Tetrapoda	ANCESTRAL SPECIES	71	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00940000160358	ENSGT00940000166395	ENSGT00940000160599	ENSGT00940000156765	ENSGT00390000009795	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00940000177245	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000161006	ENSGT00940000158785	ENSGT00950000182980.a.b.a.a.a
Amniota	ANCESTRAL SPECIES	8	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Mammalia	ANCESTRAL SPECIES	16	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000167687	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Theria	ANCESTRAL SPECIES	14	ENSGT01040000244584	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Eutheria	ANCESTRAL SPECIES	12	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910
Primates	ANCESTRAL SPECIES	2	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00940000160251.h	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00940000160884 #17	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a	ENSGT00830000128380.q.a	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00940000160251.h	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.i #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.i #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159991.A	ENSGT00940000153883.a.a #33	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a.d	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.i #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159991.A	ENSGT00940000153883.a.a #33	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00390000017443.s.a.a #10	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a.d	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.i #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000153883.a.a #33	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00390000017443.s.a.a #10	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a.d	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.i #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000153883.a.a #33	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Cercopithecinae_d	ANCESTRAL SPECIES	11	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00390000017443.s.a.a #10	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a.d	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.i #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000153883.a.a #33	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Sooty mangabey	MODERN SPECIES	165	ALDH6A1 (ENSCATG00000020482) #7	ENSCATG00000008507 #8	LIN52 (ENSCATG00000030477) #9	ENSCATG00000031234 #10	VSX2 (ENSCATG00000042328) #11	ABCD4 (ENSCATG00000044007) #12	VRTN (ENSCATG00000016010) #13	SYNDIG1L (ENSCATG00000034933) #14	NPC2 (ENSCATG00000034248) #15	ISCA2 (ENSCATG00000039296) #16	LTBP2 (ENSCATG00000037020) #17	AREL1 (ENSCATG00000024599) #18	ENSCATG00000038174 #19	YLPM1 (ENSCATG00000029765) #20	PROX2 (ENSCATG00000005114) #21	DLST (ENSCATG00000021002) #22	RPS6KL1 (ENSCATG00000030155) #23	PGF (ENSCATG00000021773) #24	EIF2B2 (ENSCATG00000044945) #25	MLH3 (ENSCATG00000037886) #26	ENSCATG00000044270 #27	ZC2HC1C (ENSCATG00000039242) #28	NEK9 (ENSCATG00000037694) #29	TMED10 (ENSCATG00000031220) #30	FOS (ENSCATG00000044925) #31	JDP2 (ENSCATG00000041724) #32	ENSCATG00000031624 #33	BATF (ENSCATG00000032310) #34	FLVCR2 (ENSCATG00000001690) #35	ERG28 (ENSCATG00000027251) #36	TTLL5 (ENSCATG00000039057) #37
Drill	MODERN SPECIES	827	ENSMLEG00000040250 #8	ALDH6A1 (ENSMLEG00000041110) #7	LIN52 (ENSMLEG00000032006) #9	VSX2 (ENSMLEG00000003115) #11	ABCD4 (ENSMLEG00000041560) #12	VRTN (ENSMLEG00000011469) #13	SYNDIG1L (ENSMLEG00000034438) #14	NPC2 (ENSMLEG00000043459) #15	ISCA2 (ENSMLEG00000031882) #16	LTBP2 (ENSMLEG00000036452) #17	AREL1 (ENSMLEG00000017085) #18	ENSMLEG00000043413 ##19	YLPM1 (ENSMLEG00000041226) #20	PROX2 (ENSMLEG00000044172) #21	ENSMLEG00000031552	DLST (ENSMLEG00000037511) #22	RPS6KL1 (ENSMLEG00000037049) #23	PGF (ENSMLEG00000028938) #24	EIF2B2 (ENSMLEG00000041601) #25	MLH3 (ENSMLEG00000009239) #26	ENSMLEG00000033619 #27	ZC2HC1C (ENSMLEG00000040598) #28	NEK9 (ENSMLEG00000038474) #29	TMED10 (ENSMLEG00000038447) #30	FOS (ENSMLEG00000040559) #31	JDP2 (ENSMLEG00000038051) #32	ENSMLEG00000041625 #33	BATF (ENSMLEG00000033193) #34	FLVCR2 (ENSMLEG00000042003) #35	ERG28 (ENSMLEG00000034213) #36	TTLL5 (ENSMLEG00000033082) #37
Olive baboon	MODERN SPECIES	17	ALDH6A1 (ENSPANG00000000641) #7	LIN52 (ENSPANG00000000642) #9	ENSPANG00000038524 #10	VSX2 (ENSPANG00000012707) #11	ENSPANG00000042755 #12	ABCD4 (ENSPANG00000007033) #12	VRTN (ENSPANG00000012341) #13	SYNDIG1L (ENSPANG00000001022) #14	NPC2 (ENSPANG00000013438) #15	ISCA2 (ENSPANG00000006983) #16	LTBP2 (ENSPANG00000012340) #17	AREL1 (ENSPANG00000018774) #18	FCF1 (ENSPANG00000013437) #19	YLPM1 (ENSPANG00000006982) #20	PROX2 (ENSPANG00000024084) #21	DLST (ENSPANG00000024086) #22	RPS6KL1 (ENSPANG00000016739) #23	PGF (ENSPANG00000017556) #24	EIF2B2 (ENSPANG00000006825) #25	MLH3 (ENSPANG00000016738) #26	ENSPANG00000006824 #27	ZC2HC1C (ENSPANG00000045711) #28	NEK9 (ENSPANG00000006981) #29	TMED10 (ENSPANG00000019635) #30	FOS (ENSPANG00000020551) #31	JDP2 (ENSPANG00000019986) #32	BATF (ENSPANG00000021772) #34	ERG28 (ENSPANG00000022559) #36	FLVCR2 (ENSPANG00000017555) #35	ENSPANG00000030981	TTLL5 (ENSPANG00000021771) #37
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00390000017443.s.a.a #10	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a.d	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.i #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000153883.a.a #33	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00390000017443.s.a.a #10	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT01100000263539.b.a.a.a.b.b.a.b.a.a.a.b.a.a.b.a.a	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.i #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000167556.b.b.a.b.a.a.a.b.a.b.a.a.a.a	ENSGT00940000159276 #31	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36
Rhesus	MODERN SPECIES	17	COQ6 (ENSMMUG00000011148)	BBOF1 (ENSMMUG00000012683)	ALDH6A1 (ENSMMUG00000012684) #7	LIN52 (ENSMMUG00000052506) #9	VSX2 (ENSMMUG00000029272) #11	ABCD4 (ENSMMUG00000004041) #12	VRTN (ENSMMUG00000012383) #13	SYNDIG1L (ENSMMUG00000038996) #14	NPC2 (ENSMMUG00000006563) #15	ISCA2 (ENSMMUG00000050430) #16	LTBP2 (ENSMMUG00000018015) #17	FCF1 (ENSMMUG00000008887) #19	ENSMMUG00000056376	YLPM1 (ENSMMUG00000004255) #20	PROX2 (ENSMMUG00000004259) #21	DLST (ENSMMUG00000004260) #22	RPS6KL1 (ENSMMUG00000004263) #23	PGF (ENSMMUG00000002909) #24	EIF2B2 (ENSMMUG00000002910) #25	MLH3 (ENSMMUG00000002911) #26	ZC2HC1C (ENSMMUG00000015165) #28	NEK9 (ENSMMUG00000015166) #29	TMED10 (ENSMMUG00000015168) #30	ENSMMUG00000052002	FOS (ENSMMUG00000040100) #31	ENSMMUG00000052410	JDP2 (ENSMMUG00000002797) #32	BATF (ENSMMUG00000003834) #34	FLVCR2 (ENSMMUG00000017665) #35	ERG28 (ENSMMUG00000012064) #36	TTLL5 (ENSMMUG00000012065) #37
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000058590 #10	VSX2 (ENSMFAG00000050163) #11	ENSMFAG00000050925	ABCD4 (ENSMFAG00000031273) #12	ENSMFAG00000056780 ##8	VRTN (ENSMFAG00000011666) #13	SYNDIG1L (ENSMFAG00000039919) #14	NPC2 (ENSMFAG00000035734) #15	ISCA2 (ENSMFAG00000049400) #16	LTBP2 (ENSMFAG00000039527) #17	AREL1 (ENSMFAG00000034133) #18	FCF1 (ENSMFAG00000043357) ##19	ENSMFAG00000050358	YLPM1 (ENSMFAG00000034471) #20	PROX2 (ENSMFAG00000032039) #21	DLST (ENSMFAG00000030177) #22	RPS6KL1 (ENSMFAG00000037597) #23	PGF (ENSMFAG00000044494) #24	EIF2B2 (ENSMFAG00000043749) #25	MLH3 (ENSMFAG00000043843) #26	ENSMFAG00000030959 #27	ZC2HC1C (ENSMFAG00000013902) #28	NEK9 (ENSMFAG00000037572) #29	TMED10 (ENSMFAG00000031081) #30	ENSMFAG00000050715	FOS (ENSMFAG00000014606) #31	ENSMFAG00000061921	JDP2 (ENSMFAG00000033637) #32	BATF (ENSMFAG00000031172) #34	FLVCR2 (ENSMFAG00000039606) #35	ENSMFAG00000053687
Pig-tailed macaque	MODERN SPECIES	225	BBOF1 (ENSMNEG00000019451)	ALDH6A1 (ENSMNEG00000030097) #7	LIN52 (ENSMNEG00000044208) #9	VSX2 (ENSMNEG00000041246) #11	ABCD4 (ENSMNEG00000039159) #12	VRTN (ENSMNEG00000001103) #13	SYNDIG1L (ENSMNEG00000028619) #14	NPC2 (ENSMNEG00000040141) #15	ISCA2 (ENSMNEG00000036042) #16	LTBP2 (ENSMNEG00000036133) #17	AREL1 (ENSMNEG00000031507) #18	ENSMNEG00000033468 #19	YLPM1 (ENSMNEG00000036638) #20	PROX2 (ENSMNEG00000034494) #21	ENSMNEG00000037226	DLST (ENSMNEG00000035472) #22	RPS6KL1 (ENSMNEG00000043637) #23	PGF (ENSMNEG00000030055) #24	EIF2B2 (ENSMNEG00000034034) #25	MLH3 (ENSMNEG00000032615) #26	ENSMNEG00000041248 #27	ZC2HC1C (ENSMNEG00000044895) #28	NEK9 (ENSMNEG00000038107) #29	TMED10 (ENSMNEG00000027961) #30	FOS (ENSMNEG00000031655) #31	JDP2 (ENSMNEG00000044862) #32	ENSMNEG00000033927 #33	BATF (ENSMNEG00000028812) #34	ERG28 (ENSMNEG00000004663) #36	FLVCR2 (ENSMNEG00000041899) #35	ENSMNEG00000032194
Vervet Monkey	MODERN SPECIES	16	COQ6 (ENSCSAG00000012631)	ENTPD5 (ENSCSAG00000012613)	BBOF1 (ENSCSAG00000012603)	ALDH6A1 (ENSCSAG00000012592) #7	LIN52 (ENSCSAG00000012576) #9	VSX2 (ENSCSAG00000012566) #11	ABCD4 (ENSCSAG00000012543) #12	VRTN (ENSCSAG00000019573) #13	SYNDIG1L (ENSCSAG00000012533) #14	NPC2 (ENSCSAG00000012527) #15	ISCA2 (ENSCSAG00000012521) #16	LTBP2 (ENSCSAG00000012456) #17	AREL1 (ENSCSAG00000012298) #18	YLPM1 (ENSCSAG00000012291) #20	PROX2 (ENSCSAG00000012283) #21	DLST (ENSCSAG00000012278) #22	RPS6KL1 (ENSCSAG00000012263) #23	PGF (ENSCSAG00000012223) #24	EIF2B2 (ENSCSAG00000012187) #25	MLH3 (ENSCSAG00000012181) #26	ENSCSAG00000012173 #27	ZC2HC1C (ENSCSAG00000012169) #28	NEK9 (ENSCSAG00000012158) #29	TMED10 (ENSCSAG00000012147) #30	FOS (ENSCSAG00000012136) #31	JDP2 (ENSCSAG00000012122) #32	BATF (ENSCSAG00000012114) #34	FLVCR2 (ENSCSAG00000012084) #35	ERG28 (ENSCSAG00000012045) #36	TTLL5 (ENSCSAG00000012037) #37	TGFB3 (ENSCSAG00000012003)
Rhinopithecus	ANCESTRAL SPECIES	42	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.i #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000153883.a.a #33	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Golden snub-nosed monkey	MODERN SPECIES	2365	BBOF1 (ENSRROG00000039245)	ALDH6A1 (ENSRROG00000035589) #7	LIN52 (ENSRROG00000038659) #9	VSX2 (ENSRROG00000035399) #11	ABCD4 (ENSRROG00000036607) #12	VRTN (ENSRROG00000010435) #13	SYNDIG1L (ENSRROG00000041128) #14	NPC2 (ENSRROG00000037959) #15	ISCA2 (ENSRROG00000030258) #16	LTBP2 (ENSRROG00000036111) #17	ENSRROG00000045039	AREL1 (ENSRROG00000031099) #18	ENSRROG00000037201 #19	YLPM1 (ENSRROG00000039845) #20	PROX2 (ENSRROG00000033966) #21	DLST (ENSRROG00000045190) #22	RPS6KL1 (ENSRROG00000033229) #23	PGF (ENSRROG00000034324) #24	EIF2B2 (ENSRROG00000042761) #25	MLH3 (ENSRROG00000029699) #26	ENSRROG00000037333 #27	ZC2HC1C (ENSRROG00000045324) #28	NEK9 (ENSRROG00000011665) #29	TMED10 (ENSRROG00000034110) #30	FOS (ENSRROG00000038425) #31	JDP2 (ENSRROG00000000567) #32	ENSRROG00000034062 #33	BATF (ENSRROG00000041232) #34	FLVCR2 (ENSRROG00000042695) #35	ERG28 (ENSRROG00000043806) #36	TTLL5 (ENSRROG00000038675) #37
Black snub-nosed monkey	MODERN SPECIES	656	ENTPD5 (ENSRBIG00000032979)	BBOF1 (ENSRBIG00000031361)	ALDH6A1 (ENSRBIG00000034701) #7	LIN52 (ENSRBIG00000040121) #9	VSX2 (ENSRBIG00000030815) #11	ABCD4 (ENSRBIG00000031434) #12	VRTN (ENSRBIG00000024397) #13	SYNDIG1L (ENSRBIG00000032309) #14	NPC2 (ENSRBIG00000030802) #15	ISCA2 (ENSRBIG00000038871) #16	LTBP2 (ENSRBIG00000029959) #17	AREL1 (ENSRBIG00000042880) #18	ENSRBIG00000035012 #19	YLPM1 (ENSRBIG00000042494) #20	PROX2 (ENSRBIG00000034329) #21	DLST (ENSRBIG00000044815) #22	RPS6KL1 (ENSRBIG00000040806) #23	PGF (ENSRBIG00000031738) #24	EIF2B2 (ENSRBIG00000040243) #25	MLH3 (ENSRBIG00000031546) #26	ENSRBIG00000028316 #27	ZC2HC1C (ENSRBIG00000029182) #28	NEK9 (ENSRBIG00000032887) #29	TMED10 (ENSRBIG00000042626) #30	FOS (ENSRBIG00000036327) #31	JDP2 (ENSRBIG00000030082) #32	ENSRBIG00000036437 #33	BATF (ENSRBIG00000038010) #34	FLVCR2 (ENSRBIG00000038928) #35	ERG28 (ENSRBIG00000029268) #36	TTLL5 (ENSRBIG00000044481) #37
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES																	ENSGT00930000151014.g #22
Hominidae	ANCESTRAL SPECIES																	ENSGT00930000151014.g #22
Orangutan	MODERN SPECIES		GIPC2 (ENSPPYG00000001218)	DNAJB4 (ENSPPYG00000001217)	FUBP1 (ENSPPYG00000001219)	NEXN (ENSPPYG00000001220)	MIGA1 (ENSPPYG00000001221)	USP33 (ENSPPYG00000001222)	ZZZ3 (ENSPPYG00000001223)	AK5 (ENSPPYG00000001224)	PIGK (ENSPPYG00000001225)	ST6GALNAC5 (ENSPPYG00000001226)	ST6GALNAC3 (ENSPPYG00000030574)	ASB17 (ENSPPYG00000001228)	MSH4 (ENSPPYG00000032071)	RABGGTB (ENSPPYG00000001230)	ACADM (ENSPPYG00000001231)	ENSPPYG00000033221 #22	SLC44A5 (ENSPPYG00000001232)	LHX8 (ENSPPYG00000001233)	TYW3 (ENSPPYG00000001234)	CRYZ (ENSPPYG00000001235)	ERICH3 (ENSPPYG00000001236)	FPGT (ENSPPYG00000001237)	LRRC53 (ENSPPYG00000001238)	LRRIQ3 (ENSPPYG00000039895)	NEGR1 (ENSPPYG00000001239)	ZRANB2 (ENSPPYG00000001240)	PTGER3 (ENSPPYG00000001241)	ENSPPYG00000037732	CTH (ENSPPYG00000001242)	ENSPPYG00000001243	ANKRD13C (ENSPPYG00000001244)
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00940000160251.h	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00910000148032	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014.h.a #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.j ##27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Hominidae	ANCESTRAL SPECIES	14	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700.a.b #16	ENSGT00910000148032	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014.h.a #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.j ##27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.a.a.b.b #8	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00940000160251.h	ENSGT00390000005700.a.b #16	ENSGT00910000148032	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014.h.a #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.j ##27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT00390000000153.l.a.cb.i.b.a.a	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Gorilla	MODERN SPECIES	5	ENSGGOG00000022958 #8	ENSGGOG00000038348 #9	VSX2 (ENSGGOG00000002583) #11	ABCD4 (ENSGGOG00000002587) #12	VRTN (ENSGGOG00000000437) #13	SYNDIG1L (ENSGGOG00000008787) #14	ENSGGOG00000012886 #15	ENSGGOG00000036134	ISCA2 (ENSGGOG00000027499) #16	LTBP2 (ENSGGOG00000012899) #17	ENSGGOG00000037625	AREL1 (ENSGGOG00000008612) #18	ENSGGOG00000016318 ##19	YLPM1 (ENSGGOG00000014195) #20	PROX2 (ENSGGOG00000022893) #21	DLST (ENSGGOG00000011591) #22	RPS6KL1 (ENSGGOG00000011607) #23	ENSGGOG00000014737 #24	EIF2B2 (ENSGGOG00000000514) #25	MLH3 (ENSGGOG00000037041) #26	ENSGGOG00000042048 ##27	ZC2HC1C (ENSGGOG00000024326) #28	NEK9 (ENSGGOG00000027555) #29	TMED10 (ENSGGOG00000007453) #30	FOS (ENSGGOG00000000527) #31	JDP2 (ENSGGOG00000043596) #32	BATF (ENSGGOG00000002267) #34	FLVCR2 (ENSGGOG00000009014) #35	ENSGGOG00000036834	ERG28 (ENSGGOG00000006493) #36	TTLL5 (ENSGGOG00000016703) #37
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.a.a.b.b #8	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00940000160251.h	ENSGT00390000005700.a.b #16	ENSGT00910000148032	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014.h.a #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00940000166472	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT00390000000153.l.a.cb.i.b.a.a	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Human	MODERN SPECIES	5	ENTPD5 (ENSG00000187097)	BBOF1 (ENSG00000119636)	ALDH6A1 (ENSG00000119711) #7	LIN52 (ENSG00000205659) #9	VSX2 (ENSG00000119614) #11	ABCD4 (ENSG00000119688) #12	VRTN (ENSG00000133980) #13	SYNDIG1L (ENSG00000183379) #14	NPC2 (ENSG00000119655) #15	ISCA2 (ENSG00000165898) #16	LTBP2 (ENSG00000119681) #17	AREL1 (ENSG00000119682) #18	FCF1 (ENSG00000119616) #19	YLPM1 (ENSG00000119596) #20	PROX2 (ENSG00000119608) #21	DLST (ENSG00000119689) #22	RPS6KL1 (ENSG00000198208) #23	PGF (ENSG00000119630) #24	EIF2B2 (ENSG00000119718) #25	MLH3 (ENSG00000119684) #26	ACYP1 (ENSG00000119640)	ZC2HC1C (ENSG00000119703) #28	NEK9 (ENSG00000119638) #29	TMED10 (ENSG00000170348) #30	FOS (ENSG00000170345) #31	JDP2 (ENSG00000140044) #32	BATF (ENSG00000156127) #34	FLVCR2 (ENSG00000119686) #35	TTLL5 (ENSG00000119685) #37	ERG28 (ENSG00000133935) #36	IFT43 (ENSG00000119650)
