rnf183 (ENSSSAG00000106663)	mgat1 (ENSSSAG00000059733)	sh3bp5la (ENSSSAG00000059755)	ENSSSAG00000059972 #22	tnf-alpha-1 (ENSSSAG00000065312)	ENSSSAG00000053776	bag6 (ENSSSAG00000065328)	tspan13a (ENSSSAG00000065356)	ankmy2 (ENSSSAG00000065360)	sostdc1 (ENSSSAG00000065369)	crppa (ENSSSAG00000065371)	meox2 (ENSSSAG00000065379)	agmo (ENSSSAG00000001954)	DGKB (ENSSSAG00000002089)	etv1 (ENSSSAG00000003519)	arl4aa (ENSSSAG00000091136)	ENSSSAG00000003541	seraf (ENSSSAG00000104583)	tmem106b (ENSSSAG00000003611)
Oncorhynchus	ANCESTRAL SPECIES	38	ENSGT00390000018560.a.a.a.a.a.c	ENSGT00940000161007.k.a	ENSGT00390000018560.a.a.b.c.a	ENSGT00940000154497.A.d	ENSGT00940000154065.b.m	ENSGT00940000164898.i.b	ENSGT00940000166384.d	ENSGT00940000165943.c	ENSGT00390000002843.a.f	ENSGT00980000198705.b	ENSGT00940000155779.a.a.g	ENSGT00940000158480.c	ENSGT00940000166999.B.c	ENSGT00530000063632.B.b.d	ENSGT00390000018500.a.d.d	ENSGT00940000157642.g.k #22	ENSGT01060000248544.a.b.b.a.c	ENSGT00990000205959.b	ENSGT00940000169242.b	ENSGT00390000016199.a.c	ENSGT00940000157010.m.a	ENSGT00390000016820.d.f	ENSGT00390000014900.b.a.d	ENSGT00390000006412.g	ENSGT00940000154018.b.b.b	ENSGT00440000033807.d.b.b	ENSGT00940000159770.g.b	ENSGT00940000157123.m	ENSGT00940000154546.a.r	ENSGT00940000163868.b	ENSGT00940000165119.h
Oncorhynchus_a	ANCESTRAL SPECIES	26	ENSGT00390000018560.a.a.a.a.a.d.b.a	ENSGT00940000161007.k.a	ENSGT00390000018560.a.a.b.c.a	ENSGT00940000154497.A.d	ENSGT00940000154065.b.m	ENSGT00940000164898.i.b	ENSGT00940000166384.d	ENSGT00940000165943.c	ENSGT00390000002843.a.f	ENSGT00980000198705.b	ENSGT00940000155779.a.a.g	ENSGT00940000158480.c	ENSGT00940000166999.B.c	ENSGT00530000063632.B.b.d	ENSGT00390000018500.a.d.d	ENSGT00940000157642.g.k #22	ENSGT01060000248544.a.b.b.a.c	ENSGT00990000205959.b	ENSGT00940000169242.b	ENSGT00390000016199.a.c	ENSGT00940000157010.m.a	ENSGT00390000016820.d.f	ENSGT00390000014900.b.a.d	ENSGT00390000006412.g	ENSGT00940000154018.b.b.b	ENSGT00440000033807.d.b.b	ENSGT00940000159770.g.b	ENSGT00940000157123.m	ENSGT00940000154546.a.r	ENSGT00940000163868.b	ENSGT00940000165119.h
Chinook salmon	MODERN SPECIES	22	ENSOTSG00005021170	si:ch211-225p5.8 (ENSOTSG00005021168)	ENSOTSG00005021167	dnajc28 (ENSOTSG00005021165)	pycard (ENSOTSG00005021164)	etsrp (ENSOTSG00005021163)	fli1rs (ENSOTSG00005021162)	ENSOTSG00005021161	ENSOTSG00005021159	ENSOTSG00005021157	ENSOTSG00005021156	dhx16 (ENSOTSG00005018005)	rnf183 (ENSOTSG00005017948)	mgat1a (ENSOTSG00005017944)	sh3bp5la (ENSOTSG00005017942)	GABBR1 (ENSOTSG00005017492) #22	tnfb (ENSOTSG00005017487)	ENSOTSG00005017486	ENSOTSG00005017485	tspan13a (ENSOTSG00005017482)	ankmy2a (ENSOTSG00005017480)	sostdc1a (ENSOTSG00005017476)	crppa (ENSOTSG00005017474)	MEOX2 (ENSOTSG00005017472)	agmo (ENSOTSG00005017467)	DGKB (ENSOTSG00005015545)	etv1 (ENSOTSG00005015533)	arl4aa (ENSOTSG00005015532)	ENSOTSG00005015522	seraf (ENSOTSG00005015519)	tmem106ba (ENSOTSG00005015517)
Coho salmon	MODERN SPECIES	4	ENSOKIG00005017592	si:ch211-225p5.8 (ENSOKIG00005018214)	ENSOKIG00005018224	dnajc28 (ENSOKIG00005018235)	pycard (ENSOKIG00005018241)	etsrp (ENSOKIG00005018260)	fli1rs (ENSOKIG00005018280)	ENSOKIG00005018295	ENSOKIG00005018303	ENSOKIG00005018330	dhx16 (ENSOKIG00005018388)	ENSOKIG00005018876	rnf183 (ENSOKIG00005018884)	mgat1a (ENSOKIG00005018889)	sh3bp5la (ENSOKIG00005018899)	GABBR1 (ENSOKIG00005019029) #22	tnfb (ENSOKIG00005020779)	ENSOKIG00005020795	ENSOKIG00005020808	bag6 (ENSOKIG00005020829)	tspan13a (ENSOKIG00005020876)	ankmy2a (ENSOKIG00005020893)	sostdc1a (ENSOKIG00005020922)	crppa (ENSOKIG00005020938)	MEOX2 (ENSOKIG00005020952)	DGKB (ENSOKIG00005021286)	etv1 (ENSOKIG00005024096)	arl4aa (ENSOKIG00005024222)	ENSOKIG00005024254	seraf (ENSOKIG00005024325)	tmem106ba (ENSOKIG00005024332)
Rainbow trout	MODERN SPECIES	11	scn1ba (ENSOMYG00000029610)	ENSOMYG00000003795	si:ch211-225p5.8 (ENSOMYG00000029560)	ENSOMYG00000029465	ENSOMYG00000029456	pycard (ENSOMYG00000029437)	etsrp (ENSOMYG00000029403)	fli1rs (ENSOMYG00000029299)	ENSOMYG00000021047	ENSOMYG00000029177	ENSOMYG00000029094	dhx16 (ENSOMYG00000029045)	rnf183 (ENSOMYG00000028927)	mgat1a (ENSOMYG00000052751)	sh3bp5la (ENSOMYG00000028912)	ENSOMYG00000026408 #22	ENSOMYG00000053355	tnfb (ENSOMYG00000025945)	ENSOMYG00000013506	ENSOMYG00000013497	bag6 (ENSOMYG00000013461)	tspan13a (ENSOMYG00000013329)	ankmy2a (ENSOMYG00000013299)	sostdc1a (ENSOMYG00000013278)	crppa (ENSOMYG00000013238)	MEOX2 (ENSOMYG00000054622)	agmo (ENSOMYG00000013189)	DGKB (ENSOMYG00000008853)	etv1 (ENSOMYG00000007057)	arl4aa (ENSOMYG00000006875)	ENSOMYG00000006815
Huchen	MODERN SPECIES	578	scn1ba (ENSHHUG00000010981)	ENSHHUG00000011128	si:ch211-225p5.8 (ENSHHUG00000011154)	ENSHHUG00000011162	dnajc28 (ENSHHUG00000011208)	ENSHHUG00000011210	etsrp (ENSHHUG00000011216)	fli1rs (ENSHHUG00000011281)	ENSHHUG00000011320	ENSHHUG00000011328	ENSHHUG00000011349	dhx16 (ENSHHUG00000011368)	rnf183 (ENSHHUG00000011792)	mgat1a (ENSHHUG00000011797)	sh3bp5la (ENSHHUG00000011801)	ENSHHUG00000011821 #22	tnfb (ENSHHUG00000011947)	ENSHHUG00000011998	bag6 (ENSHHUG00000012007)	tspan13a (ENSHHUG00000012033)	ankmy2a (ENSHHUG00000012044)	sostdc1a (ENSHHUG00000012048)	crppa (ENSHHUG00000012057)	MEOX2 (ENSHHUG00000012067)	ENSHHUG00000012071	DGKB (ENSHHUG00000012087)	etv1 (ENSHHUG00000012602)
Salmoninae	ANCESTRAL SPECIES	664						ENSGT00940000165943.d	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705.a	ENSGT00940000155779.a.a.h	ENSGT00940000158480.d	ENSGT00940000166999.B.d	ENSGT00530000063632.B.b.c	ENSGT00390000018500.a.d.c	ENSGT00940000157642.g.l #22	ENSGT01060000248544.a.b.b.a.d	ENSGT00990000205959.a
Salmoninae_a	ANCESTRAL SPECIES	43	ENSGT00940000161007.k.b.b	ENSGT00390000018560.a.a.b.d	ENSGT00940000154497.A.c	ENSGT00940000164898.i.a	ENSGT00940000166384.c	ENSGT00940000165943.d	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a.e	ENSGT00940000169011	ENSGT00980000198705.a	ENSGT00940000155779.a.a.h	ENSGT00940000158480.d	ENSGT00940000166999.B.d	ENSGT00530000063632.B.b.c	ENSGT00390000018500.a.d.c	ENSGT00940000157642.g.l #22	ENSGT01060000248544.a.b.b.a.d	ENSGT00990000205959.a	ENSGT00940000169242	ENSGT00390000016199.a.d	ENSGT00940000157010.m.b	ENSGT00390000016820.d.e	ENSGT00390000014900.b.a.c	ENSGT00390000006412.h	ENSGT00940000154018.b.b.a	ENSGT00440000033807.d.a	ENSGT00940000159770.g.a	ENSGT00940000157123.n	ENSGT00940000154546.a.q	ENSGT00940000163868.a	ENSGT00940000165119.g
Salmo	ANCESTRAL SPECIES	32	ENSGT00940000161007.k.b.b	ENSGT00390000018560.a.a.b.d	ENSGT00940000154497.A.c	ENSGT00940000164898.i.a	ENSGT00940000166384.c	ENSGT00940000165943.d	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a.e	ENSGT00940000169011	ENSGT00980000198705.a	ENSGT00940000155779.a.a.h	ENSGT00940000158480.d	ENSGT00940000166999.B.d	ENSGT00530000063632.B.b.c	ENSGT00390000018500.a.d.c	ENSGT00940000157642.g.l #22	ENSGT01060000248544.a.b.b.a.d	ENSGT00990000205959.a	ENSGT00940000169242	ENSGT00390000016199.a.d	ENSGT00940000157010.m.b	ENSGT00390000016820.d.e	ENSGT00390000014900.b.a.c	ENSGT00390000006412.h	ENSGT00940000154018.b.b.a	ENSGT00440000033807.d.a	ENSGT00940000159770.g.a	ENSGT00940000157123.n	ENSGT00940000154546.a.q	ENSGT00940000163868.a	ENSGT00940000165119.g
River trout	MODERN SPECIES	30	ENSSTUG00000047488	si:ch211-225p5.8 (ENSSTUG00000047482)	ENSSTUG00000047478	pycard (ENSSTUG00000047471)	etsrp (ENSSTUG00000047469)	fli1rs (ENSSTUG00000047453)	zp3d.2 (ENSSTUG00000047439)	ENSSTUG00000047434	ENSSTUG00000047429	ENSSTUG00000047420	ENSSTUG00000047412	dhx16 (ENSSTUG00000047120)	rnf183 (ENSSTUG00000047083)	mgat1a (ENSSTUG00000047078)	sh3bp5la (ENSSTUG00000047070)	ENSSTUG00000046011 #22	tnfb (ENSSTUG00000045951)	ENSSTUG00000045940	ENSSTUG00000045933	bag6 (ENSSTUG00000045791)	tspan13a (ENSSTUG00000045770)	ankmy2a (ENSSTUG00000045762)	sostdc1a (ENSSTUG00000045760)	crppa (ENSSTUG00000045752)	MEOX2 (ENSSTUG00000045747)	agmo (ENSSTUG00000045444)	ENSSTUG00000045424	DGKB (ENSSTUG00000044920)	etv1 (ENSSTUG00000044839)	arl4aa (ENSSTUG00000044829)	ENSSTUG00000044706
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000068017	ENSSSAG00000068005	psmc4 (ENSSSAG00000067990)	scn1ba (ENSSSAG00000087043)	ENSSSAG00000067956	si:ch211-225p5.8 (ENSSSAG00000067949)	ENSSSAG00000067943	ENSSSAG00000062219	ENSSSAG00000096350	ENSSSAG00000067924	ENSSSAG00000067914	ENSSSAG00000067899	dhx16 (ENSSSAG00000058938)	mgat1a (ENSSSAG00000110922)	sh3bp5la (ENSSSAG00000058529)	ENSSSAG00000053851 #22	tnf-alpha-2 (ENSSSAG00000053783)	ENSSSAG00000102660	bag6 (ENSSSAG00000053464)	tspan13a (ENSSSAG00000053417)	ankmy2a (ENSSSAG00000053389)	sostdc1a (ENSSSAG00000053373)	crppa (ENSSSAG00000053326)	MEOX2 (ENSSSAG00000109362)	agmo (ENSSSAG00000053190)	DGKB (ENSSSAG00000044213)	etv1 (ENSSSAG00000043715)	arl4aa (ENSSSAG00000088318)	ENSSSAG00000043569	seraf (ENSSSAG00000100466)	tmem106ba (ENSSSAG00000043547)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00390000018560.a.a.b.c.b	ENSGT00940000154497.A.c	ENSGT00940000154065.b.n	ENSGT00940000164898.i.a	ENSGT00940000166384.c	ENSGT00940000165943.d	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a.e	ENSGT00940000169011	ENSGT00980000198705.a	ENSGT00940000155779.a.a.h	ENSGT00940000158480.d	ENSGT00940000166999.B.d	ENSGT00530000063632.B.b.c	ENSGT00390000018500.a.d.c	ENSGT00940000157642.g.l #22	ENSGT01060000248544.a.b.b.a.d	ENSGT00990000205959.a	ENSGT00940000169242.a	ENSGT00390000016199.a.d	ENSGT00940000157010.m.b	ENSGT00390000016820.d.e	ENSGT00390000014900.b.a.c	ENSGT00390000006412.h	ENSGT00940000154018.b.b.a	ENSGT00440000033807.d.a	ENSGT00940000159770.g.a	ENSGT00940000157123.n	ENSGT00940000154546.a.q	ENSGT00940000163868.a	ENSGT00940000165119.g
Rainbow trout	MODERN SPECIES	21	psmc4 (ENSOMYG00000003914)	scn1ba (ENSOMYG00000003827)	ENSOMYG00000021103	ENSOMYG00000021095	pycard (ENSOMYG00000021087)	etsrp (ENSOMYG00000021079)	fli1rs (ENSOMYG00000021067)	zp3d.2 (ENSOMYG00000060464)	ENSOMYG00000021039	ENSOMYG00000054364	ENSOMYG00000021019	dhx16 (ENSOMYG00000020973)	rnf183 (ENSOMYG00000020946)	mgat1a (ENSOMYG00000020943)	sh3bp5la (ENSOMYG00000020937)	ENSOMYG00000019132 #22	tnf (ENSOMYG00000018888)	ENSOMYG00000018872	ENSOMYG00000018859	bag6 (ENSOMYG00000018793)	tspan13a (ENSOMYG00000018754)	ankmy2a (ENSOMYG00000018736)	sostdc1a (ENSOMYG00000018726)	crppa (ENSOMYG00000018684)	MEOX2 (ENSOMYG00000018673)	agmo (ENSOMYG00000018558)	DGKB (ENSOMYG00000012135)	etv1 (ENSOMYG00000011641)	arl4aa (ENSOMYG00000011613)	ENSOMYG00000011539	seraf (ENSOMYG00000011503)
Oncorhynchus_a	ANCESTRAL SPECIES	39	ENSGT00390000018560.a.a.b.c.b	ENSGT00940000154497.A.c	ENSGT00940000154065.b.n	ENSGT00940000164898.i.a	ENSGT00940000166384.c	ENSGT00940000165943.d	ENSGT01030000234567.A.a.a.a.a.b.e.b	ENSGT00390000002843.a.e	ENSGT00940000169011	ENSGT00980000198705.a	ENSGT00940000155779.a.a.h	ENSGT00940000158480.d	ENSGT00940000166999.B.d	ENSGT00530000063632.B.b.c	ENSGT00390000018500.a.d.c	ENSGT00940000157642.g.l #22	ENSGT01060000248544.a.b.b.a.d	ENSGT00990000205959.a	ENSGT00940000169242.a	ENSGT00390000016199.a.d	ENSGT00940000157010.m.b	ENSGT00390000016820.d.e	ENSGT00390000014900.b.a.c	ENSGT00390000006412.h	ENSGT00940000154018.b.b.a	ENSGT00440000033807.d.a	ENSGT00940000159770.g.a	ENSGT00940000157123.n	ENSGT00940000154546.a.q	ENSGT00940000163868.a	ENSGT00940000165119.g
