Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000161721	ENSGT00390000008060 #7	ENSGT00940000156523.b #8	ENSGT00940000159142 #9	ENSGT00940000162161.A #10	ENSGT00940000160356.k #11	ENSGT00500000045074 #12	ENSGT00510000049549 #13	ENSGT00940000160480 #14	ENSGT00950000182870.a.a.a.a #15	ENSGT00940000161259.B #16	ENSGT00940000154630.a #17	ENSGT01030000234573.A.b.b.a #18	ENSGT00940000155885 #19	ENSGT00950000183069.b.b.a.a.e.b.b.c #21	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.b #22	ENSGT00940000163952.a.c #23	ENSGT00940000163952.a.d #24	ENSGT00940000153523.b.a #25	ENSGT00950000183216.d.j.b.a #26	ENSGT00940000153523.b.b #27	ENSGT00950000183216.d.j.b.b #28	ENSGT00940000162084 #29	ENSGT00940000159972 #30	ENSGT00390000003207 #31	ENSGT00940000162117 #32	ENSGT00940000162852.a #33	ENSGT01030000234635.a.a.a.b #34	ENSGT00940000158035 #35	ENSGT00940000154227.b #36	ENSGT00390000003874 #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00390000008060 #7	ENSGT00940000156523.b #8	ENSGT00940000159142 #9	ENSGT00940000162161.A #10	ENSGT00940000160356.k #11	ENSGT00500000045074 #12	ENSGT00510000049549 #13	ENSGT00940000160480 #14	ENSGT00950000182870.a.a.a.a #15	ENSGT00940000161259.B #16	ENSGT00940000154630.a #17	ENSGT01030000234573.A.b.b.a #18	ENSGT00940000155885 #19	ENSGT00950000183069.b.b.a.a.e.b.b.d #20	ENSGT00950000183069.b.b.a.a.e.b.b.c.a.b #21	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.b #22	ENSGT00940000163952.a.c #23	ENSGT00940000163952.a.d #24	ENSGT00940000153523.b.a #25	ENSGT00950000183216.d.j.b.a #26	ENSGT00940000153523.b.b #27	ENSGT00950000183216.d.j.b.b #28	ENSGT00940000162084 #29	ENSGT00940000159972 #30	ENSGT00390000003207 #31	ENSGT00940000162117 #32	ENSGT00940000162852.a #33	ENSGT01030000234635.a.a.a.b #34	ENSGT00940000158035 #35	ENSGT00940000154227.b #36	ENSGT00390000003874 #37
Mouse	MODERN SPECIES	1	Bsg (ENSMUSG00000023175) #9	Gzmm (ENSMUSG00000054206) #10	Cdc34 (ENSMUSG00000020307) #11	Tpgs1 (ENSMUSG00000020308) #12	Madcam1 (ENSMUSG00000020310) #13	Odf3l2 (ENSMUSG00000035963) #14	Shc2 (ENSMUSG00000020312) #15	C2cd4c (ENSMUSG00000045912) #16	Theg (ENSMUSG00000020317) #17	Mier2 (ENSMUSG00000042570) #18	Plpp2 (ENSMUSG00000052151) #19	Vmn2r83 (ENSMUSG00000091381) #20	Vmn2r82 (ENSMUSG00000091468) #21	Vmn2r81 (ENSMUSG00000055515) ##21	