Mus	ANCESTRAL SPECIES	4	ENSGT00950000182942.b.a.a	ENSGT00950000182942.b.b	ENSGT00940000157165 #7	ENSGT00390000009677 #8	ENSGT00940000154222.d.b.d.b #9	ENSGT00390000017671.a #10	ENSGT00940000158741 #11	ENSGT00530000063023.B.o.b #13	ENSGT00530000063023.B.o.a #14	ENSGT00940000155094 #15	ENSGT00940000156485 #16	ENSGT00390000000803 #17	ENSGT00940000162896 #19	ENSGT00390000004417.a #20	ENSGT00390000008749.e #21	ENSGT00940000153505.a.a.c.a.a.a.b.a.b #22	ENSGT00940000153505.a.a.c.a.a.a.a.b #23	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.a #24	ENSGT00940000164244.a #25	ENSGT00610000087446 #26	ENSGT00390000016735 #27	ENSGT00390000000053 #28	ENSGT00940000159680 #29	ENSGT00390000005147 #30	ENSGT00940000160257 #31	ENSGT00940000160389 #32	ENSGT00510000047770.c.a #33	ENSGT00940000153116.C.b #34	ENSGT00940000161935 #35	ENSGT00940000160315 #36	ENSGT00390000007170
Mus_A	ANCESTRAL SPECIES	4	ENSGT00950000182942.b.b	ENSGT00940000157165 #7	ENSGT00390000009677 #8	ENSGT00940000154222.d.b.d.b #9	ENSGT00390000017671.a #10	ENSGT00940000158741 #11	ENSGT00390000016779.b.a.b #12	ENSGT00530000063023.B.o.b #13	ENSGT00530000063023.B.o.a #14	ENSGT00940000155094 #15	ENSGT00940000156485 #16	ENSGT00390000000803 #17	ENSGT00940000162896 #19	ENSGT00390000004417.a #20	ENSGT00390000008749.e #21	ENSGT00940000153505.a.a.c.a.a.a.b.a.b #22	ENSGT00940000153505.a.a.c.a.a.a.a.b #23	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.a #24	ENSGT00940000164244.a #25	ENSGT00610000087446 #26	ENSGT00390000016735 #27	ENSGT00390000000053.i #28	ENSGT00940000159680 #29	ENSGT00390000005147 #30	ENSGT00940000160257 #31	ENSGT00940000160389 #32	ENSGT00510000047770.c.a #33	ENSGT00940000153116.C.b #34	ENSGT00940000161935 #35	ENSGT00940000160315 #36	ENSGT00390000007170
Mus_B	ANCESTRAL SPECIES	3	ENSGT00950000182942.b.b	ENSGT00940000157165 #7	ENSGT00390000009677 #8	ENSGT00940000154222.d.b.d.b #9	ENSGT00390000017671.a #10	ENSGT00940000158741 #11	ENSGT00390000016779.b.a.b #12	ENSGT00530000063023.B.o.b #13	ENSGT00530000063023.B.o.a #14	ENSGT00940000155094 #15	ENSGT00940000156485 #16	ENSGT00390000000803 #17	ENSGT00940000162896 #19	ENSGT00390000004417.a #20	ENSGT00390000008749.e #21	ENSGT00940000153505.a.a.c.a.a.a.b.a.b #22	ENSGT00940000153505.a.a.c.a.a.a.a.b #23	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.a #24	ENSGT00940000164244.a #25	ENSGT00610000087446 #26	ENSGT00390000016735 #27	ENSGT00390000000053.i #28	ENSGT00940000159680 #29	ENSGT00390000005147 #30	ENSGT00940000160257 #31	ENSGT00940000160389 #32	ENSGT00510000047770.c.a #33	ENSGT00940000153116.C.b #34	ENSGT00940000161935 #35	ENSGT00940000160315 #36	ENSGT00390000007170