Coho salmon	MODERN SPECIES	11	si:ch211-225p5.8 (ENSOKIG00005038669)	ENSOKIG00005038656	DNAJC28 (ENSOKIG00005038609)	pycard (ENSOKIG00005038582)	etsrp (ENSOKIG00005038570)	fli1rs (ENSOKIG00005038504)	zp3d.2 (ENSOKIG00005038489)	ENSOKIG00005038470	ENSOKIG00005038461	ENSOKIG00005038448	ENSOKIG00005038408	dhx16 (ENSOKIG00005038139)	rnf183 (ENSOKIG00005038096)	mgat1a (ENSOKIG00005038083)	sh3bp5la (ENSOKIG00005038073)	GABBR1 (ENSOKIG00005035825) #22	tnfb (ENSOKIG00005035653)	ENSOKIG00005035628	ENSOKIG00005035601	bag6 (ENSOKIG00005035560)	tspan13a (ENSOKIG00005035541)	ankmy2a (ENSOKIG00005035042)	sostdc1a (ENSOKIG00005035012)	crppa (ENSOKIG00005034961)	MEOX2 (ENSOKIG00005034953)	agmo (ENSOKIG00005034914)	DGKB (ENSOKIG00005031891)	etv1 (ENSOKIG00005031673)	arl4aa (ENSOKIG00005031665)	ENSOKIG00005031632	seraf (ENSOKIG00005031627)
Chinook salmon	MODERN SPECIES	22	ENSOTSG00005005785	scn1ba (ENSOTSG00005005763)	ENSOTSG00005005760	ENSOTSG00005005757	pycard (ENSOTSG00005005755)	etsrp (ENSOTSG00005005752)	fli1rs (ENSOTSG00005005750)	zp3d.2 (ENSOTSG00005005749)	ENSOTSG00005005746	ENSOTSG00005005745	ENSOTSG00005005744	dhx16 (ENSOTSG00005005703)	rnf183 (ENSOTSG00005005690)	mgat1a (ENSOTSG00005005688)	sh3bp5la (ENSOTSG00005005685)	ENSOTSG00005000530 #22	tnfb (ENSOTSG00005000469)	ENSOTSG00005000467	ENSOTSG00005000466	bag6 (ENSOTSG00005000463)	tspan13a (ENSOTSG00005000458)	ankmy2a (ENSOTSG00005000436)	sostdc1a (ENSOTSG00005000430)	MEOX2 (ENSOTSG00005000429)	agmo (ENSOTSG00005000286)	DGKB (ENSOTSG00005000283)	ENSOTSG00005000282	ENSOTSG00005000281	ENSOTSG00005000279	ckbb (ENSOTSG00005000276)	mark3b (ENSOTSG00005000274)
Huchen	MODERN SPECIES	4400													ENSHHUG00000042420	mgat1a (ENSHHUG00000042414)	sh3bp5la (ENSHHUG00000042408)	GABBR1 (ENSHHUG00000042271) #22	tnfb (ENSHHUG00000042251)	ENSHHUG00000042247
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	19	si:ch211-225p5.8 (ENSELUG00000015959)	ENSELUG00000031709	dnajc28 (ENSELUG00000015943)	pycard (ENSELUG00000015935)	etsrp (ENSELUG00000015918)	fli1rs (ENSELUG00000015882)	zp3d.2 (ENSELUG00000015815)	ENSELUG00000015807	ENSELUG00000015794	ENSELUG00000015777	ppt2a.1 (ENSELUG00000015747)	dhx16 (ENSELUG00000015727)	rnf183 (ENSELUG00000015672)	mgat1a (ENSELUG00000015658)	sh3bp5la (ENSELUG00000015642)	GABBR1 (ENSELUG00000000582) #22	tnfb (ENSELUG00000015560)	ENSELUG00000015551	bag6 (ENSELUG00000015518)	tspan13 (ENSELUG00000015322)	ankmy2a (ENSELUG00000015275)	ENSELUG00000015214	sostdc1a (ENSELUG00000015189)	crppa (ENSELUG00000015176)	MEOX2 (ENSELUG00000015107)	agmo (ENSELUG00000015085)	DGKB (ENSELUG00000014999)	etv1 (ENSELUG00000014912)	ENSELUG00000034193	arl4aa (ENSELUG00000034640)	ENSELUG00000014821
Northern pike	MODERN SPECIES	225																GABBR1 (ENSELUG00000028906) #22
Osteoglossocephalai	ANCESTRAL SPECIES	37	ENSGT00940000158360	ENSGT00940000165119	ENSGT00940000160835	ENSGT00940000166910	ENSGT00940000159083	ENSGT00940000154546.b	ENSGT00940000154018.b.a	ENSGT00390000014900.a	ENSGT00390000016820.c	ENSGT00390000012561.a	ENSGT00940000157010.n	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000159263	ENSGT00390000010554	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00390000008658	ENSGT00390000016199.b	ENSGT00940000154416.C.c.b	ENSGT00940000158329	ENSGT00390000014159	ENSGT00390000008126 #17	ENSGT00940000160110	ENSGT00530000063632.B.a	ENSGT00940000159890	ENSGT00390000001153 #16	ENSGT00970000193610
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	9	ENSGT00390000002843.b	ENSGT00940000160769	ENSGT00390000010806	ENSGT00940000155779.a.b	ENSGT01060000248556.A.a.a.b	ENSGT00940000170244	ENSGT00390000008146	ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h.a #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263.a	ENSGT00530000063273.b.a.b.a.b.n	ENSGT00940000157010.n.k	ENSGT00390000012561.a	ENSGT00390000014900.a	ENSGT00940000154018.b.a	ENSGT00940000154546.b	ENSGT00940000159083
Asian bonytongue	MODERN SPECIES	15	ENSSFOG00015028945	ddah2 (ENSSFOG00015016687)	rps5 (ENSSFOG00015027542)	ppt2b (ENSSFOG00015016412)	cratb (ENSSFOG00015016342)	ENSSFOG00015027042	nrm (ENSSFOG00015030283)	ENSSFOG00015016234	ppp1r11 (ENSSFOG00015025626) #16	vars2 (ENSSFOG00015016187)	mgat1b (ENSSFOG00015016165)	ddx39b (ENSSFOG00015016107)	polr1h (ENSSFOG00015016079) #17	gtf2h4 (ENSSFOG00015016041)	SH3BP5L (ENSSFOG00015026023)	GABBR1 (ENSSFOG00015015917) #22	tnfa (ENSSFOG00015015875)	atat1 (ENSSFOG00015015855)	ENSSFOG00015028274	bag6l (ENSSFOG00015015766)	si:ch211-215a10.4 (ENSSFOG00015015745)	abcf1 (ENSSFOG00015015711)	mrps18b (ENSSFOG00015015664)	ppp1r10 (ENSSFOG00015015630)	agr2 (ENSSFOG00015015479)	tspan13b (ENSSFOG00015015456)	bzw2 (ENSSFOG00015015434)	sostdc1b (ENSSFOG00015026751)	meox2b (ENSSFOG00015020394)	arl4ab (ENSSFOG00015028264)	scin (ENSSFOG00015015351)
P. kingsleyae	MODERN SPECIES	95	ENSPKIG00000011689	ddah2 (ENSPKIG00000011667)	rps5 (ENSPKIG00000011575)	ppt2b (ENSPKIG00000011551)	cratb (ENSPKIG00000011512)	ENSPKIG00000011475	nrm (ENSPKIG00000011453)	ENSPKIG00000011425	ppp1r11 (ENSPKIG00000011408) #16	vars2 (ENSPKIG00000011372)	mgat1b (ENSPKIG00000011357)	ddx39b (ENSPKIG00000011324)	polr1h (ENSPKIG00000011313) #17	gtf2h4 (ENSPKIG00000011270)	SH3BP5L (ENSPKIG00000011245)	GABBR1 (ENSPKIG00000011169) #22	tnfa (ENSPKIG00000011137)	atat1 (ENSPKIG00000011099)	ENSPKIG00000011071	bag6l (ENSPKIG00000011040)	si:ch211-215a10.4 (ENSPKIG00000011022)	mrps18b (ENSPKIG00000011007)	abcf1 (ENSPKIG00000010965)	ppp1r10 (ENSPKIG00000010930)	agr2 (ENSPKIG00000010902)	tspan13b (ENSPKIG00000010874)	bzw2 (ENSPKIG00000010815)	sostdc1b (ENSPKIG00000010778)	meox2b (ENSPKIG00000010760)	ENSPKIG00000010754	arl4ab (ENSPKIG00000010744)
Osteoglossiformes	ANCESTRAL SPECIES	8	ENSGT00940000155565.a	ENSGT00940000158338	ENSGT00940000158537	ENSGT00390000011559.j	ENSGT00390000013846.a.b	ENSGT00390000003781.e.a	ENSGT00510000049347.g	ENSGT00550000074977	ENSGT00390000002843.a	ENSGT00940000169011	ENSGT00980000198705	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00390000018500.a.d	ENSGT00940000157642.h.b #22	ENSGT01060000248544.a.b.b.a	ENSGT00990000205959	ENSGT00940000169242	ENSGT00390000001026	ENSGT00390000016199.a	ENSGT00980000199373	ENSGT00940000159263.b	ENSGT00530000063273.b.a.b.a.b.m	ENSGT00940000157010.n.l	ENSGT00940000157010.m	ENSGT00390000016820.c	ENSGT00940000165642	ENSGT00390000014900.b.a	ENSGT01100000266855	ENSGT00390000006412
Asian bonytongue	MODERN SPECIES	9	ENSSFOG00015019589	ENSSFOG00015019610	ENSSFOG00015019626	AIF1 (ENSSFOG00015019631)	csnk2b (ENSSFOG00015019649)	ENSSFOG00015019657	ENSSFOG00015019682	ENSSFOG00015019766	ENSSFOG00015019773	ENSSFOG00015019786	ENSSFOG00015019802	ppt2a.2 (ENSSFOG00015019830)	dhx16 (ENSSFOG00015019853)	rnf183 (ENSSFOG00015028923)	sh3bp5la (ENSSFOG00015024245)	GABBR1 (ENSSFOG00015019934) #22	tnfb (ENSSFOG00015020023)	ENSSFOG00015024630	ENSSFOG00015031711	bag6 (ENSSFOG00015020052)	ENSSFOG00015020078	ENSSFOG00015005784	ppp1r10 (ENSSFOG00015020118)	AGR2 (ENSSFOG00015020287)	tspan13a (ENSSFOG00015020307)	ANKMY2 (ENSSFOG00015020325)	ENSSFOG00015029279	sostdc1a (ENSSFOG00015030293)	ENSSFOG00015025443	crppa (ENSSFOG00015020378)	MEOX2 (ENSSFOG00015027424)
P. kingsleyae	MODERN SPECIES	69	ENSPKIG00000013118	ENSPKIG00000013110	ENSPKIG00000013083	AIF1 (ENSPKIG00000012988)	csnk2b (ENSPKIG00000012963)	ENSPKIG00000012943	MSH5 (ENSPKIG00000012880)	ENSPKIG00000012846	ENSPKIG00000012826	ENSPKIG00000012800	ppt2a.1 (ENSPKIG00000012763)	dhx16 (ENSPKIG00000012693)	rnf183 (ENSPKIG00000012672)	sh3bp5la (ENSPKIG00000012651)	tnfb (ENSPKIG00000012620)	GABBR1 (ENSPKIG00000012447) #22	ENSPKIG00000012346	ENSPKIG00000012337	bag6 (ENSPKIG00000012254)	ppp1r10 (ENSPKIG00000012161)	AGR2 (ENSPKIG00000012091)	tspan13b (ENSPKIG00000012041)	ANKMY2 (ENSPKIG00000012001)	ENSPKIG00000011958	sostdc1a (ENSPKIG00000011930)	crppa (ENSPKIG00000011906)	MEOX2 (ENSPKIG00000011890)	agmo (ENSPKIG00000011859)	DGKB (ENSPKIG00000011754)	etv1 (ENSPKIG00000011677)	arl4aa (ENSPKIG00000011618)
Clupeocephala	ANCESTRAL SPECIES	19							ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00940000158329	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00940000154018.b.a	ENSGT00940000154546.b	ENSGT00940000159083
Euteleosteomorpha	ANCESTRAL SPECIES	12	ENSGT00940000156213.q.b	ENSGT00940000157833.h.a	ENSGT00940000155019.a.a	ENSGT01000000214440.A.a.b.a.g.b.a	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00940000158329	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00940000154018.b.a	ENSGT00940000154546.b	ENSGT00940000159083
Acanthomorphata	ANCESTRAL SPECIES	61	ENSGT00940000157047.n	ENSGT00940000157833.h.a	ENSGT00940000155019.a.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00930000152259	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00960000191228	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00940000154018.b.a
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000157833.h.a	ENSGT00940000155019.a.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000177559	ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00930000152259	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00960000191228	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00940000154018.b.a
Pinecone sodierfish	MODERN SPECIES	2	LDLRAD4 (ENSMMDG00005007054)	pex11b (ENSMMDG00005007050)	smad10a (ENSMMDG00005007043)	snapin (ENSMMDG00005007039)	chtopa (ENSMMDG00005007036)	sacm1la (ENSMMDG00005006470)	ENSMMDG00005006460	ppp1r11 (ENSMMDG00005006459) #16	vars2 (ENSMMDG00005006252)	mgat1b (ENSMMDG00005006212)	ddx39b (ENSMMDG00005005438)	polr1h (ENSMMDG00005005423) #17	sass6 (ENSMMDG00005005419)	gtf2h4 (ENSMMDG00005005376)	SH3BP5L (ENSMMDG00005005360)	ENSMMDG00005005068 #22	ENSMMDG00005005040	atat1 (ENSMMDG00005005028)	ENSMMDG00005005017	ENSMMDG00005005010	bag6l (ENSMMDG00005004930)	si:ch211-215a10.4 (ENSMMDG00005004910)	abcf1 (ENSMMDG00005004894)	mrps18b (ENSMMDG00005004867)	ppp1r10 (ENSMMDG00005019643)	agr2 (ENSMMDG00005019640)	tspan13b (ENSMMDG00005019639)	bzw2 (ENSMMDG00005019556)	ANKMY2 (ENSMMDG00005019541)	sostdc1b (ENSMMDG00005019538)	meox2b (ENSMMDG00005019531)
Percomorphaceae	ANCESTRAL SPECIES	86						ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000177559	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00960000191228	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c
Tiger tail seahorse	MODERN SPECIES	393											vars2 (ENSHCOG00000017907)	mgat1b (ENSHCOG00000017934)	polr1h (ENSHCOG00000017958) #17	gtf2h4 (ENSHCOG00000018003)	SH3BP5L (ENSHCOG00000018034)	GABBR1 (ENSHCOG00000018084) #22	tnfa (ENSHCOG00000000590)	ENSHCOG00000018134	ENSHCOG00000018165	rnf139 (ENSHCOG00000018198)	ENSHCOG00000018232	epn1b (ENSHCOG00000018240)	si:ch211-232m10.6 (ENSHCOG00000018277)	rcvrn3 (ENSHCOG00000018295)	tmem238a (ENSHCOG00000018302)	ccdc106b (ENSHCOG00000018312)	eno2 (ENSHCOG00000018346)	cdc42l (ENSHCOG00000018382)	ENSHCOG00000018462	ENSHCOG00000018479	slc2a3a (ENSHCOG00000018506)