Pan	ANCESTRAL SPECIES	8	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.a.a.b.b #8	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00940000160251.h	ENSGT00390000005700.a.b #16	ENSGT00910000148032	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014.h.a #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00940000166472	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT00390000000153.l.a.cb.i.b.a.a	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Chimpanzee	MODERN SPECIES	5	ALDH6A1 (ENSPTRG00000006531) #7	ENSPTRG00000041719 #8	LIN52 (ENSPTRG00000030700) #9	VSX2 (ENSPTRG00000006532) #11	ABCD4 (ENSPTRG00000006533) #12	VRTN (ENSPTRG00000030698) #13	SYNDIG1L (ENSPTRG00000006534) #14	NPC2 (ENSPTRG00000006535) #15	ENSPTRG00000045441	ISCA2 (ENSPTRG00000006536) #16	LTBP2 (ENSPTRG00000006538) #17	AREL1 (ENSPTRG00000006539) #18	FCF1 (ENSPTRG00000006540) ##19	YLPM1 (ENSPTRG00000006541) #20	PROX2 (ENSPTRG00000006542) #21	DLST (ENSPTRG00000006543) #22	RPS6KL1 (ENSPTRG00000024146) #23	PGF (ENSPTRG00000006545) #24	EIF2B2 (ENSPTRG00000006547) #25	MLH3 (ENSPTRG00000006548) #26	ACYP1 (ENSPTRG00000006549)	ZC2HC1C (ENSPTRG00000006550) #28	ENSPTRG00000048259	NEK9 (ENSPTRG00000006551) #29	TMED10 (ENSPTRG00000052822) #30	FOS (ENSPTRG00000047703) #31	JDP2 (ENSPTRG00000006555) #32	BATF (ENSPTRG00000006556) #34	FLVCR2 (ENSPTRG00000006557) #35	ENSPTRG00000045206	ERG28 (ENSPTRG00000006559) #36
Bonobo	MODERN SPECIES	5	ALDH6A1 (ENSPPAG00000030111) #7	LIN52 (ENSPPAG00000029287) #9	ENSPPAG00000028020 #11	ABCD4 (ENSPPAG00000041355) #12	VRTN (ENSPPAG00000016158) #13	SYNDIG1L (ENSPPAG00000038287) #14	ENSPPAG00000039350 #15	ENSPPAG00000040331	ISCA2 (ENSPPAG00000023891) #16	ENSPPAG00000017395	LTBP2 (ENSPPAG00000037513) #17	AREL1 (ENSPPAG00000029208) #18	FCF1 (ENSPPAG00000042313) #19	YLPM1 (ENSPPAG00000013242) #20	PROX2 (ENSPPAG00000043369) #21	DLST (ENSPPAG00000031259) #22	RPS6KL1 (ENSPPAG00000030997) #23	ENSPPAG00000031002 #24	EIF2B2 (ENSPPAG00000031197) #25	MLH3 (ENSPPAG00000043517) #26	ENSPPAG00000027442	ZC2HC1C (ENSPPAG00000032553) #28	NEK9 (ENSPPAG00000017463) #29	TMED10 (ENSPPAG00000032562) #30	FOS (ENSPPAG00000021153) #31	JDP2 (ENSPPAG00000039076) #32	BATF (ENSPPAG00000038433) #34	ENSPPAG00000024550	ENSPPAG00000035673 #35	ERG28 (ENSPPAG00000038048) #36	TTLL5 (ENSPPAG00000041206) #37
Orangutan	MODERN SPECIES	5	ENTPD5 (ENSPPYG00000030358)	BBOF1 (ENSPPYG00000005979)	ALDH6A1 (ENSPPYG00000005980) #7	LIN52 (ENSPPYG00000032254) #9	VSX2 (ENSPPYG00000005982) #11	ABCD4 (ENSPPYG00000005983) #12	VRTN (ENSPPYG00000005985) #13	SYNDIG1L (ENSPPYG00000005986) #14	ENSPPYG00000005987 #15	ISCA2 (ENSPPYG00000005988) #16	LTBP2 (ENSPPYG00000005989) #17	AREL1 (ENSPPYG00000005990) #18	FCF1 (ENSPPYG00000005991) #19	YLPM1 (ENSPPYG00000029595) #20	ENSPPYG00000005992 #21	DLST (ENSPPYG00000005993) #22	RPS6KL1 (ENSPPYG00000005994) #23	ENSPPYG00000005995 #24	EIF2B2 (ENSPPYG00000005996) #25	MLH3 (ENSPPYG00000005997) #26	ENSPPYG00000033140 ##27	ZC2HC1C (ENSPPYG00000005999) #28	NEK9 (ENSPPYG00000006000) #29	TMED10 (ENSPPYG00000029389) #30	FOS (ENSPPYG00000006002) #31	JDP2 (ENSPPYG00000006004) #32	BATF (ENSPPYG00000006005) #34	FLVCR2 (ENSPPYG00000006006) #35	ERG28 (ENSPPYG00000006007) #36	TTLL5 (ENSPPYG00000006008) #37	TGFB3 (ENSPPYG00000006009)
Gibbon	MODERN SPECIES	14	BBOF1 (ENSNLEG00000016175)	ALDH6A1 (ENSNLEG00000016181) #7	LIN52 (ENSNLEG00000016207) #9	VSX2 (ENSNLEG00000016214) #11	ABCD4 (ENSNLEG00000016217) #12	SYNDIG1L (ENSNLEG00000016258) #14	ENSNLEG00000032793	ENSNLEG00000033895 #15	ISCA2 (ENSNLEG00000016268) #16	ENSNLEG00000016269	LTBP2 (ENSNLEG00000016271) #17	AREL1 (ENSNLEG00000016294) #18	ENSNLEG00000016311 ##19	YLPM1 (ENSNLEG00000016312) #20	PROX2 (ENSNLEG00000016325) #21	DLST (ENSNLEG00000016330) #22	RPS6KL1 (ENSNLEG00000016363) #23	ENSNLEG00000016375 #24	EIF2B2 (ENSNLEG00000016383) #25	MLH3 (ENSNLEG00000016412) #26	ENSNLEG00000016441 ##27	ZC2HC1C (ENSNLEG00000016444) #28	NEK9 (ENSNLEG00000016445) #29	TMED10 (ENSNLEG00000030333) #30	FOS (ENSNLEG00000031753) #31	ENSNLEG00000034123	JDP2 (ENSNLEG00000016475) #32	BATF (ENSNLEG00000016492) #34	ERG28 (ENSNLEG00000016519) #36	FLVCR2 (ENSNLEG00000016498) #35	ENSNLEG00000033370
Hominoidea	ANCESTRAL SPECIES																	ENSGT00930000151014.h.b #22
Hominidae	ANCESTRAL SPECIES																	ENSGT00930000151014.h.b #22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000156826	ENSGT00940000160043	ENSGT00730000111176	ENSGT00940000167496	ENSGT00390000008565.b	ENSGT00940000157311	ENSGT00390000005307	ENSGT00940000155917	ENSGT00940000156273	ENSGT00910000147361	ENSGT00940000157634	ENSGT00940000159735	ENSGT00390000018077	ENSGT00550000074897	ENSGT00950000183128.B	ENSGT00930000151014.h.b #22	ENSGT00940000158429	ENSGT00940000156600	ENSGT00940000156200.A	ENSGT00940000153304.C	ENSGT00940000154882.db	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00940000154174.s.a.b	ENSGT00390000000312
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00390000003420.a.b	ENSGT00940000156826	ENSGT00940000160043	ENSGT00730000111176	ENSGT00940000167496	ENSGT00390000008565.b	ENSGT00940000157311	ENSGT00390000005307	ENSGT00940000155917	ENSGT00940000156273	ENSGT00940000157634	ENSGT00940000159735	ENSGT00390000018077	ENSGT00550000074897	ENSGT00950000183128.B	ENSGT00930000151014.h.b #22	ENSGT00940000158429	ENSGT00940000156600	ENSGT00940000156200.A	ENSGT00940000153304.C	ENSGT00940000154882.db	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00410000028138
Pan	ANCESTRAL SPECIES		ENSGT00390000003420.a.b	ENSGT00940000156826	ENSGT00730000111176	ENSGT00940000167496	ENSGT00390000008565.b	ENSGT00940000157311	ENSGT00390000005307	ENSGT00940000155917	ENSGT00940000156273	ENSGT00940000157634	ENSGT00390000013354.d.a.b.c.a	ENSGT00940000159735	ENSGT00390000018077	ENSGT00550000074897	ENSGT00950000183128.B	ENSGT00930000151014.h.b #22	ENSGT00940000158429	ENSGT00940000156600	ENSGT00940000156200.A	ENSGT00940000153304.C	ENSGT00940000154882.db	ENSGT00530000064485	ENSGT00940000161095	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078	ENSGT01030000234559.b	ENSGT00390000000312	ENSGT00410000028138
Chimpanzee	MODERN SPECIES		FUBP1 (ENSPTRG00000000888)	NEXN (ENSPTRG00000000886)	ENSPTRG00000045301	MIGA1 (ENSPTRG00000000884)	USP33 (ENSPTRG00000000882)	ZZZ3 (ENSPTRG00000000881)	AK5 (ENSPTRG00000000880)	ENSPTRG00000050410	PIGK (ENSPTRG00000000878)	ST6GALNAC5 (ENSPTRG00000000877)	ENSPTRG00000041210	ST6GALNAC3 (ENSPTRG00000000875)	ASB17 (ENSPTRG00000000874)	MSH4 (ENSPTRG00000000873)	RABGGTB (ENSPTRG00000032439)	ENSPTRG00000040641 #22	ACADM (ENSPTRG00000000871)	SLC44A5 (ENSPTRG00000000869)	LHX8 (ENSPTRG00000000868)	TYW3 (ENSPTRG00000000867)	CRYZ (ENSPTRG00000000865)	ERICH3 (ENSPTRG00000000863)	LRRC53 (ENSPTRG00000000862)	TNNI3K (ENSPTRG00000000861)	FPGT (ENSPTRG00000040236)	LRRIQ3 (ENSPTRG00000022606)	NEGR1 (ENSPTRG00000000857)	ZRANB2 (ENSPTRG00000000856)	PTGER3 (ENSPTRG00000000855)	CTH (ENSPTRG00000000854)	ENSPTRG00000024173
Bonobo	MODERN SPECIES		DNAJB4 (ENSPPAG00000035241)	ENSPPAG00000038243	NEXN (ENSPPAG00000031451)	MIGA1 (ENSPPAG00000034093)	USP33 (ENSPPAG00000043017)	ZZZ3 (ENSPPAG00000039210)	AK5 (ENSPPAG00000033952)	ENSPPAG00000038452	PIGK (ENSPPAG00000039870)	ST6GALNAC5 (ENSPPAG00000025247)	ENSPPAG00000033182	ST6GALNAC3 (ENSPPAG00000029808)	ASB17 (ENSPPAG00000039777)	MSH4 (ENSPPAG00000036948)	RABGGTB (ENSPPAG00000033708)	ENSPPAG00000002504 #22	ACADM (ENSPPAG00000036005)	ENSPPAG00000027778	SLC44A5 (ENSPPAG00000029429)	LHX8 (ENSPPAG00000036431)	TYW3 (ENSPPAG00000043438)	CRYZ (ENSPPAG00000042710)	ERICH3 (ENSPPAG00000032285)	LRRC53 (ENSPPAG00000031788)	TNNI3K (ENSPPAG00000038571)	LRRIQ3 (ENSPPAG00000037287)	NEGR1 (ENSPPAG00000042748)	ZRANB2 (ENSPPAG00000037049)	PTGER3 (ENSPPAG00000043015)	CTH (ENSPPAG00000030218)	ENSPPAG00000013130
Gorilla	MODERN SPECIES		ENSGGOG00000027554	NEXN (ENSGGOG00000034812)	MIGA1 (ENSGGOG00000017058)	USP33 (ENSGGOG00000007543)	ZZZ3 (ENSGGOG00000009242)	AK5 (ENSGGOG00000014497)	ENSGGOG00000027673	PIGK (ENSGGOG00000009240)	ENSGGOG00000036290	ST6GALNAC5 (ENSGGOG00000005452)	TPI1 (ENSGGOG00000023036)	ST6GALNAC3 (ENSGGOG00000001465)	ASB17 (ENSGGOG00000003221)	MSH4 (ENSGGOG00000044071)	RABGGTB (ENSGGOG00000004675)	ENSGGOG00000024667 #22	ACADM (ENSGGOG00000024342)	ENSGGOG00000038599	SLC44A5 (ENSGGOG00000007029)	LHX8 (ENSGGOG00000026204)	TYW3 (ENSGGOG00000013676)	CRYZ (ENSGGOG00000034854)	ERICH3 (ENSGGOG00000010123)	LRRC53 (ENSGGOG00000011434)	TNNI3K (ENSGGOG00000016503)	FPGT (ENSGGOG00000036582)	LRRIQ3 (ENSGGOG00000025460)	NEGR1 (ENSGGOG00000007438)	ZRANB2 (ENSGGOG00000023501)	PTGER3 (ENSGGOG00000000587)	ENSGGOG00000017176
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b.k #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00940000160251.h.a	ENSGT00390000006223 #15	ENSGT00390000005700.a.a ##16	ENSGT00940000160884 #17	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b.a #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Mas night monkey	MODERN SPECIES	825	BBOF1 (ENSANAG00000023794)	ALDH6A1 (ENSANAG00000027801) #7	LIN52 (ENSANAG00000022775) #9	VSX2 (ENSANAG00000023147) #11	ENSANAG00000022365 #12	SYNDIG1L (ENSANAG00000024522) #14	ENSANAG00000021950	NPC2 (ENSANAG00000035008) #15	ENSANAG00000028498 ##16	LTBP2 (ENSANAG00000036688) #17	ENSANAG00000023213	AREL1 (ENSANAG00000027921) #18	ENSANAG00000026765 ##19	YLPM1 (ENSANAG00000024403) #20	PROX2 (ENSANAG00000038021) #21	DLST (ENSANAG00000035966) #22	RPS6KL1 (ENSANAG00000030516) #23	PGF (ENSANAG00000032847) #24	EIF2B2 (ENSANAG00000025345) #25	MLH3 (ENSANAG00000022727) #26	ENSANAG00000026223 #27	ZC2HC1C (ENSANAG00000026717) #28	NEK9 (ENSANAG00000016195) #29	TMED10 (ENSANAG00000022267) #30	ENSANAG00000019432	FOS (ENSANAG00000029534) #31	JDP2 (ENSANAG00000034209) #32	BATF (ENSANAG00000031689) #34	ERG28 (ENSANAG00000032608) #36	FLVCR2 (ENSANAG00000026869) #35	TTLL5 (ENSANAG00000035139) #37
Cebidae	ANCESTRAL SPECIES	3	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b.k #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00940000160251.h.a	ENSGT00390000005700.a.a ##16	ENSGT00940000160884 #17	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b.a #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b.k #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00940000160251.h.a	ENSGT00390000005700.a.a ##16	ENSGT00940000160884 #17	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.b.a #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00390000000227.g.a	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.bb #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Capuchin	DUPLICATION
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	472															DDHD1 (ENSCCAG00000021731)	ENSCCAG00000022040 #22	FERMT2 (ENSCCAG00000022341)	GNPNAT1 (ENSCCAG00000037420)	STYX (ENSCCAG00000021821)	PSMC6 (ENSCCAG00000032837)	ERO1A (ENSCCAG00000029771)	GPR137C (ENSCCAG00000029697)	TXNDC16 (ENSCCAG00000033371)	ENSCCAG00000031355	PTGER2 (ENSCCAG00000024716)	PTGDR (ENSCCAG00000021439)	ENSCCAG00000035422	NID2 (ENSCCAG00000024531)	RTRAF (ENSCCAG00000032093)	GNG2 (ENSCCAG00000028948)	ENSCCAG00000036892
Capuchin	MODERN SPECIES	54	LIN52 (ENSCCAG00000031296) #9	VSX2 (ENSCCAG00000023324) #11	ENSCCAG00000032477 #12	VRTN (ENSCCAG00000019702) #13	SYNDIG1L (ENSCCAG00000030697) #14	ENSCCAG00000036597	ENSCCAG00000022939 #15	ISCA2 (ENSCCAG00000029795) ##16	LTBP2 (ENSCCAG00000027073) #17	ENSCCAG00000029235	AREL1 (ENSCCAG00000037317) #18	FCF1 (ENSCCAG00000032200) #19	YLPM1 (ENSCCAG00000024788) #20	PROX2 (ENSCCAG00000026255) #21	ENSCCAG00000035622	ENSCCAG00000027520 #22	RPS6KL1 (ENSCCAG00000029866) #23	PGF (ENSCCAG00000019441) #24	EIF2B2 (ENSCCAG00000034957) #25	MLH3 (ENSCCAG00000028660) #26	ENSCCAG00000037698 #27	ZC2HC1C (ENSCCAG00000009576) #28	NEK9 (ENSCCAG00000027751) #29	TMED10 (ENSCCAG00000038051) #30	FOS (ENSCCAG00000025794) #31	JDP2 (ENSCCAG00000029129) #32	BATF (ENSCCAG00000037730) #34	ERG28 (ENSCCAG00000033804) #36	FLVCR2 (ENSCCAG00000022530) #35	ENSCCAG00000029450	TTLL5 (ENSCCAG00000032726) #37
Capuchin	MODERN SPECIES	145	PLEKHN1 (ENSCCAG00000027320)	KLHL17 (ENSCCAG00000035931)	NOC2L (ENSCCAG00000035002)	SAMD11 (ENSCCAG00000033909)	FREM2 (ENSCCAG00000034192)	STOML3 (ENSCCAG00000038074)	PROSER1 (ENSCCAG00000033560)	NHLRC3 (ENSCCAG00000032791)	LHFPL6 (ENSCCAG00000032600)	COG6 (ENSCCAG00000023043)	FOXO1 (ENSCCAG00000036978)	MRPS31 (ENSCCAG00000033771)	SLC25A15 (ENSCCAG00000026532)	ENSCCAG00000036530	ALG11 (ENSCCAG00000035914)	ENSCCAG00000028029 #22	ATP7B (ENSCCAG00000032531)	TMEM272 (ENSCCAG00000020085)	DHRS12 (ENSCCAG00000030268)	WDFY2 (ENSCCAG00000035502)	INTS6 (ENSCCAG00000034071)	SERPINE3 (ENSCCAG00000032156)	FAM124A (ENSCCAG00000025585)
Bolivian squirrel monkey	MODERN SPECIES	52	BBOF1 (ENSSBOG00000032274)	ALDH6A1 (ENSSBOG00000023484) #7	LIN52 (ENSSBOG00000034707) #9	ENSSBOG00000022778	VSX2 (ENSSBOG00000031713) #11	ABCD4 (ENSSBOG00000033353) #12	SYNDIG1L (ENSSBOG00000034851) #14	NPC2 (ENSSBOG00000023280) #15	ENSSBOG00000028294	ENSSBOG00000031449 ##16	LTBP2 (ENSSBOG00000025865) #17	AREL1 (ENSSBOG00000031683) #18	ENSSBOG00000024765 #19	YLPM1 (ENSSBOG00000020052) #20	PROX2 (ENSSBOG00000035644) #21	DLST (ENSSBOG00000020050) #22	RPS6KL1 (ENSSBOG00000021119) #23	PGF (ENSSBOG00000021274) #24	EIF2B2 (ENSSBOG00000009267) #25	MLH3 (ENSSBOG00000018430) #26	ENSSBOG00000030708 #27	ZC2HC1C (ENSSBOG00000022385) #28	NEK9 (ENSSBOG00000021585) #29	TMED10 (ENSSBOG00000023014) #30	ENSSBOG00000022826	FOS (ENSSBOG00000021663) #31	AIF1 (ENSSBOG00000020993)	JDP2 (ENSSBOG00000033222) #32	BATF (ENSSBOG00000034354) #34	ENSSBOG00000006701	FLVCR2 (ENSSBOG00000030433) #35
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	9														PRKAB2 (ENSCJAG00000076520)	FMO5 (ENSCJAG00000056470)	ENSCJAG00000039766 #22	CHD1L (ENSCJAG00000002406)	BCL9 (ENSCJAG00000002384)	ACP6 (ENSCJAG00000002370)	GJA5 (ENSCJAG00000084416)	GJA8 (ENSCJAG00000002367)	ENSCJAG00000002362	PDZK1 (ENSCJAG00000002353)	CD160 (ENSCJAG00000002349)	RNF115 (ENSCJAG00000002332)	POLR3C (ENSCJAG00000002314)	NUDT17 (ENSCJAG00000074938)	PIAS3 (ENSCJAG00000002257)	ANKRD35 (ENSCJAG00000002247)	ENSCJAG00000073435	ITGA10 (ENSCJAG00000002231)
Marmoset	MODERN SPECIES	1	ALDH6A1 (ENSCJAG00000020412) #7	LIN52 (ENSCJAG00000047702) #9	VSX2 (ENSCJAG00000020442) #11	ABCD4 (ENSCJAG00000020446) #12	ENSCJAG00000055155	ENSCJAG00000075451	SYNDIG1L (ENSCJAG00000072523) #14	NPC2 (ENSCJAG00000020476) #15	ENSCJAG00000057253	ENSCJAG00000020479 ##16	LTBP2 (ENSCJAG00000020480) #17	AREL1 (ENSCJAG00000020497) #18	FCF1 (ENSCJAG00000020518) ##19	YLPM1 (ENSCJAG00000020522) #20	PROX2 (ENSCJAG00000020548) #21	DLST (ENSCJAG00000020551) #22	RPS6KL1 (ENSCJAG00000020566) #23	PGF (ENSCJAG00000020572) #24	EIF2B2 (ENSCJAG00000044557) #25	MLH3 (ENSCJAG00000020596) #26	ENSCJAG00000083598 #27	ZC2HC1C (ENSCJAG00000046911) #28	NEK9 (ENSCJAG00000020610) #29	TMED10 (ENSCJAG00000057118) #30	FOS (ENSCJAG00000020633) #31	ENSCJAG00000085859	JDP2 (ENSCJAG00000020645) #32	BATF (ENSCJAG00000081507) #34	FLVCR2 (ENSCJAG00000020653) #35	ERG28 (ENSCJAG00000020659) #36	TTLL5 (ENSCJAG00000020665) #37
Tarsier	MODERN SPECIES	5507														YLPM1 (ENSTSYG00000009612) #20	PROX2 (ENSTSYG00000025782) #21	DLST (ENSTSYG00000007937) #22	RPS6KL1 (ENSTSYG00000037448) #23	PGF (ENSTSYG00000035657) #24	EIF2B2 (ENSTSYG00000034108) #25	MLH3 (ENSTSYG00000000754) #26	ACYP1 (ENSTSYG00000000755) #27	ZC2HC1C (ENSTSYG00000003113) #28	NEK9 (ENSTSYG00000005042) #29	TMED10 (ENSTSYG00000031453) #30	FOS (ENSTSYG00000013658) #31	JDP2 (ENSTSYG00000031315) #32	BATF (ENSTSYG00000005296) #34	ERG28 (ENSTSYG00000035814) #36	FLVCR2 (ENSTSYG00000013562) #35	ENSTSYG00000030978	ENSTSYG00000013572 #37