Mus_C	ANCESTRAL SPECIES	8	ENSGT00950000182942.b.b	ENSGT00940000157165 #7	ENSGT00390000009677 #8	ENSGT00940000154222.d.b.d.b #9	ENSGT00390000017671.a #10	ENSGT00940000158741 #11	ENSGT00390000016779.b.a.b #12	ENSGT00530000063023.B.o.b #13	ENSGT00530000063023.B.o.a #14	ENSGT00940000155094 #15	ENSGT00940000156485 #16	ENSGT00390000000803 #17	ENSGT00940000162896 #19	ENSGT00390000004417.a #20	ENSGT00390000008749.e #21	ENSGT00940000153505.a.a.c.a.a.a.b.a.b #22	ENSGT00940000153505.a.a.c.a.a.a.a.b #23	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.a #24	ENSGT00940000164244.a #25	ENSGT00610000087446 #26	ENSGT00390000016735 #27	ENSGT00390000000053.i #28	ENSGT00940000159680 #29	ENSGT00390000005147 #30	ENSGT00940000160257 #31	ENSGT00940000160389 #32	ENSGT00510000047770.c.a #33	ENSGT00940000153116.C.b #34	ENSGT00940000161935 #35	ENSGT00940000160315 #36	ENSGT00390000007170
spretus	MODERN SPECIES	18	B3gat1 (MGP_SPRETEiJ_G0033042) #7	Eepd1 (MGP_SPRETEiJ_G0033041) #8	Septin7 (MGP_SPRETEiJ_G0033040) #9	Herpud2 (MGP_SPRETEiJ_G0033039) #10	Tbx20 (MGP_SPRETEiJ_G0033038) #11	Cypt4 (MGP_SPRETEiJ_G0033037) #12	Dpy19l2 (MGP_SPRETEiJ_G0033036) #13	Dpy19l1 (MGP_SPRETEiJ_G0033035) #14	Npsr1 (MGP_SPRETEiJ_G0033034) #15	Bmper (MGP_SPRETEiJ_G0033033) #16	Bbs9 (MGP_SPRETEiJ_G0033032) #17	MGP_SPRETEiJ_G0033031 #18	Rp9 (MGP_SPRETEiJ_G0033030) #19	9530077C05Rik (MGP_SPRETEiJ_G0033029) #20	Anln (MGP_SPRETEiJ_G0033028) #21	Zfp810 (MGP_SPRETEiJ_G0033027) #22	Zfp599 (MGP_SPRETEiJ_G0033026) #23	Zfp809 (MGP_SPRETEiJ_G0033025) #24	MGP_SPRETEiJ_G0033024 #25	Pigyl (MGP_SPRETEiJ_G0033023) #26	Acp5 (MGP_SPRETEiJ_G0033022) #27	Elof1 (MGP_SPRETEiJ_G0033021) #28	Cnn1 (MGP_SPRETEiJ_G0033020) #29	Ecsit (MGP_SPRETEiJ_G0033019) #30	Zfp653 (MGP_SPRETEiJ_G0033018) #31	MGP_SPRETEiJ_G0033017 #32	Prkcsh (MGP_SPRETEiJ_G0033016) #33	Odad3 (MGP_SPRETEiJ_G0033015) #34	Rgl3 (MGP_SPRETEiJ_G0033014) #35	Epor (MGP_SPRETEiJ_G0033013) #36	Plppr2 (MGP_SPRETEiJ_G0033012) #37
Steppe mouse	MODERN SPECIES	3067										Bmper (ENSMSIG00000025060) #16	Bbs9 (ENSMSIG00000024757) #17	Rp9 (ENSMSIG00000024723) #19	ENSMSIG00000024696 #20	Anln (ENSMSIG00000024620) #21	ENSMSIG00000024615	Zfp810 (ENSMSIG00000024582) #22	ENSMSIG00000024574	Zfp599 (ENSMSIG00000024565) #23	Zfp809 (ENSMSIG00000024525) #24	ENSMSIG00000024520	ENSMSIG00000024509	Zfp872 (ENSMSIG00000024500) #25	ENSMSIG00000024490	Pigyl (ENSMSIG00000024448) #26
Mouse	MODERN SPECIES	18	Glb1l2 (ENSMUSG00000036395)	B3gat1 (ENSMUSG00000045994) #7	Eepd1 (ENSMUSG00000036611) #8	Septin7 (ENSMUSG00000001833) #9	Herpud2 (ENSMUSG00000008429) #10	Tbx20 (ENSMUSG00000031965) #11	Cypt4 (ENSMUSG00000047995) #12	Dpy19l2 (ENSMUSG00000085576) #13	Dpy19l1 (ENSMUSG00000043067) #14	Npsr1 (ENSMUSG00000043659) #15	Bmper (ENSMUSG00000031963) #16	Bbs9 (ENSMUSG00000035919) #17	9530077C05Rik (ENSMUSG00000036411) #20	Rp9 (ENSMUSG00000032239) #19	Anln (ENSMUSG00000036777) #21	Zfp810 (ENSMUSG00000066829) #22	Zfp599 (ENSMUSG00000062794) #23	Zfp809 (ENSMUSG00000057982) #24	Zfp872 (ENSMUSG00000074472) #25	Pigyl (ENSMUSG00000010607) #26	Acp5 (ENSMUSG00000001348) #27	Elof1 (ENSMUSG00000013822) #28	Cnn1 (ENSMUSG00000001349) #29	Ecsit (ENSMUSG00000066839) #30	Zfp653 (ENSMUSG00000038895) #31	Elavl3 (ENSMUSG00000003410) #32	Prkcsh (ENSMUSG00000003402) #33	Odad3 (ENSMUSG00000039632) #34	Rgl3 (ENSMUSG00000040146) #35	Epor (ENSMUSG00000006235) #36	Swsap1 (ENSMUSG00000051238)
Ryukyu mouse	MODERN SPECIES	18	B3gat1 (MGP_CAROLIEiJ_G0031919) #7	Eepd1 (MGP_CAROLIEiJ_G0031918) #8	Septin7 (MGP_CAROLIEiJ_G0031917) #9	Herpud2 (MGP_CAROLIEiJ_G0031916) #10	Tbx20 (MGP_CAROLIEiJ_G0031915) #11	MGP_CAROLIEiJ_G0031914 #13	Cypt4 (MGP_CAROLIEiJ_G0031913) #12	Dpy19l1 (MGP_CAROLIEiJ_G0031912) #14	Npsr1 (MGP_CAROLIEiJ_G0031911) #15	Bmper (MGP_CAROLIEiJ_G0031910) #16	MGP_CAROLIEiJ_G0031909 #17	MGP_CAROLIEiJ_G0031908	Rp9 (MGP_CAROLIEiJ_G0031907) #19	9530077C05Rik (MGP_CAROLIEiJ_G0031906) #20	MGP_CAROLIEiJ_G0031905 #21	Zfp810 (MGP_CAROLIEiJ_G0031904) #22	Zfp599 (MGP_CAROLIEiJ_G0031903) #23	Zfp809 (MGP_CAROLIEiJ_G0031902) #24	MGP_CAROLIEiJ_G0031901	Pigyl (MGP_CAROLIEiJ_G0031900) #26	Acp5 (MGP_CAROLIEiJ_G0031899) #27	Elof1 (MGP_CAROLIEiJ_G0031898) #28	Cnn1 (MGP_CAROLIEiJ_G0031897) #29	Ecsit (MGP_CAROLIEiJ_G0031896) #30	Zfp653 (MGP_CAROLIEiJ_G0031895) #31	Elavl3 (MGP_CAROLIEiJ_G0031894) #32	Prkcsh (MGP_CAROLIEiJ_G0031893) #33	Odad3 (MGP_CAROLIEiJ_G0031892) #34	Rgl3 (MGP_CAROLIEiJ_G0031891) #35	Epor (MGP_CAROLIEiJ_G0031890) #36	Swsap1 (MGP_CAROLIEiJ_G0031889)
Shrew mouse	MODERN SPECIES	1	Glb1l2 (MGP_PahariEiJ_G0014785)	B3gat1 (MGP_PahariEiJ_G0014784) #7	Eepd1 (MGP_PahariEiJ_G0014783) #8	Septin7 (MGP_PahariEiJ_G0014782) #9	Herpud2 (MGP_PahariEiJ_G0014781) #10	MGP_PahariEiJ_G0014780	Tbx20 (MGP_PahariEiJ_G0014779) #11	Dpy19l2 (MGP_PahariEiJ_G0014778) #13	Dpy19l1 (MGP_PahariEiJ_G0014777) #14	Npsr1 (MGP_PahariEiJ_G0014776) #15	Bmper (MGP_PahariEiJ_G0014775) #16	Bbs9 (MGP_PahariEiJ_G0014774) #17	Rp9 (MGP_PahariEiJ_G0014773) #19	9530077C05Rik (MGP_PahariEiJ_G0014772) #20	Anln (MGP_PahariEiJ_G0014771) #21	Zfp810 (MGP_PahariEiJ_G0014770) #22	Zfp599 (MGP_PahariEiJ_G0014769) #23	Zfp809 (MGP_PahariEiJ_G0014768) #24	MGP_PahariEiJ_G0014767 #25	Pigyl (MGP_PahariEiJ_G0014766) #26	Acp5 (MGP_PahariEiJ_G0014765) #27	Elof1 (MGP_PahariEiJ_G0014764) #28	Cnn1 (MGP_PahariEiJ_G0014763) #29	Ecsit (MGP_PahariEiJ_G0014762) #30	Zfp653 (MGP_PahariEiJ_G0014761) #31	Elavl3 (MGP_PahariEiJ_G0014760) #32	Prkcsh (MGP_PahariEiJ_G0014759) #33	Odad3 (MGP_PahariEiJ_G0014758) #34	Rgl3 (MGP_PahariEiJ_G0014757) #35	Epor (MGP_PahariEiJ_G0014756) #36	Swsap1 (MGP_PahariEiJ_G0014755)