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00940000157047.n	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000177559	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
Percomorphaceae_C	ANCESTRAL SPECIES	15		ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
Eupercaria	ANCESTRAL SPECIES	11		ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
Eupecaria_A	ANCESTRAL SPECIES	12		ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
Ballan wrasse	MODERN SPECIES	263		ENSLBEG00000011441	ENSLBEG00000011616	ENSLBEG00000011635	ENSLBEG00000011664	trnau1apa (ENSLBEG00000011683)	sacm1la (ENSLBEG00000011734)	ENSLBEG00000011862	ppp1r11 (ENSLBEG00000011879) #16	vars2 (ENSLBEG00000011949)	mgat1b (ENSLBEG00000012202)	ddx39b (ENSLBEG00000012254)	polr1h (ENSLBEG00000012306) #17	gtf2h4 (ENSLBEG00000012332)	SH3BP5L (ENSLBEG00000012399)	GABBR1 (ENSLBEG00000012472) #22	tnfa (ENSLBEG00000012547)	atat1 (ENSLBEG00000012566)	ENSLBEG00000012599	bag6l (ENSLBEG00000012653)	si:ch211-215a10.4 (ENSLBEG00000012838)	abcf1 (ENSLBEG00000012884)	mrps18b (ENSLBEG00000012943)	ppp1r10 (ENSLBEG00000013028)	agr2 (ENSLBEG00000013339)	tspan13b (ENSLBEG00000013703)	ANKMY2 (ENSLBEG00000013743)	sostdc1b (ENSLBEG00000013837)	ssr2 (ENSLBEG00000013863)	ENSLBEG00000013889	e2f3 (ENSLBEG00000013909)
Eupecaria_B	ANCESTRAL SPECIES	12		ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
Eupecaria_C	ANCESTRAL SPECIES	13			ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10			ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
European seabass	MODERN SPECIES	10	ENSDLAG00005032192	ENSDLAG00005027653	ENSDLAG00005034117	ENSDLAG00005034670	ENSDLAG00005030430	ENSDLAG00005026726	ENSDLAG00005021153	ENSDLAG00005020833	vars2 (ENSDLAG00005020741)	ppp1r11 (ENSDLAG00005033120) #16	ENSDLAG00005033996	ENSDLAG00005028450	gtf2h4 (ENSDLAG00005020680)	polr1h (ENSDLAG00005020731) #17	ENSDLAG00005034950	ENSDLAG00005003439 #22	tnfa (ENSDLAG00005030237)	ENSDLAG00005004019	ENSDLAG00005004003	bag6l (ENSDLAG00005028033)	si:ch211-215a10.4 (ENSDLAG00005028802)	abcf1 (ENSDLAG00005026650)	mrps18b (ENSDLAG00005030703)	ppp1r10 (ENSDLAG00005024426)	agr2 (ENSDLAG00005024435)	tspan13b (ENSDLAG00005024442)	BZW2 (ENSDLAG00005024454)	ANKMY2 (ENSDLAG00005024485)	ENSDLAG00005028944	ENSDLAG00005024492	ENSDLAG00005024502
Large yellow croaker	MODERN SPECIES	484	nfatc1 (ENSLCRG00005004709)	ENSLCRG00005004701	slc52a2 (ENSLCRG00005004699)	ENSLCRG00005004696	ENSLCRG00005004687	ENSLCRG00005004673	sacm1la (ENSLCRG00005004533)	ENSLCRG00005004512	ppp1r11 (ENSLCRG00005004498) #16	vars2 (ENSLCRG00005003951)	mgat1b (ENSLCRG00005003898)	ddx39b (ENSLCRG00005003807)	polr1h (ENSLCRG00005003756) #17	gtf2h4 (ENSLCRG00005003717)	SH3BP5L (ENSLCRG00005003704)	GABBR1 (ENSLCRG00005003185) #22	ENSLCRG00005003008	tnfa (ENSLCRG00005002987)	atat1 (ENSLCRG00005002928)	ENSLCRG00005002901	bag6l (ENSLCRG00005002858)	si:ch211-215a10.4 (ENSLCRG00005002827)	abcf1 (ENSLCRG00005014965)	mrps18b (ENSLCRG00005014958)	ppp1r10 (ENSLCRG00005014930)	agr2 (ENSLCRG00005014924)	tspan13b (ENSLCRG00005014921)	bzw2 (ENSLCRG00005014709)	ANKMY2 (ENSLCRG00005014703)	sostdc1b (ENSLCRG00005014702)	ssr2 (ENSLCRG00005014701)
Gilthead seabream	MODERN SPECIES	17	anln (ENSSAUG00010014772)	MATCAP2 (ENSSAUG00010014745)	STX12 (ENSSAUG00010014698)	ENSSAUG00010011256	ENSSAUG00010011237	trnau1apa (ENSSAUG00010011235)	sacm1la (ENSSAUG00010011190)	ENSSAUG00010011171	ppp1r11 (ENSSAUG00010011169) #16	vars2 (ENSSAUG00010010133)	mgat1b (ENSSAUG00010010116)	polr1h (ENSSAUG00010010114) #17	gtf2h4 (ENSSAUG00010010098)	SH3BP5L (ENSSAUG00010010092)	ENSSAUG00010010089	GABBR1 (ENSSAUG00010006793) #22	tnfa (ENSSAUG00010006750)	atat1 (ENSSAUG00010006747)	ENSSAUG00010006746	bag6l (ENSSAUG00010006742)	abitram (ENSSAUG00010006738)	ctnnal1 (ENSSAUG00010006709)	elp2 (ENSSAUG00010006697)	gabbr2 (ENSSAUG00010006621)	GALNT12 (ENSSAUG00010006578)	poc1bl (ENSSAUG00010006414)	si:dkey-184p18.2 (ENSSAUG00010006408)	rp9 (ENSSAUG00010006407)	elmo1 (ENSSAUG00010005665)	pex1 (ENSSAUG00010005631)	rbm48 (ENSSAUG00010005614)
Perciformes	ANCESTRAL SPECIES	11	ENSGT00390000010554	ENSGT00940000158329	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658
Cottioidei	ANCESTRAL SPECIES																	ENSGT00940000157642.h #22
Stickleback	MODERN SPECIES	24																ENSGACG00000000455 #22	ENSGACG00000000476	tnfa (ENSGACG00000000478)	atat1 (ENSGACG00000000481)	ENSGACG00000000488	ENSGACG00000000489	bag6l (ENSGACG00000000492)	si:ch211-215a10.4 (ENSGACG00000000495)	arl4ab (ENSGACG00000000497)	tmem106bb (ENSGACG00000000499)	gnrhr1 (ENSGACG00000000507)	gatad2b (ENSGACG00000000510)	txnipa (ENSGACG00000000514)	chtopa (ENSGACG00000000529)	snapin (ENSGACG00000000532)	smad10a (ENSGACG00000000538)
Perciformes_a	ANCESTRAL SPECIES	49	ENSGT00390000010554	ENSGT00940000158329	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000154018.b.a	ENSGT00940000154546.b
Channel bull blenny	MODERN SPECIES	2	mrps18b (ENSCGOG00000009525)	abcf1 (ENSCGOG00000009560)	STX12 (ENSCGOG00000010487)	ccn2b (ENSCGOG00000010603)	EPB41 (ENSCGOG00000010677)	ENSCGOG00000012480	trnau1apa (ENSCGOG00000012483)	sacm1la (ENSCGOG00000012524)	ENSCGOG00000013366	ppp1r11 (ENSCGOG00000013368) #16	vars2 (ENSCGOG00000013408)	mgat1b (ENSCGOG00000015566)	polr1h (ENSCGOG00000015570) #17	gtf2h4 (ENSCGOG00000015592)	SH3BP5L (ENSCGOG00000015784)	GABBR1 (ENSCGOG00000015810) #22	tnfa (ENSCGOG00000016449)	atat1 (ENSCGOG00000016450)	ENSCGOG00000016454	bag6l (ENSCGOG00000016460)	si:ch211-215a10.4 (ENSCGOG00000016561)	meox2b (ENSCGOG00000016563)	arl4ab (ENSCGOG00000016564)	ENSCGOG00000016568	sema6d (ENSCGOG00000016573)	ENSCGOG00000016637	ENSCGOG00000016640	gatad2b (ENSCGOG00000016642)	txnipa (ENSCGOG00000016650)	chtopa (ENSCGOG00000016682)	snapin (ENSCGOG00000016687)
Pike perch	MODERN SPECIES	5	mrps18b (ENSSLUG00000000592)	abcf1 (ENSSLUG00000000584)	STX12 (ENSSLUG00000000575)	ccn2b (ENSSLUG00000000572)	ENSSLUG00000000462	ENSSLUG00000000429	trnau1apa (ENSSLUG00000000426)	sacm1la (ENSSLUG00000000321)	ENSSLUG00000000247	ppp1r11 (ENSSLUG00000000245) #16	vars2 (ENSSLUG00000000161)	mgat1b (ENSSLUG00000000091)	polr1h (ENSSLUG00000011491) #17	gtf2h4 (ENSSLUG00000011425)	ENSSLUG00000011405	GABBR1 (ENSSLUG00000011120) #22	ENSSLUG00000011096	ENSSLUG00000011088	ENSSLUG00000011083	ENSSLUG00000011080	ENSSLUG00000011078	lrrc3b (ENSSLUG00000011077)	ENSSLUG00000011074	OXSM (ENSSLUG00000011071)	ngly1 (ENSSLUG00000011067)	top2b (ENSSLUG00000003499)	RARB (ENSSLUG00000002791)	ENSSLUG00000002787	thrb (ENSSLUG00000002594)	ENSSLUG00000002557	nr1d2b (ENSSLUG00000002539)
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00390000004417.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
Carangaria	ANCESTRAL SPECIES	14	ENSGT00390000004417.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
Pleuronectoidei	ANCESTRAL SPECIES	15	ENSGT00390000000724.c.b.d	ENSGT00940000158341.a	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000164926	ENSGT00390000005125	ENSGT00390000014900.a	ENSGT00390000016820.c	ENSGT00940000157010.n	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000159263	ENSGT00390000010554	ENSGT00940000158329	ENSGT00390000008658	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	9	ENSCSEG00000018543	ENSCSEG00000018547	ARHGEF2 (ENSCSEG00000018555)	ENSCSEG00000018569	ENSCSEG00000018591	ssr2 (ENSCSEG00000018614)	ENSCSEG00000018630	ANKMY2 (ENSCSEG00000018633)	tspan13b (ENSCSEG00000018642)	agr2 (ENSCSEG00000018664)	ppp1r10 (ENSCSEG00000018699)	mrps18b (ENSCSEG00000018717)	abcf1 (ENSCSEG00000018727)	gtf2h4 (ENSCSEG00000018752)	SH3BP5L (ENSCSEG00000018770)	GABBR1 (ENSCSEG00000018776) #22	ENSCSEG00000018786 #22	tnfa (ENSCSEG00000018791)	ENSCSEG00000018801	ENSCSEG00000018805	polr1h (ENSCSEG00000006330) #17	zgc:110239 (ENSCSEG00000006333)	ENSCSEG00000006342	ENSCSEG00000006363	ENSCSEG00000006374	glcci1a (ENSCSEG00000006379)	ENSCSEG00000006393	ENSCSEG00000006408	c1galt1a (ENSCSEG00000006466)	ENSCSEG00000006473	tac1 (ENSCSEG00000006479)
Tongue sole	MODERN SPECIES	9	ENSCSEG00000018547	ARHGEF2 (ENSCSEG00000018555)	ENSCSEG00000018569	ENSCSEG00000018591	ssr2 (ENSCSEG00000018614)	ENSCSEG00000018630	ANKMY2 (ENSCSEG00000018633)	tspan13b (ENSCSEG00000018642)	agr2 (ENSCSEG00000018664)	ppp1r10 (ENSCSEG00000018699)	mrps18b (ENSCSEG00000018717)	abcf1 (ENSCSEG00000018727)	gtf2h4 (ENSCSEG00000018752)	SH3BP5L (ENSCSEG00000018770)	GABBR1 (ENSCSEG00000018776) #22	ENSCSEG00000018786 #22	tnfa (ENSCSEG00000018791)	ENSCSEG00000018801	ENSCSEG00000018805	polr1h (ENSCSEG00000006330) #17	zgc:110239 (ENSCSEG00000006333)	ENSCSEG00000006342	ENSCSEG00000006363	ENSCSEG00000006374	glcci1a (ENSCSEG00000006379)	ENSCSEG00000006393	ENSCSEG00000006408	c1galt1a (ENSCSEG00000006466)	ENSCSEG00000006473	tac1 (ENSCSEG00000006479)	asns (ENSCSEG00000006492)
Carangaria_A	ANCESTRAL SPECIES	30	ENSGT00390000004417.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000012561.a	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
Barramundi perch	MODERN SPECIES	294			ENSLCAG00010010450	ENSLCAG00010010433	ENSLCAG00010010430	trnau1apa (ENSLCAG00010010427)	SACM1L (ENSLCAG00010010404)	ENSLCAG00010010374	ppp1r11 (ENSLCAG00010010372) #16	vars2 (ENSLCAG00010009809)	mgat1b (ENSLCAG00010009659)	ddx39b (ENSLCAG00010009591)	polr1h (ENSLCAG00010009566) #17	gtf2h4 (ENSLCAG00010009512)	SH3BP5L (ENSLCAG00010009499)	GABBR1 (ENSLCAG00010008757) #22	tnfa (ENSLCAG00010008594)	atat1 (ENSLCAG00010008588)	ENSLCAG00010008584	ENSLCAG00010008582	bag6l (ENSLCAG00010008576)	si:ch211-215a10.4 (ENSLCAG00010008568)	abcf1 (ENSLCAG00010008426)	mrps18b (ENSLCAG00010008357)	ppp1r10 (ENSLCAG00010008348)	agr2 (ENSLCAG00010008336)	tspan13b (ENSLCAG00010008329)	bzw2 (ENSLCAG00010008300)	ANKMY2 (ENSLCAG00010008270)	sostdc1b (ENSLCAG00010008249)	ssr2 (ENSLCAG00010008216)
Seriola	ANCESTRAL SPECIES	55	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00930000152259	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT01070000253760.b.a.a.a.b.d.i.a.a.b	ENSGT00940000166022.c	ENSGT00940000162855.a.a.a.b	ENSGT00940000177098	ENSGT00940000162855.a.b	ENSGT00390000009358	ENSGT00400000024940	ENSGT00390000003774.b	ENSGT00390000003774.a.a.c	ENSGT00940000157616.j.a
Greater amberjack	MODERN SPECIES	32	ENSSDUG00000011765	ENSSDUG00000011747	trnau1apa (ENSSDUG00000011734)	SACM1L (ENSSDUG00000011680)	ENSSDUG00000011635	ppp1r11 (ENSSDUG00000011631) #16	vars2 (ENSSDUG00000011598)	mgat1b (ENSSDUG00000011584)	ddx39b (ENSSDUG00000011557)	polr1h (ENSSDUG00000011547) #17	ENSSDUG00000011513	ENSSDUG00000011484	gtf2h4 (ENSSDUG00000011367)	SH3BP5L (ENSSDUG00000011347)	ENSSDUG00000011329	GABBR1 (ENSSDUG00000011267) #22	tnfa (ENSSDUG00000011254)	atat1 (ENSSDUG00000011205)	ENSSDUG00000011190	bag6l (ENSSDUG00000011135)	si:ch211-215a10.4 (ENSSDUG00000011108)	ENSSDUG00000011078	ENSSDUG00000011066	ENSSDUG00000011052	pleca (ENSSDUG00000010982)	ENSSDUG00000010964	ENSSDUG00000010953	ENSSDUG00000010895	ENSSDUG00000010885	slc52a2 (ENSSDUG00000010873)	ENSSDUG00000010847