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Lemuriformes	DUPLICATION
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00930000151014.m #22
Lemuriformes_a	ANCESTRAL SPECIES																	ENSGT00930000151014.m #22
Coquerels sifaka	MODERN SPECIES	236								ENSPCOG00000025488	CABYR (ENSPCOG00000023455)	OSBPL1A (ENSPCOG00000026731)	IMPACT (ENSPCOG00000015567)	ZNF521 (ENSPCOG00000003783)	ENSPCOG00000005637	PSMA8 (ENSPCOG00000016573)	TAF4B (ENSPCOG00000019250)	ENSPCOG00000018213 #22	KCTD1 (ENSPCOG00000028099)	AQP4 (ENSPCOG00000026243)	CHST9 (ENSPCOG00000026106)	CDH2 (ENSPCOG00000014519)	ENSPCOG00000014236	ENSPCOG00000007456
Lemuriformes	ANCESTRAL SPECIES	28	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014.n #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Mouse lemur	MODERN SPECIES	22	ENTPD5 (ENSMICG00000003012)	ENSMICG00000033736	BBOF1 (ENSMICG00000008464)	ALDH6A1 (ENSMICG00000008467) #7	LIN52 (ENSMICG00000008474) #9	VSX2 (ENSMICG00000037778) #11	ABCD4 (ENSMICG00000008482) #12	SYNDIG1L (ENSMICG00000027038) #14	NPC2 (ENSMICG00000006008) #15	ISCA2 (ENSMICG00000043470) #16	LTBP2 (ENSMICG00000006026) #17	AREL1 (ENSMICG00000006054) #18	ENSMICG00000006061 ##19	YLPM1 (ENSMICG00000006067) #20	ENSMICG00000006078 #21	DLST (ENSMICG00000006080) #22	RPS6KL1 (ENSMICG00000006086) #23	PGF (ENSMICG00000006094) #24	EIF2B2 (ENSMICG00000006100) #25	MLH3 (ENSMICG00000037718) #26	ENSMICG00000026687 #27	ZC2HC1C (ENSMICG00000015986) #28	NEK9 (ENSMICG00000015999) #29	TMED10 (ENSMICG00000016016) #30	FOS (ENSMICG00000016026) #31	JDP2 (ENSMICG00000029702) #32	BATF (ENSMICG00000029066) #34	FLVCR2 (ENSMICG00000016055) #35	ERG28 (ENSMICG00000016077) #36	TTLL5 (ENSMICG00000016085) #37	TGFB3 (ENSMICG00000016110)
Lemuriformes_a	ANCESTRAL SPECIES	11	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014.n #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Greater bamboo lemur	MODERN SPECIES	848									ENSPSMG00000015393	ENSPSMG00000015384	ENSPSMG00000015378	TRMT10C (ENSPSMG00000015367)	ENSPSMG00000015360	YLPM1 (ENSPSMG00000015336) #20	PROX2 (ENSPSMG00000015245) #21	DLST (ENSPSMG00000015212) #22	RPS6KL1 (ENSPSMG00000015121) #23	PGF (ENSPSMG00000015095) #24	EIF2B2 (ENSPSMG00000015056) #25	MLH3 (ENSPSMG00000014947) #26	ENSPSMG00000014839 #27	ZC2HC1C (ENSPSMG00000014834) #28	NEK9 (ENSPSMG00000014787) #29	TMED10 (ENSPSMG00000014729) #30	FOS (ENSPSMG00000014692) #31	JDP2 (ENSPSMG00000014639) #32	BATF (ENSPSMG00000014617) #34	ERG28 (ENSPSMG00000014608) #36	FLVCR2 (ENSPSMG00000014586) #35	ENSPSMG00000014531	ZC3H12A (ENSPSMG00000014523)
Coquerels sifaka	MODERN SPECIES	653	COQ6 (ENSPCOG00000023336)	ENTPD5 (ENSPCOG00000019244)	BBOF1 (ENSPCOG00000009977)	ALDH6A1 (ENSPCOG00000023367) #7	LIN52 (ENSPCOG00000002646) #9	VSX2 (ENSPCOG00000020252) #11	ABCD4 (ENSPCOG00000013720) #12	SYNDIG1L (ENSPCOG00000019267) #14	NPC2 (ENSPCOG00000023731) #15	ISCA2 (ENSPCOG00000018511) #16	LTBP2 (ENSPCOG00000026819) #17	AREL1 (ENSPCOG00000025544) #18	FCF1 (ENSPCOG00000012922) ##19	YLPM1 (ENSPCOG00000015405) #20	PROX2 (ENSPCOG00000016556) #21	ENSPCOG00000023446 #22	RPS6KL1 (ENSPCOG00000026169) #23	PGF (ENSPCOG00000016435) #24	EIF2B2 (ENSPCOG00000016320) #25	MLH3 (ENSPCOG00000002921) #26	ACYP1 (ENSPCOG00000028631)	ZC2HC1C (ENSPCOG00000017757) #28	NEK9 (ENSPCOG00000027956) #29	TMED10 (ENSPCOG00000022239) #30	FOS (ENSPCOG00000000082) #31	JDP2 (ENSPCOG00000018857) #32	BATF (ENSPCOG00000025160) #34	FLVCR2 (ENSPCOG00000028565) #35	ERG28 (ENSPCOG00000021093) #36	TTLL5 (ENSPCOG00000023679) #37	TGFB3 (ENSPCOG00000014765)
Bushbaby	MODERN SPECIES	135	COQ6 (ENSOGAG00000006406)	ENTPD5 (ENSOGAG00000006408)	ALDH6A1 (ENSOGAG00000003006) #7	LIN52 (ENSOGAG00000003009) #9	VSX2 (ENSOGAG00000013552) #11	ABCD4 (ENSOGAG00000013557) #12	VRTN (ENSOGAG00000024981) #13	SYNDIG1L (ENSOGAG00000030617) #14	NPC2 (ENSOGAG00000002697) #15	ISCA2 (ENSOGAG00000002698) #16	LTBP2 (ENSOGAG00000002703) #17	AREL1 (ENSOGAG00000002706) #18	ENSOGAG00000002711 #19	YLPM1 (ENSOGAG00000001323) #20	PROX2 (ENSOGAG00000001327) #21	DLST (ENSOGAG00000027931) #22	RPS6KL1 (ENSOGAG00000001332) #23	PGF (ENSOGAG00000008229) #24	EIF2B2 (ENSOGAG00000008234) #25	MLH3 (ENSOGAG00000008240) #26	ENSOGAG00000029028 #27	ZC2HC1C (ENSOGAG00000032675) #28	NEK9 (ENSOGAG00000008245) #29	TMED10 (ENSOGAG00000028272) #30	FOS (ENSOGAG00000032356) #31	JDP2 (ENSOGAG00000024796) #32	BATF (ENSOGAG00000010133) #34	FLVCR2 (ENSOGAG00000010134) #35	ERG28 (ENSOGAG00000009368) #36	TTLL5 (ENSOGAG00000009371) #37	TGFB3 (ENSOGAG00000009386)
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910
Tree shrew	MODERN SPECIES	822																DLST (ENSTBEG00000006475) #22	RPS6KL1 (ENSTBEG00000006769) #23	ENSTBEG00000006937
Glires	ANCESTRAL SPECIES	12	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910
Lagomorpha	ANCESTRAL SPECIES	25	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910
Rabbit	MODERN SPECIES	12	BBOF1 (ENSOCUG00000017487)	ALDH6A1 (ENSOCUG00000025121) #7	LIN52 (ENSOCUG00000017491) #9	VSX2 (ENSOCUG00000017496) #11	ABCD4 (ENSOCUG00000003484) #12	VRTN (ENSOCUG00000027081) #13	SYNDIG1L (ENSOCUG00000015989) #14	ENSOCUG00000035144	NPC2 (ENSOCUG00000014067) #15	ISCA2 (ENSOCUG00000014072) #16	LTBP2 (ENSOCUG00000014077) #17	AREL1 (ENSOCUG00000014107) #18	ENSOCUG00000014120 #19	YLPM1 (ENSOCUG00000008083) #20	PROX2 (ENSOCUG00000021246) #21	DLST (ENSOCUG00000015606) #22	RPS6KL1 (ENSOCUG00000013819) #23	PGF (ENSOCUG00000026354) #24	EIF2B2 (ENSOCUG00000010175) #25	MLH3 (ENSOCUG00000010182) #26	ENSOCUG00000010190 #27	ZC2HC1C (ENSOCUG00000010195) #28	NEK9 (ENSOCUG00000010201) #29	TMED10 (ENSOCUG00000004669) #30	FOS (ENSOCUG00000021506) #31	JDP2 (ENSOCUG00000008466) #32	BATF (ENSOCUG00000026625) #34	ERG28 (ENSOCUG00000016338) #36	FLVCR2 (ENSOCUG00000029538) #35	TTLL5 (ENSOCUG00000011399) #37	TGFB3 (ENSOCUG00000011415)
Pika	MODERN SPECIES	593								NPC2 (ENSOPRG00000011675) #15	ISCA2 (ENSOPRG00000011684) #16	LTBP2 (ENSOPRG00000011689) #17	AREL1 (ENSOPRG00000011748) #18	ENSOPRG00000018844	FCF1 (ENSOPRG00000011766) #19	YLPM1 (ENSOPRG00000011778) #20	PROX2 (ENSOPRG00000011820) #21	DLST (ENSOPRG00000011832) #22	RPS6KL1 (ENSOPRG00000011848) #23	PGF (ENSOPRG00000011869) #24	EIF2B2 (ENSOPRG00000011892) #25	MLH3 (ENSOPRG00000011908) #26	ENSOPRG00000011940 #27	ENSOPRG00000011943 #28	NEK9 (ENSOPRG00000011956) #29	TMED10 (ENSOPRG00000011992) #30	FOS (ENSOPRG00000012005) #31	ENSOPRG00000012017	JDP2 (ENSOPRG00000012032) #32	BATF (ENSOPRG00000012041) #34	FLVCR2 (ENSOPRG00000012046) #35	ERG28 (ENSOPRG00000012066) #36	ENSOPRG00000012071
Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Hystricomorpha	ANCESTRAL SPECIES	33	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00940000154427.A	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Hystricomorpha_b	ANCESTRAL SPECIES	46	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34
Degu	DUPLICATION
Degu	MODERN SPECIES	48	CCDC198 (ENSODEG00000015422)	SLC35F4 (ENSODEG00000014001)	ENSODEG00000014617	ENSODEG00000014244	ENSODEG00000014881	ENSODEG00000014309	ENSODEG00000014880	ENSODEG00000014925	DACT1 (ENSODEG00000014574)	ENSODEG00000015435	DAAM1 (ENSODEG00000014128)	L3HYPDH (ENSODEG00000015887)	JKAMP (ENSODEG00000014669)	ENSODEG00000014803	ENSODEG00000014970	ENSODEG00000020245 #22	ENSODEG00000020257	ENSODEG00000015513	ENSODEG00000014407	KTN1 (ENSODEG00000015972)	ENSODEG00000020182	ENSODEG00000020193	TBPL2 (ENSODEG00000015283)	ATG14 (ENSODEG00000014397)	ENSODEG00000014741	ENSODEG00000014683	TTC9 (ENSODEG00000015092)	ENSODEG00000020259	MAP3K9 (ENSODEG00000015307)	PCNX1 (ENSODEG00000015239)	SIPA1L1 (ENSODEG00000014862)
Degu	MODERN SPECIES	48	ENTPD5 (ENSODEG00000015910)	ENSODEG00000015055	ALDH6A1 (ENSODEG00000015807) #7	ENSODEG00000015046 #9	VSX2 (ENSODEG00000015486) #11	ABCD4 (ENSODEG00000015190) #12	VRTN (ENSODEG00000015577) #13	SYNDIG1L (ENSODEG00000015191) #14	NPC2 (ENSODEG00000015454) #15	ENSODEG00000015593 #16	LTBP2 (ENSODEG00000015966) #17	AREL1 (ENSODEG00000015900) #18	ENSODEG00000015318 #19	YLPM1 (ENSODEG00000015362) #20	PROX2 (ENSODEG00000015273) #21	ENSODEG00000016718 #22	RPS6KL1 (ENSODEG00000015734) #23	ENSODEG00000015442 #25	ENSODEG00000015428 #26	ENSODEG00000015487 #27	ZC2HC1C (ENSODEG00000015376) #28	NEK9 (ENSODEG00000015192) #29	TMED10 (ENSODEG00000015608) #30	FOS (ENSODEG00000015631) #31	ENSODEG00000015265	JDP2 (ENSODEG00000015424) #32	BATF (ENSODEG00000015516) #34
Long-tailed chinchilla	MODERN SPECIES	230	ENTPD5 (ENSCLAG00000003418)	ENSCLAG00000003357	ALDH6A1 (ENSCLAG00000003304) #7	LIN52 (ENSCLAG00000003236) #9	VSX2 (ENSCLAG00000006640) #11	ABCD4 (ENSCLAG00000006557) #12	VRTN (ENSCLAG00000006514) #13	SYNDIG1L (ENSCLAG00000006492) #14	NPC2 (ENSCLAG00000006435) #15	ISCA2 (ENSCLAG00000006410) #16	LTBP2 (ENSCLAG00000005951) #17	AREL1 (ENSCLAG00000005714) #18	FCF1 (ENSCLAG00000005606) #19	YLPM1 (ENSCLAG00000004848) #20	PROX2 (ENSCLAG00000004620) #21	DLST (ENSCLAG00000004328) #22	RPS6KL1 (ENSCLAG00000004091) #23	PGF (ENSCLAG00000003475) #24	EIF2B2 (ENSCLAG00000003404) #25	MLH3 (ENSCLAG00000003183) #26	ENSCLAG00000003079 #27	ZC2HC1C (ENSCLAG00000003052) #28	NEK9 (ENSCLAG00000002894) #29	ENSCLAG00000017571	ENSCLAG00000005287 #30	FOS (ENSCLAG00000005234) #31	JDP2 (ENSCLAG00000005213) #32	BATF (ENSCLAG00000005182) #34
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	20	ENSCPOG00000015588	RNF113A (ENSCPOG00000038517)	ALDH6A1 (ENSCPOG00000000015) #7	LIN52 (ENSCPOG00000003170) #9	VSX2 (ENSCPOG00000003172) #11	ABCD4 (ENSCPOG00000004776) #12	VRTN (ENSCPOG00000038635) #13	SYNDIG1L (ENSCPOG00000012367) #14	NPC2 (ENSCPOG00000001141) #15	ISCA2 (ENSCPOG00000035413) #16	LTBP2 (ENSCPOG00000001143) #17	AREL1 (ENSCPOG00000001146) #18	ENSCPOG00000001149 #19	YLPM1 (ENSCPOG00000027568) #20	PROX2 (ENSCPOG00000009322) #21	ENSCPOG00000009316 #22	RPS6KL1 (ENSCPOG00000011776) #23	PGF (ENSCPOG00000038491) #24	EIF2B2 (ENSCPOG00000008155) #25	MLH3 (ENSCPOG00000024679) #26	ENSCPOG00000036680 #27	ZC2HC1C (ENSCPOG00000003986) #28	NEK9 (ENSCPOG00000003990) #29	TMED10 (ENSCPOG00000004567) #30	FOS (ENSCPOG00000033284) #31	ENSCPOG00000039224	JDP2 (ENSCPOG00000037507) #32	BATF (ENSCPOG00000039637) #34	FLVCR2 (ENSCPOG00000005615) #35	ERG28 (ENSCPOG00000005620) #36	ENSCPOG00000005623
Guinea pig	MODERN SPECIES	45	RALGAPB (ENSCPOG00000014009)	LBP (ENSCPOG00000035746)	ENSCPOG00000031388	KIAA1755 (ENSCPOG00000011907)	TGM2 (ENSCPOG00000011896)	RPRD1B (ENSCPOG00000012751)	TTI1 (ENSCPOG00000012750)	VSTM2L (ENSCPOG00000022727)	CTNNBL1 (ENSCPOG00000010269)	ENSCPOG00000025309	BLCAP (ENSCPOG00000032938)	SRC (ENSCPOG00000011012)	MANBAL (ENSCPOG00000038554)	GHRH (ENSCPOG00000020252)	RPN2 (ENSCPOG00000039305)	ENSCPOG00000025525 #22	MROH8 (ENSCPOG00000001344)	RBL1 (ENSCPOG00000001340)	SAMHD1 (ENSCPOG00000007987)	TLDC2 (ENSCPOG00000039225)	SOGA1 (ENSCPOG00000011453)	DSN1 (ENSCPOG00000011447)	NDRG3 (ENSCPOG00000011441)	SLA2 (ENSCPOG00000011437)	RAB5IF (ENSCPOG00000037783)	TGIF2 (ENSCPOG00000038949)	MYL9 (ENSCPOG00000036032)	DLGAP4 (ENSCPOG00000013418)	AAR2 (ENSCPOG00000012252)	EPB41L1 (ENSCPOG00000012245)	CNBD2 (ENSCPOG00000014556)
Naked mole-rat female	MODERN SPECIES	18	ENSHGLG00000045022	ALDH6A1 (ENSHGLG00000008121) #7	LIN52 (ENSHGLG00000045214) #9	VSX2 (ENSHGLG00000010609) #11	ABCD4 (ENSHGLG00000019040) #12	SYNDIG1L (ENSHGLG00000013920) #14	NPC2 (ENSHGLG00000013107) #15	ISCA2 (ENSHGLG00000049377) #16	LTBP2 (ENSHGLG00000015861) #17	ENSHGLG00000047171	AREL1 (ENSHGLG00000018582) #18	ENSHGLG00000017869 ##19	YLPM1 (ENSHGLG00000018654) #20	ENSHGLG00000046547	PROX2 (ENSHGLG00000011710) #21	DLST (ENSHGLG00000009814) #22	RPS6KL1 (ENSHGLG00000013483) #23	ENSHGLG00000013243	ENSHGLG00000018678 #24	ENSHGLG00000050804	EIF2B2 (ENSHGLG00000016520) #25	MLH3 (ENSHGLG00000015005) #26	ENSHGLG00000040406	ENSHGLG00000014222 #27	ZC2HC1C (ENSHGLG00000012165) #28	ENSHGLG00000011281 #29	TMED10 (ENSHGLG00000009862) #30	Fos (ENSHGLG00000009642) #31	ENSHGLG00000012043	JDP2 (ENSHGLG00000046590) #32	ENSHGLG00000034007
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402.f #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.g #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Eurasian red squirrel	MODERN SPECIES	11	ALDH6A1 (ENSSVLG00005005600) #7	ENSSVLG00005005569	ENSSVLG00005005534 #9	VSX2 (ENSSVLG00005005496) #11	ABCD4 (ENSSVLG00005005450) #12	VRTN (ENSSVLG00005005435) #13	SYNDIG1L (ENSSVLG00005005404) #14	NPC2 (ENSSVLG00005005374) #15	ISCA2 (ENSSVLG00005005331) #16	LTBP2 (ENSSVLG00005023777) #17	ENSSVLG00005023700	AREL1 (ENSSVLG00005023654) #18	FCF1 (ENSSVLG00005023579) #19	YLPM1 (ENSSVLG00005023475) #20	ENSSVLG00005023416 #21	DLST (ENSSVLG00005023360) #22	RPS6KL1 (ENSSVLG00005023325) #23	PGF (ENSSVLG00005023268) #24	EIF2B2 (ENSSVLG00005023236) #25	MLH3 (ENSSVLG00005023158) #26	ENSSVLG00005023086 #27	ZC2HC1C (ENSSVLG00005023028) #28	NEK9 (ENSSVLG00005022971) #29	TMED10 (ENSSVLG00005022941) #30	FOS (ENSSVLG00005022864) #31	JDP2 (ENSSVLG00005022819) #32	BATF (ENSSVLG00005022782) #34	ERG28 (ENSSVLG00005022750) #36	FLVCR2 (ENSSVLG00005022704) #35	TTLL5 (ENSSVLG00005022638) #37	TGFB3 (ENSSVLG00005022514)
Marmotini	ANCESTRAL SPECIES	27	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402.f #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.g #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Alpin marmot	MODERN SPECIES	1	BBOF1 (ENSMMMG00000016213)	ALDH6A1 (ENSMMMG00000016229) #7	LIN52 (ENSMMMG00000016244) #9	VSX2 (ENSMMMG00000016247) #11	ABCD4 (ENSMMMG00000016264) #12	VRTN (ENSMMMG00000016304) #13	SYNDIG1L (ENSMMMG00000016305) #14	NPC2 (ENSMMMG00000016316) #15	ISCA2 (ENSMMMG00000016320) #16	LTBP2 (ENSMMMG00000016333) #17	AREL1 (ENSMMMG00000016543) #18	FCF1 (ENSMMMG00000016553) #19	YLPM1 (ENSMMMG00000016573) #20	ENSMMMG00000018793	PROX2 (ENSMMMG00000018802) #21	DLST (ENSMMMG00000018811) #22	RPS6KL1 (ENSMMMG00000018824) #23	ENSMMMG00000018834 #24	EIF2B2 (ENSMMMG00000018871) #25	MLH3 (ENSMMMG00000018877) #26	ENSMMMG00000018919 #27	ZC2HC1C (ENSMMMG00000018927) #28	NEK9 (ENSMMMG00000018929) #29	TMED10 (ENSMMMG00000018955) #30	FOS (ENSMMMG00000018959) #31	JDP2 (ENSMMMG00000018991) #32	BATF (ENSMMMG00000018997) #34	FLVCR2 (ENSMMMG00000019011) #35	ERG28 (ENSMMMG00000019015) #36	ENSMMMG00000019046	TGFB3 (ENSMMMG00000019151)
Marmotini_b	ANCESTRAL SPECIES	31	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402.f #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.g.a #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Arctic ground squirrel	MODERN SPECIES	8	BBOF1 (ENSUPAG00010014608)	ALDH6A1 (ENSUPAG00010014582) #7	LIN52 (ENSUPAG00010014569) #9	VSX2 (ENSUPAG00010014562) #11	ABCD4 (ENSUPAG00010014503) #12	VRTN (ENSUPAG00010014491) #13	SYNDIG1L (ENSUPAG00010014486) #14	NPC2 (ENSUPAG00010014477) #15	ISCA2 (ENSUPAG00010014470) #16	LTBP2 (ENSUPAG00010014320) #17	ENSUPAG00010014316	AREL1 (ENSUPAG00010014265) #18	ENSUPAG00010014237 #19	YLPM1 (ENSUPAG00010014207) #20	PROX2 (ENSUPAG00010014197) #21	DLST (ENSUPAG00010014158) #22	RPS6KL1 (ENSUPAG00010014140) #23	PGF (ENSUPAG00010014126) #24	EIF2B2 (ENSUPAG00010014118) #25	MLH3 (ENSUPAG00010014100) #26	ENSUPAG00010014073 #27	ZC2HC1C (ENSUPAG00010014064) #28	NEK9 (ENSUPAG00010014023) #29	TMED10 (ENSUPAG00010014006) #30	FOS (ENSUPAG00010013998) #31	JDP2 (ENSUPAG00010013987) #32	ENSUPAG00010013983	BATF (ENSUPAG00010013971) #34	FLVCR2 (ENSUPAG00010013953) #35	ERG28 (ENSUPAG00010013948) #36	ENSUPAG00010013566