Vmn2r80 (ENSMUSG00000091888) ##21	2610008E11Rik (ENSMUSG00000060301) #22	Or7a41 (ENSMUSG00000060205) #23	Or7a35 (ENSMUSG00000063216) #24	Or7a36 (ENSMUSG00000046493) #25	Or7a37 (ENSMUSG00000042774) #26	Or7a42 (ENSMUSG00000094080) #27	Or7a38 (ENSMUSG00000094673) #27	Or7a39 (ENSMUSG00000062873) #28	Or7c70 (ENSMUSG00000051190) #29	Slc1a6 (ENSMUSG00000005357) #30	Ccdc105 (ENSMUSG00000078442) #31	Casp14 (ENSMUSG00000005355) #32	Or1i2 (ENSMUSG00000071185) #33	Syde1 (ENSMUSG00000032714) #34	Ilvbl (ENSMUSG00000032763) #35	Or10b1 (ENSMUSG00000107822) #36
Mus_C	ANCESTRAL SPECIES	7	ENSGT00390000008060 #7	ENSGT00940000156523.b #8	ENSGT00940000159142 #9	ENSGT00940000162161.A #10	ENSGT00940000160356.k #11	ENSGT00500000045074 #12	ENSGT00510000049549 #13	ENSGT00940000160480 #14	ENSGT00950000182870.a.a.a.a #15	ENSGT00940000161259.B #16	ENSGT00940000154630.a #17	ENSGT01030000234573.A.b.b.a #18	ENSGT00940000155885 #19	ENSGT00950000183069.b.b.a.a.e.b.b.d #20	ENSGT00950000183069.b.b.a.a.e.b.b.c.a.b #21	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.b #22	ENSGT00940000163952.a.c #23	ENSGT00940000163952.a.d #24	ENSGT00940000153523.b.a #25	ENSGT00950000183216.d.j.b.a #26	ENSGT00940000153523.b.b #27	ENSGT00940000162084 #29	ENSGT00940000159972 #30	ENSGT00390000003207 #31	ENSGT00940000162117 #32	ENSGT00940000162852.a #33	ENSGT01030000234635.a.a.a.b #34	ENSGT00940000158035 #35	ENSGT00940000154227.b #36	ENSGT00390000003874 #37	ENSGT00940000154826
spretus	MODERN SPECIES	1	Bsg (MGP_SPRETEiJ_G0016354) #9	Gzmm (MGP_SPRETEiJ_G0016353) #10	Cdc34 (MGP_SPRETEiJ_G0016352) #11	Tpgs1 (MGP_SPRETEiJ_G0016351) #12	Madcam1 (MGP_SPRETEiJ_G0016350) #13	Odf3l2 (MGP_SPRETEiJ_G0016349) #14	Shc2 (MGP_SPRETEiJ_G0016348) #15	C2cd4c (MGP_SPRETEiJ_G0016347) #16	Theg (MGP_SPRETEiJ_G0016346) #17	Mier2 (MGP_SPRETEiJ_G0016345) #18	Plpp2 (MGP_SPRETEiJ_G0016344) #19	Vmn2r83 (MGP_SPRETEiJ_G0016343) #20	MGP_SPRETEiJ_G0016342 #21	MGP_SPRETEiJ_G0016341 #21	MGP_SPRETEiJ_G0016340 #21	2610008E11Rik (MGP_SPRETEiJ_G0016339) #22	Or7a41 (MGP_SPRETEiJ_G0016338) #23	MGP_SPRETEiJ_G0016337 #24	Or7a36 (MGP_SPRETEiJ_G0016336) #25	Or7a37 (MGP_SPRETEiJ_G0016335) #26	Or7a39 (MGP_SPRETEiJ_G0016334) #28	MGP_SPRETEiJ_G0016332 #27	MGP_SPRETEiJ_G0016333 #27	Or7c70 (MGP_SPRETEiJ_G0016331) #29	Slc1a6 (MGP_SPRETEiJ_G0016330) #30	Ccdc105 (MGP_SPRETEiJ_G0016329) #31	Casp14 (MGP_SPRETEiJ_G0016328) #32	Or1i2 (MGP_SPRETEiJ_G0016327) #33	Syde1 (MGP_SPRETEiJ_G0016326) #34	Ilvbl (MGP_SPRETEiJ_G0016325) #35	MGP_SPRETEiJ_G0016324