Yellowtail amberjack	MODERN SPECIES	3241				polr1b (ENSSLDG00000015398)	ppp1r11 (ENSSLDG00000015430) #16	vars2 (ENSSLDG00000015492)	mgat1b (ENSSLDG00000015737)	ddx39b (ENSSLDG00000015763)	polr1h (ENSSLDG00000015795) #17	ENSSLDG00000015824	ENSSLDG00000015862	gtf2h4 (ENSSLDG00000015880)	ENSSLDG00000015909	SH3BP5L (ENSSLDG00000015926)	ENSSLDG00000015941	ENSSLDG00000015967 #22	tnfa (ENSSLDG00000016010)	atat1 (ENSSLDG00000016042)	ENSSLDG00000016082	bag6l (ENSSLDG00000016112)	si:ch211-215a10.4 (ENSSLDG00000016178)	ENSSLDG00000016205	ENSSLDG00000016235	ENSSLDG00000016257	pleca (ENSSLDG00000016297)	ENSSLDG00000016372	ENSSLDG00000016384	ENSSLDG00000016411	ENSSLDG00000016462	slc52a2 (ENSSLDG00000016480)	ENSSLDG00000016492
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00390000004417.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT01030000234542.b.a.a.a.a
Zig-zag eel	MODERN SPECIES	2	ENSMAMG00000020417	ENSMAMG00000020395	ENSMAMG00000024836	ENSMAMG00000027541	ENSMAMG00000020377	ENSMAMG00000020374	gtf2h4 (ENSMAMG00000020366)	polr1h (ENSMAMG00000024493) #17	mgat1b (ENSMAMG00000020350)	vars2 (ENSMAMG00000020339)	ppp1r11 (ENSMAMG00000024406) #16	ENSMAMG00000020323	ENSMAMG00000027626	ENSMAMG00000020305	ENSMAMG00000020301	ENSMAMG00000020287 #22	ENSMAMG00000020281	ENSMAMG00000020275	ENSMAMG00000020265	ENSMAMG00000028634	ENSMAMG00000020261	ENSMAMG00000025701	si:ch211-215a10.4 (ENSMAMG00000020252)	abcf1 (ENSMAMG00000020247)	mrps18b (ENSMAMG00000020243)	ppp1r10 (ENSMAMG00000020241)	agr2 (ENSMAMG00000020237)	tspan13b (ENSMAMG00000020224)
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00390000004417.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT01030000234542.b.a.a.a.a
Climbing perch	MODERN SPECIES	2	ENSATEG00000011827	ENSATEG00000011835	ccn2b (ENSATEG00000011878)	ENSATEG00000011908	ENSATEG00000012131	ENSATEG00000012140	ENSATEG00000012157	ENSATEG00000012253	ppp1r11 (ENSATEG00000012269) #16	vars2 (ENSATEG00000012291)	mgat1b (ENSATEG00000012332)	ddx39b (ENSATEG00000012366)	polr1h (ENSATEG00000012395) #17	gtf2h4 (ENSATEG00000012410)	ENSATEG00000012463	ENSATEG00000012514 #22	tnfa (ENSATEG00000012587)	ENSATEG00000012607	ENSATEG00000012669	bag6l (ENSATEG00000012682)	si:ch211-215a10.4 (ENSATEG00000012800)	abcf1 (ENSATEG00000012813)	ENSATEG00000012840	mrps18b (ENSATEG00000012949)	ppp1r10 (ENSATEG00000012958)	agr2 (ENSATEG00000012987)	tspan13b (ENSATEG00000013019)	ANKMY2 (ENSATEG00000013044)	ENSATEG00000013147	ENSATEG00000013165	ENSATEG00000013193
Siamese fighting fish	MODERN SPECIES	2			ENSBSLG00000009191	ENSBSLG00000009681	ENSBSLG00000009780	ENSBSLG00000010603	sacm1la (ENSBSLG00000010728)	ENSBSLG00000011016	ENSBSLG00000011025	ppp1r11 (ENSBSLG00000011036) #16	ENSBSLG00000011046	gtf2h4 (ENSBSLG00000011052)	polr1h (ENSBSLG00000011093) #17	mgat1b (ENSBSLG00000011101)	vars2 (ENSBSLG00000011130)	ENSBSLG00000012743 #22	ENSBSLG00000013957	tnfa (ENSBSLG00000013963)	ENSBSLG00000013969	ENSBSLG00000013973	ENSBSLG00000013984	atat1 (ENSBSLG00000013990)	si:ch211-215a10.4 (ENSBSLG00000014012)	abcf1 (ENSBSLG00000014024)	mrps18b (ENSBSLG00000014478)	ppp1r10 (ENSBSLG00000014495)	agr2 (ENSBSLG00000014534)	tspan13b (ENSBSLG00000014544)	sostdc1b (ENSBSLG00000014554)	ssr2 (ENSBSLG00000014558)	thsd7aa (ENSBSLG00000014581)
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00940000157047.n	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000177559	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT00940000154546.b	ENSGT00940000159083
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT00940000164559.A	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000157833.h.a	ENSGT00940000157047.n	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000177559	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT00940000155427.b	ENSGT00950000182883.a.b.a	ENSGT00940000156923	ENSGT00950000183046.b.b
Oryzias	ANCESTRAL SPECIES	22		ENSGT00390000002457	ENSGT00390000010029	ENSGT00940000164651.a.a	ENSGT01090000260131.c	ENSGT00940000163195.A.d	ENSGT00390000008029	ENSGT00390000003051	ENSGT00950000183046.b.b	ENSGT00940000156923	ENSGT00950000182883.a.b.a	ENSGT00940000155427.b	ENSGT00940000155579.b	ENSGT00940000156139	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000008658	ENSGT00940000157010.n	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000159263	ENSGT00390000010554	ENSGT00940000158329	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00390000008126 #17	ENSGT00390000014159
Oryzias_b	ANCESTRAL SPECIES	22			ENSGT00390000002457	ENSGT00390000010029	ENSGT00940000164651.a.a	ENSGT00940000163195.A.d	ENSGT00390000008029	ENSGT00390000003051	ENSGT00950000183046.b.b	ENSGT00940000156923	ENSGT00950000182883.a.b.a	ENSGT00940000155427.b	ENSGT00940000155579.b	ENSGT00940000156139	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000008658	ENSGT00940000157010.n	ENSGT00960000191228	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000159263	ENSGT00390000010554	ENSGT00940000158329	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00390000008126 #17
Indian medaka	MODERN SPECIES	3	si:ch211-165i18.2 (ENSOMEG00000007309)	tac1 (ENSOMEG00000007329)	sdhaf3 (ENSOMEG00000007347)	c1galt1a (ENSOMEG00000000182)	ENSOMEG00000007417	rpa3 (ENSOMEG00000007429)	umad1 (ENSOMEG00000007442)	glcci1a (ENSOMEG00000007454)	phf14 (ENSOMEG00000007586)	nxph1 (ENSOMEG00000007617)	ENSOMEG00000000186	thsd7aa (ENSOMEG00000007773)	sacm1la (ENSOMEG00000007839)	trnau1apa (ENSOMEG00000007873)	SH3BP5L (ENSOMEG00000007905)	GABBR1 (ENSOMEG00000007984) #22	tnfa (ENSOMEG00000008018)	atat1 (ENSOMEG00000008060)	ENSOMEG00000008073	si:ch211-215a10.4 (ENSOMEG00000008089)	tspan13b (ENSOMEG00000008117)	agr2 (ENSOMEG00000008140)	ppp1r10 (ENSOMEG00000008179)	mrps18b (ENSOMEG00000008194)	abcf1 (ENSOMEG00000008252)	ENSOMEG00000008277	ppp1r11 (ENSOMEG00000008300) #16	vars2 (ENSOMEG00000008360)	mgat1b (ENSOMEG00000008374)	polr1h (ENSOMEG00000008387) #17	gtf2h4 (ENSOMEG00000008442)
Javanese ricefish	MODERN SPECIES	2	ENSOJAG00000014392	sdc2 (ENSOJAG00000014379)	angpt1 (ENSOJAG00000014264)	ENSOJAG00000014247	ENSOJAG00000014229	ENSOJAG00000014204	ENSOJAG00000013992	ENSOJAG00000013832	ENSOJAG00000013815	ENSOJAG00000013800	nxph1 (ENSOJAG00000013793)	thsd7aa (ENSOJAG00000012796)	sacm1la (ENSOJAG00000012359)	trnau1apa (ENSOJAG00000012333)	SH3BP5L (ENSOJAG00000012315)	GABBR1 (ENSOJAG00000011349) #22	tnfa (ENSOJAG00000011271)	ATAT1 (ENSOJAG00000011222)	ENSOJAG00000011208	si:ch211-215a10.4 (ENSOJAG00000011192)	tspan13b (ENSOJAG00000011179)	ENSOJAG00000011147	ppp1r10 (ENSOJAG00000011095)	mrps18b (ENSOJAG00000010989)	abcf1 (ENSOJAG00000010466)	ENSOJAG00000010447	ppp1r11 (ENSOJAG00000010438) #16	vars2 (ENSOJAG00000009997)	mgat1b (ENSOJAG00000009971)	polr1h (ENSOJAG00000009962) #17	gtf2h4 (ENSOJAG00000009828)
Oryzias_a	ANCESTRAL SPECIES	18	ENSGT00940000158117	ENSGT00390000002457	ENSGT00390000010029	ENSGT00940000164651.a.a	ENSGT01090000260131.c	ENSGT00940000163195.A.d	ENSGT00390000008029	ENSGT00390000003051	ENSGT00950000183046.b.b	ENSGT00940000156923	ENSGT00950000182883.a.b.a	ENSGT00940000155427.b	ENSGT00940000155579.b	ENSGT00940000156139	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000008658	ENSGT00940000157010.n	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000159263	ENSGT00390000010554	ENSGT00940000158329	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00390000008126 #17	ENSGT00390000014159
Japanese Medaka HdrR	MODERN SPECIES	2	sdc2 (ENSORLG00000010202)	angpt1 (ENSORLG00000010226)	tac1 (ENSORLG00000023013)	sdhaf3 (ENSORLG00000010233)	c1galt1a (ENSORLG00000010239)	ENSORLG00000024141	rpa3 (ENSORLG00000029145)	umad1 (ENSORLG00000026608)	glcci1a (ENSORLG00000022880)	phf14 (ENSORLG00000010289)	nxph1 (ENSORLG00000010297)	thsd7aa (ENSORLG00000010327)	sacm1la (ENSORLG00000010387)	trnau1apa (ENSORLG00000010428)	ENSORLG00000010450	GABBR1 (ENSORLG00000010466) #22	tnfa (ENSORLG00000010470)	atat1 (ENSORLG00000010479)	ENSORLG00000027889	si:ch211-215a10.4 (ENSORLG00000010502)	tspan13b (ENSORLG00000010519)	agr2 (ENSORLG00000024595)	ppp1r10 (ENSORLG00000010539)	abcf1 (ENSORLG00000010612)	mrps18b (ENSORLG00000010546)	ENSORLG00000024463	ppp1r11 (ENSORLG00000025125) #16	vars2 (ENSORLG00000010632)	mgat1b (ENSORLG00000021933)	polr1h (ENSORLG00000028860) #17	gtf2h4 (ENSORLG00000010704)
Chinese medaka	MODERN SPECIES	13	ENSOSIG00000017773	angpt1 (ENSOSIG00000017771)	tac1 (ENSOSIG00000017766)	sdhaf3 (ENSOSIG00000017762)	c1galt1a (ENSOSIG00000017758)	ENSOSIG00000017756	ENSOSIG00000017752	rpa3 (ENSOSIG00000017750)	glcci1a (ENSOSIG00000017740)	phf14 (ENSOSIG00000015234)	nxph1 (ENSOSIG00000015216)	thsd7aa (ENSOSIG00000013837)	sacm1la (ENSOSIG00000013570)	trnau1apa (ENSOSIG00000013559)	SH3BP5L (ENSOSIG00000013467)	GABBR1 (ENSOSIG00000011069) #22	tnfa (ENSOSIG00000011047)	atat1 (ENSOSIG00000011045)	ENSOSIG00000011043	si:ch211-215a10.4 (ENSOSIG00000011042)	tspan13b (ENSOSIG00000011041)	agr2 (ENSOSIG00000011039)	ppp1r10 (ENSOSIG00000011036)	mrps18b (ENSOSIG00000011031)	abcf1 (ENSOSIG00000010118)	ENSOSIG00000010108	ppp1r11 (ENSOSIG00000010107) #16	vars2 (ENSOSIG00000009366)	mgat1b (ENSOSIG00000009351)	polr1h (ENSOSIG00000009350) #17	gtf2h4 (ENSOSIG00000009327)
Ovalentaria_B	ANCESTRAL SPECIES	38	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00940000157047.n	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926
Cichlidae	ANCESTRAL SPECIES	53	ENSGT00940000164559.A	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000155019.a.a	ENSGT00940000157833.h.a	ENSGT00530000063698.b	ENSGT00940000156139	ENSGT00940000155579.b	ENSGT00940000175860	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT00390000001994	ENSGT00390000002457
Pseudocrenilabrinae	ANCESTRAL SPECIES	31																ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554.i	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT00390000001994	ENSGT00390000002457
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	41																ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554.i	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT00390000001994	ENSGT00390000002457
Lyretail cichlid	MODERN SPECIES	391																GABBR1 (ENSNBRG00000020109) #22	tnfa (ENSNBRG00000020078)	atat1 (ENSNBRG00000020058)	ENSNBRG00000020046	ENSNBRG00000020029	abcf1 (ENSNBRG00000019920)	ppp1r10 (ENSNBRG00000019650)	agr2 (ENSNBRG00000019460)	tspan13b (ENSNBRG00000019422)	sostdc1b (ENSNBRG00000019394)	ssr2 (ENSNBRG00000019337)	ENSNBRG00000019264	asns (ENSNBRG00000019230)	tac1 (ENSNBRG00000019213)	sdhaf3 (ENSNBRG00000019206)	ENSNBRG00000019191
Haplochromini	ANCESTRAL SPECIES	47															ENSGT00390000001663.m.a.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554.i	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT00390000001994	ENSGT00390000002457