Squirrel	MODERN SPECIES	88	ENSSTOG00000008087	ALDH6A1 (ENSSTOG00000028534) #7	LIN52 (ENSSTOG00000029773) #9	VSX2 (ENSSTOG00000008114) #11	ABCD4 (ENSSTOG00000009827) #12	VRTN (ENSSTOG00000021434) #13	SYNDIG1L (ENSSTOG00000007981) #14	NPC2 (ENSSTOG00000007987) #15	ISCA2 (ENSSTOG00000020219) #16	LTBP2 (ENSSTOG00000007996) #17	ENSSTOG00000034311	AREL1 (ENSSTOG00000008036) #18	FCF1 (ENSSTOG00000008083) #19	YLPM1 (ENSSTOG00000014581) #20	PROX2 (ENSSTOG00000023253) #21	DLST (ENSSTOG00000014603) #22	RPS6KL1 (ENSSTOG00000014613) #23	PGF (ENSSTOG00000023041) #24	EIF2B2 (ENSSTOG00000007283) #25	MLH3 (ENSSTOG00000027479) #26	ENSSTOG00000007327 #27	ZC2HC1C (ENSSTOG00000007331) #28	NEK9 (ENSSTOG00000007339) #29	ENSSTOG00000007392 #30	FOS (ENSSTOG00000003005) #31	JDP2 (ENSSTOG00000026831) #32	BATF (ENSSTOG00000024626) #34	FLVCR2 (ENSSTOG00000014389) #35	ERG28 (ENSSTOG00000014394) #36	TTLL5 (ENSSTOG00000014397) #37	TGFB3 (ENSSTOG00000028492)
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Kangaroo rat	MODERN SPECIES	321	ENSDORG00000001878	Rnf113a2 (ENSDORG00000027624)	ENSDORG00000005218	Aldh6a1 (ENSDORG00000005224) #7	Lin52 (ENSDORG00000025156) #9	Vsx2 (ENSDORG00000010911) #11	Abcd4 (ENSDORG00000010912) #12	Vrtn (ENSDORG00000010914) #13	Syndig1l (ENSDORG00000014474) #14	Isca2 (ENSDORG00000027372) #16	Ltbp2 (ENSDORG00000014858) #17	Arel1 (ENSDORG00000027985) #18	Fcf1 (ENSDORG00000009970) #19	Ylpm1 (ENSDORG00000016716) #20	Prox2 (ENSDORG00000027296) #21	Dlst (ENSDORG00000002153) #22	Rps6kl1 (ENSDORG00000002155) #23	Pgf (ENSDORG00000029841) #24	ENSDORG00000004893 #26	Acyp1 (ENSDORG00000029459) #27	Zc2hc1c (ENSDORG00000004895) #28	Nek9 (ENSDORG00000004896) #29	Tmed10 (ENSDORG00000012999) #30	Fos (ENSDORG00000024479) #31	Jdp2 (ENSDORG00000026956) #32	Batf (ENSDORG00000026541) #34	Flvcr2 (ENSDORG00000012890) #35	Erg28 (ENSDORG00000012893) #36	ENSDORG00000012894 #37	Tgfb3 (ENSDORG00000012897)	Ift43 (ENSDORG00000012899)
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Muroidea	ANCESTRAL SPECIES	16	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.g.a #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.g.a #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Golden Hamster	MODERN SPECIES	835	Bbof1 (ENSMAUG00000012362)	Aldh6a1 (ENSMAUG00000016891) #7	Lin52 (ENSMAUG00000011456) #9	Vsx2 (ENSMAUG00000017695) #11	Abcd4 (ENSMAUG00000011789) #12	ENSMAUG00000017258 #13	Syndig1l (ENSMAUG00000013945) #14	Npc2 (ENSMAUG00000020689) #15	Isca2 (ENSMAUG00000019928) #16	ENSMAUG00000017408	Ltbp2 (ENSMAUG00000015694) #17	ENSMAUG00000003058 #18	Fcf1 (ENSMAUG00000014155) #19	Ylpm1 (ENSMAUG00000000879) #20	Prox2 (ENSMAUG00000008593) #21	Dlst (ENSMAUG00000000864) #22	Rps6kl1 (ENSMAUG00000010833) #23	Pgf (ENSMAUG00000000890) #24	Eif2b2 (ENSMAUG00000015945) #25	ENSMAUG00000000844 #26	Acyp1 (ENSMAUG00000000122) #27	Zc2hc1c (ENSMAUG00000014144) #28	Nek9 (ENSMAUG00000000574) #29	Tmed10 (ENSMAUG00000017571) #30	Fos (ENSMAUG00000019419) #31	Jdp2 (ENSMAUG00000014923) #32	Batf (ENSMAUG00000006835) #34	Flvcr2 (ENSMAUG00000016727) #35	Erg28 (ENSMAUG00000011568) #36	ENSMAUG00000011196
Chinese hamster chok1gshd	MODERN SPECIES	2	Aldh6a1 (ENSCGRG00001024154) #7	Lin52 (ENSCGRG00001023668) #9	Vsx2 (ENSCGRG00001023191) #11	Abcd4 (ENSCGRG00001022187) #12	Vrtn (ENSCGRG00001013127) #13	Syndig1l (ENSCGRG00001013830) #14	Npc2 (ENSCGRG00001012790) #15	Isca2 (ENSCGRG00001010257) #16	Ltbp2 (ENSCGRG00001012474) #17	ENSCGRG00001003181	ENSCGRG00001000601	Arel1 (ENSCGRG00001023498) #18	ENSCGRG00001017796 #19	Ylpm1 (ENSCGRG00001015671) #20	Prox2 (ENSCGRG00001021630) #21	Dlst (ENSCGRG00001020056) #22	Rps6kl1 (ENSCGRG00001024635) #23	Pgf (ENSCGRG00001023393) #24	Eif2b2 (ENSCGRG00001019280) #25	Mlh3 (ENSCGRG00001018094) #26	Acyp1 (ENSCGRG00001021281) #27	Zc2hc1c (ENSCGRG00001022271) #28	Nek9 (ENSCGRG00001020024) #29	Tmed10 (ENSCGRG00001009122) #30	Fos (ENSCGRG00001006758) #31	Jdp2 (ENSCGRG00001014531) #32	Batf (ENSCGRG00001012598) #34	Flvcr2 (ENSCGRG00001011591) #35	Erg28 (ENSCGRG00001009404) #36	Ttll5 (ENSCGRG00001012708)	Tgfb3 (ENSCGRG00001009726)
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d.g.a #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Prairie vole	MODERN SPECIES		Entpd5 (ENSMOCG00000020144)	Bbof1 (ENSMOCG00000001378)	Aldh6a1 (ENSMOCG00000018307) #7	Lin52 (ENSMOCG00000017855) #9	Vsx2 (ENSMOCG00000020119) #11	Abcd4 (ENSMOCG00000022046) #12	Vrtn (ENSMOCG00000011795) #13	Syndig1l (ENSMOCG00000013518) #14	Npc2 (ENSMOCG00000013949) #15	Isca2 (ENSMOCG00000000566) #16	Ltbp2 (ENSMOCG00000007456) #17	Arel1 (ENSMOCG00000014662) #18	ENSMOCG00000001860 #19	Ylpm1 (ENSMOCG00000022334) #20	Prox2 (ENSMOCG00000019247) #21	Dlst (ENSMOCG00000022960) #22	Rps6kl1 (ENSMOCG00000020851) #23	ENSMOCG00000002159	Pgf (ENSMOCG00000002312) #24	Eif2b2 (ENSMOCG00000003698) #25	ENSMOCG00000006235 #26	Acyp1 (ENSMOCG00000013303) #27	Zc2hc1c (ENSMOCG00000003376) #28	Nek9 (ENSMOCG00000007711) #29	Tmed10 (ENSMOCG00000022712) #30	Fos (ENSMOCG00000000968) #31	Jdp2 (ENSMOCG00000002176) #32	Batf (ENSMOCG00000014949) #34	Flvcr2 (ENSMOCG00000002645) #35	Erg28 (ENSMOCG00000013099) #36	ENSMOCG00000018205
Northern American deer mouse	MODERN SPECIES	5	Bbof1 (ENSPEMG00000020680)	Aldh6a1 (ENSPEMG00000021209) #7	Lin52 (ENSPEMG00000016158) #9	Vsx2 (ENSPEMG00000014515) #11	Abcd4 (ENSPEMG00000021386) #12	Vrtn (ENSPEMG00000020660) #13	Syndig1l (ENSPEMG00000030499) #14	Npc2 (ENSPEMG00000030688) #15	Isca2 (ENSPEMG00000028312) #16	Ltbp2 (ENSPEMG00000015484) #17	ENSPEMG00000029842	Arel1 (ENSPEMG00000020566) #18	Fcf1 (ENSPEMG00000012596) #19	Ylpm1 (ENSPEMG00000020843) #20	Prox2 (ENSPEMG00000020502) #21	Dlst (ENSPEMG00000009929) #22	Rps6kl1 (ENSPEMG00000011503) #23	Pgf (ENSPEMG00000017060) #24	Eif2b2 (ENSPEMG00000007004) #25	Mlh3 (ENSPEMG00000005719) #26	Acyp1 (ENSPEMG00000010196) #27	Zc2hc1c (ENSPEMG00000000113) #28	Nek9 (ENSPEMG00000016848) #29	ENSPEMG00000001102 #30	Fos (ENSPEMG00000025669) #31	Jdp2 (ENSPEMG00000027096) #32	Batf (ENSPEMG00000026240) #34	Flvcr2 (ENSPEMG00000021330) #35	Erg28 (ENSPEMG00000022195) #36	Ttll5 (ENSPEMG00000011267)	Tgfb3 (ENSPEMG00000023520)
Murinae	ANCESTRAL SPECIES	8	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Mus	ANCESTRAL SPECIES	10	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Mus_A	ANCESTRAL SPECIES	17	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Mus_B	ANCESTRAL SPECIES	17	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Mouse	MODERN SPECIES	3	Bbof1 (ENSMUSG00000057265)	Rnf113a2 (ENSMUSG00000098134)	Aldh6a1 (ENSMUSG00000021238) #7	Lin52 (ENSMUSG00000085793) #9	Vsx2 (ENSMUSG00000021239) #11	Abcd4 (ENSMUSG00000021240) #12	Vrtn (ENSMUSG00000071235) #13	Syndig1l (ENSMUSG00000071234) #14	Npc2 (ENSMUSG00000021242) #15	Isca2 (ENSMUSG00000021241) #16	Ltbp2 (ENSMUSG00000002020) #17	Arel1 (ENSMUSG00000042350) #18	Fcf1 (ENSMUSG00000021243) #19	Ylpm1 (ENSMUSG00000021244) #20	Prox2 (ENSMUSG00000042320) #21	Dlst (ENSMUSG00000004789) #22	Rps6kl1 (ENSMUSG00000019235) #23	Pgf (ENSMUSG00000004791) #24	Eif2b2 (ENSMUSG00000004788) #25	Mlh3 (ENSMUSG00000021245) #26	Acyp1 (ENSMUSG00000008822) #27	Zc2hc1c (ENSMUSG00000045064) #28	Nek9 (ENSMUSG00000034290) #29	Tmed10 (ENSMUSG00000021248) #30	Fos (ENSMUSG00000021250) #31	Jdp2 (ENSMUSG00000034271) #32	Batf (ENSMUSG00000034266) #34	Flvcr2 (ENSMUSG00000034258) #35	Erg28 (ENSMUSG00000021252) #36	Ttll5 (ENSMUSG00000012609)	Tgfb3 (ENSMUSG00000021253)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00390000016292.g.a.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Steppe mouse	MODERN SPECIES	3303	Bbof1 (ENSMSIG00000003750)	Aldh6a1 (ENSMSIG00000003829) #7	ENSMSIG00000003864 #9	Vsx2 (ENSMSIG00000003898) #11	Abcd4 (ENSMSIG00000003952) #12	Vrtn (ENSMSIG00000004123) #13	ENSMSIG00000004137 #14	Npc2 (ENSMSIG00000004195) #15	Isca2 (ENSMSIG00000004207) #16	Ltbp2 (ENSMSIG00000004256) #17	ENSMSIG00000004608	Arel1 (ENSMSIG00000004619) #18	ENSMSIG00000004690 #19	Ylpm1 (ENSMSIG00000004817) #20	Prox2 (ENSMSIG00000005003) #21	Dlst (ENSMSIG00000005032) #22	Rps6kl1 (ENSMSIG00000005067) #23	Pgf (ENSMSIG00000005142) #24
spretus	MODERN SPECIES	3	Rnf113a2 (MGP_SPRETEiJ_G0018788)	Aldh6a1 (MGP_SPRETEiJ_G0018789) #7	MGP_SPRETEiJ_G0018790 #9	Vsx2 (MGP_SPRETEiJ_G0018791) #11	Abcd4 (MGP_SPRETEiJ_G0018792) #12	Vrtn (MGP_SPRETEiJ_G0018793) #13	Syndig1l (MGP_SPRETEiJ_G0018794) #14	Npc2 (MGP_SPRETEiJ_G0018795) #15	Isca2 (MGP_SPRETEiJ_G0018796) #16	Ltbp2 (MGP_SPRETEiJ_G0018797) #17	MGP_SPRETEiJ_G0018798	MGP_SPRETEiJ_G0018799 #18	Fcf1 (MGP_SPRETEiJ_G0018800) #19	Ylpm1 (MGP_SPRETEiJ_G0018801) #20	Prox2 (MGP_SPRETEiJ_G0018802) #21	Dlst (MGP_SPRETEiJ_G0018803) #22	Rps6kl1 (MGP_SPRETEiJ_G0018804) #23	Pgf (MGP_SPRETEiJ_G0018805) #24	Eif2b2 (MGP_SPRETEiJ_G0018806) #25	Mlh3 (MGP_SPRETEiJ_G0018807) #26	Acyp1 (MGP_SPRETEiJ_G0018808) #27	Zc2hc1c (MGP_SPRETEiJ_G0018809) #28	Nek9 (MGP_SPRETEiJ_G0018810) #29	MGP_SPRETEiJ_G0018811 #30	MGP_SPRETEiJ_G0018812	Fos (MGP_SPRETEiJ_G0018813) #31	Jdp2 (MGP_SPRETEiJ_G0018814) #32	Batf (MGP_SPRETEiJ_G0018815) #34	Flvcr2 (MGP_SPRETEiJ_G0018816) #35	Erg28 (MGP_SPRETEiJ_G0018817) #36	Ttll5 (MGP_SPRETEiJ_G0018818)
Ryukyu mouse	MODERN SPECIES	3	Rnf113a2 (MGP_CAROLIEiJ_G0017943)	Aldh6a1 (MGP_CAROLIEiJ_G0017944) #7	MGP_CAROLIEiJ_G0017945 #9	Vsx2 (MGP_CAROLIEiJ_G0017946) #11	Abcd4 (MGP_CAROLIEiJ_G0017947) #12	Vrtn (MGP_CAROLIEiJ_G0017948) #13	Syndig1l (MGP_CAROLIEiJ_G0017949) #14	Npc2 (MGP_CAROLIEiJ_G0017950) #15	Isca2 (MGP_CAROLIEiJ_G0017951) #16	Ltbp2 (MGP_CAROLIEiJ_G0017952) #17	MGP_CAROLIEiJ_G0017953	Arel1 (MGP_CAROLIEiJ_G0017954) #18	Fcf1 (MGP_CAROLIEiJ_G0017955) #19	Ylpm1 (MGP_CAROLIEiJ_G0017956) #20	Prox2 (MGP_CAROLIEiJ_G0017957) #21	Dlst (MGP_CAROLIEiJ_G0017958) #22	Rps6kl1 (MGP_CAROLIEiJ_G0017959) #23	Pgf (MGP_CAROLIEiJ_G0017960) #24	Eif2b2 (MGP_CAROLIEiJ_G0017961) #25	Mlh3 (MGP_CAROLIEiJ_G0017962) #26	Acyp1 (MGP_CAROLIEiJ_G0017963) #27	Zc2hc1c (MGP_CAROLIEiJ_G0017964) #28	Nek9 (MGP_CAROLIEiJ_G0017965) #29	Tmed10 (MGP_CAROLIEiJ_G0017966) #30	Fos (MGP_CAROLIEiJ_G0017967) #31	Jdp2 (MGP_CAROLIEiJ_G0017968) #32	Batf (MGP_CAROLIEiJ_G0017969) #34	Flvcr2 (MGP_CAROLIEiJ_G0017970) #35	Erg28 (MGP_CAROLIEiJ_G0017971) #36	Ttll5 (MGP_CAROLIEiJ_G0017972)	Tgfb3 (MGP_CAROLIEiJ_G0017973)
Shrew mouse	MODERN SPECIES	20	Rnf113a2 (MGP_PahariEiJ_G0029702)	Aldh6a1 (MGP_PahariEiJ_G0029703) #7	MGP_PahariEiJ_G0029704 #9	Vsx2 (MGP_PahariEiJ_G0029705) #11	Abcd4 (MGP_PahariEiJ_G0029706) #12	Vrtn (MGP_PahariEiJ_G0029707) #13	Syndig1l (MGP_PahariEiJ_G0029708) #14	Npc2 (MGP_PahariEiJ_G0029709) #15	Isca2 (MGP_PahariEiJ_G0029710) #16	Ltbp2 (MGP_PahariEiJ_G0029711) #17	MGP_PahariEiJ_G0029712	MGP_PahariEiJ_G0029713 #18	Fcf1 (MGP_PahariEiJ_G0029714) #19	Ylpm1 (MGP_PahariEiJ_G0029715) #20	Prox2 (MGP_PahariEiJ_G0029716) #21	Dlst (MGP_PahariEiJ_G0029717) #22	Rps6kl1 (MGP_PahariEiJ_G0029718) #23	Pgf (MGP_PahariEiJ_G0029719) #24	Eif2b2 (MGP_PahariEiJ_G0029720) #25	Mlh3 (MGP_PahariEiJ_G0029721) #26	Acyp1 (MGP_PahariEiJ_G0029722) #27	Zc2hc1c (MGP_PahariEiJ_G0029723) #28	Nek9 (MGP_PahariEiJ_G0029724) #29	Tmed10 (MGP_PahariEiJ_G0029725) #30	Fos (MGP_PahariEiJ_G0029726) #31	Jdp2 (MGP_PahariEiJ_G0029727) #32	Batf (MGP_PahariEiJ_G0029728) #34	Flvcr2 (MGP_PahariEiJ_G0029729) #35	Erg28 (MGP_PahariEiJ_G0029730) #36	Ttll5 (MGP_PahariEiJ_G0029731)	Tgfb3 (MGP_PahariEiJ_G0029732)
Rat	MODERN SPECIES	16	Rnf113a2 (ENSRNOG00000067995)	Aldh6a1 (ENSRNOG00000011419) #7	Lin52 (ENSRNOG00000043441) #9	Vsx2 (ENSRNOG00000011918) #11	Abcd4 (ENSRNOG00000011964) #12	Vrtn (ENSRNOG00000048378) #13	Syndig1l (ENSRNOG00000027645) #14	Npc2 (ENSRNOG00000012062) #15	Isca2 (ENSRNOG00000012085) #16	Ltbp2 (ENSRNOG00000012094) #17	Arel1 (ENSRNOG00000004382) #18	Fcf1 (ENSRNOG00000004723) #19	Ylpm1 (ENSRNOG00000027317) #20	Lsm5 (ENSRNOG00000027305)	Prox2 (ENSRNOG00000005054) #21	Dlst (ENSRNOG00000005061) #22	Rps6kl1 (ENSRNOG00000005530) #23	Pgf (ENSRNOG00000005650) #24	Eif2b2 (ENSRNOG00000006467) #25	Mlh3 (ENSRNOG00000006699) #26	Acyp1 (ENSRNOG00000006744) #27	Zc2hc1c (ENSRNOG00000027115) #28	Nek9 (ENSRNOG00000058572) #29	Tmed10 (ENSRNOG00000007901) #30	Fos (ENSRNOG00000008015) #31	Jdp2 (ENSRNOG00000063964) #32	Batf (ENSRNOG00000008588) #34	Flvcr2 (ENSRNOG00000008754) #35	Erg28 (ENSRNOG00000008781) #36	Ttll5 (ENSRNOG00000009318)	Tgfb3 (ENSRNOG00000009867)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1502	Coq6 (ENSNGAG00000015962)	Entpd5 (ENSNGAG00000011773)	Bbof1 (ENSNGAG00000013123)	Aldh6a1 (ENSNGAG00000000245) #7	Lin52 (ENSNGAG00000014697) #9	Vsx2 (ENSNGAG00000011608) #11	Abcd4 (ENSNGAG00000017662) #12	Syndig1l (ENSNGAG00000013742) #14	Npc2 (ENSNGAG00000012246) #15	ENSNGAG00000001197	Ltbp2 (ENSNGAG00000019830) #17	Arel1 (ENSNGAG00000013039) #18	Fcf1 (ENSNGAG00000004711) #19	Ylpm1 (ENSNGAG00000013855) #20	Prox2 (ENSNGAG00000019326) #21	Dlst (ENSNGAG00000012679) #22	Rps6kl1 (ENSNGAG00000013728) #23	Pgf (ENSNGAG00000000539) #24	Eif2b2 (ENSNGAG00000012270) #25	Mlh3 (ENSNGAG00000014700) #26	Acyp1 (ENSNGAG00000007984) #27	Zc2hc1c (ENSNGAG00000019419) #28	Nek9 (ENSNGAG00000017456) #29	Tmed10 (ENSNGAG00000011251) #30	Fos (ENSNGAG00000009761) #31	Jdp2 (ENSNGAG00000001677) #32	Batf (ENSNGAG00000020639) #34	Flvcr2 (ENSNGAG00000016955) #35	Erg28 (ENSNGAG00000011973) #36	ENSNGAG00000000162
Lesser Egyptian jerboa	MODERN SPECIES	41	Bbof1 (ENSJJAG00000012977)	Aldh6a1 (ENSJJAG00000005519) #7	ENSJJAG00000015460 #9	Vsx2 (ENSJJAG00000011877) #11	Abcd4 (ENSJJAG00000014302) #12	Vrtn (ENSJJAG00000008057) #13	Syndig1l (ENSJJAG00000012505) #14	Npc2 (ENSJJAG00000017648) #15	Isca2 (ENSJJAG00000015802) #16	Ltbp2 (ENSJJAG00000016908) #17	ENSJJAG00000011505	Arel1 (ENSJJAG00000023937) #18	Fcf1 (ENSJJAG00000015320) #19	Ylpm1 (ENSJJAG00000017599) #20	Prox2 (ENSJJAG00000017786) #21	Dlst (ENSJJAG00000016242) #22	Rps6kl1 (ENSJJAG00000013675) #23	Pgf (ENSJJAG00000017768) #24	Eif2b2 (ENSJJAG00000015912) #25	ENSJJAG00000017233 #26	Acyp1 (ENSJJAG00000011511) #27	Zc2hc1c (ENSJJAG00000011295) #28	Nek9 (ENSJJAG00000009859) #29	ENSJJAG00000016452 #30	ENSJJAG00000011402	Fos (ENSJJAG00000007870) #31	Jdp2 (ENSJJAG00000010927) #32	Batf (ENSJJAG00000008958) #34	Flvcr2 (ENSJJAG00000012474) #35	Erg28 (ENSJJAG00000016443) #36	ENSJJAG00000012936
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00530000064848	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162910
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00530000064848	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Carnivora	ANCESTRAL SPECIES		ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Caniformia	ANCESTRAL SPECIES	15	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Canidae	ANCESTRAL SPECIES	4	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223.q #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00670000098076.ab	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.e #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223.q #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00670000098076.ab	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B.e #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000163712	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162910
Dingo	MODERN SPECIES	161	ENTPD5 (ENSCAFG00020004058)	BBOF1 (ENSCAFG00020004003)	ALDH6A1 (ENSCAFG00020003666) #7	LIN52 (ENSCAFG00020003644) #9	VSX2 (ENSCAFG00020003629) #11	ENSCAFG00020003625 #12	ENSCAFG00020003619 #12	VRTN (ENSCAFG00020003595) #13	ENSCAFG00020003586 #15	ISCA2 (ENSCAFG00020003579) #16	LTBP2 (ENSCAFG00020003464) #17	AREL1 (ENSCAFG00020003085) #18	ENSCAFG00020003053	YLPM1 (ENSCAFG00020002557) #20	PROX2 (ENSCAFG00020002501) #21	DLST (ENSCAFG00020002488) #22	RPS6KL1 (ENSCAFG00020002467) #23	PGF (ENSCAFG00020002459) #24	EIF2B2 (ENSCAFG00020002450) #25	MLH3 (ENSCAFG00020002443) #26	ENSCAFG00020002438 #27	ZC2HC1C (ENSCAFG00020002433) #28	NEK9 (ENSCAFG00020002125) #29	TMED10 (ENSCAFG00020002100) #30	ENSCAFG00020002090	FOS (ENSCAFG00020002082) #31	JDP2 (ENSCAFG00020002072) #32	BATF (ENSCAFG00020002062) #34	ENSCAFG00020002058	FLVCR2 (ENSCAFG00020002054) #35	ERG28 (ENSCAFG00020002048) #36