Steppe mouse	MODERN SPECIES	3068	Polrmt (ENSMSIG00000001360) #7	Hcn2 (ENSMSIG00000001317) #8	Bsg (ENSMSIG00000001246) #9	Gzmm (ENSMSIG00000001207) #10	Cdc34 (ENSMSIG00000001145) #11	Tpgs1 (ENSMSIG00000001133) #12	Madcam1 (ENSMSIG00000001087) #13	Odf3l2 (ENSMSIG00000001068) #14	Shc2 (ENSMSIG00000001015) #15	C2cd4c (ENSMSIG00000000990) #16	Theg (ENSMSIG00000000944) #17	Mier2 (ENSMSIG00000000839) #18	Plpp2 (ENSMSIG00000000794) #19	Vmn2r83 (ENSMSIG00000000740) #20	Vmn2r81 (ENSMSIG00000000704) ##21	2610008E11Rik (ENSMSIG00000000653) #22	Or7a41 (ENSMSIG00000000636) #23	Or7a35 (ENSMSIG00000000621) #24	Or7a36 (ENSMSIG00000000611) #25	Or7a37 (ENSMSIG00000000592) #26	ENSMSIG00000000580 #27	Or7c70 (ENSMSIG00000000575) #29	Slc1a6 (ENSMSIG00000000543) #30	Ccdc105 (ENSMSIG00000000509) #31	Casp14 (ENSMSIG00000000458) #32	ENSMSIG00000000436	Or1i2 (ENSMSIG00000000403) #33	Syde1 (ENSMSIG00000000382) #34	Ilvbl (ENSMSIG00000000223) #35	Or10b1 (ENSMSIG00000000154) #36	Pdxk (ENSMSIG00000000114) #37
Ryukyu mouse	MODERN SPECIES	1	Rnf126 (MGP_CAROLIEiJ_G0015540)	MGP_CAROLIEiJ_G0015539	Polrmt (MGP_CAROLIEiJ_G0015538) #7	Hcn2 (MGP_CAROLIEiJ_G0015537) #8	Bsg (MGP_CAROLIEiJ_G0015536) #9	MGP_CAROLIEiJ_G0015535 #10	Cdc34 (MGP_CAROLIEiJ_G0015534) #11	Tpgs1 (MGP_CAROLIEiJ_G0015533) #12	Madcam1 (MGP_CAROLIEiJ_G0015532) #13	Odf3l2 (MGP_CAROLIEiJ_G0015531) #14	Shc2 (MGP_CAROLIEiJ_G0015530) #15	C2cd4c (MGP_CAROLIEiJ_G0015529) #16	Theg (MGP_CAROLIEiJ_G0015528) #17	Mier2 (MGP_CAROLIEiJ_G0015527) #18	Plpp2 (MGP_CAROLIEiJ_G0015526) #19	2610008E11Rik (MGP_CAROLIEiJ_G0015525) #22	Or7a41 (MGP_CAROLIEiJ_G0015524) #23	Or7a35 (MGP_CAROLIEiJ_G0015523) #24	Or7a36 (MGP_CAROLIEiJ_G0015522) #25	Or7a37 (MGP_CAROLIEiJ_G0015521) #26	MGP_CAROLIEiJ_G0015519 #27	Or7a39 (MGP_CAROLIEiJ_G0015520) #28	Or7c70 (MGP_CAROLIEiJ_G0015518) #29	Slc1a6 (MGP_CAROLIEiJ_G0015517) #30	Ccdc105 (MGP_CAROLIEiJ_G0015516) #31	Casp14 (MGP_CAROLIEiJ_G0015515) #32	Or1i2 (MGP_CAROLIEiJ_G0015514) #33	Syde1 (MGP_CAROLIEiJ_G0015513) #34	Ilvbl (MGP_CAROLIEiJ_G0015512) #35	MGP_CAROLIEiJ_G0015511	Pdxk (MGP_CAROLIEiJ_G0015510) #37