Burton s mouthbrooder	MODERN SPECIES	1124															ENSHBUG00000008324	ENSHBUG00000008303 #22
Haplochromini_A	ANCESTRAL SPECIES	53															ENSGT00390000001663.m.a.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554.i	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT00390000001994	ENSGT00390000002457
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	578																ENSPNYG00000011580 #22	tnfa (ENSPNYG00000011568)	atat1 (ENSPNYG00000011549)	ENSPNYG00000011534	bag6l (ENSPNYG00000011484)	si:ch211-215a10.4 (ENSPNYG00000011446)	abcf1 (ENSPNYG00000011419)	mrps18b (ENSPNYG00000011383)	ppp1r10 (ENSPNYG00000011242)	agr2 (ENSPNYG00000011172)	tspan13b (ENSPNYG00000011140)	sostdc1b (ENSPNYG00000011112)	ENSPNYG00000011073	asns (ENSPNYG00000011027)	tac1 (ENSPNYG00000010965)	sdhaf3 (ENSPNYG00000010957)
P. nyererei	MODERN SPECIES	454	ENSPNYG00000010494	mrpl36 (ENSPNYG00000010504)	ndufs6 (ENSPNYG00000010522)	ENSPNYG00000010549	irx1b (ENSPNYG00000010627)	med10 (ENSPNYG00000010640)	UBE2QL1 (ENSPNYG00000010653)	nsun2 (ENSPNYG00000010677)	srd5a1 (ENSPNYG00000010748)	TENT4A (ENSPNYG00000010769)	adcy2b (ENSPNYG00000010825)	CFAP90 (ENSPNYG00000010883)	trioa (ENSPNYG00000010924)	grb10a (ENSPNYG00000011063)	ENSPNYG00000011114	GABBR1 (ENSPNYG00000011129) #22
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00390000010866	ENSGT00390000015775	ENSGT00940000165426	ENSGT00940000160429.h.b	ENSGT00390000014501	ENSGT00940000161612	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811.b.b	ENSGT00940000156424.b.d	ENSGT00390000015121	ENSGT00940000154766.a.a	ENSGT00940000155909.o.b	ENSGT00390000001663.m.b.d.a	ENSGT00390000001663.m.a.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554.i	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00390000014900.a	ENSGT00940000155713.eb.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT00390000001994
Eastern happy	MODERN SPECIES	13	irx1b (ENSACLG00000014187)	med10 (ENSACLG00000014235)	UBE2QL1 (ENSACLG00000014245)	nsun2 (ENSACLG00000014258)	srd5a1 (ENSACLG00000014362)	TENT4A (ENSACLG00000014408)	adcy2b (ENSACLG00000014461)	CFAP90 (ENSACLG00000014523)	trioa (ENSACLG00000014593)	grb10a (ENSACLG00000014779)	ENSACLG00000014810	ENSACLG00000014822	ENSACLG00000014836	ENSACLG00000014873	ENSACLG00000014889	GABBR1 (ENSACLG00000014905) #22	tnfa (ENSACLG00000014967)	atat1 (ENSACLG00000015015)	ENSACLG00000015143	bag6l (ENSACLG00000015233)	si:ch211-215a10.4 (ENSACLG00000015313)	abcf1 (ENSACLG00000015365)	mrps18b (ENSACLG00000015409)	ppp1r10 (ENSACLG00000015430)	agr2 (ENSACLG00000015474)	tspan13b (ENSACLG00000015540)	sostdc1b (ENSACLG00000015583)	ENSACLG00000015607	ssr2 (ENSACLG00000015620)	ENSACLG00000015643	asns (ENSACLG00000015674)
Zebra mbuna	MODERN SPECIES	1104	ndufs6 (ENSMZEG00005000261)	ENSMZEG00005000252	irx1b (ENSMZEG00005000204)	med10 (ENSMZEG00005000163)	UBE2QL1 (ENSMZEG00005000149)	ENSMZEG00005000131	nsun2 (ENSMZEG00005000101)	srd5a1 (ENSMZEG00005000093)	TENT4A (ENSMZEG00005000080)	adcy2b (ENSMZEG00005018018)	CFAP90 (ENSMZEG00005018016)	ENSMZEG00005018012	trioa (ENSMZEG00005018002)	grb10a (ENSMZEG00005017993)	ENSMZEG00005017985	ENSMZEG00005017980 #22	tnfa (ENSMZEG00005017973)	atat1 (ENSMZEG00005017956)	ENSMZEG00005017950	bag6l (ENSMZEG00005017939)	si:ch211-215a10.4 (ENSMZEG00005017932)	abcf1 (ENSMZEG00005017919)	mrps18b (ENSMZEG00005017910)	ppp1r10 (ENSMZEG00005017906)	agr2 (ENSMZEG00005017900)	tspan13b (ENSMZEG00005017893)	sostdc1b (ENSMZEG00005017891)	ENSMZEG00005017886	ssr2 (ENSMZEG00005017882)	ENSMZEG00005017874	asns (ENSMZEG00005017860)
Nile tilapia	MODERN SPECIES	13	ddx39b (ENSONIG00000004740)	polr1h (ENSONIG00000041305) #17	gtf2h4 (ENSONIG00000004743)	SH3BP5L (ENSONIG00000004745)	ENSONIG00000032311	ENSONIG00000032142	ENSONIG00000042455	ENSONIG00000039508	glcci1a (ENSONIG00000030021)	ENSONIG00000031173	ENSONIG00000038107	ENSONIG00000028305	phf14 (ENSONIG00000013773)	ENSONIG00000032380	ENSONIG00000037580	GABBR1 (ENSONIG00000011603) #22	tnfa (ENSONIG00000034668)	atat1 (ENSONIG00000011609)	ENSONIG00000011611	ENSONIG00000036118	ENSONIG00000037308	ENSONIG00000038329	rpa3 (ENSONIG00000030077)	ENSONIG00000031479	ENSONIG00000028535	ENSONIG00000033956	sdhaf3 (ENSONIG00000027556)	ENSONIG00000032646	tac1 (ENSONIG00000036195)	asns (ENSONIG00000019648)	ENSONIG00000030600
Midas cichlid	MODERN SPECIES	383															ENSACIG00000022359	GABBR1 (ENSACIG00000022331) #22	ENSACIG00000022320	atat1 (ENSACIG00000022302)	ENSACIG00000022284	bag6l (ENSACIG00000022236)	si:ch211-215a10.4 (ENSACIG00000022220)	sdhaf3 (ENSACIG00000022215)	scin (ENSACIG00000022183)	ENSACIG00000022169	thsd7aa (ENSACIG00000022135)	ENSACIG00000022123	nxph1 (ENSACIG00000022116)
Pomacentridae	ANCESTRAL SPECIES	90	ENSGT00940000175860	ENSGT00940000155579.b	ENSGT00940000156139	ENSGT00530000063698.b	ENSGT00940000157047.n	ENSGT00940000157833.h.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000164559.A	ENSGT01050000244841.A.a.a.b	ENSGT00390000004097.b	ENSGT00940000158522.m	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000158341.a	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00940000164651.a.a	ENSGT01090000260131.c	ENSGT00940000163195.A.d	ENSGT00390000008029	ENSGT00390000003051	ENSGT00950000183046.b.b	ENSGT00940000176083	ENSGT00950000182883.a.b.a	ENSGT00940000155427.b	ENSGT00940000154546.b	ENSGT00390000002869
Pomacentridae_A	ANCESTRAL SPECIES	164																ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00940000164651.a.a	ENSGT01090000260131.c	ENSGT00940000163195.A.d	ENSGT00940000161647	ENSGT00390000008029	ENSGT00390000003051	ENSGT00950000183046.b.b	ENSGT00940000176083	ENSGT00950000182883.a.b.a	ENSGT00940000155427.b	ENSGT00940000154546.b
Amphiprion	ANCESTRAL SPECIES	34	ENSGT00390000001153 #16	ENSGT00940000175860	ENSGT00940000155579.b	ENSGT00940000156139	ENSGT00530000063698.b	ENSGT00940000157833.h.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000164559.A	ENSGT01050000244841.A.a.a.b.e	ENSGT00390000004097.b	ENSGT00940000158522.m	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000158341.a	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22
Orange clownfish	MODERN SPECIES	8	SACM1L (ENSAPEG00000008799)	trnau1apa (ENSAPEG00000008868)	ENSAPEG00000008892	ENSAPEG00000008896	ENSAPEG00000008934	STX12 (ENSAPEG00000009001)	ENSAPEG00000009019	gnrhr1 (ENSAPEG00000009072)	gatad2b (ENSAPEG00000009116)	ENSAPEG00000009170	txnipa (ENSAPEG00000009185)	ENSAPEG00000009210	arhgef1a (ENSAPEG00000009255)	gtf2h4 (ENSAPEG00000009332)	SH3BP5L (ENSAPEG00000009386)	GABBR1 (ENSAPEG00000009422) #22	ENSAPEG00000009600	ENSAPEG00000009610	ENSAPEG00000009644	ENSAPEG00000009716	ENSAPEG00000009728	mhc1zka (ENSAPEG00000009740)	ENSAPEG00000009760	ZHX1 (ENSAPEG00000009778)	ZHX2 (ENSAPEG00000009793)	COL14A1 (ENSAPEG00000009812)	ENSAPEG00000009965	ENSAPEG00000010007	ENPP2 (ENSAPEG00000010026)	ENSAPEG00000010146	ENSAPEG00000010371
Clown anemonefish	MODERN SPECIES	2664																GABBR1 (ENSAOCG00000021480) #22	ENSAOCG00000021413	ENSAOCG00000001564
Spiny chromis	MODERN SPECIES	762																GABBR1 (ENSAPOG00000019594) #22	tnfa (ENSAPOG00000019646)	atat1 (ENSAPOG00000019667)	ENSAPOG00000019686	bag6l (ENSAPOG00000019703)	ENSAPOG00000019734	ENSAPOG00000019794	rpa3 (ENSAPOG00000019815)
Bicolor damselfish	MODERN SPECIES	242	sacm1la (ENSSPAG00000004947)	trnau1apa (ENSSPAG00000005029)	ENSSPAG00000005043	ENSSPAG00000005051	ENSSPAG00000005058	STX12 (ENSSPAG00000005105)	ENSSPAG00000005122	ENSSPAG00000005191	gatad2b (ENSSPAG00000005608)	txnipa (ENSSPAG00000005640)	ENSSPAG00000005655	arhgef1a (ENSSPAG00000005683)	gtf2h4 (ENSSPAG00000005721)	SH3BP5L (ENSSPAG00000005786)	ENSSPAG00000005808	GABBR1 (ENSSPAG00000005864) #22	tnfa (ENSSPAG00000005911)	atat1 (ENSSPAG00000005925)	ENSSPAG00000005964	bag6l (ENSSPAG00000005975)	c1galt1a (ENSSPAG00000006017)	col28a1a (ENSSPAG00000006027)	rpa3 (ENSSPAG00000006091)	umad1 (ENSSPAG00000006123)	ENSSPAG00000006127	ENSSPAG00000006139
Cod	MODERN SPECIES	14	ENSGMOG00000035211	ENSGMOG00000035718	ENSGMOG00000030666	ccn2b (ENSGMOG00000016377)	ENSGMOG00000027638	ENSGMOG00000013937	trnau1apa (ENSGMOG00000016508)	ENSGMOG00000018942	ENSGMOG00000023761	ppp1r11 (ENSGMOG00000034428) #16	vars2 (ENSGMOG00000018960)	mgat1b (ENSGMOG00000018980)	polr1h (ENSGMOG00000008476) #17	gtf2h4 (ENSGMOG00000008479)	ENSGMOG00000028008	ENSGMOG00000007553 #22	tnfa (ENSGMOG00000022514)	ENSGMOG00000017734	ENSGMOG00000025337	bag6l (ENSGMOG00000017794)	si:ch211-215a10.4 (ENSGMOG00000013308)	abcf1 (ENSGMOG00000013281)	mrps18b (ENSGMOG00000013271)	ppp1r10 (ENSGMOG00000013210)	agr2 (ENSGMOG00000013168)	tspan13b (ENSGMOG00000034837)	bzw2 (ENSGMOG00000013192)	ENSGMOG00000032059	ENSGMOG00000034959	ENSGMOG00000024474	ANKMY2 (ENSGMOG00000004585)
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	12	ENSGT00940000156213.q.b	ENSGT00530000063698.b	ENSGT00940000157833.h.a	ENSGT00940000155019.a.a	ENSGT01000000214440.A.a.b.a.g.b.a	ENSGT00940000156139	ENSGT00970000193610	ENSGT00940000155579.b	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h.g #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276.n	ENSGT00940000161470.a.b	ENSGT00940000155115.a.a.a.a	ENSGT01000000220942	ENSGT00530000063877.b.b	ENSGT00390000006478	ENSGT00390000016613.c.e.b	ENSGT00940000157118.c.b	ENSGT00390000004923.A.c.a	ENSGT00940000165880.a	ENSGT00940000154301.a.b	ENSGT00940000161371	ENSGT00940000158303	ENSGT01050000244950.a.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	442				ENSGT00940000155019.a.a.c.a	ENSGT01000000214440.A.a.b.a.g.b.a.d	ENSGT00940000156139.c.a	ENSGT00940000155579.b.a	ENSGT00970000193610	ENSGT00390000001153.kb #16	ENSGT00940000159890	ENSGT00530000063632.B.a.e	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c.a	ENSGT00940000157642.h.g.a #22	ENSGT01060000248544.a.b.b.b.d	ENSGT00390000008276.n	ENSGT00940000161470.a.b.a	ENSGT00390000008276.m.a.a	ENSGT00940000154416.C.c.b	ENSGT00940000163999.a.c.b.a	ENSGT00530000063877.b.b	ENSGT00940000161470.a.b.b	ENSGT00940000155115.a.a.a.a	ENSGT00390000006478
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	144																ENSHHUG00000031080 #22	ENSHHUG00000031075 #22	tnfa (ENSHHUG00000031062)	atat1 (ENSHHUG00000031051)	ckma (ENSHHUG00000030958)	ENSHHUG00000030956	nccrp1 (ENSHHUG00000030948)	slc8a2a (ENSHHUG00000030442)	ENSHHUG00000030415	hnrnpl (ENSHHUG00000030362)	ENSHHUG00000030331	IRF2BP1 (ENSHHUG00000030328)	micu2 (ENSHHUG00000030316)	ENSHHUG00000030291	B3GAT1 (ENSHHUG00000030271)	ENSHHUG00000030258
Huchen	MODERN SPECIES	144															ENSHHUG00000031080 #22	ENSHHUG00000031075 #22	tnfa (ENSHHUG00000031062)	atat1 (ENSHHUG00000031051)	ckma (ENSHHUG00000030958)	ENSHHUG00000030956	nccrp1 (ENSHHUG00000030948)	slc8a2a (ENSHHUG00000030442)	ENSHHUG00000030415	hnrnpl (ENSHHUG00000030362)	ENSHHUG00000030331	IRF2BP1 (ENSHHUG00000030328)	micu2 (ENSHHUG00000030316)	ENSHHUG00000030291	B3GAT1 (ENSHHUG00000030271)	ENSHHUG00000030258	BBX (ENSHHUG00000030256)