Dog	MODERN SPECIES	36	ALDH6A1 (ENSCAFG00845013992) #7	LIN52 (ENSCAFG00845014059) #9	VSX2 (ENSCAFG00845014112) #11	ENSCAFG00845014165 #12	ENSCAFG00845014218	ENSCAFG00845014241 #13	ENSCAFG00845014257 #14	NPC2 (ENSCAFG00845014286) #15	ISCA2 (ENSCAFG00845014307) #16	LTBP2 (ENSCAFG00845014362) #17	AREL1 (ENSCAFG00845014520) #18	FCF1 (ENSCAFG00845014562) #19	YLPM1 (ENSCAFG00845014628) #20	ENSCAFG00845014672	ENSCAFG00845014690 #21	DLST (ENSCAFG00845014735) #22	RPS6KL1 (ENSCAFG00845014807) #23	ENSCAFG00845014841 #24	EIF2B2 (ENSCAFG00845014894) #25	MLH3 (ENSCAFG00845014944) #26	ACYP1 (ENSCAFG00845015059) #27	ZC2HC1C (ENSCAFG00845015123) #28	NEK9 (ENSCAFG00845015171) #29	TMED10 (ENSCAFG00845015221) #30	ENSCAFG00845015259	FOS (ENSCAFG00845015304) #31	JDP2 (ENSCAFG00845015414) #32	BATF (ENSCAFG00845015458) #34	FLVCR2 (ENSCAFG00845015506) #35	ENSCAFG00845015573 #36	TTLL5 (ENSCAFG00845015662) #37
Red fox	MODERN SPECIES	71	BBOF1 (ENSVVUG00000004994)	ALDH6A1 (ENSVVUG00000005031) #7	LIN52 (ENSVVUG00000005034) #9	VSX2 (ENSVVUG00000005042) #11	ABCD4 (ENSVVUG00000005058) #12	VRTN (ENSVVUG00000005086) #13	SYNDIG1L (ENSVVUG00000005089) #14	NPC2 (ENSVVUG00000005100) #15	ISCA2 (ENSVVUG00000005108) #16	LTBP2 (ENSVVUG00000005123) #17	ENSVVUG00000005169	AREL1 (ENSVVUG00000005173) #18	YLPM1 (ENSVVUG00000005181) #20	ENSVVUG00000005198	PROX2 (ENSVVUG00000005203) #21	DLST (ENSVVUG00000005214) #22	RPS6KL1 (ENSVVUG00000005216) #23	PGF (ENSVVUG00000005220) #24	ENSVVUG00000005229 #25	MLH3 (ENSVVUG00000005236) #26	ENSVVUG00000005257 #27	ZC2HC1C (ENSVVUG00000005265) #28	NEK9 (ENSVVUG00000005288) #29	TMED10 (ENSVVUG00000005652) #30	FOS (ENSVVUG00000005656) #31	JDP2 (ENSVVUG00000005661) #32	BATF (ENSVVUG00000005666) #34	FLVCR2 (ENSVVUG00000005669) #35	ENSVVUG00000005675	ERG28 (ENSVVUG00000005717) #36	TTLL5 (ENSVVUG00000005760) #37
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Mustelinae	ANCESTRAL SPECIES	14	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
American mink	MODERN SPECIES		CN045 (ENSNVIG00000016193)	ALDH6A1 (ENSNVIG00000016166) #7	ENSNVIG00000016153 #9	VSX2 (ENSNVIG00000016140) #11	ABCD4 (ENSNVIG00000016067) #12	VRTN (ENSNVIG00000016057) #13	SYNDIG1L (ENSNVIG00000016048) #14	NPC2 (ENSNVIG00000016016) #15	ISCA2 (ENSNVIG00000015997) #16	LTBP2 (ENSNVIG00000015855) #17	ENSNVIG00000015839	K0317 (ENSNVIG00000015832) #18	FCF1 (ENSNVIG00000015797) ##19	YLPM1 (ENSNVIG00000015689) #20	ENSNVIG00000015674 #21	DLST (ENSNVIG00000015642) #22	RPS6KL1 (ENSNVIG00000015611) #23	PGF (ENSNVIG00000015578) #24	ENSNVIG00000015550 #25	MLH3 (ENSNVIG00000015467) #26	ENSNVIG00000015447 #27	ZC2HC1C (ENSNVIG00000015432) #28	NEK9 (ENSNVIG00000015397) #29	TMED10 (ENSNVIG00000015385) #30	FOS (ENSNVIG00000015338) #31	JDP2 (ENSNVIG00000015295) #32	BATF (ENSNVIG00000015275) #34	ENSNVIG00000015265 #35	ERG28 (ENSNVIG00000015241) #36	ENSNVIG00000015195 #35	TTLL5 (ENSNVIG00000014956) #37
Ferret	MODERN SPECIES	164	ENTPD5 (ENSMPUG00000009544)	BBOF1 (ENSMPUG00000009527)	ALDH6A1 (ENSMPUG00000009514) #7	LIN52 (ENSMPUG00000009501) #9	VSX2 (ENSMPUG00000009490) #11	ABCD4 (ENSMPUG00000009467) #12	VRTN (ENSMPUG00000019665) #13	SYNDIG1L (ENSMPUG00000009458) #14	NPC2 (ENSMPUG00000009402) #15	ISCA2 (ENSMPUG00000009385) #16	LTBP2 (ENSMPUG00000009367) #17	AREL1 (ENSMPUG00000009357) #18	FCF1 (ENSMPUG00000009321) ##19	YLPM1 (ENSMPUG00000009308) #20	PROX2 (ENSMPUG00000009289) #21	DLST (ENSMPUG00000009271) #22	RPS6KL1 (ENSMPUG00000009264) #23	PGF (ENSMPUG00000009258) #24	MLH3 (ENSMPUG00000009249) #26	EIF2B2 (ENSMPUG00000009241) #25	ENSMPUG00000009236 #27	ZC2HC1C (ENSMPUG00000009227) #28	NEK9 (ENSMPUG00000009195) #29	TMED10 (ENSMPUG00000009159) #30	FOS (ENSMPUG00000009153) #31	JDP2 (ENSMPUG00000009147) #32	BATF (ENSMPUG00000009143) #34	FLVCR2 (ENSMPUG00000009132) #35	ERG28 (ENSMPUG00000009099) #36	TTLL5 (ENSMPUG00000009065) #37	TGFB3 (ENSMPUG00000009060)
Ursidae	ANCESTRAL SPECIES	10	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223.t #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.y #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Giant Panda	MODERN SPECIES	5	ENTPD5 (ENSAMEG00000018251)	BBOF1 (ENSAMEG00000018255)	ALDH6A1 (ENSAMEG00000018257) #7	LIN52 (ENSAMEG00000026519) #9	VSX2 (ENSAMEG00000018271) #11	ABCD4 (ENSAMEG00000018272) #12	VRTN (ENSAMEG00000027533) #13	SYNDIG1L (ENSAMEG00000024409) #14	NPC2 (ENSAMEG00000024412) #15	ISCA2 (ENSAMEG00000018270) #16	LTBP2 (ENSAMEG00000018286) #17	AREL1 (ENSAMEG00000018293) #18	FCF1 (ENSAMEG00000018296) #19	YLPM1 (ENSAMEG00000018299) #20	ENSAMEG00000029719 #21	DLST (ENSAMEG00000018307) #22	RPS6KL1 (ENSAMEG00000018311) #23	ENSAMEG00000026677 #24	EIF2B2 (ENSAMEG00000018315) #25	MLH3 (ENSAMEG00000018320) #26	ENSAMEG00000025824 #27	ZC2HC1C (ENSAMEG00000018327) #28	NEK9 (ENSAMEG00000018328) #29	TMED10 (ENSAMEG00000018333) #30	FOS (ENSAMEG00000027409) #31	JDP2 (ENSAMEG00000018337) #32	BATF (ENSAMEG00000025412) #34	FLVCR2 (ENSAMEG00000018339) #35	ERG28 (ENSAMEG00000018343) #36	TTLL5 (ENSAMEG00000018345) #37	TGFB3 (ENSAMEG00000018349)
Ursus	ANCESTRAL SPECIES	11	ENSGT00390000015152	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223.t #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954.y #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Polar bear	MODERN SPECIES	100	FAM161B (ENSUMAG00000008908)	COQ6 (ENSUMAG00000008906)	ENTPD5 (ENSUMAG00000008900)	BBOF1 (ENSUMAG00000008882)	ALDH6A1 (ENSUMAG00000008875) #7	LIN52 (ENSUMAG00000008858) #9	ABCD4 (ENSUMAG00000008856) #12	SYNDIG1L (ENSUMAG00000008850) #14	NPC2 (ENSUMAG00000008831) #15	ISCA2 (ENSUMAG00000008826) #16	LTBP2 (ENSUMAG00000008811) #17	AREL1 (ENSUMAG00000008802) #18	ENSUMAG00000008797 ##19	YLPM1 (ENSUMAG00000008386) #20	PROX2 (ENSUMAG00000008333) #21	DLST (ENSUMAG00000008287) #22	RPS6KL1 (ENSUMAG00000008272) #23	ENSUMAG00000008264	ENSUMAG00000008261 #24	EIF2B2 (ENSUMAG00000008256) #25	MLH3 (ENSUMAG00000008145) #26	ENSUMAG00000008119 #27	ZC2HC1C (ENSUMAG00000008115) #28	NEK9 (ENSUMAG00000007797) #29	TMED10 (ENSUMAG00000007763) #30	FOS (ENSUMAG00000007758) #31	JDP2 (ENSUMAG00000007737) #32	BATF (ENSUMAG00000007730) #34	FLVCR2 (ENSUMAG00000007713) #35	ERG28 (ENSUMAG00000007701) #36	TTLL5 (ENSUMAG00000007586) #37
American black bear	DUPLICATION
American black bear	MODERN SPECIES	60																ENSUAMG00000013534 #22	RPS6KL1 (ENSUAMG00000013529) #23	PGF (ENSUAMG00000013523) #24	EIF2B2 (ENSUAMG00000013519) #25	MLH3 (ENSUAMG00000013512) #26	ENSUAMG00000013508 #27	ZC2HC1C (ENSUAMG00000013505) #28	NEK9 (ENSUAMG00000013350) #29	ENSUAMG00000013345 #30	ENSUAMG00000013342 #31
American black bear	MODERN SPECIES	7219															ENSUAMG00000010152	ENSUAMG00000010150 #22
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000004322.a.b.j.f.b	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00670000098076.y	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Cat	MODERN SPECIES	237	ALDH6A1 (ENSFCAG00000006202) #7	LIN52 (ENSFCAG00000042593) #9	VSX2 (ENSFCAG00000041695) #11	ABCD4 (ENSFCAG00000006206) #12	ENSFCAG00000041962	VRTN (ENSFCAG00000006363) #13	SYNDIG1L (ENSFCAG00000006364) #14	NPC2 (ENSFCAG00000029894) #15	ISCA2 (ENSFCAG00000040858) #16	LTBP2 (ENSFCAG00000006366) #17	ENSFCAG00000053735	AREL1 (ENSFCAG00000006368) #18	FCF1 (ENSFCAG00000022753) ##19	YLPM1 (ENSFCAG00000033466) #20	PROX2 (ENSFCAG00000028658) #21	DLST (ENSFCAG00000006372) #22	RPS6KL1 (ENSFCAG00000000756) #23	PGF (ENSFCAG00000036808) #24	EIF2B2 (ENSFCAG00000028235) #25	MLH3 (ENSFCAG00000025866) #26	ACYP1 (ENSFCAG00000022756) #27	ZC2HC1C (ENSFCAG00000006375) #28	NEK9 (ENSFCAG00000025501) #29	TMED10 (ENSFCAG00000001472) #30	FOS (ENSFCAG00000025370) #31	JDP2 (ENSFCAG00000029464) #32	BATF (ENSFCAG00000036906) #34	FLVCR2 (ENSFCAG00000014196) #35	ERG28 (ENSFCAG00000014198) #36	TTLL5 (ENSFCAG00000014200) #37	TGFB3 (ENSFCAG00000014204)
Panthera	ANCESTRAL SPECIES	3	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000004322.a.b.j.f.b	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00670000098076.y	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000004322.a.b.j.f.b	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00670000098076.y	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
leopard	MODERN SPECIES	109	BBOF1 (ENSPPRG00000018080)	ALDH6A1 (ENSPPRG00000016252) #7	LIN52 (ENSPPRG00000014701) #9	VSX2 (ENSPPRG00000014452) #11	ABCD4 (ENSPPRG00000014193) #12	ENSPPRG00000020217	SYNDIG1L (ENSPPRG00000012500) #14	NPC2 (ENSPPRG00000012026) #15	ISCA2 (ENSPPRG00000011662) #16	LTBP2 (ENSPPRG00000010146) #17	AREL1 (ENSPPRG00000006846) #18	ENSPPRG00000006398 #19	YLPM1 (ENSPPRG00000005704) #20	ENSPPRG00000004808	ENSPPRG00000004385 #21	DLST (ENSPPRG00000004226) #22	RPS6KL1 (ENSPPRG00000003181) #23	PGF (ENSPPRG00000001100) #24	EIF2B2 (ENSPPRG00000000321) #25	MLH3 (ENSPPRG00000022709) #26	ENSPPRG00000023976 #27	ZC2HC1C (ENSPPRG00000024260) #28	NEK9 (ENSPPRG00000022516) #29	TMED10 (ENSPPRG00000019952) #30	FOS (ENSPPRG00000019513) #31	JDP2 (ENSPPRG00000018181) #32	BATF (ENSPPRG00000016427) #34	FLVCR2 (ENSPPRG00000015729) #35	ERG28 (ENSPPRG00000012901) #36	TTLL5 (ENSPPRG00000012572) #37	TGFB3 (ENSPPRG00000008430)
lion	MODERN SPECIES	6	ALDH6A1 (ENSPLOG00000001208) #7	LIN52 (ENSPLOG00000001251) #9	VSX2 (ENSPLOG00000001284) #11	ABCD4 (ENSPLOG00000001310) #12	ENSPLOG00000001333	VRTN (ENSPLOG00000001350) #13	SYNDIG1L (ENSPLOG00000001355) #14	NPC2 (ENSPLOG00000001365) #15	ISCA2 (ENSPLOG00000001378) #16	LTBP2 (ENSPLOG00000001497) #17	ENSPLOG00000001618	AREL1 (ENSPLOG00000001636) #18	ENSPLOG00000001674 ##19	YLPM1 (ENSPLOG00000001726) #20	ENSPLOG00000001770 #21	DLST (ENSPLOG00000001785) #22	RPS6KL1 (ENSPLOG00000001818) #23	PGF (ENSPLOG00000001839) #24	EIF2B2 (ENSPLOG00000001880) #25	MLH3 (ENSPLOG00000001931) #26	ENSPLOG00000001988 #27	ZC2HC1C (ENSPLOG00000002009) #28	NEK9 (ENSPLOG00000002048) #29	TMED10 (ENSPLOG00000002116) #30	FOS (ENSPLOG00000002140) #31	JDP2 (ENSPLOG00000002179) #32	BATF (ENSPLOG00000002194) #34	FLVCR2 (ENSPLOG00000002234) #35	ERG28 (ENSPLOG00000002289) #36	TTLL5 (ENSPLOG00000002332) #37	TGFB3 (ENSPLOG00000002406)
Tiger	MODERN SPECIES	490	BBOF1 (ENSPTIG00000016264)	ALDH6A1 (ENSPTIG00000016228) #7	LIN52 (ENSPTIG00000016204) #9	VSX2 (ENSPTIG00000016197) #11	ABCD4 (ENSPTIG00000016181) #12	ENSPTIG00000006594	VRTN (ENSPTIG00000016173) #13	SYNDIG1L (ENSPTIG00000016165) #14	NPC2 (ENSPTIG00000016030) #15	ISCA2 (ENSPTIG00000016002) #16	ENSPTIG00000015991 #17	AREL1 (ENSPTIG00000015968) #18	ENSPTIG00000015948 ##19	YLPM1 (ENSPTIG00000015893) #20	PROX2 (ENSPTIG00000015867) #21	DLST (ENSPTIG00000015793) #22	RPS6KL1 (ENSPTIG00000015758) #23	PGF (ENSPTIG00000015737) #24	EIF2B2 (ENSPTIG00000015724) #25	MLH3 (ENSPTIG00000015702) #26	ENSPTIG00000015684 #27	ZC2HC1C (ENSPTIG00000015672) #28	NEK9 (ENSPTIG00000015640) #29	TMED10 (ENSPTIG00000015563) #30	FOS (ENSPTIG00000015550) #31	JDP2 (ENSPTIG00000015529) #32	BATF (ENSPTIG00000015520) #34	ERG28 (ENSPTIG00000015488) #36	FLVCR2 (ENSPTIG00000015461) #35	TTLL5 (ENSPTIG00000015299) #37	TGFB3 (ENSPTIG00000015253)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00530000064848	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Equus	ANCESTRAL SPECIES	17	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f.b.b #35	ENSGT01030000234625.B.d.e.b #35	ENSGT01030000234625.B.d.f.a #35	ENSGT00390000010925 #36
Donkey	MODERN SPECIES	27	BBOF1 (ENSEASG00005011653)	ALDH6A1 (ENSEASG00005011664) #7	LIN52 (ENSEASG00005031315) #9	VSX2 (ENSEASG00005011673) #11	ABCD4 (ENSEASG00005011677) #12	VRTN (ENSEASG00005011680) #13	SYNDIG1L (ENSEASG00005011683) #14	NPC2 (ENSEASG00005023991) #15	ISCA2 (ENSEASG00005032166) #16	LTBP2 (ENSEASG00005011719) #17	ENSEASG00005012000	AREL1 (ENSEASG00005012006) #18	FCF1 (ENSEASG00005012011) ##19	YLPM1 (ENSEASG00005012016) #20	ENSEASG00005032702 #21	DLST (ENSEASG00005012025) #22	RPS6KL1 (ENSEASG00005012030) #23	PGF (ENSEASG00005012033) #24	EIF2B2 (ENSEASG00005012035) #25	MLH3 (ENSEASG00005012041) #26	ENSEASG00005033366 #27	ZC2HC1C (ENSEASG00005012049) #28	NEK9 (ENSEASG00005012069) #29	TMED10 (ENSEASG00005012384) #30	FOS (ENSEASG00005012390) #31	ENSEASG00005025547 #32	BATF (ENSEASG00005037745) #34	ENSEASG00005019748 #35	ENSEASG00005037343 #35	ENSEASG00005026680 #35	ENSEASG00005028828 #35
Horse	MODERN SPECIES	16	ENSECAG00000057994	ALDH6A1 (ENSECAG00000009453) #7	LIN52 (ENSECAG00000022953) #9	ENSECAG00000048527	VSX2 (ENSECAG00000023780) #11	ABCD4 (ENSECAG00000000282) #12	VRTN (ENSECAG00000038256) #13	SYNDIG1L (ENSECAG00000018296) #14	NPC2 (ENSECAG00000018345) #15	ISCA2 (ENSECAG00000018007)	LTBP2 (ENSECAG00000018631) #17	AREL1 (ENSECAG00000059545) #18	FCF1 (ENSECAG00000008261) #19	YLPM1 (ENSECAG00000016305) #20	ENSECAG00000023529 #21	DLST (ENSECAG00000000273) #22	RPS6KL1 (ENSECAG00000014056) #23	PGF (ENSECAG00000031273) #24	EIF2B2 (ENSECAG00000000332) #25	MLH3 (ENSECAG00000008011) #26	ZC2HC1C (ENSECAG00000017661) #28	NEK9 (ENSECAG00000018489) #29	TMED10 (ENSECAG00000008831) #30	FOS (ENSECAG00000014260) #31	JDP2 (ENSECAG00000034290) #32	ENSECAG00000017937 #35	BATF (ENSECAG00000016422) #34	ENSECAG00000055708	ENSECAG00000056517 #35	ENSECAG00000055095 #35	ENSECAG00000051647 #35
Chiroptera	ANCESTRAL SPECIES	15	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00530000064848	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Megabat	MODERN SPECIES	922	BBOF1 (ENSPVAG00000000644)	ALDH6A1 (ENSPVAG00000000645) #7	LIN52 (ENSPVAG00000000646) #9	VSX2 (ENSPVAG00000000647) #11	ABCD4 (ENSPVAG00000000648) #12	VRTN (ENSPVAG00000000649) #13	SYNDIG1L (ENSPVAG00000000650) #14	NPC2 (ENSPVAG00000000651) #15	ISCA2 (ENSPVAG00000000652) #16	LTBP2 (ENSPVAG00000000653) #17	AREL1 (ENSPVAG00000000655) #18	ENSPVAG00000000656	FCF1 (ENSPVAG00000000657) ##19	YLPM1 (ENSPVAG00000000658) #20	PROX2 (ENSPVAG00000000659) #21	DLST (ENSPVAG00000000660) #22	RPS6KL1 (ENSPVAG00000000661) #23	PGF (ENSPVAG00000000662) #24	EIF2B2 (ENSPVAG00000000663) #25	MLH3 (ENSPVAG00000000664) #26	ENSPVAG00000000666 #27	NEK9 (ENSPVAG00000000667) #29	TMED10 (ENSPVAG00000000670) #30	FOS (ENSPVAG00000000671) #31	JDP2 (ENSPVAG00000000672) #32	BATF (ENSPVAG00000000674) #34	FLVCR2 (ENSPVAG00000000675) #35	ERG28 (ENSPVAG00000000677) #36	TTLL5 (ENSPVAG00000000679) #37	TGFB3 (ENSPVAG00000000681)	IFT43 (ENSPVAG00000000683)
Microchiroptera	ANCESTRAL SPECIES	19	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Microbat	MODERN SPECIES	1172							VSX2 (ENSMLUG00000010090) #11	ABCD4 (ENSMLUG00000004541) #12	SYNDIG1L (ENSMLUG00000004551) #14	NPC2 (ENSMLUG00000004558) #15	ENSMLUG00000029419 #16	ENSMLUG00000012381 #18	ENSMLUG00000022193	YLPM1 (ENSMLUG00000004983) #20	PROX2 (ENSMLUG00000005898) #21	DLST (ENSMLUG00000005909) #22	RPS6KL1 (ENSMLUG00000005917) #23	ENSMLUG00000005931 #24	ENSMLUG00000005942 #25	MLH3 (ENSMLUG00000005949) #26	ENSMLUG00000007742 #27	ZC2HC1C (ENSMLUG00000010524) #28	NEK9 (ENSMLUG00000010541) #29	ENSMLUG00000017125 #30	FOS (ENSMLUG00000003729) #31	ENSMLUG00000002256 #32	BATF (ENSMLUG00000013360) #34	FLVCR2 (ENSMLUG00000013362) #35	ERG28 (ENSMLUG00000013376) #36	TTLL5 (ENSMLUG00000013381) #37	TGFB3 (ENSMLUG00000013406)
Greater horseshoe bat	MODERN SPECIES	24	ENTPD5 (ENSRFEG00010002649)	BBOF1 (ENSRFEG00010002580)	ALDH6A1 (ENSRFEG00010002445) #7	LIN52 (ENSRFEG00010002408) #9	VSX2 (ENSRFEG00010002363) #11	ABCD4 (ENSRFEG00010002301) #12	VRTN (ENSRFEG00010002267) #13	SYNDIG1L (ENSRFEG00010002259) #14	NPC2 (ENSRFEG00010002250) #15	ISCA2 (ENSRFEG00010002215) #16	LTBP2 (ENSRFEG00010002042) #17	AREL1 (ENSRFEG00010001938) #18	ENSRFEG00010001893 #19	YLPM1 (ENSRFEG00010001752) #20	ENSRFEG00010001697 #21	DLST (ENSRFEG00010001634) #22	RPS6KL1 (ENSRFEG00010001576) #23	PGF (ENSRFEG00010001542) #24	EIF2B2 (ENSRFEG00010001498) #25	MLH3 (ENSRFEG00010001317) #26	ZC2HC1C (ENSRFEG00010001234) #28	NEK9 (ENSRFEG00010001168) #29	TMED10 (ENSRFEG00010001139) #30	FOS (ENSRFEG00010001112) #31	JDP2 (ENSRFEG00010001081) #32	BATF (ENSRFEG00010001057) #34	ERG28 (ENSRFEG00010001031) #36	FLVCR2 (ENSRFEG00010000978) #35	TTLL5 (ENSRFEG00010000797) #37	TGFB3 (ENSRFEG00010000739)	IFT43 (ENSRFEG00010000684)
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00530000064848	ENSGT00940000153117.B.c.b ##19	ENSGT00940000153117.B.c.a ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00530000064848	ENSGT00940000153117.B.c.b ##19	ENSGT00940000153117.B.c.a ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Camelidae	ANCESTRAL SPECIES	8	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.a ##19	ENSGT00530000064848	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Arabian camel	MODERN SPECIES	32	ENTPD5 (ENSCDRG00005008760)	BBOF1 (ENSCDRG00005008989)	ALDH6A1 (ENSCDRG00005000113) #7	LIN52 (ENSCDRG00005000203) #9	VSX2 (ENSCDRG00005000228) #11	ABCD4 (ENSCDRG00005000282) #12	VRTN (ENSCDRG00005000338) #13	SYNDIG1L (ENSCDRG00005000359) #14	NPC2 (ENSCDRG00005000375) #15	ISCA2 (ENSCDRG00005000399) #16	LTBP2 (ENSCDRG00005000468) #17	AREL1 (ENSCDRG00005000590) #18	FCF1 (ENSCDRG00005000630) ##19	YLPM1 (ENSCDRG00005000671) #20	ENSCDRG00005000746 #21	DLST (ENSCDRG00005000759) #22	RPS6KL1 (ENSCDRG00005000787) #23	PGF (ENSCDRG00005000818) #24	EIF2B2 (ENSCDRG00005000865) #25	MLH3 (ENSCDRG00005000924) #26	ENSCDRG00005001055 #27	ZC2HC1C (ENSCDRG00005001075) #28	NEK9 (ENSCDRG00005001099) #29	ENSCDRG00005001147 #30	FOS (ENSCDRG00005001172) #31	JDP2 (ENSCDRG00005001197) #32	BATF (ENSCDRG00005001210) #34	FLVCR2 (ENSCDRG00005001225) #35	ERG28 (ENSCDRG00005001259) #36	TTLL5 (ENSCDRG00005001293) #37	TGFB3 (ENSCDRG00005001558)
Alpaca	MODERN SPECIES	72											AREL1 (ENSVPAG00000003059) #18	ENSVPAG00000003063	FCF1 (ENSVPAG00000003066) ##19	YLPM1 (ENSVPAG00000003067) #20	PROX2 (ENSVPAG00000003072) #21	DLST (ENSVPAG00000003074) #22	RPS6KL1 (ENSVPAG00000003077) #23	ENSVPAG00000003079 #24	EIF2B2 (ENSVPAG00000003082) #25	MLH3 (ENSVPAG00000003084) #26	ENSVPAG00000003085 #27	ZC2HC1C (ENSVPAG00000003086) #28	NEK9 (ENSVPAG00000003088) #29	TMED10 (ENSVPAG00000003089) #30	JDP2 (ENSVPAG00000003090) #32	BATF (ENSVPAG00000003093) #34	FLVCR2 (ENSVPAG00000003094) #35	ENSVPAG00000003095	TTLL5 (ENSVPAG00000003096) #37	ENSVPAG00000003099	GPATCH2L (ENSVPAG00000003100)
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.a ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925.c.a #36	ENSGT00940000162939 #37	ENSGT00940000155747
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.a ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925.c.a #36	ENSGT00940000162939 #37	ENSGT00940000155747
Bovidae	ANCESTRAL SPECIES	7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00990000210987	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.a ##19	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f.e.a #35	ENSGT00390000010925.d #36	ENSGT00940000162939 #37	ENSGT00940000155747
Caprinae	ANCESTRAL SPECIES	11	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00990000210987	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00390000010172.y	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f.e.a #35	ENSGT01030000234625.B.d.f.e.b #35	ENSGT00390000010925.c.a #36
Rambouillet Sheep	MODERN SPECIES	23	ALDH6A1 (ENSOARG00020014015) #7	LIN52 (ENSOARG00020014138) #9	VSX2 (ENSOARG00020014208) #11	ABCD4 (ENSOARG00020014282) #12	VRTN (ENSOARG00020014385) #13	SYNDIG1L (ENSOARG00020014401) #14	NPC2 (ENSOARG00020014455) #15	ISCA2 (ENSOARG00020014514) #16	LTBP2 (ENSOARG00020014686) #17	ENSOARG00020015656	ENSOARG00020015685	AREL1 (ENSOARG00020015742) #18	FCF1 (ENSOARG00020015954) ##19	YLPM1 (ENSOARG00020016026) #20	ENSOARG00020016649 #21	DLST (ENSOARG00020016709) #22	RPS6KL1 (ENSOARG00020016765) #23	PGF (ENSOARG00020016856) #24	ENSOARG00020017002	EIF2B2 (ENSOARG00020017031) #25	ENSOARG00020017721 #27	ZC2HC1C (ENSOARG00020017806) #28	NEK9 (ENSOARG00020017867) #29	NEK9 (ENSOARG00020018089) #30	ENSOARG00020018134	FOS (ENSOARG00020018165) #31	JDP2 (ENSOARG00020018321) #32	BATF (ENSOARG00020018372) #34	ENSOARG00020018404 #36	ENSOARG00020018452 #36	ENSOARG00020018534 #36
Goat	MODERN SPECIES	1	BBOF1 (ENSCHIG00000009138)	ALDH6A1 (ENSCHIG00000011927) #7	LIN52 (ENSCHIG00000024176) #9	VSX2 (ENSCHIG00000015233) #11	ABCD4 (ENSCHIG00000017269) #12	VRTN (ENSCHIG00000022707) #13	SYNDIG1L (ENSCHIG00000019047) #14	NPC2 (ENSCHIG00000019346) #15	ISCA2 (ENSCHIG00000006650) #16	LTBP2 (ENSCHIG00000008338) #17	ENSCHIG00000021080	AREL1 (ENSCHIG00000023661) #18	FCF1 (ENSCHIG00000012196) #19	YLPM1 (ENSCHIG00000016765) #20	PROX2 (ENSCHIG00000010770) #21	DLST (ENSCHIG00000015687) #22	RPS6KL1 (ENSCHIG00000016739) #23	PGF (ENSCHIG00000021989) #24	ENSCHIG00000007844	EIF2B2 (ENSCHIG00000020696) #25	MLH3 (ENSCHIG00000009803) #26	ENSCHIG00000021853 #27	ZC2HC1C (ENSCHIG00000025982) #28	NEK9 (ENSCHIG00000022547) #29	TMED10 (ENSCHIG00000022468) #30	FOS (ENSCHIG00000025384) #31	JDP2 (ENSCHIG00000017157) #32	BATF (ENSCHIG00000009266) #34	ENSCHIG00000019256 #35	ENSCHIG00000013593 #36	ENSCHIG00000025043 #36
Bovinae	ANCESTRAL SPECIES	11	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00990000210987	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.a ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f.e.a #35	ENSGT00390000010925.d #36	ENSGT01030000234625.B.d.e.a #35	ENSGT00390000010925.c.b.a.a #36
Bos	ANCESTRAL SPECIES	13	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00990000210987	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.a ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f.e.a #35	ENSGT01030000234625.B.d.e.a #35	ENSGT00390000010925.c.b.a.a #36	ENSGT00940000162939 #37
Bos_b	ANCESTRAL SPECIES	11	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.a ##19	ENSGT00940000153117.B.c.b ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f.e.a #35	ENSGT01030000234625.B.d.f.e.b #35	ENSGT00940000162939 #37	ENSGT00390000010925.c.a #36
Hybrid Bos Indicus	MODERN SPECIES	1	ALDH6A1 (ENSBIXG00005026295) #7	LIN52 (ENSBIXG00005026222) #9	VSX2 (ENSBIXG00005026200) #11	ABCD4 (ENSBIXG00005026163) #12	VRTN (ENSBIXG00005026108) #13	SYNDIG1L (ENSBIXG00005026092) #14	NPC2 (ENSBIXG00005026057) #15	ENSBIXG00005026039 #16	LTBP2 (ENSBIXG00005025977) #17	ENSBIXG00005025782	AREL1 (ENSBIXG00005006183) #18	ENSBIXG00005025743	ENSBIXG00005004386 ##19	YLPM1 (ENSBIXG00005025680) #20	ENSBIXG00005025629 #21	DLST (ENSBIXG00005007402) #22	RPS6KL1 (ENSBIXG00005025559) #23	PGF (ENSBIXG00005025480) #24	EIF2B2 (ENSBIXG00005025394) #25	MLH3 (ENSBIXG00005025342) #26	ENSBIXG00005025275 #27	ZC2HC1C (ENSBIXG00005025227) #28	NEK9 (ENSBIXG00005025200) #29	TMED10 (ENSBIXG00005025171) #30	FOS (ENSBIXG00005025139) #31	JDP2 (ENSBIXG00005025082) #32	ENSBIXG00005025026	BATF (ENSBIXG00005025002) #34	ENSBIXG00005024965 #35	ENSBIXG00005024804 #35	ENSBIXG00005024769
Cow	MODERN SPECIES	1	ENSBTAG00000053938	ALDH6A1 (ENSBTAG00000018469) #7	LIN52 (ENSBTAG00000030557) #9	VSX2 (ENSBTAG00000014632) #11	ABCD4 (ENSBTAG00000014633) #12	VRTN (ENSBTAG00000005774) #13	SYNDIG1L (ENSBTAG00000052950) #14	NPC2 (ENSBTAG00000021955) #15	ISCA2 (ENSBTAG00000021956) #16	LTBP2 (ENSBTAG00000021957) #17	ENSBTAG00000050205	AREL1 (ENSBTAG00000020379) #18	FCF1 (ENSBTAG00000020381) ##19	YLPM1 (ENSBTAG00000008287) #20	PROX2 (ENSBTAG00000015052) #21	DLST (ENSBTAG00000006463) #22	RPS6KL1 (ENSBTAG00000006688) #23	PGF (ENSBTAG00000013688) #24	EIF2B2 (ENSBTAG00000008664) #25	MLH3 (ENSBTAG00000019279) #26	ACYP1 (ENSBTAG00000013992) #27	ZC2HC1C (ENSBTAG00000013983) #28	NEK9 (ENSBTAG00000016612) #29	TMED10 (ENSBTAG00000005694) #30	FOS (ENSBTAG00000004322) #31	JDP2 (ENSBTAG00000009451) #32	BATF (ENSBTAG00000025405) #34	FLVCR2 (ENSBTAG00000040078) #35	ENSBTAG00000011985 #35	ERG28 (ENSBTAG00000011987) #36	TTLL5 (ENSBTAG00000025403)
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00990000210987	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.e.a #35	ENSGT00390000010925.c.b.a.a #36	ENSGT00390000010925.c.a #36	ENSGT00940000162939 #37
Domestic yak	MODERN SPECIES	2	LIN52 (ENSBGRG00000006226) #9	VSX2 (ENSBGRG00000006307) #11	ABCD4 (ENSBGRG00000006381) #12	VRTN (ENSBGRG00000006578) #13	SYNDIG1L (ENSBGRG00000006594) #14	NPC2 (ENSBGRG00000006618) #15	ISCA2 (ENSBGRG00000006642) #16	LTBP2 (ENSBGRG00000006692) #17	ENSBGRG00000006766	ENSBGRG00000006783	AREL1 (ENSBGRG00000006814) #18	ENSBGRG00000006917 #19	YLPM1 (ENSBGRG00000007101) #20	ENSBGRG00000007592 #21	ENSBGRG00000007645	DLST (ENSBGRG00000007671) #22	RPS6KL1 (ENSBGRG00000007964) #23	PGF (ENSBGRG00000008113) #24	EIF2B2 (ENSBGRG00000008344) #25	MLH3 (ENSBGRG00000008456) #26	ENSBGRG00000008858 #27	ZC2HC1C (ENSBGRG00000008922) #28	NEK9 (ENSBGRG00000008973) #29	TMED10 (ENSBGRG00000009052) #30	FOS (ENSBGRG00000009096) #31	JDP2 (ENSBGRG00000009251) #32	ENSBGRG00000009350 #34	ENSBGRG00000009398	ENSBGRG00000009425 #35	ERG28 (ENSBGRG00000009468) #36	TTLL5 (ENSBGRG00000009576) #37
Wild yak	MODERN SPECIES	1230					VSX2 (ENSBMUG00000007282) #11	ABCD4 (ENSBMUG00000007298) #12	SYNDIG1L (ENSBMUG00000007323) #14	NPC2 (ENSBMUG00000007338) #15	ISCA2 (ENSBMUG00000007353) #16	LTBP2 (ENSBMUG00000007454) #17	ENSBMUG00000007472	AREL1 (ENSBMUG00000007478) #18	ENSBMUG00000007493 ##19	YLPM1 (ENSBMUG00000007507) #20	ENSBMUG00000007517 #21	DLST (ENSBMUG00000007522) #22	RPS6KL1 (ENSBMUG00000007535) #23	PGF (ENSBMUG00000007539) #24	EIF2B2 (ENSBMUG00000007544) #25	MLH3 (ENSBMUG00000007555) #26	ENSBMUG00000007560 #27	ZC2HC1C (ENSBMUG00000007566) #28	NEK9 (ENSBMUG00000007574) #29	TMED10 (ENSBMUG00000007579) #30	FOS (ENSBMUG00000007590) #31	JDP2 (ENSBMUG00000007601) #32	BATF (ENSBMUG00000007615) #34
American bison	MODERN SPECIES	3282	BBOF1 (ENSBBBG00000003080)	ALDH6A1 (ENSBBBG00000003099) #7	LIN52 (ENSBBBG00000003104) #9	VSX2 (ENSBBBG00000014020) #11	ABCD4 (ENSBBBG00000003123) #12	VRTN (ENSBBBG00000003129) #13	SYNDIG1L (ENSBBBG00000014055) #14	NPC2 (ENSBBBG00000014061) #15	ISCA2 (ENSBBBG00000014070) #16	LTBP2 (ENSBBBG00000003189) #17	AREL1 (ENSBBBG00000003202) #18	ENSBBBG00000014171 ##19	YLPM1 (ENSBBBG00000014199) #20	PROX2 (ENSBBBG00000002886) #21	ENSBBBG00000014217	DLST (ENSBBBG00000003225) #22	PGF (ENSBBBG00000014283) #24	EIF2B2 (ENSBBBG00000003247) #25	MLH3 (ENSBBBG00000014333) #26	ENSBBBG00000014347 #27	ZC2HC1C (ENSBBBG00000014352) #28	NEK9 (ENSBBBG00000014365) #29	TMED10 (ENSBBBG00000014371) #30	FOS (ENSBBBG00000014386) #31	JDP2 (ENSBBBG00000001407) #32	BATF (ENSBBBG00000014403) #34	ENSBBBG00000014424 #35	ENSBBBG00000014438 #36
Siberian musk deer	MODERN SPECIES	260	BBOF1 (ENSMMSG00000021217)	ALDH6A1 (ENSMMSG00000021323) #7	LIN52 (ENSMMSG00000021369) #9	VSX2 (ENSMMSG00000021411) #11	ABCD4 (ENSMMSG00000021448) #12	VRTN (ENSMMSG00000021493) #13	SYNDIG1L (ENSMMSG00000021508) #14	NPC2 (ENSMMSG00000021533) #15	ISCA2 (ENSMMSG00000021564) #16	LTBP2 (ENSMMSG00000021618) #17	ENSMMSG00000021702	AREL1 (ENSMMSG00000021715) #18	FCF1 (ENSMMSG00000021755) ##19	YLPM1 (ENSMMSG00000021806) #20	ENSMMSG00000021897 #21	DLST (ENSMMSG00000021926) #22	RPS6KL1 (ENSMMSG00000021985) #23	PGF (ENSMMSG00000022015) #24	EIF2B2 (ENSMMSG00000022041) #25	MLH3 (ENSMMSG00000022075) #26	ZC2HC1C (ENSMMSG00000022215) #28	NEK9 (ENSMMSG00000022235) #29	ENSMMSG00000022285	TMED10 (ENSMMSG00000022295) #30	FOS (ENSMMSG00000022311) #31	JDP2 (ENSMMSG00000022346) #32	BATF (ENSMMSG00000022368) #34	FLVCR2 (ENSMMSG00000022392) #35	ENSMMSG00000022462 #36	ENSMMSG00000022474	ENSMMSG00000004476 #36
Yarkand deer	MODERN SPECIES	3	ALDH6A1 (ENSCHYG00000023203) #7	LIN52 (ENSCHYG00000023413) #9	ENSCHYG00000023471	VSX2 (ENSCHYG00000023493) #11	ABCD4 (ENSCHYG00000023537) #12	VRTN (ENSCHYG00000023697) #13	SYNDIG1L (ENSCHYG00000023714) #14	ENSCHYG00000004570 #15	ISCA2 (ENSCHYG00000004587) #16	LTBP2 (ENSCHYG00000005208) #17	ENSCHYG00000005614	AREL1 (ENSCHYG00000005628) #18	FCF1 (ENSCHYG00000005712) ##19	YLPM1 (ENSCHYG00000005805) #20	PROX2 (ENSCHYG00000006125) #21	DLST (ENSCHYG00000006173) #22	RPS6KL1 (ENSCHYG00000006336) #23	ENSCHYG00000006497 #24	EIF2B2 (ENSCHYG00000006598) #25	MLH3 (ENSCHYG00000006695) #26	ZC2HC1C (ENSCHYG00000006886) #28	NEK9 (ENSCHYG00000006917) #29	TMED10 (ENSCHYG00000007018) #30	FOS (ENSCHYG00000007069) #31	ENSCHYG00000007218	JDP2 (ENSCHYG00000007237) #32	BATF (ENSCHYG00000007278) #34	ENSCHYG00000007326 #35	ENSCHYG00000007628 #35	ENSCHYG00000007651 #36	TTLL5 (ENSCHYG00000007731) #37
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223.p #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000158980.b	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36
Blue whale	MODERN SPECIES	11	ENTPD5 (ENSBMSG00010006501)	BBOF1 (ENSBMSG00010006525)	ENSBMSG00010006546	LIN52 (ENSBMSG00010006623) #9	VSX2 (ENSBMSG00010006660) #11	ABCD4 (ENSBMSG00010006684) #12	SYNDIG1L (ENSBMSG00010006725) #14	ENSBMSG00010006750 #15	ISCA2 (ENSBMSG00010006777) #16	LTBP2 (ENSBMSG00010006856) #17	AREL1 (ENSBMSG00010006958) #18	ENSBMSG00010006980 #19	ENSBMSG00010006988	YLPM1 (ENSBMSG00010007012) #20	ENSBMSG00010007040 #21	DLST (ENSBMSG00010007068) #22	RPS6KL1 (ENSBMSG00010007119) #23	PGF (ENSBMSG00010007155) #24	EIF2B2 (ENSBMSG00010007177) #25	MLH3 (ENSBMSG00010007225) #26	ENSBMSG00010007280 #27	ZC2HC1C (ENSBMSG00010007296) #28	NEK9 (ENSBMSG00010007311) #29	TMED10 (ENSBMSG00010007334) #30	ENSBMSG00010007349	FOS (ENSBMSG00010007361) #31	JDP2 (ENSBMSG00010007385) #32	FLVCR2 (ENSBMSG00010007550) #35	ENSBMSG00010007570	ERG28 (ENSBMSG00010007579) #36	TTLL5 (ENSBMSG00010007632) #37
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000008092.a.k.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223.p #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000158980.b	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36
Sperm whale	MODERN SPECIES	2	ENSPCTG00005022468	ALDH6A1 (ENSPCTG00005022500) #7	LIN52 (ENSPCTG00005022555) #9	VSX2 (ENSPCTG00005022587) #11	ABCD4 (ENSPCTG00005022592) #12	VRTN (ENSPCTG00005022596) #13	SYNDIG1L (ENSPCTG00005022606) #14	NPC2 (ENSPCTG00005022616) #15	ISCA2 (ENSPCTG00005022629) #16	LTBP2 (ENSPCTG00005022652) #17	ENSPCTG00005022671	AREL1 (ENSPCTG00005022673) #18	FCF1 (ENSPCTG00005022674) ##19	YLPM1 (ENSPCTG00005022679) #20	ENSPCTG00005022683 #21	DLST (ENSPCTG00005022685) #22	ENSPCTG00005022692 #23	PGF (ENSPCTG00005022697) #24	EIF2B2 (ENSPCTG00005022702) #25	ACYP1 (ENSPCTG00005022706) #26	ZC2HC1C (ENSPCTG00005022709) #28	TMED10 (ENSPCTG00005022711) #29	ENSPCTG00005022712 #32	BATF (ENSPCTG00005022713) #34	FLVCR2 (ENSPCTG00005022714) #35	ERG28 (ENSPCTG00005022716) #36	TTLL5 (ENSPCTG00005022718) #37	ENSPCTG00005022725	GPATCH2L (ENSPCTG00005022727)	IFT43 (ENSPCTG00005022728)	ENSPCTG00005022729
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000008092.a.k.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223.p #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000158980.b	ENSGT00940000159276 #31	ENSGT00990000207089	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36
Dolphin	MODERN SPECIES	25														YLPM1 (ENSTTRG00000001907) #20	PROX2 (ENSTTRG00000001912) #21	DLST (ENSTTRG00000001915) #22	RPS6KL1 (ENSTTRG00000001917) #23	PGF (ENSTTRG00000001918) #24	EIF2B2 (ENSTTRG00000001921) #25	MLH3 (ENSTTRG00000001923) #26	ACYP1 (ENSTTRG00000001925) #27	ZC2HC1C (ENSTTRG00000001926) #28	NEK9 (ENSTTRG00000001928) #29
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00390000008092.a.k.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223.p #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000158980.b	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00940000157848.e.b	ENSGT00390000010925 #36
Vaquita	MODERN SPECIES	11	ENSPSNG00000017159	ALDH6A1 (ENSPSNG00000017217) #7	LIN52 (ENSPSNG00000017321) #9	VSX2 (ENSPSNG00000017375) #11	ABCD4 (ENSPSNG00000017443) #12	VRTN (ENSPSNG00000017561) #13	SYNDIG1L (ENSPSNG00000017585) #14	ENSPSNG00000017639 #15	ENSPSNG00000017665	LTBP2 (ENSPSNG00000017786) #17	ENSPSNG00000017877	AREL1 (ENSPSNG00000017910) #18	FCF1 (ENSPSNG00000017954) #19	YLPM1 (ENSPSNG00000009718) #20	ENSPSNG00000009885 #21	DLST (ENSPSNG00000009959) #22	RPS6KL1 (ENSPSNG00000010039) #23	PGF (ENSPSNG00000010102) #24	EIF2B2 (ENSPSNG00000010274) #25	MLH3 (ENSPSNG00000010427) #26	ENSPSNG00000010828 #27	ZC2HC1C (ENSPSNG00000010910) #28	NEK9 (ENSPSNG00000010998) #29	TMED10 (ENSPSNG00000011085) #30	ENSPSNG00000011136	FOS (ENSPSNG00000011265) #31	JDP2 (ENSPSNG00000011391) #32	BATF (ENSPSNG00000011426) #34	FLVCR2 (ENSPSNG00000011492) #35	ENSPSNG00000011652	ENSPSNG00000011740 #36