Huchen	MODERN SPECIES	4942																ENSHHUG00000040055 #22
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00390000003571.g.f	ENSGT00940000159099.l.b	ENSGT00390000016277.a.l.b	ENSGT00390000007888.h	ENSGT00940000156213.q.b.a	ENSGT00530000063698.b.k.b	ENSGT00940000157833.h.a.c.a	ENSGT00940000155019.a.a.c.b	ENSGT01000000214440.A.a.b.a.g.b.a.c	ENSGT00940000156139.c.b	ENSGT00940000155579.b.b	ENSGT00390000001153.lb #16	ENSGT00530000063632.B.a.f	ENSGT00390000014159	ENSGT00390000018500.a.c.a	ENSGT00940000157642.h.g.a #22	ENSGT01060000248544.a.b.b.b.d	ENSGT00390000008276.m.a.a	ENSGT00940000154416.C.c.b.c	ENSGT00940000161470.a.b.a	ENSGT00940000155115.a.a.a.a.h	ENSGT00390000016613.c.e.b.e	ENSGT00940000157118.c.b.a	ENSGT00390000004923.A.c.a.f	ENSGT00940000165880.a.c	ENSGT00940000154301.b	ENSGT00940000158303.d	ENSGT01050000244950.a.b.y	ENSGT00940000155718.b.f	ENSGT00940000154641.B.a	ENSGT00940000154928.c.b.d
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000159099.l.b	ENSGT00390000016277.a.l.b	ENSGT00390000007888.h	ENSGT00940000156213.q.a.a.a.a	ENSGT00530000063698.b.k.b	ENSGT00940000157833.h.a.c.a	ENSGT00940000155019.a.a.c.a.a	ENSGT01000000214440.A.a.b.a.g.b.a.c	ENSGT00940000156139.c.b	ENSGT00940000155579.b.b	ENSGT00390000001153.lb #16	ENSGT00530000063632.B.a.f	ENSGT01060000252296	ENSGT00390000014159	ENSGT00390000018500.a.c.a	ENSGT00940000157642.h.g.a #22	ENSGT01060000248544.a.b.b.b.d	ENSGT00390000008276.m.a.a	ENSGT00940000154416.C.c.b.c	ENSGT00940000161470.a.b.a	ENSGT00940000155115.a.a.a.a.h	ENSGT00390000016613.c.e.b.e	ENSGT00940000157118.c.b.a	ENSGT00390000004923.A.c.a.f	ENSGT00940000165880.a.c	ENSGT00940000154301.a.b.b	ENSGT00940000174763	ENSGT00940000158303.d	ENSGT01050000244950.a.b.y	ENSGT00940000155718.b.f	ENSGT00940000154641.B.a
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000108316	EPB41 (ENSSSAG00000039495)	ccn2b (ENSSSAG00000110341)	TSAP1 (ENSSSAG00000044363)	ENSSSAG00000071496	ppp1r11 (ENSSSAG00000107802) #16	mgat1b (ENSSSAG00000088842)	ENSSSAG00000087877	ENSSSAG00000084802	ENSSSAG00000044545	gtf2h4 (ENSSSAG00000044583)	ENSSSAG00000044536	ENSSSAG00000083779	ENSSSAG00000106509	ENSSSAG00000081778	ENSSSAG00000044684 #22	ENSSSAG00000094356	tnfa (ENSSSAG00000044993)	ENSSSAG00000121388	ENSSSAG00000096552	ENSSSAG00000105188	ENSSSAG00000110118	e2f3 (ENSSSAG00000108509)	maco1a (ENSSSAG00000085295)	ldlrap1a (ENSSSAG00000055524)	fndc5b (ENSSSAG00000100267)	ENSSSAG00000106169	marcksl1b (ENSSSAG00000045029)	hdac1 (ENSSSAG00000045062)	ENSSSAG00000045355	ENSSSAG00000106543
River trout	MODERN SPECIES	29	rpl14 (ENSSTUG00000044741)	ENSSTUG00000044734	srsf4 (ENSSTUG00000044726)	ENSSTUG00000044720	ENSSTUG00000044713	ENSSTUG00000044690	ccn2b (ENSSTUG00000044663)	stx12 (ENSSTUG00000044639)	trnau1apa (ENSSTUG00000044629)	SACM1L (ENSSTUG00000043754)	ppp1r11 (ENSSTUG00000043719) #16	mgat1b (ENSSTUG00000043715)	ENSSTUG00000043695	gtf2h4 (ENSSTUG00000043659)	SH3BP5L (ENSSTUG00000043644)	ENSSTUG00000043361 #22	tnfa (ENSSTUG00000043332)	ENSSTUG00000043286	ENSSTUG00000043275	ENSSTUG00000043272	sox4a (ENSSTUG00000043267)	e2f3 (ENSSTUG00000043260)	maco1a (ENSSTUG00000043210)	ldlrap1a (ENSSTUG00000043192)	fndc5b (ENSSTUG00000043106)	marcksl1b (ENSSTUG00000043099)	hdac1 (ENSSTUG00000042939)	ENSSTUG00000042920	txlna (ENSSTUG00000041125)	KPNA6 (ENSSTUG00000040772)	KPNA6 (ENSSTUG00000040695)
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00390000007888.h	ENSGT00940000156213.q.b.a	ENSGT00530000063698.b.k.b	ENSGT00940000157833.h.a.c.a	ENSGT00940000155019.a.a.c.b	ENSGT01000000214440.A.a.b.a.g.b.a.c	ENSGT00940000156139.c.b	ENSGT00940000155579.b.b	ENSGT00970000193610.e	ENSGT00390000001153.lb #16	ENSGT00530000063632.B.a.f	ENSGT01060000250435	ENSGT00390000014159	ENSGT00390000018500.a.c.a	ENSGT01000000220290	ENSGT00940000157642.h.g.a #22	ENSGT01060000248544.a.b.b.b.d	ENSGT00390000008276.n	ENSGT00390000008276.m.a.a	ENSGT00940000154416.C.c.b.c	ENSGT00940000161470.a.b.a	ENSGT00940000155115.a.a.a.a.h	ENSGT00390000016613.c.e.b.e	ENSGT00940000157118.c.b.a	ENSGT00390000004923.A.c.a.f	ENSGT00940000165880.a.c	ENSGT00940000154301.a.b.d	ENSGT00940000158303.d	ENSGT01050000244950.a.b.y	ENSGT00940000155718.b.f	ENSGT00940000154641.B.a
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000068205	ENSOMYG00000064238	ENSOMYG00000005110	srsf4 (ENSOMYG00000051923)	ENSOMYG00000004983	ENSOMYG00000004914	ccn2b (ENSOMYG00000071790)	stx12 (ENSOMYG00000004887)	trnau1apa (ENSOMYG00000004869)	ENSOMYG00000004711	ppp1r11 (ENSOMYG00000060846) #16	ENSOMYG00000004454	gtf2h4 (ENSOMYG00000004423)	ENSOMYG00000051050	ENSOMYG00000004307	ENSOMYG00000075110 #22	TNFa3 (ENSOMYG00000058346)	ENSOMYG00000058190	ENSOMYG00000003996	ENSOMYG00000025409	e2f3 (ENSOMYG00000003782)	maco1a (ENSOMYG00000003814)	ldlrap1a (ENSOMYG00000057261)	fndc5b (ENSOMYG00000069184)	ENSOMYG00000066088	marcksl1b (ENSOMYG00000048790)	hdac1 (ENSOMYG00000003917)	txlna (ENSOMYG00000056685)	KPNA6 (ENSOMYG00000060451)	khdrbs1b (ENSOMYG00000003723)	ENSOMYG00000049486
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000156213.q.a.b	ENSGT00940000158275.cb	ENSGT00530000063698.b.k.b	ENSGT00940000157833.h.a.c.a	ENSGT00940000155019.a.a.c.b	ENSGT01000000214440.A.a.b.a.g.b.a.c	ENSGT00940000156139.c.b	ENSGT00940000155579.b.b	ENSGT00970000193610.e	ENSGT00390000001153.lb #16	ENSGT00530000063632.B.a.f	ENSGT01060000250435	ENSGT00390000014159	ENSGT00390000018500.a.c.a	ENSGT01000000220290	ENSGT00940000157642.h.g.a #22	ENSGT01060000248544.a.b.b.b.d	ENSGT00390000008276.n	ENSGT00940000161470.a.b.a	ENSGT00940000155115.a.a.a.a.h	ENSGT00390000016613.c.e.b.e	ENSGT00940000157118.c.b.a	ENSGT00390000004923.A.c.a.f	ENSGT00940000165880.a.c	ENSGT00940000154301.a.b.d	ENSGT00940000158303.d	ENSGT01050000244950.a.b.y	ENSGT00940000155718.b.f	ENSGT00940000154641.B.a	ENSGT00940000154928.c.b.d	ENSGT01030000234513.A.a.a.a.b.c.a
Coho salmon	MODERN SPECIES	5	ABHD5 (ENSOKIG00005029874)	rpl14 (ENSOKIG00005029882)	ENSOKIG00005029901	ENSOKIG00005029886	ENSOKIG00005029911	ENSOKIG00005029952	ccn2b (ENSOKIG00005030032)	stx12 (ENSOKIG00005030057)	trnau1apa (ENSOKIG00005030103)	sacm1la (ENSOKIG00005030305)	ppp1r11 (ENSOKIG00005031308) #16	mgat1b (ENSOKIG00005031323)	ENSOKIG00005031337	gtf2h4 (ENSOKIG00005031384)	SH3BP5L (ENSOKIG00005031487)	GABBR1 (ENSOKIG00005031600) #22	ENSOKIG00005033807	tnfa (ENSOKIG00005033826)	ENSOKIG00005033867	ENSOKIG00005033875	ENSOKIG00005033884	ENSOKIG00005033891	ENSOKIG00005033905	SOX4 (ENSOKIG00005033917)	e2f3 (ENSOKIG00005033958)	maco1a (ENSOKIG00005033963)	ENSOKIG00005033990	ldlrap1a (ENSOKIG00005033995)	fndc5b (ENSOKIG00005034002)	marcksl1b (ENSOKIG00005034034)	hdac1 (ENSOKIG00005034096)
Chinook salmon	MODERN SPECIES	24	stx12 (ENSOTSG00005024566)	TRNAU1AP (ENSOTSG00005024561)	sacm1la (ENSOTSG00005022236)	ENSOTSG00005022219	ENSOTSG00005022218	ppp1r11 (ENSOTSG00005022214) #16	mgat1b (ENSOTSG00005022213)	ENSOTSG00005022212	gtf2h4 (ENSOTSG00005022198)	SH3BP5L (ENSOTSG00005022196)	zdhhc15b (ENSOTSG00005022096)	UPRT (ENSOTSG00005022089)	abcb7 (ENSOTSG00005022088)	ENSOTSG00005022086	ENSOTSG00005021930	ENSOTSG00005021929 #22	ENSOTSG00005021928	ENSOTSG00005021927	fndc5b (ENSOTSG00005021926)	ldlrap1a (ENSOTSG00005021923)	khdrbs1b (ENSOTSG00005021920)	ENSOTSG00005021919	ENSOTSG00005021918	zgc:91944 (ENSOTSG00005021916)	ENSOTSG00005021915	ENSOTSG00005021913	hpca (ENSOTSG00005021912)	hpcal4 (ENSOTSG00005021911)	fam49al (ENSOTSG00005021910)	nup42 (ENSOTSG00005021909)	rims3 (ENSOTSG00005021908)
Salmoninae	ANCESTRAL SPECIES	1197															ENSGT00390000018500.a.c.b	ENSGT00940000157642.h.g.b #22	ENSGT01060000248544.a.b.b.b.c	ENSGT00390000008276.m.a.b
Salmoninae_a	ANCESTRAL SPECIES	28	ENSGT00940000156213.q.a.b	ENSGT00940000156213.q.b.b	ENSGT00530000063698.b.k.a	ENSGT00940000157833.h.a.c.b	ENSGT00940000155019.a.a.c.a.b	ENSGT01000000214440.A.a.b.a.g.b.a.d	ENSGT00940000156139.c.a	ENSGT00940000155579.b.a	ENSGT00970000193610	ENSGT00390000001153.kb #16	ENSGT00940000159890	ENSGT00530000063632.B.a.e	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000018500.a.c.b	ENSGT00940000157642.h.g.b #22	ENSGT01060000248544.a.b.b.b.c	ENSGT00390000008276.m.a.b	ENSGT00940000154416.C.c.b.d	ENSGT00530000063877.b.b	ENSGT00940000161470.a.b.b	ENSGT00940000177094	ENSGT00940000155115.a.a.a.a.g	ENSGT00390000006478	ENSGT00390000016613.c.e.b.f	ENSGT00940000157118.c.b.b	ENSGT00390000004923.A.c.a.e	ENSGT00940000165880.a.d	ENSGT00940000154301.a.b	ENSGT00940000161371	ENSGT00940000158303.c
Oncorhynchus	ANCESTRAL SPECIES	29	ENSGT00940000156213.q.a.b	ENSGT00940000156213.q.b.b	ENSGT00530000063698.b.k.a	ENSGT00940000157833.h.a.c.b	ENSGT00940000155019.a.a.c.a.b.a	ENSGT01000000214440.A.a.b.a.g.b.a.d	ENSGT00940000156139.c.a	ENSGT00940000155579.b.a	ENSGT00970000193610.f	ENSGT00390000001153.kb #16	ENSGT00940000159890	ENSGT00530000063632.B.a.e	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000018500.a.c.b	ENSGT00940000157642.h.g.b #22	ENSGT01060000248544.a.b.b.b.c	ENSGT00390000008276.m.a.b	ENSGT00940000154416.C.c.b.d	ENSGT00530000063877.b.b	ENSGT00940000161470.a.b.b	ENSGT01070000254094	ENSGT00940000177094	ENSGT00940000155115.a.a.a.a.g	ENSGT00390000006478	ENSGT00390000016613.c.e.b.f	ENSGT00940000157118.c.b.b	ENSGT00390000004923.A.c.a.e	ENSGT00940000165880.a.d	ENSGT00940000154301.a.b.c	ENSGT00940000161371
Rainbow trout	MODERN SPECIES	9	ccn2b (ENSOMYG00000004892)	stx12 (ENSOMYG00000038744)	ENSOMYG00000050234	ENSOMYG00000055454	trnau1apa (ENSOMYG00000038818)	ENSOMYG00000039110	ENSOMYG00000039992	ppp1r11 (ENSOMYG00000053610) #16	vars2 (ENSOMYG00000040010)	ENSOMYG00000070435	mgat1b (ENSOMYG00000040025)	ddx39b (ENSOMYG00000040041)	polr1h (ENSOMYG00000040084) #17	ENSOMYG00000040092	ENSOMYG00000064612	ENSOMYG00000004231 #22	ENSOMYG00000062312	tnfa (ENSOMYG00000057649)	ENSOMYG00000040176	ENSOMYG00000049016	ENSOMYG00000040155	nrsn1l (ENSOMYG00000076160)	ENSOMYG00000056607	ENSOMYG00000062740	ENSOMYG00000066590	ENSOMYG00000067878	SOX4 (ENSOMYG00000040122)	ENSOMYG00000059155	ENSOMYG00000053596	e2f3 (ENSOMYG00000040206)	ENSOMYG00000072068
Oncorhynchus_a	ANCESTRAL SPECIES	117																ENSGT00940000157642.h.g.b #22	ENSGT01060000248544.a.b.b.b.c	ENSGT00390000008276.m.a.b	ENSGT00940000154416.C.c.b.d	ENSGT00530000063877.b.b	ENSGT00940000161470.a.b.b	ENSGT01070000254094	ENSGT00940000155115.a.a.a.a.g	ENSGT00390000006478	ENSGT00390000016613.c.e.b.f	ENSGT00940000157118.c.b.b	ENSGT00390000004923.A.c.a.e	ENSGT00940000165880.a.d	ENSGT00940000154301.a.b.c	ENSGT00940000161371	ENSGT00940000158303.c