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223.p #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00390000013771.d	ENSGT00910000147973	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000158980.b	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00940000157848.e.b	ENSGT00390000010925 #36
Narwhal	MODERN SPECIES	308	ALDH6A1 (ENSMMNG00015015950) #7	LIN52 (ENSMMNG00015015990) #9	VSX2 (ENSMMNG00015016032) #11	ABCD4 (ENSMMNG00015016106) #12	VRTN (ENSMMNG00015016199) #13	SYNDIG1L (ENSMMNG00015016210) #14	ENSMMNG00015016236 #15	ISCA2 (ENSMMNG00015016275) #16	LTBP2 (ENSMMNG00015016409) #17	ENSMMNG00015016679	AREL1 (ENSMMNG00015016706) #18	FCF1 (ENSMMNG00015016775) #19	ENSMMNG00015016846	YLPM1 (ENSMMNG00015016889) #20	ENSMMNG00015016949 #21	DLST (ENSMMNG00015016974) #22	RPS6KL1 (ENSMMNG00015017009) #23	PGF (ENSMMNG00015017047) #24	EIF2B2 (ENSMMNG00015017142) #25	MLH3 (ENSMMNG00015017206) #26	ENSMMNG00015017395 #27	ZC2HC1C (ENSMMNG00015017432) #28	NEK9 (ENSMMNG00015017473) #29	TMED10 (ENSMMNG00015017595) #30	ENSMMNG00015017621	FOS (ENSMMNG00015017653) #31	JDP2 (ENSMMNG00015017702) #32	BATF (ENSMMNG00015017732) #34	FLVCR2 (ENSMMNG00015017770) #35	ENSMMNG00015017843	ERG28 (ENSMMNG00015017871) #36
Beluga whale	MODERN SPECIES	24	ENSDLEG00000004670	VSX2 (ENSDLEG00000004663) #11	ABCD4 (ENSDLEG00000004639) #12	VRTN (ENSDLEG00000004633) #13	SYNDIG1L (ENSDLEG00000004630) #14	NPC2 (ENSDLEG00000004626) #15	ISCA2 (ENSDLEG00000004621) #16	ENSDLEG00000004618 #17	ENSDLEG00000004617	ENSDLEG00000004614	ENSDLEG00000004609	AREL1 (ENSDLEG00000004596) #18	FCF1 (ENSDLEG00000004582) #19	YLPM1 (ENSDLEG00000004568) #20	PROX2 (ENSDLEG00000004556) #21	DLST (ENSDLEG00000004541) #22	RPS6KL1 (ENSDLEG00000004528) #23	PGF (ENSDLEG00000004519) #24	EIF2B2 (ENSDLEG00000004507) #25	MLH3 (ENSDLEG00000004489) #26	ACYP1 (ENSDLEG00000004481) #27	ZC2HC1C (ENSDLEG00000004476) #28	NEK9 (ENSDLEG00000004467) #29	TMED10 (ENSDLEG00000004453) #30	FOS (ENSDLEG00000004446) #31	JDP2 (ENSDLEG00000004438) #32	BATF (ENSDLEG00000004433) #34	ENSDLEG00000004427	FLVCR2 (ENSDLEG00000004419) #35	ENSDLEG00000004414 #36	TTLL5 (ENSDLEG00000004346) #37
Suina	ANCESTRAL SPECIES	24	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00900000143158	ENSGT00940000156723 #18	ENSGT00940000153117.B.c.a ##19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.f #35	ENSGT00390000010925 #36	ENSGT00940000162939 #37	ENSGT00940000155747
Chacoan peccary	MODERN SPECIES	885	BBOF1 (ENSCWAG00000020575)	ALDH6A1 (ENSCWAG00000020593) #7	LIN52 (ENSCWAG00000020608) #9	VSX2 (ENSCWAG00000020616) #11	ABCD4 (ENSCWAG00000020632) #12	VRTN (ENSCWAG00000020682) #13	SYNDIG1L (ENSCWAG00000020686) #14	NPC2 (ENSCWAG00000020691) #15	ENSCWAG00000020697 #16	LTBP2 (ENSCWAG00000020735) #17	ENSCWAG00000020814	AREL1 (ENSCWAG00000020824) #18	FCF1 (ENSCWAG00000020846) ##19	YLPM1 (ENSCWAG00000020891) #20	ENSCWAG00000020923 #21	DLST (ENSCWAG00000020938) #22	RPS6KL1 (ENSCWAG00000020956) #23	PGF (ENSCWAG00000020978) #24	EIF2B2 (ENSCWAG00000021011) #25	MLH3 (ENSCWAG00000021039) #26	ENSCWAG00000021059 #27	ENSCWAG00000021069 #28	NEK9 (ENSCWAG00000021083) #29	TMED10 (ENSCWAG00000021099) #30	FOS (ENSCWAG00000021112) #31	JDP2 (ENSCWAG00000021133) #32	BATF (ENSCWAG00000021146) #34	FLVCR2 (ENSCWAG00000021161) #35	ERG28 (ENSCWAG00000021179) #36	TTLL5 (ENSCWAG00000021198) #37	TGFB3 (ENSCWAG00000021233)
Pig	MODERN SPECIES	15	BBOF1 (ENSSSCG00000002356)	ALDH6A1 (ENSSSCG00000002357) #7	LIN52 (ENSSSCG00000055314) #9	VSX2 (ENSSSCG00000002363) #11	ABCD4 (ENSSSCG00000038231) #12	VRTN (ENSSSCG00000002361) #13	SYNDIG1L (ENSSSCG00000025000) #14	NPC2 (ENSSSCG00000002366) #15	ISCA2 (ENSSSCG00000002367) #16	LTBP2 (ENSSSCG00000002368) #17	ENSSSCG00000031305	AREL1 (ENSSSCG00000002370) #18	FCF1 (ENSSSCG00000039202) ##19	YLPM1 (ENSSSCG00000002372) #20	PROX2 (ENSSSCG00000002373) #21	DLST (ENSSSCG00000002374) #22	RPS6KL1 (ENSSSCG00000002375) #23	PGF (ENSSSCG00000050616) #24	EIF2B2 (ENSSSCG00000002377) #25	ENSSSCG00000051291	MLH3 (ENSSSCG00000002378) #26	ENSSSCG00000002379 #27	ZC2HC1C (ENSSSCG00000002380) #28	NEK9 (ENSSSCG00000002381) #29	TMED10 (ENSSSCG00000035684) #30	FOS (ENSSSCG00000002383) #31	JDP2 (ENSSSCG00000035895) #32	BATF (ENSSSCG00000055470) #34	FLVCR2 (ENSSSCG00000021606) #35	ERG28 (ENSSSCG00000036494) #36	TTLL5 (ENSSSCG00000025984) #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00930000151014 #22
Hedgehog	MODERN SPECIES	2051																DLST (ENSEEUG00000005769) #22
Common shrew	MODERN SPECIES	1455																DLST (ENSSARG00000004980) #22
Atlantogenata	ANCESTRAL SPECIES	8	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Afrotheria	ANCESTRAL SPECIES	6	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Tenrec	MODERN SPECIES	1947													AREL1 (ENSETEG00000009057) #18	FCF1 (ENSETEG00000009062) #19	YLPM1 (ENSETEG00000009066) #20	DLST (ENSETEG00000009071) #22
Afrotheria_a	ANCESTRAL SPECIES	6	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B.d #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Elephant	MODERN SPECIES	602	ENTPD5 (ENSLAFG00000010902)	BBOF1 (ENSLAFG00000002530)	ALDH6A1 (ENSLAFG00000002533) #7	LIN52 (ENSLAFG00000002534) #9	VSX2 (ENSLAFG00000002863) #11	ABCD4 (ENSLAFG00000002865) #12	VRTN (ENSLAFG00000026239) #13	SYNDIG1L (ENSLAFG00000004416) #14	NPC2 (ENSLAFG00000002876) #15	ISCA2 (ENSLAFG00000001607) #16	LTBP2 (ENSLAFG00000001609) #17	AREL1 (ENSLAFG00000002793) #18	ENSLAFG00000000724 #19	YLPM1 (ENSLAFG00000012536) #20	PROX2 (ENSLAFG00000012545) #21	DLST (ENSLAFG00000012552) #22	RPS6KL1 (ENSLAFG00000032632) #23	PGF (ENSLAFG00000016611) #24	EIF2B2 (ENSLAFG00000016616) #25	MLH3 (ENSLAFG00000022310) #26	ENSLAFG00000016628 #27	ZC2HC1C (ENSLAFG00000023104) #28	NEK9 (ENSLAFG00000013150) #29	TMED10 (ENSLAFG00000022769) #30	FOS (ENSLAFG00000029435) #31	JDP2 (ENSLAFG00000025757) #32	BATF (ENSLAFG00000011315) #34	FLVCR2 (ENSLAFG00000014461) #35	ERG28 (ENSLAFG00000004755) #36	TTLL5 (ENSLAFG00000007694) #37	TGFB3 (ENSLAFG00000022584)
Hyrax	MODERN SPECIES	1571														YLPM1 (ENSPCAG00000006232) #20	PROX2 (ENSPCAG00000006424) #21	DLST (ENSPCAG00000006509) #22	ENSPCAG00000006580 #23
Xenarthra	ANCESTRAL SPECIES	20	ENSGT00390000015152	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00530000064848	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Sloth	MODERN SPECIES	1768																ENSCHOG00000007501 #22
Armadillo	MODERN SPECIES	1229	COQ6 (ENSDNOG00000015448)	ENTPD5 (ENSDNOG00000039070)	BBOF1 (ENSDNOG00000024781)	ALDH6A1 (ENSDNOG00000024213) #7	LIN52 (ENSDNOG00000038226) #9	VSX2 (ENSDNOG00000005036) #11	ENSDNOG00000032858	ABCD4 (ENSDNOG00000008122) #12	SYNDIG1L (ENSDNOG00000032053) #14	ENSDNOG00000016210 #15	ISCA2 (ENSDNOG00000034125) #16	LTBP2 (ENSDNOG00000016211) #17	AREL1 (ENSDNOG00000003340) #18	YLPM1 (ENSDNOG00000039154) #20	PROX2 (ENSDNOG00000005528) #21	DLST (ENSDNOG00000033083) #22	RPS6KL1 (ENSDNOG00000045055) #23	PGF (ENSDNOG00000042336) #24	EIF2B2 (ENSDNOG00000032838) #25	MLH3 (ENSDNOG00000048962) #26	ENSDNOG00000047029 #27	ZC2HC1C (ENSDNOG00000046626) #28	NEK9 (ENSDNOG00000001965) #29	TMED10 (ENSDNOG00000019851) #30	FOS (ENSDNOG00000031516) #31	ENSDNOG00000038922	JDP2 (ENSDNOG00000033141) #32	BATF (ENSDNOG00000047121) #34	FLVCR2 (ENSDNOG00000034014) #35	ERG28 (ENSDNOG00000017697) #36	ENSDNOG00000004904
Marsupialia	ANCESTRAL SPECIES		ENSGT01040000244584	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Marsupialia_b	ANCESTRAL SPECIES		ENSGT01040000244584	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Diprotodontia	ANCESTRAL SPECIES		ENSGT01040000244584	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000155070	ENSGT00940000162651	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008992.b	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000006223 #15	ENSGT00390000005700 #16	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Common wonbat	MODERN SPECIES	1131	ENSVURG00010018393	ALDH6A1 (ENSVURG00010018373) #7	ENSVURG00010018361	LIN52 (ENSVURG00010018345) #9	VSX2 (ENSVURG00010018334) #11	ABCD4 (ENSVURG00010018325) #12	VRTN (ENSVURG00010018318) #13	SYNDIG1L (ENSVURG00010018306) #14	NPC2 (ENSVURG00010018300) #15	ENSVURG00010018290 #16	LTBP2 (ENSVURG00010018263) #17	AREL1 (ENSVURG00010018228) #18	FCF1 (ENSVURG00010018218) #19	YLPM1 (ENSVURG00010018201) #20	ENSVURG00010018192 #21	DLST (ENSVURG00010018183) #22	RPS6KL1 (ENSVURG00010018173) #23	PGF (ENSVURG00010018167) #24	EIF2B2 (ENSVURG00010018164) #25	MLH3 (ENSVURG00010018146) #26	ENSVURG00010018133 #27	ENSVURG00010018132 #28	NEK9 (ENSVURG00010018126) #29	TMED10 (ENSVURG00010018116) #30	FOS (ENSVURG00010018097) #31	JDP2 (ENSVURG00010018087) #32	ENSVURG00010018078	BATF (ENSVURG00010018071) #34	FLVCR2 (ENSVURG00010018065) #35	TTLL5 (ENSVURG00010016488) #37	ENSVURG00010016321
koala	MODERN SPECIES	24	BBOF1 (ENSPCIG00000015946)	ALDH6A1 (ENSPCIG00000010683) #7	ENSPCIG00000010654	LIN52 (ENSPCIG00000034115) #9	VSX2 (ENSPCIG00000010627) #11	ABCD4 (ENSPCIG00000010614) #12	VRTN (ENSPCIG00000008700) #13	SYNDIG1L (ENSPCIG00000008703) #14	ENSPCIG00000008706 #15	ENSPCIG00000033435 #16	LTBP2 (ENSPCIG00000008717) #17	AREL1 (ENSPCIG00000008724) #18	FCF1 (ENSPCIG00000008728) #19	YLPM1 (ENSPCIG00000008730) #20	ENSPCIG00000008736 #21	DLST (ENSPCIG00000008737) #22	RPS6KL1 (ENSPCIG00000008738) #23	PGF (ENSPCIG00000008740) #24	EIF2B2 (ENSPCIG00000008741) #25	MLH3 (ENSPCIG00000036351) #26	ENSPCIG00000008743 #27	ENSPCIG00000008744 #28	NEK9 (ENSPCIG00000008745) #29	TMED10 (ENSPCIG00000008746) #30	FOS (ENSPCIG00000008747) #31	JDP2 (ENSPCIG00000030932) #32	BATF (ENSPCIG00000002791) #34	FLVCR2 (ENSPCIG00000002780) #35	ERG28 (ENSPCIG00000002771) #36	ENSPCIG00000002659	TGFB3 (ENSPCIG00000002617)
Wallaby	MODERN SPECIES	2821																DLST (ENSMEUG00000004563) #22
Tasmanian devil	MODERN SPECIES	1	ENTPD5 (ENSSHAG00000022376)	BBOF1 (ENSSHAG00000018550)	ALDH6A1 (ENSSHAG00000018886) #7	LIN52 (ENSSHAG00000021401) #9	VSX2 (ENSSHAG00000028523) #11	ABCD4 (ENSSHAG00000018805) #12	VRTN (ENSSHAG00000021665) #13	SYNDIG1L (ENSSHAG00000018764) #14	ENSSHAG00000018714 #15	ISCA2 (ENSSHAG00000025770) #16	LTBP2 (ENSSHAG00000018569) #17	AREL1 (ENSSHAG00000018445) #18	FCF1 (ENSSHAG00000018398) #19	ENSSHAG00000018304 #21	YLPM1 (ENSSHAG00000018328) #20	DLST (ENSSHAG00000031624) #22	RPS6KL1 (ENSSHAG00000027019) #23	PGF (ENSSHAG00000029245) #24	EIF2B2 (ENSSHAG00000023868) #25	MLH3 (ENSSHAG00000018012) #26	ENSSHAG00000029322 #27	ENSSHAG00000017992 #28	NEK9 (ENSSHAG00000017943) #29	TMED10 (ENSSHAG00000028092) #30	FOS (ENSSHAG00000017780) #31	JDP2 (ENSSHAG00000025173) #32	ENSSHAG00000029697	BATF (ENSSHAG00000023550) #34	FLVCR2 (ENSSHAG00000016893) #35	ERG28 (ENSSHAG00000020554) #36	ENSSHAG00000016129
Opossum	MODERN SPECIES		BBOF1 (ENSMODG00000006384)	ALDH6A1 (ENSMODG00000006429) #7	LIN52 (ENSMODG00000006397) #9	VSX2 (ENSMODG00000006374) #11	ABCD4 (ENSMODG00000006369) #12	VRTN (ENSMODG00000006340) #13	ENSMODG00000024016 #14	ENSMODG00000006270 #15	ISCA2 (ENSMODG00000006248) #16	LTBP2 (ENSMODG00000006244) #17	ENSMODG00000029071	AREL1 (ENSMODG00000006202) #18	FCF1 (ENSMODG00000006179) #19	YLPM1 (ENSMODG00000006168) #20	ENSMODG00000006137 #21	DLST (ENSMODG00000006129) #22	RPS6KL1 (ENSMODG00000006093) #23	ENSMODG00000006071 #24	ENSMODG00000006061 #25	MLH3 (ENSMODG00000006037) #26	ENSMODG00000006014 #27	ENSMODG00000006002 #28	NEK9 (ENSMODG00000005989) #29	TMED10 (ENSMODG00000005949) #30	FOS (ENSMODG00000005927) #31	ENSMODG00000041453	JDP2 (ENSMODG00000051073) #32	ENSMODG00000049733	BATF (ENSMODG00000005905) #34	ENSMODG00000005902	ENSMODG00000047729
Platypus	MODERN SPECIES		ENSOANG00000049648	PTGR2 (ENSOANG00000048501)	ZNF410 (ENSOANG00000040286)	COQ6 (ENSOANG00000040258)	BBOF1 (ENSOANG00000008768)	ALDH6A1 (ENSOANG00000043355) #7	LIN52 (ENSOANG00000048133) #9	ABCD4 (ENSOANG00000045221) #12	ENSOANG00000042721 #15	ENSOANG00000036503	ENSOANG00000051080 #17	AREL1 (ENSOANG00000002627) #18	FCF1 (ENSOANG00000039099) #19	YLPM1 (ENSOANG00000009814) #20	ENSOANG00000009815 #21	DLST (ENSOANG00000039815) #22	RPS6KL1 (ENSOANG00000048500) #23	PGF (ENSOANG00000047675) #24	EIF2B2 (ENSOANG00000043193) #25	ENSOANG00000043220 #26	ENSOANG00000039964	NEK9 (ENSOANG00000007750) #29	TMED10 (ENSOANG00000045312) #30	FOS (ENSOANG00000005064) #31	ENSOANG00000046733 #34	FLVCR2 (ENSOANG00000005066) #35	ERG28 (ENSOANG00000005067) #36	ENSOANG00000005068	TGFB3 (ENSOANG00000046243)	IFT43 (ENSOANG00000038679)	GPATCH2L (ENSOANG00000044936)
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Aves	ANCESTRAL SPECIES	2	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.i #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.i #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Golden eagle	MODERN SPECIES	11	BBOF1 (ENSACCG00020002890)	ALDH6A1 (ENSACCG00020002831) #7	LIN52 (ENSACCG00020002790) #9	VSX2 (ENSACCG00020002778) #11	ENSACCG00020002758	ABCD4 (ENSACCG00020002740) #12	VRTN (ENSACCG00020002717) #13	SYNDIG1L (ENSACCG00020002699) #14	ISCA2 (ENSACCG00020002695) #16	NPC2 (ENSACCG00020002688) #15	LTBP2 (ENSACCG00020002582) #17	AREL1 (ENSACCG00020002407) #18	FCF1 (ENSACCG00020002385) #19	YLPM1 (ENSACCG00020002356) #20	PROX2 (ENSACCG00020002325) #21	DLST (ENSACCG00020002299) #22	RPS6KL1 (ENSACCG00020002260) #23	PGF (ENSACCG00020002218) #24	EIF2B2 (ENSACCG00020002164) #25	MLH3 (ENSACCG00020002145) #26	ENSACCG00020002134 #27	ZC2HC1C (ENSACCG00020002116) #28	NEK9 (ENSACCG00020002085) #29	TMED10 (ENSACCG00020002055) #30	FOS (ENSACCG00020002039) #31	JDP2 (ENSACCG00020002026) #32	BATF (ENSACCG00020002009) #34	FLVCR2 (ENSACCG00020001984) #35	ERG28 (ENSACCG00020001961) #36	ENSACCG00020001819	TGFB3 (ENSACCG00020001694)
Kakapo	MODERN SPECIES	21	ENTPD5 (ENSSHBG00005002275)	ALDH6A1 (ENSSHBG00005002249) #7	LIN52 (ENSSHBG00005002241) #9	VSX2 (ENSSHBG00005002229) #11	ABCD4 (ENSSHBG00005002203) #12	VRTN (ENSSHBG00005002185) #13	SYNDIG1L (ENSSHBG00005002175) #14	ISCA2 (ENSSHBG00005002165) #16	NPC2 (ENSSHBG00005002154) #15	ENSSHBG00005002127 #17	AREL1 (ENSSHBG00005002081) #18	FCF1 (ENSSHBG00005002041) #19	ENSSHBG00005002015 #20	ENSSHBG00005001994 #20	PROX2 (ENSSHBG00005001976) #21	DLST (ENSSHBG00005001954) #22	RPS6KL1 (ENSSHBG00005001934) #23	PGF (ENSSHBG00005001915) #24	EIF2B2 (ENSSHBG00005001888) #25	ENSSHBG00005001871 #27	MLH3 (ENSSHBG00005001837) #26	ZC2HC1C (ENSSHBG00005001804) #28	NEK9 (ENSSHBG00005001722) #29	TMED10 (ENSSHBG00005001619) #30	FOS (ENSSHBG00005001582) #31	JDP2 (ENSSHBG00005001554) #32	BATF (ENSSHBG00005001532) #34	FLVCR2 (ENSSHBG00005001491) #35	ERG28 (ENSSHBG00005001459) #36	ENSSHBG00005001427	TGFB3 (ENSSHBG00005000556)
Passeriformes	ANCESTRAL SPECIES	5	ENSGT01100000263540.A.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.j #35	ENSGT01030000234625.B.d.i #35	ENSGT00390000010925 #36	ENSGT00940000162910
Great tit	MODERN SPECIES	25	ALDH6A1 (ENSPMJG00000016693) #7	LIN52 (ENSPMJG00000016694) #9	VSX2 (ENSPMJG00000016695) #11	ENSPMJG00000016696	ABCD4 (ENSPMJG00000016697) #12	VRTN (ENSPMJG00000016698) #13	SYNDIG1L (ENSPMJG00000016699) #14	ISCA2 (ENSPMJG00000016700) #16	NPC2 (ENSPMJG00000016701) #15	LTBP2 (ENSPMJG00000016702) #17	AREL1 (ENSPMJG00000016703) #18	FCF1 (ENSPMJG00000016704) #19	YLPM1 (ENSPMJG00000016705) #20	ENSPMJG00000016727	PROX2 (ENSPMJG00000016728) #21	DLST (ENSPMJG00000016729) #22	RPS6KL1 (ENSPMJG00000016730) #23	PGF (ENSPMJG00000016731) #24	EIF2B2 (ENSPMJG00000016732) #25	MLH3 (ENSPMJG00000016733) #26	ENSPMJG00000016734 #27	ENSPMJG00000016735 #28	NEK9 (ENSPMJG00000016739) #29	TMED10 (ENSPMJG00000016820) #30	FOS (ENSPMJG00000016821) #31	JDP2 (ENSPMJG00000016823) #32	BATF (ENSPMJG00000016824) #34	ENSPMJG00000016825 #35	ENSPMJG00000016826 #35	ERG28 (ENSPMJG00000016827) #36	ENSPMJG00000016828