Coho salmon	MODERN SPECIES	8	ENSOKIG00005007562	ENSOKIG00005007542	ENSOKIG00005004680	ccn2b (ENSOKIG00005004370)	stx12 (ENSOKIG00005004326)	trnau1apa (ENSOKIG00005004268)	SACM1L (ENSOKIG00005033751)	ENSOKIG00005033604	ppp1r11 (ENSOKIG00005033581) #16	ENSOKIG00005033576	vars2 (ENSOKIG00005032983)	mgat1b (ENSOKIG00005032892)	ddx39b (ENSOKIG00005032651)	SH3BP5L (ENSOKIG00005032624)	polr1h (ENSOKIG00005032611) #17	GABBR1 (ENSOKIG00005030996) #22	tnfa (ENSOKIG00005030901)	atat1 (ENSOKIG00005030885)	ENSOKIG00005030877	ENSOKIG00005030863	ENSOKIG00005030855	nrsn1l (ENSOKIG00005030844)	SOX4 (ENSOKIG00005030813)	ENSOKIG00005030803	ENSOKIG00005030791	e2f3 (ENSOKIG00005030776)	ENSOKIG00005030761	ENSOKIG00005030712	maco1a (ENSOKIG00005030541)	ldlrap1a (ENSOKIG00005030478)	fndc5b (ENSOKIG00005030433)
Salmo	ANCESTRAL SPECIES	2	ENSGT01090000260093.b.f.u	ENSGT01090000260093.b.e	ENSGT00940000156213.q.a.a.b	ENSGT00530000063698.b.k.a	ENSGT00940000157833.h.a.c.b	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000156139.c.a	ENSGT00940000155579.b.a	ENSGT00970000193610	ENSGT00390000001153.kb #16	ENSGT00940000159890	ENSGT00530000063632.B.a.e	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000018500.a.c.b	ENSGT00940000157642.h.g.b #22	ENSGT01060000248544.a.b.b.b.c	ENSGT00390000008276.m.a.b	ENSGT00940000154416.C.c.b.d	ENSGT00530000063877.b.b	ENSGT00940000161470.a.b.b	ENSGT00940000177094	ENSGT00940000155115.a.a.a.a.g	ENSGT00390000006478	ENSGT00390000016613.c.e.b.f	ENSGT00940000157118.c.b.b	ENSGT00390000004923.A.c.a.e	ENSGT00940000165880.a.d	ENSGT00940000154301.a.b.a	ENSGT00940000161371	ENSGT00940000158303.c
Atlantic salmon	MODERN SPECIES	19	ENSSSAG00000119531	ENSSSAG00000103234	ccn2b (ENSSSAG00000044477)	stx12 (ENSSSAG00000044454)	ENSSSAG00000108217	trnau1apa (ENSSSAG00000071476)	ENSSSAG00000042946	ENSSSAG00000071515	ppp1r11 (ENSSSAG00000071517) #16	vars2 (ENSSSAG00000071544)	ENSSSAG00000112386	mgat1b (ENSSSAG00000071615)	ddx39b (ENSSSAG00000071620)	ENSSSAG00000098775	ENSSSAG00000119034	ENSSSAG00000055329 #22	tnfa (ENSSSAG00000093995)	atat1 (ENSSSAG00000055356)	ENSSSAG00000089802	ENSSSAG00000071646	nrsn1l (ENSSSAG00000071649)	SOX4 (ENSSSAG00000099132)	ENSSSAG00000098321	e2f3 (ENSSSAG00000087885)	srfbp1 (ENSSSAG00000107531)	ldlrap1a (ENSSSAG00000103711)	fndc5b (ENSSSAG00000109243)	marcksl1b (ENSSSAG00000064995)	hdac1 (ENSSSAG00000063696)	eif3i (ENSSSAG00000115182)	txlna (ENSSSAG00000057745)
Northern pike	MODERN SPECIES	9	ENSELUG00000030179	EPB41 (ENSELUG00000017623)	ccn2b (ENSELUG00000000696)	stx12 (ENSELUG00000017669)	trnau1apa (ENSELUG00000017686)	sacm1la (ENSELUG00000000714)	ENSELUG00000017769	ppp1r11 (ENSELUG00000017793) #16	vars2 (ENSELUG00000017824)	mgat1b (ENSELUG00000017857)	ddx39b (ENSELUG00000017904)	polr1h (ENSELUG00000017943) #17	gtf2h4 (ENSELUG00000018007)	SH3BP5L (ENSELUG00000018052)	ENSELUG00000029377	GABBR1 (ENSELUG00000018109) #22	tnfa (ENSELUG00000000735)	atat1 (ENSELUG00000000763)	ENSELUG00000018275	tlr22 (ENSELUG00000018283)	ENSELUG00000030696	sox4a (ENSELUG00000018340)	e2f3 (ENSELUG00000000774)	srfbp1 (ENSELUG00000027712)	maco1a (ENSELUG00000018423)	ldlrap1a (ENSELUG00000018435)	ENSELUG00000027313	fndc5b (ENSELUG00000018461)	ENSELUG00000031009	marcksl1b (ENSELUG00000001191)	hdac1 (ENSELUG00000000791)
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000157642.h.h #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000157642.h.h #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000157642.h.h #22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000157642.h.h #22
River trout	MODERN SPECIES	86																ENSSTUG00000039938 #22
Huchen	MODERN SPECIES	9825																ENSHHUG00000008659 #22
Otomorpha	ANCESTRAL SPECIES	160							ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00930000152259	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT01050000244950.a.b	ENSGT00940000158303	ENSGT00940000161371	ENSGT00940000154301.b	ENSGT01100000263935
Otophysi	ANCESTRAL SPECIES	95	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811.b.b	ENSGT00940000156424.b	ENSGT00390000015121	ENSGT00940000154416.C.c.b	ENSGT00390000008276	ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00940000155579.b	ENSGT00940000162418	ENSGT00630000089917	ENSGT00940000158255	ENSGT00940000166893	ENSGT00390000011559	ENSGT00950000182944.D	ENSGT00950000183161.a.a	ENSGT00390000003781.e.a	ENSGT00940000166438	ENSGT00940000164105.b	ENSGT00390000014184	ENSGT00940000156985.h	ENSGT00940000156206.e
Characiphysae	ANCESTRAL SPECIES	51	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811.b.b	ENSGT00940000156424.b	ENSGT00390000015121	ENSGT00940000154416.C.c.b	ENSGT00390000008276	ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00940000155579.b	ENSGT00940000162418	ENSGT00630000089917	ENSGT00940000158255	ENSGT00940000166893	ENSGT00390000011559	ENSGT00950000182944.D.m	ENSGT00950000182944.D.n	ENSGT00950000183161.a.a	ENSGT00390000003781.e.a	ENSGT00940000166438	ENSGT00940000164105.b	ENSGT00390000014184	ENSGT00940000156985.h
Channel catfish	MODERN SPECIES	3	Srd5a1 (ENSIPUG00000014884)	TENT4A (ENSIPUG00000014941)	adcy2b (ENSIPUG00000015052)	c12h5orf49 (ENSIPUG00000015486)	ENSIPUG00000015493	atat1 (ENSIPUG00000015504)	c12h6orf47 (ENSIPUG00000015544)	ppp1r11 (ENSIPUG00000015555) #16	Vars2 (ENSIPUG00000015573)	MGAT1 (ENSIPUG00000015700)	DDX39B (ENSIPUG00000015733)	polr1h (ENSIPUG00000015845) #17	gtf2h4 (ENSIPUG00000015859)	sh3bp5l (ENSIPUG00000015879)	ENSIPUG00000015916	ENSIPUG00000015929 #22	tnfa (ENSIPUG00000016025)	sacm1la (ENSIPUG00000016062)	nelfe (ENSIPUG00000016138)	zbtb12 (ENSIPUG00000016219)	skiv2l (ENSIPUG00000016263)	ENSIPUG00000016397	tmem268 (ENSIPUG00000016417)	neu1 (ENSIPUG00000016457)	neu1 (ENSIPUG00000016511)	prrc2a (ENSIPUG00000016528)	csnk2b (ENSIPUG00000016575)	pdia8 (ENSIPUG00000016619)	ENSIPUG00000016655	ENSIPUG00000016661	ints3 (ENSIPUG00000016699)
Characiphysae_b	ANCESTRAL SPECIES	126	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811.b.b	ENSGT00940000156424.b	ENSGT00390000015121	ENSGT00940000154416.C.c.b	ENSGT00390000008276	ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00940000155579.b	ENSGT00940000162418	ENSGT00630000089917	ENSGT00940000158255	ENSGT00940000166893	ENSGT00390000011559	ENSGT00950000182944.D.m	ENSGT00950000182944.D.n	ENSGT00950000183161.a.a	ENSGT00390000003781.e.a	ENSGT00940000166438	ENSGT00940000164105.b	ENSGT00390000014184	ENSGT00940000156985.h
Characoidei	ANCESTRAL SPECIES	79	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811.b.b	ENSGT00940000156424.b	ENSGT00390000015121	ENSGT00940000154416.C.c.b	ENSGT00390000008276	ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00940000155579.b	ENSGT00940000162418	ENSGT00630000089917	ENSGT00940000158255	ENSGT00940000166893	ENSGT00390000011559	ENSGT00950000182944.D.m	ENSGT00950000182944.D.n	ENSGT00950000183161.a.a	ENSGT00390000003781.e.a	ENSGT00940000166438	ENSGT00940000164105.b	ENSGT00390000014184	ENSGT00940000156985.h
Mexicana tetra	MODERN SPECIES	15	nsun2 (ENSAMXG00000017682)	srd5a1 (ENSAMXG00000030003)	TENT4A (ENSAMXG00000017691)	adcy2b (ENSAMXG00000036928)	CFAP90 (ENSAMXG00000035413)	ENSAMXG00000033642	atat1 (ENSAMXG00000030845)	ENSAMXG00000029531	ppp1r11 (ENSAMXG00000017736) #16	vars2 (ENSAMXG00000017773)	mgat1b (ENSAMXG00000029611)	ddx39b (ENSAMXG00000017837)	polr1h (ENSAMXG00000017854) #17	gtf2h4 (ENSAMXG00000017868)	SH3BP5L (ENSAMXG00000017912)	GABBR1 (ENSAMXG00000011615) #22	tnfa (ENSAMXG00000011611)	sacm1la (ENSAMXG00000011609)	zbtb12.2 (ENSAMXG00000011602)	csnk2b (ENSAMXG00000011597)	prrc2a (ENSAMXG00000011586)	neu1 (ENSAMXG00000030289)	neu1 (ENSAMXG00000042543)	ENSAMXG00000011562	ENSAMXG00000035594	skic2 (ENSAMXG00000011517)	nelfe (ENSAMXG00000011495)	pdia8 (ENSAMXG00000011486)	ENSAMXG00000036053	ints3 (ENSAMXG00000011437)	npr1a (ENSAMXG00000011429)
Red-bellied piranha	MODERN SPECIES	186	TENT4A (ENSPNAG00000026563)	adcy2b (ENSPNAG00000004080)	CFAP90 (ENSPNAG00000006205)	ENSPNAG00000004881	atat1 (ENSPNAG00000026761)	ENSPNAG00000026772	ppp1r11 (ENSPNAG00000004107) #16	vars2 (ENSPNAG00000026793)	mgat1b (ENSPNAG00000026881)	ddx39b (ENSPNAG00000026926)	polr1h (ENSPNAG00000004149) #17	gtf2h4 (ENSPNAG00000027035)	SH3BP5L (ENSPNAG00000027054)	ENSPNAG00000027072	ENSPNAG00000027102	GABBR1 (ENSPNAG00000006149) #22	tnfa (ENSPNAG00000006775)	sacm1la (ENSPNAG00000005271)	prrc2a (ENSPNAG00000027280)	csnk2b (ENSPNAG00000027361)	pdia8 (ENSPNAG00000004229)	ENSPNAG00000027446	ints3 (ENSPNAG00000027555)	npr1a (ENSPNAG00000027637)	mylipa (ENSPNAG00000027671)	dtnbp1b (ENSPNAG00000027705)	jarid2b (ENSPNAG00000004737)
Electric eel	MODERN SPECIES	340														gtf2h4 (ENSEEEG00000008603)	SH3BP5L (ENSEEEG00000008710)	GABBR1 (ENSEEEG00000008714) #22	tnfa (ENSEEEG00000008761)	sacm1la (ENSEEEG00000008781)	zbtb12.2 (ENSEEEG00000009000)	nelfe (ENSEEEG00000009001)	skic2 (ENSEEEG00000009013)	PRRT1 (ENSEEEG00000009110)	ENSEEEG00000009111	neu1 (ENSEEEG00000009113)	neu1 (ENSEEEG00000009118)	prrc2a (ENSEEEG00000009124)	csnk2b (ENSEEEG00000009126)	pdia8 (ENSEEEG00000009135)	ints3 (ENSEEEG00000009222)	npr1a (ENSEEEG00000009232)	mylipa (ENSEEEG00000009249)
Cyprinoidei	ANCESTRAL SPECIES	15	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811.b.b	ENSGT00940000156424.b	ENSGT00390000015121	ENSGT00940000154416.C.c.b	ENSGT00390000008276.e	ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159	ENSGT00390000018500.a.c	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00940000155579.b	ENSGT00940000162418.a	ENSGT00940000162418.b	ENSGT00630000089917	ENSGT00940000158255	ENSGT00940000162382	ENSGT00390000011559	ENSGT00950000182944.D.o	ENSGT00950000182944.D.p	ENSGT00950000183161.a.a	ENSGT00390000003781.e.a	ENSGT00940000166438	ENSGT00940000164105.b	ENSGT00390000014184
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	304															ENSGT00390000018500.a.c.g	ENSGT00940000157642.h.i #22	ENSGT01060000248544.a.b.b.b.b	ENSGT00940000155579.b.e	ENSGT00940000162418.a.a	ENSGT00630000089917.j	ENSGT00940000158255.a	ENSGT00940000162382.m	ENSGT00390000011559.d	ENSGT00950000182944.D.o.b	ENSGT00950000182944.D.p.a	ENSGT00950000183161.a.a.c	ENSGT00390000003781.e.a.m	ENSGT00940000166438	ENSGT00940000164105.b.f	ENSGT00390000014184.i	ENSGT00940000156985.h.i
Cyprininae_a	ANCESTRAL SPECIES	147	ENSGT00940000156424.b.a	ENSGT00390000015121.e	ENSGT00940000154416.C.c.b.f.a	ENSGT00390000008276.e.b	ENSGT00940000154416.C.c.b.e	ENSGT00390000008276.e.a.b	ENSGT00970000193610.a	ENSGT00390000001153 #16	ENSGT00940000159890.c	ENSGT00530000063632.B.a.c.b	ENSGT00530000063632.B.a.c.a	ENSGT00940000160110.c	ENSGT00390000008126 #17	ENSGT00390000014159.m	ENSGT00390000018500.a.c.g	ENSGT00940000157642.h.i #22	ENSGT01060000248544.a.b.b.b.b	ENSGT00940000155579.b.e	ENSGT00940000162418.a.a	ENSGT00630000089917.j	ENSGT00940000158255.a	ENSGT00940000162382.m	ENSGT00390000011559.d	ENSGT00950000182944.D.o.b	ENSGT00950000182944.D.p.a	ENSGT00950000183161.a.a.c	ENSGT00390000003781.e.a.m	ENSGT00940000164105.b.f	ENSGT00390000014184.i	ENSGT00940000156985.h.i	ENSGT00940000156206.e.b
Common carp reference	MODERN SPECIES	31	irx1b (ENSCCRG00000016663)	med10 (ENSCCRG00000009145)	UBE2QL1 (ENSCCRG00000057132)	nsun2 (ENSCCRG00000005157)	srd5a1 (ENSCCRG00000077587)	TENT4A (ENSCCRG00000005017)	adcy2b (ENSCCRG00000053634)	CFAP90 (ENSCCRG00000069317)	ENSCCRG00000044529	atat1 (ENSCCRG00000044562)	ppp1r11 (ENSCCRG00000055468) #16	mgat1b (ENSCCRG00000076869)	ddx39b (ENSCCRG00000042890)	polr1h (ENSCCRG00000007162) #17	ENSCCRG00000064855	ENSCCRG00000007182 #22	tnfa (ENSCCRG00000038973)	sacm1la (ENSCCRG00000053168)	zbtb12.2 (ENSCCRG00000060675)	skic2 (ENSCCRG00000011803)	ENSCCRG00000011810	ENSCCRG00000011808	neu1 (ENSCCRG00000011776)	ENSCCRG00000056124	prrc2a (ENSCCRG00000077516)	csnk2b (ENSCCRG00000036079)	ENSCCRG00000003202	ints3 (ENSCCRG00000002797)	npr1a (ENSCCRG00000038385)	ENSCCRG00000064029	mylipa (ENSCCRG00000012480)
Golden-line barbel	MODERN SPECIES	204	med10 (ENSSGRG00000015706)	nsun2 (ENSSGRG00000015312)	srd5a1 (ENSSGRG00000015309)	TENT4A (ENSSGRG00000015302)	adcy2b (ENSSGRG00000014845)	ENSSGRG00000014825	ENSSGRG00000014823	ENSSGRG00000014820	ppp1r11 (ENSSGRG00000014817) #16	vars2 (ENSSGRG00000014772)	mgat1b (ENSSGRG00000014769)	polr1h (ENSSGRG00000014768) #17	ddx39b (ENSSGRG00000014740)	gtf2h4 (ENSSGRG00000014738)	SH3BP5L (ENSSGRG00000014737)	ENSSGRG00000014054 #22	tnfa (ENSSGRG00000014041)	sacm1la (ENSSGRG00000013957)	zbtb12.2 (ENSSGRG00000013952)	nelfe (ENSSGRG00000013912)	skic2 (ENSSGRG00000013780)	ENSSGRG00000013777	ENSSGRG00000013776	ENSSGRG00000013772	prrc2a (ENSSGRG00000013725)	csnk2b (ENSSGRG00000013710)	ENSSGRG00000013707	ints3 (ENSSGRG00000013661)	npr1a (ENSSGRG00000012299)	mylipa (ENSSGRG00000012288)
Goldfish	MODERN SPECIES	983	irx1b (ENSCARG00000048656)	ENSCARG00000048677	UBE2QL1 (ENSCARG00000048715)	nsun2 (ENSCARG00000048780)	srd5a1 (ENSCARG00000049408)	TENT4A (ENSCARG00000049440)	adcy2b (ENSCARG00000049614)	ENSCARG00000050867	ENSCARG00000050879	ppp1r11 (ENSCARG00000050896) #16	mgat1b (ENSCARG00000050900)	ddx39b (ENSCARG00000050917)	polr1h (ENSCARG00000051072) #17	gtf2h4 (ENSCARG00000051135)	SH3BP5L (ENSCARG00000051357)	GABBR1 (ENSCARG00000051615) #22	tnfa (ENSCARG00000055161)	sacm1la (ENSCARG00000055212)	zbtb12.2 (ENSCARG00000055664)	ENSCARG00000055690	skic2 (ENSCARG00000055728)	ENSCARG00000055909	ENSCARG00000055928	neu1 (ENSCARG00000055936)	NEU1 (ENSCARG00000055964)	NEU1 (ENSCARG00000055973)	ENSCARG00000055981	ENSCARG00000055993	prrc2a (ENSCARG00000056006)	csnk2b (ENSCARG00000056053)	pdia8 (ENSCARG00000056117)
Cyprininae	ANCESTRAL SPECIES	273	ENSGT00390000015121	ENSGT00940000154416.C.c.b.f.a	ENSGT00390000008276.e.b	ENSGT00940000154416.C.c.b.e	ENSGT00390000008276.e.a.b	ENSGT00970000193610.a	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a.c.b	ENSGT00530000063632.B.a.c.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159.m	ENSGT00390000014159.n	ENSGT00390000018500.a.c.h	ENSGT00940000157642.h.j #22	ENSGT01060000248544.a.b.b.b.a	ENSGT00940000155579.b.f	ENSGT00940000162418.a.b	ENSGT00940000162418.b	ENSGT00630000089917.i	ENSGT00940000158255.b	ENSGT00940000162382.n	ENSGT00390000011559.c	ENSGT00950000182944.D.o.a	ENSGT00950000182944.D.p.b	ENSGT00950000183161.a.a.d	ENSGT00390000003781.e.a.n	ENSGT00940000164105.b.e	ENSGT00940000163472.i.a.b.b.a.a.b.b.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00390000014184.j
Cyprininae_a	ANCESTRAL SPECIES	387														ENSGT00390000014159.n	ENSGT00390000018500.a.c.h	ENSGT00940000157642.h.j #22	ENSGT00940000155579.b.f	ENSGT00940000162418.a.b	ENSGT00940000162418.b	ENSGT00630000089917.i	ENSGT00940000158255.b	ENSGT00390000011559.c	ENSGT00950000182944.D.o.a	ENSGT00950000182944.D.p.b	ENSGT00950000183161.a.a.d	ENSGT00390000003781.e.a.n	ENSGT00940000166438	ENSGT00940000164105.b.e	ENSGT00940000163472.i.a.b.b.a.a.b.b.b.a.a.a.b.b.a.a.a.a.a.b	ENSGT00390000014184.j	ENSGT00940000156985.h.j
Common carp reference	MODERN SPECIES	12	ENSCCRG00000061581	UBE2QL1 (ENSCCRG00000082061)	nsun2 (ENSCCRG00000054248)	srd5a1 (ENSCCRG00000003990)	TENT4A (ENSCCRG00000003948)	adcy2b (ENSCCRG00000066159)	CFAP90 (ENSCCRG00000044510)	ENSCCRG00000044516	ENSCCRG00000064157	ENSCCRG00000044587	ppp1r11 (ENSCCRG00000044591) #16	vars2 (ENSCCRG00000071995)	mgat1b (ENSCCRG00000042880)	gtf2h4 (ENSCCRG00000042922)	ENSCCRG00000056326	ENSCCRG00000040672 #22	ENSCCRG00000067828	tnfa (ENSCCRG00000040666)	sacm1la (ENSCCRG00000005120)	zbtb12.2 (ENSCCRG00000013639)	nelfe (ENSCCRG00000013642)	skic2 (ENSCCRG00000013648)	ENSCCRG00000009271	neu1 (ENSCCRG00000009275)	ENSCCRG00000041421	prrc2a (ENSCCRG00000056887)	csnk2b (ENSCCRG00000074499)	pdia8 (ENSCCRG00000003319)	ENSCCRG00000046022	ENSCCRG00000054375	ints3 (ENSCCRG00000003855)
Golden-line barbel	MODERN SPECIES	57	irx1b (ENSSGRG00000022979)	med10 (ENSSGRG00000022980)	UBE2QL1 (ENSSGRG00000022984)	nsun2 (ENSSGRG00000022986)	srd5a1 (ENSSGRG00000022987)	adcy2b (ENSSGRG00000023003)	CFAP90 (ENSSGRG00000023059)	ENSSGRG00000023060	ENSSGRG00000023061	ENSSGRG00000023066	ppp1r11 (ENSSGRG00000023069) #16	vars2 (ENSSGRG00000023072)	ddx39b (ENSSGRG00000023076)	gtf2h4 (ENSSGRG00000023326)	SH3BP5L (ENSSGRG00000023335)	ENSSGRG00000023347 #22	sacm1la (ENSSGRG00000024361)	zbtb12.2 (ENSSGRG00000024738)	ENSSGRG00000024739	nelfe (ENSSGRG00000024740)	ENSSGRG00000024745	PRRT1 (ENSSGRG00000024746)	neu1 (ENSSGRG00000024749)	ENSSGRG00000024752	prrc2a (ENSSGRG00000024755)	csnk2b (ENSSGRG00000024772)	pdia8 (ENSSGRG00000024826)	ints3 (ENSSGRG00000025103)	ENSSGRG00000025153	mylipa (ENSSGRG00000025154)	ENSSGRG00000025155
Goldfish	MODERN SPECIES	10	UBE2QL1 (ENSCARG00000050069)	nsun2 (ENSCARG00000044647)	srd5a1 (ENSCARG00000044452)	TENT4A (ENSCARG00000044253)	adcy2b (ENSCARG00000043214)	CFAP90 (ENSCARG00000043093)	ENSCARG00000043061	ENSCARG00000043029	ENSCARG00000042999	ppp1r11 (ENSCARG00000042986) #16	vars2 (ENSCARG00000042590)	mgat1b (ENSCARG00000042520)	polr1h (ENSCARG00000042456) #17	gtf2h4 (ENSCARG00000042211)	SH3BP5L (ENSCARG00000042099)	GABBR1 (ENSCARG00000038566) #22	tnfa (ENSCARG00000038434)	sacm1la (ENSCARG00000036414)	zbtb12.2 (ENSCARG00000036368)	nelfe (ENSCARG00000036317)	skic2 (ENSCARG00000034564)	ENSCARG00000034460	ENSCARG00000034449	neu1 (ENSCARG00000034417)	NEU1 (ENSCARG00000034327)	prrc2a (ENSCARG00000033994)	csnk2b (ENSCARG00000033880)	ENSCARG00000033040	ENSCARG00000033008	ints3 (ENSCARG00000032720)	ENSCARG00000032689
Zebrafish	MODERN SPECIES	10	si:dkeyp-46h3.2 (ENSDARG00000092498)	ENSDARG00000092887	ENSDARG00000089515	ENSDARG00000087363	ENSDARG00000093704	ENSDARG00000079705	atat1 (ENSDARG00000004472)	ENSDARG00000091932	ppp1r11 (ENSDARG00000036063) #16	vars2 (ENSDARG00000056717)	mgat1b (ENSDARG00000036065)	ddx39b (ENSDARG00000036069)	polr1h (ENSDARG00000036070) #17	gtf2h4 (ENSDARG00000036071)	SH3BP5L (ENSDARG00000007136)	ENSDARG00000016667 #22	tnfa (ENSDARG00000009511)	sacm1la (ENSDARG00000015290)	zbtb12.2 (ENSDARG00000070658)	ENSDARG00000103949	nelfe (ENSDARG00000004343)	skic2 (ENSDARG00000062206)	ENSDARG00000062208	ENSDARG00000087611	neu1 (ENSDARG00000008832)	prrc2a (ENSDARG00000031494)	csnk2b (ENSDARG00000077776)	pdia8 (ENSDARG00000033599)	ENSDARG00000056847	ints3 (ENSDARG00000016811)	npr1a (ENSDARG00000031751)
Clupeiformes	ANCESTRAL SPECIES	116							ENSGT00970000193610	ENSGT00390000001153 #16	ENSGT00940000159890	ENSGT00530000063632.B.a	ENSGT00940000160110	ENSGT00390000008126 #17	ENSGT00390000014159.p	ENSGT00390000018500.a.c	ENSGT00930000152259	ENSGT00940000157642.h #22	ENSGT01060000248544.a.b.b.b	ENSGT00390000008276	ENSGT00940000154416.C.c.b	ENSGT00390000016199.b	ENSGT00390000008658	ENSGT00940000158329	ENSGT00390000010554	ENSGT00940000159263	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000157010.n	ENSGT00940000154641.B.a.e	ENSGT00940000155718.b	ENSGT01050000244950.a.b	ENSGT00940000158303	ENSGT00940000161371
Atlantic herring	MODERN SPECIES	10	kat2b (ENSCHAG00000015861)	rab5aa (ENSCHAG00000016078)	KCNH8 (ENSCHAG00000016128)	tbc1d5 (ENSCHAG00000016337)	ENSCHAG00000016939	dazl (ENSCHAG00000016954)	ENSCHAG00000016972	oxnad1 (ENSCHAG00000017000)	ENSCHAG00000017009	ENSCHAG00000017052	polr1h (ENSCHAG00000017073) #17	ddx39b (ENSCHAG00000017091)	mgat1b (ENSCHAG00000017409)	gtf2h4 (ENSCHAG00000017497)	SH3BP5L (ENSCHAG00000017638)	ENSCHAG00000017687 #22	tnfa (ENSCHAG00000019362)	atat1 (ENSCHAG00000019370)	ENSCHAG00000019398	bag6l (ENSCHAG00000019410)	tk1 (ENSCHAG00000019543)	ENSCHAG00000019559	tpm3 (ENSCHAG00000019585)	arhgef1a (ENSCHAG00000020039)	ENSCHAG00000020518	ENSCHAG00000020556	ssr2 (ENSCHAG00000020588)	mbl2 (ENSCHAG00000020633)	ENSCHAG00000020661	ssr2 (ENSCHAG00000020689)	GRB10 (ENSCHAG00000020733)
Denticle herring	MODERN SPECIES	12	cap1 (ENSDCDG00000024085)	KIAA0319L (ENSDCDG00000024599)	NCDN (ENSDCDG00000025814)	tfap2e (ENSDCDG00000025820)	psmb2 (ENSDCDG00000025825)	ENSDCDG00000023755	ENSDCDG00000023758	ppp1r11 (ENSDCDG00000023759) #16	vars2 (ENSDCDG00000023826)	mgat1b (ENSDCDG00000028409)	ddx39b (ENSDCDG00000028412)	polr1h (ENSDCDG00000028448) #17	gtf2h4 (ENSDCDG00000028453)	SH3BP5L (ENSDCDG00000028681)	ENSDCDG00000028683	GABBR1 (ENSDCDG00000028685) #22	ENSDCDG00000028694	tnfa (ENSDCDG00000028695)	sacm1la (ENSDCDG00000028712)	atat1 (ENSDCDG00000028775)	ENSDCDG00000028777	bag6l (ENSDCDG00000028782)	si:ch211-215a10.4 (ENSDCDG00000028803)	abcf1 (ENSDCDG00000028832)	mrps18b (ENSDCDG00000029889)	ppp1r10 (ENSDCDG00000029896)	tspan13b (ENSDCDG00000029910)	agr2 (ENSDCDG00000029912)	ENSDCDG00000029917	khdrbs1b (ENSDCDG00000029920)	ENSDCDG00000029924
Reedfish	MODERN SPECIES		ENSECRG00000000383	ENSECRG00000000382	ENSECRG00000000381	ENSECRG00000000380	ENSECRG00000000379	ENSECRG00000000378	mgat1b (ENSECRG00000000377)	vars2 (ENSECRG00000000376)	ENSECRG00000000375	polr1h (ENSECRG00000000374) #17	ppp1r11 (ENSECRG00000000373) #16	gtf2h4 (ENSECRG00000000372)	sh3bp5la (ENSECRG00000000371)	ilrun (ENSECRG00000000370)	ENSECRG00000000369	GABBR1 (ENSECRG00000000368) #22	ENSECRG00000000367	ENSECRG00000000366	ATP6V1G2 (ENSECRG00000000365)	neu1 (ENSECRG00000000364)	ENSECRG00000000363	ENSECRG00000000362	ENSECRG00000000361	ENSECRG00000000360	ENSECRG00000000359	bag6l (ENSECRG00000000358)	ENSECRG00000000357	ptges (ENSECRG00000000356)	ENSECRG00000000355	ENSECRG00000000354	ENSECRG00000000353
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	2621															ENSCMIG00000002894 #22	ENSCMIG00000002899 #22	ENSCMIG00000002909
Elephant shark	MODERN SPECIES	2621																ENSCMIG00000002894 #22	ENSCMIG00000002899 #22	ENSCMIG00000002909
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000157642.i #22
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	1367																ENSPMAG00000009364 #22
Lamprey	MODERN SPECIES	580																ENSPMAG00000002086 #22	ENSPMAG00000002088	ENSPMAG00000002106
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000157642.j #22
Lamprey	MODERN SPECIES	2520																ENSPMAG00000006844 #22	ENSPMAG00000006841
Hagfish	MODERN SPECIES	90	got2b (ENSEBUG00000005634)	ENSEBUG00000004711	cog4 (ENSEBUG00000013243)	ENSEBUG00000012297	ENSEBUG00000015900	ENSEBUG00000011290	ENSEBUG00000013697	ELMO1 (ENSEBUG00000012797)	ENSEBUG00000008055	ENSEBUG00000016419	cnot10 (ENSEBUG00000014450)	ENSEBUG00000014407	ENSEBUG00000010892	ENSEBUG00000006208	aars1 (ENSEBUG00000004521)	GABBR1 (ENSEBUG00000003960) #22	ENSEBUG00000009043