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT01100000263540.A.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.j #35	ENSGT01030000234625.B.d.i #35	ENSGT00390000010925 #36	ENSGT00940000162910
Flycatcher	MODERN SPECIES	24	ALDH6A1 (ENSFALG00000024159) #7	LIN52 (ENSFALG00000028779) #9	VSX2 (ENSFALG00000006274) #11	ENSFALG00000006277	ABCD4 (ENSFALG00000006280) #12	VRTN (ENSFALG00000015230) #13	SYNDIG1L (ENSFALG00000006284) #14	ENSFALG00000028034 #16	ENSFALG00000006290 #15	LTBP2 (ENSFALG00000006295) #17	ENSFALG00000026806	AREL1 (ENSFALG00000006298) #18	FCF1 (ENSFALG00000006301) #19	YLPM1 (ENSFALG00000006304) #20	PROX2 (ENSFALG00000006312) #21	DLST (ENSFALG00000006316) #22	RPS6KL1 (ENSFALG00000006331) #23	PGF (ENSFALG00000028486) #24	EIF2B2 (ENSFALG00000006338) #25	MLH3 (ENSFALG00000006344) #26	ENSFALG00000006347 #27	ENSFALG00000006348 #28	NEK9 (ENSFALG00000006350) #29	TMED10 (ENSFALG00000025099) #30	FOS (ENSFALG00000024693) #31	JDP2 (ENSFALG00000006358) #32	BATF (ENSFALG00000025671) #34	FLVCR2 (ENSFALG00000023021) #35	ERG28 (ENSFALG00000006377) #36	ENSFALG00000006387	TGFB3 (ENSFALG00000006413)
Passeriformes_g	ANCESTRAL SPECIES		ENSGT01100000263540.A.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.j #35	ENSGT01030000234625.B.d.i #35	ENSGT00390000010925 #36	ENSGT00940000162910
Passeroidea	ANCESTRAL SPECIES	1	ENSGT01100000263540.A.b	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.j #35	ENSGT01030000234625.B.d.i #35	ENSGT00390000010925 #36	ENSGT00940000162910
Zebra finch	MODERN SPECIES	27	COQ6 (ENSTGUG00000012085)	ENTPD5 (ENSTGUG00000023657)	ALDH6A1 (ENSTGUG00000014114) #7	LIN52 (ENSTGUG00000023527) #9	VSX2 (ENSTGUG00000012109) #11	ABCD4 (ENSTGUG00000012116) #12	VRTN (ENSTGUG00000012125) #13	SYNDIG1L (ENSTGUG00000022036) #14	ISCA2 (ENSTGUG00000016281) #16	NPC2 (ENSTGUG00000016271) #15	LTBP2 (ENSTGUG00000012131) #17	AREL1 (ENSTGUG00000012150) #18	FCF1 (ENSTGUG00000020479) #19	YLPM1 (ENSTGUG00000012165) #20	PROX2 (ENSTGUG00000012170) #21	DLST (ENSTGUG00000012171) #22	RPS6KL1 (ENSTGUG00000012186) #23	PGF (ENSTGUG00000019217) #24	EIF2B2 (ENSTGUG00000012191) #25	MLH3 (ENSTGUG00000012203) #26	ACYP1 (ENSTGUG00000012209) #27	ENSTGUG00000020837 #28	NEK9 (ENSTGUG00000012213) #29	TMED10 (ENSTGUG00000028035) #30	FOS (ENSTGUG00000012217) #31	BATF (ENSTGUG00000028382) #34	ENSTGUG00000012221 #35	ENSTGUG00000024811 #35	ERG28 (ENSTGUG00000020427) #36	ENSTGUG00000012226	TGFB3 (ENSTGUG00000019296)
Common canary	MODERN SPECIES	3	ENTPD5 (ENSSCAG00000010262)	ALDH6A1 (ENSSCAG00000010194) #7	LIN52 (ENSSCAG00000010182) #9	VSX2 (ENSSCAG00000010180) #11	ENSSCAG00000010166	ABCD4 (ENSSCAG00000010160) #12	VRTN (ENSSCAG00000010157) #13	SYNDIG1L (ENSSCAG00000010118) #14	ISCA2 (ENSSCAG00000010111) #16	NPC2 (ENSSCAG00000010103) #15	LTBP2 (ENSSCAG00000010015) #17	AREL1 (ENSSCAG00000009993) #18	FCF1 (ENSSCAG00000009987) #19	YLPM1 (ENSSCAG00000009864) #20	PROX2 (ENSSCAG00000009845) #21	DLST (ENSSCAG00000009837) #22	RPS6KL1 (ENSSCAG00000009834) #23	PGF (ENSSCAG00000009832) #24	EIF2B2 (ENSSCAG00000009821) #25	MLH3 (ENSSCAG00000009812) #26	ENSSCAG00000009801 #27	ENSSCAG00000009797 #28	NEK9 (ENSSCAG00000009723) #29	TMED10 (ENSSCAG00000009702) #30	FOS (ENSSCAG00000009700) #31	JDP2 (ENSSCAG00000009696) #32	BATF (ENSSCAG00000009693) #34	FLVCR2 (ENSSCAG00000009666) #35	ERG28 (ENSSCAG00000009658) #36	ENSSCAG00000009627	TGFB3 (ENSSCAG00000009618)
Medium ground finch	MODERN SPECIES	4	FAM161B (ENSGFOG00000003198)	COQ6 (ENSGFOG00000002978)	ENTPD5 (ENSGFOG00000002920)	ALDH6A1 (ENSGFOG00000002901) #7	VSX2 (ENSGFOG00000002875) #11	ENSGFOG00000002748	ABCD4 (ENSGFOG00000002710) #12	VRTN (ENSGFOG00000002699) #13	SYNDIG1L (ENSGFOG00000002688) #14	ISCA2 (ENSGFOG00000002678) #16	NPC2 (ENSGFOG00000002662) #15	AREL1 (ENSGFOG00000002509) #18	FCF1 (ENSGFOG00000002486) #19	YLPM1 (ENSGFOG00000002443) #20	PROX2 (ENSGFOG00000002426) #21	DLST (ENSGFOG00000002394) #22	RPS6KL1 (ENSGFOG00000002379) #23	PGF (ENSGFOG00000002365) #24	EIF2B2 (ENSGFOG00000002313) #25	MLH3 (ENSGFOG00000002274) #26	ENSGFOG00000002259 #27	ZC2HC1C (ENSGFOG00000002249) #28	NEK9 (ENSGFOG00000002105) #29	TMED10 (ENSGFOG00000002078) #30	JDP2 (ENSGFOG00000002072) #32	BATF (ENSGFOG00000002062) #34	FLVCR2 (ENSGFOG00000001853) #35	ERG28 (ENSGFOG00000001835) #36	ENSGFOG00000001672	TGFB3 (ENSGFOG00000001638)	IFT43 (ENSGFOG00000001630)
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Japanese quail	MODERN SPECIES	23	ENSCJPG00005019186	ALDH6A1 (ENSCJPG00005019187) #7	LIN52 (ENSCJPG00005019214) #9	VSX2 (ENSCJPG00005019215) #11	ENSCJPG00005019216	ABCD4 (ENSCJPG00005019217) #12	VRTN (ENSCJPG00005019218) #13	SYNDIG1L (ENSCJPG00005019220) #14	ISCA2 (ENSCJPG00005019221) #16	NPC2 (ENSCJPG00005019222) #15	LTBP2 (ENSCJPG00005019223) #17	AREL1 (ENSCJPG00005019225) #18	FCF1 (ENSCJPG00005019226) #19	YLPM1 (ENSCJPG00005019228) #20	PROX2 (ENSCJPG00005019240) #21	DLST (ENSCJPG00005019241) #22	RPS6KL1 (ENSCJPG00005019242) #23	PGF (ENSCJPG00005019243) #24	EIF2B2 (ENSCJPG00005019244) #25	MLH3 (ENSCJPG00005019245) #26	ENSCJPG00005019246 #27	ZC2HC1C (ENSCJPG00005019247) #28	NEK9 (ENSCJPG00005019248) #29	TMED10 (ENSCJPG00005019249) #30	FOS (ENSCJPG00005019250) #31	JDP2 (ENSCJPG00005019251) #32	BATF (ENSCJPG00005019252) #34	FLVCR2 (ENSCJPG00005019253) #35	ERG28 (ENSCJPG00005019254) #36	ENSCJPG00005019256	TGFB3 (ENSCJPG00005019265)
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Chicken	MODERN SPECIES	34	ENTPD5 (ENSGALG00010006568)	ALDH6A1 (ENSGALG00010006580) #7	LIN52 (ENSGALG00010006619) #9	VSX2 (ENSGALG00010006231) #11	ENSGALG00010006291	ABCD4 (ENSGALG00010006311) #12	VRTN (ENSGALG00010006280) #13	SYNDIG1L (ENSGALG00010006328) #14	ISCA2 (ENSGALG00010004380) #16	NPC2 (ENSGALG00010004307) #15	LTBP2 (ENSGALG00010004325) #17	AREL1 (ENSGALG00010005981) #18	FCF1 (ENSGALG00010005989) #19	YLPM1 (ENSGALG00010005998) #20	PROX2 (ENSGALG00010005943) #21	DLST (ENSGALG00010006085) #22	RPS6KL1 (ENSGALG00010006100) #23	PGF (ENSGALG00010006107) #24	EIF2B2 (ENSGALG00010006113) #25	MLH3 (ENSGALG00010006123) #26	ACYP1 (ENSGALG00010006128) #27	ZC2HC1C (ENSGALG00010006135) #28	NEK9 (ENSGALG00010006177) #29	TMED10 (ENSGALG00010006188) #30	FOS (ENSGALG00010006212) #31	JDP2 (ENSGALG00010004473) #32	BATF (ENSGALG00010004553) #34	FLVCR2 (ENSGALG00010005057) #35	C5H14orf1 (ENSGALG00010005077) #36	TTLL5 (ENSGALG00010005107)	TGFB3 (ENSGALG00010005146)
Turkey	MODERN SPECIES	25	BBOF1 (ENSMGAG00000012627)	ALDH6A1 (ENSMGAG00000012632) #7	LIN52 (ENSMGAG00000012638) #9	VSX2 (ENSMGAG00000012646) #11	ENSMGAG00000012650	ABCD4 (ENSMGAG00000012657) #12	VRTN (ENSMGAG00000012667) #13	SYNDIG1L (ENSMGAG00000012668) #14	ENSMGAG00000012674 #16	ENSMGAG00000012679 #15	LTBP2 (ENSMGAG00000012684) #17	AREL1 (ENSMGAG00000012699) #18	FCF1 (ENSMGAG00000012704) #19	YLPM1 (ENSMGAG00000012707) #20	PROX2 (ENSMGAG00000012715) #21	DLST (ENSMGAG00000012717) #22	RPS6KL1 (ENSMGAG00000012729) #23	ENSMGAG00000021471 #24	EIF2B2 (ENSMGAG00000012733) #25	MLH3 (ENSMGAG00000012735) #26	ENSMGAG00000012741 #27	ZC2HC1C (ENSMGAG00000012742) #28	NEK9 (ENSMGAG00000012746) #29	TMED10 (ENSMGAG00000012754) #30	JDP2 (ENSMGAG00000012755) #32	BATF (ENSMGAG00000012758) #34	FLVCR2 (ENSMGAG00000012760) #35	ERG28 (ENSMGAG00000012763) #36	ENSMGAG00000012764	ENSMGAG00000012783	IFT43 (ENSMGAG00000012792)
Anatidae	ANCESTRAL SPECIES	9	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747
Pink-footed goose	MODERN SPECIES	23	ENTPD5 (ENSABRG00000008136)	BBOF1 (ENSABRG00000008070)	ALDH6A1 (ENSABRG00000007631) #7	LIN52 (ENSABRG00000007580) #9	VSX2 (ENSABRG00000007568) #11	ABCD4 (ENSABRG00000007564) #12	VRTN (ENSABRG00000007556) #13	SYNDIG1L (ENSABRG00000007553) #14	ISCA2 (ENSABRG00000007546) #16	NPC2 (ENSABRG00000007540) #15	LTBP2 (ENSABRG00000006674) #17	AREL1 (ENSABRG00000006312) #18	FCF1 (ENSABRG00000006245) #19	YLPM1 (ENSABRG00000006121) #20	PROX2 (ENSABRG00000006090) #21	DLST (ENSABRG00000006045) #22	RPS6KL1 (ENSABRG00000006027) #23	PGF (ENSABRG00000006020) #24	EIF2B2 (ENSABRG00000005958) #25	MLH3 (ENSABRG00000005858) #26	ENSABRG00000005837 #27	ZC2HC1C (ENSABRG00000005789) #28	NEK9 (ENSABRG00000005273) #29	TMED10 (ENSABRG00000005211) #30	FOS (ENSABRG00000005204) #31	JDP2 (ENSABRG00000005200) #32	BATF (ENSABRG00000005195) #34	FLVCR2 (ENSABRG00000004069) #35	ERG28 (ENSABRG00000003925) #36	ENSABRG00000002595	TGFB3 (ENSABRG00000002408)
Duck	MODERN SPECIES	23	COQ6 (ENSAPLG00000013830)	ENTPD5 (ENSAPLG00000014079)	BBOF1 (ENSAPLG00000014370)	ALDH6A1 (ENSAPLG00000019703) #7	LIN52 (ENSAPLG00000014829) #9	ABCD4 (ENSAPLG00000014842) #12	VRTN (ENSAPLG00000015007) #13	SYNDIG1L (ENSAPLG00000015081) #14	ISCA2 (ENSAPLG00000022258) #16	NPC2 (ENSAPLG00000017454) #15	LTBP2 (ENSAPLG00000015140) #17	AREL1 (ENSAPLG00000001964) #18	FCF1 (ENSAPLG00000002613) #19	YLPM1 (ENSAPLG00000002844) #20	PROX2 (ENSAPLG00000024082) #21	DLST (ENSAPLG00000009194) #22	EIF2B2 (ENSAPLG00000010140) #25	ENSAPLG00000010239 #26	NEK9 (ENSAPLG00000010802) #29	TMED10 (ENSAPLG00000020865) #30	FOS (ENSAPLG00000020281) #31	JDP2 (ENSAPLG00000011380) #32	BATF (ENSAPLG00000024395) #34	FLVCR2 (ENSAPLG00000011656) #35	ERG28 (ENSAPLG00000011876) #36	ENSAPLG00000011877	TGFB3 (ENSAPLG00000012199)	ENSAPLG00000012286	GPATCH2L (ENSAPLG00000012320)	ESRRB (ENSAPLG00000012470)	ANGEL1 (ENSAPLG00000012908)
African ostrich	MODERN SPECIES	477	ENTPD5 (ENSSCUG00000005345)	BBOF1 (ENSSCUG00000005343)	ALDH6A1 (ENSSCUG00000005337) #7	LIN52 (ENSSCUG00000005334) #9	ENSSCUG00000005330	ABCD4 (ENSSCUG00000005327) #12	VRTN (ENSSCUG00000005326) #13	SYNDIG1L (ENSSCUG00000005325) #14	ENSSCUG00000005324	NPC2 (ENSSCUG00000005322) #15	LTBP2 (ENSSCUG00000005321) #17	AREL1 (ENSSCUG00000005320) #18	FCF1 (ENSSCUG00000005319) #19	YLPM1 (ENSSCUG00000005318) #20	PROX2 (ENSSCUG00000005317) #21	DLST (ENSSCUG00000005316) #22	RPS6KL1 (ENSSCUG00000005315) #23	PGF (ENSSCUG00000005314) #24	EIF2B2 (ENSSCUG00000005313) #25	MLH3 (ENSSCUG00000005309) #26	ENSSCUG00000005308 #27	ZC2HC1C (ENSSCUG00000005307) #28	NEK9 (ENSSCUG00000005285) #29	TMED10 (ENSSCUG00000005272) #30	JDP2 (ENSSCUG00000005270) #32
Australian saltwater crocodile	MODERN SPECIES	64	BBOF1 (ENSCPRG00005004060)	ALDH6A1 (ENSCPRG00005004064) #7	LIN52 (ENSCPRG00005004069) #9	VSX2 (ENSCPRG00005004087) #11	ENSCPRG00005004091	ABCD4 (ENSCPRG00005004118) #12	VRTN (ENSCPRG00005004144) #13	SYNDIG1L (ENSCPRG00005004169) #14	ENSCPRG00005004172	NPC2 (ENSCPRG00005004174) #15	LTBP2 (ENSCPRG00005004192) #17	AREL1 (ENSCPRG00005004372) #18	FCF1 (ENSCPRG00005004669) #19	ENSCPRG00005004699 #20	PROX2 (ENSCPRG00005004701) #21	DLST (ENSCPRG00005004713) #22	RPS6KL1 (ENSCPRG00005004756) #23	PGF (ENSCPRG00005004776) #24	EIF2B2 (ENSCPRG00005004792) #25	MLH3 (ENSCPRG00005004921) #26	ENSCPRG00005004949 #27	ZC2HC1C (ENSCPRG00005004999) #28	NEK9 (ENSCPRG00005005015) #29	TMED10 (ENSCPRG00005005026) #30	FOS (ENSCPRG00005005033) #31	JDP2 (ENSCPRG00005005039) #32	BATF (ENSCPRG00005005043) #34	FLVCR2 (ENSCPRG00005005058) #35	ERG28 (ENSCPRG00005005083) #36	ENSCPRG00005005097	TGFB3 (ENSCPRG00005005133)
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Emydidae	ANCESTRAL SPECIES	2	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00900000143573
Three-toed box turtle	MODERN SPECIES	40	LIN52 (ENSTMTG00000011525) #9	VSX2 (ENSTMTG00000011538) #11	ENSTMTG00000011595	ABCD4 (ENSTMTG00000011713) #12	VRTN (ENSTMTG00000011752) #13	SYNDIG1L (ENSTMTG00000011761) #14	ENSTMTG00000011800	ENSTMTG00000011818	ISCA2 (ENSTMTG00000011837) #16	NPC2 (ENSTMTG00000011846) #15	LTBP2 (ENSTMTG00000011882) #17	AREL1 (ENSTMTG00000012332) #18	FCF1 (ENSTMTG00000014262) #19	YLPM1 (ENSTMTG00000014275) #20	PROX2 (ENSTMTG00000014292) #21	DLST (ENSTMTG00000014310) #22	RPS6KL1 (ENSTMTG00000014348) #23	PGF (ENSTMTG00000014442) #24	EIF2B2 (ENSTMTG00000014462) #25	MLH3 (ENSTMTG00000014498) #26	ENSTMTG00000014544 #27	ZC2HC1C (ENSTMTG00000014553) #28	NEK9 (ENSTMTG00000014568) #29	TMED10 (ENSTMTG00000014603) #30	FOS (ENSTMTG00000014616) #31	JDP2 (ENSTMTG00000014629) #32	BATF (ENSTMTG00000014636) #34	FLVCR2 (ENSTMTG00000014652) #35	ERG28 (ENSTMTG00000014676) #36	ENSTMTG00000014814	TGFB3 (ENSTMTG00000016700)
painted turtle	MODERN SPECIES	13	BBOF1 (ENSCPBG00000026217)	ALDH6A1 (ENSCPBG00000026218) #7	LIN52 (ENSCPBG00000026219) #9	VSX2 (ENSCPBG00000026221) #11	ENSCPBG00000026223	ABCD4 (ENSCPBG00000026224) #12	VRTN (ENSCPBG00000026225) #13	SYNDIG1L (ENSCPBG00000026226) #14	ISCA2 (ENSCPBG00000026227) #16	NPC2 (ENSCPBG00000026228) #15	LTBP2 (ENSCPBG00000026229) #17	AREL1 (ENSCPBG00000026230) #18	FCF1 (ENSCPBG00000026231) #19	YLPM1 (ENSCPBG00000026232) #20	PROX2 (ENSCPBG00000026233) #21	DLST (ENSCPBG00000026234) #22	RPS6KL1 (ENSCPBG00000026235) #23	PGF (ENSCPBG00000026236) #24	EIF2B2 (ENSCPBG00000026237) #25	MLH3 (ENSCPBG00000026238) #26	ENSCPBG00000026240 #27	ZC2HC1C (ENSCPBG00000026241) #28	NEK9 (ENSCPBG00000026242) #29	TMED10 (ENSCPBG00000026244) #30	FOS (ENSCPBG00000026248) #31	JDP2 (ENSCPBG00000026250) #32	BATF (ENSCPBG00000026252) #34	FLVCR2 (ENSCPBG00000026254) #35	ERG28 (ENSCPBG00000026257) #36	ENSCPBG00000026263	ENSCPBG00000026268
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Goode s thornscrub tortoise	MODERN SPECIES	18	ALDH6A1 (ENSGEVG00005002696) #7	LIN52 (ENSGEVG00005002674) #9	VSX2 (ENSGEVG00005002657) #11	ENSGEVG00005002626	ABCD4 (ENSGEVG00005002587) #12	VRTN (ENSGEVG00005002571) #13	SYNDIG1L (ENSGEVG00005002558) #14	ISCA2 (ENSGEVG00005002545) #16	NPC2 (ENSGEVG00005002529) #15	LTBP2 (ENSGEVG00005002485) #17	AREL1 (ENSGEVG00005002458) #18	FCF1 (ENSGEVG00005002437) #19	YLPM1 (ENSGEVG00005002397) #20	ENSGEVG00005002378	PROX2 (ENSGEVG00005002365) #21	DLST (ENSGEVG00005002330) #22	RPS6KL1 (ENSGEVG00005002304) #23	PGF (ENSGEVG00005002282) #24	EIF2B2 (ENSGEVG00005002271) #25	MLH3 (ENSGEVG00005002234) #26	ENSGEVG00005002208 #27	ZC2HC1C (ENSGEVG00005002199) #28	NEK9 (ENSGEVG00005002164) #29	TMED10 (ENSGEVG00005002145) #30	FOS (ENSGEVG00005002133) #31	JDP2 (ENSGEVG00005002120) #32	BATF (ENSGEVG00005002108) #34	FLVCR2 (ENSGEVG00005002085) #35	ERG28 (ENSGEVG00005002067) #36	ENSGEVG00005001531	TGFB3 (ENSGEVG00005001201)
Abingdon island giant tortoise	MODERN SPECIES	2201	VSX2 (ENSCABG00000022693) #11	ENSCABG00000022694	ENSCABG00000022695 #12	ENSCABG00000022697 #12	ENSCABG00000022698 #12	VRTN (ENSCABG00000022701) #13	SYNDIG1L (ENSCABG00000022702) #14	ENSCABG00000022705	ISCA2 (ENSCABG00000022706) #16	NPC2 (ENSCABG00000022707) #15	LTBP2 (ENSCABG00000022709) #17	AREL1 (ENSCABG00000022711) #18	FCF1 (ENSCABG00000022715) #19	YLPM1 (ENSCABG00000022719) #20	PROX2 (ENSCABG00000022729) #21	DLST (ENSCABG00000022730) #22	RPS6KL1 (ENSCABG00000022731) #23	PGF (ENSCABG00000022732) #24	EIF2B2 (ENSCABG00000022733) #25	MLH3 (ENSCABG00000022738) #26	ENSCABG00000022746 #27	ENSCABG00000022749 #28	NEK9 (ENSCABG00000022754) #29	TMED10 (ENSCABG00000022757) #30	FOS (ENSCABG00000022762) #31	JDP2 (ENSCABG00000022764) #32	BATF (ENSCABG00000022766) #34	ENSCABG00000022767 #35	ENSCABG00000022769 #35	ERG28 (ENSCABG00000022770) #36	ENSCABG00000022772
Chinese turtle	MODERN SPECIES	666	BBOF1 (ENSPSIG00000015556)	ALDH6A1 (ENSPSIG00000015581) #7	LIN52 (ENSPSIG00000015591) #9	VSX2 (ENSPSIG00000015600) #11	ENSPSIG00000015706	ABCD4 (ENSPSIG00000016190) #12	VRTN (ENSPSIG00000000381) #13	SYNDIG1L (ENSPSIG00000016403) #14	ISCA2 (ENSPSIG00000016409) #16	NPC2 (ENSPSIG00000016428) #15	LTBP2 (ENSPSIG00000016524) #17	AREL1 (ENSPSIG00000016885) #18	FCF1 (ENSPSIG00000016906) #19	YLPM1 (ENSPSIG00000016931) #20	PROX2 (ENSPSIG00000017015) #21	DLST (ENSPSIG00000017022) #22	RPS6KL1 (ENSPSIG00000017157) #23	PGF (ENSPSIG00000017412) #24	EIF2B2 (ENSPSIG00000017425) #25	MLH3 (ENSPSIG00000017451) #26	ENSPSIG00000017500 #27	ZC2HC1C (ENSPSIG00000017503) #28	NEK9 (ENSPSIG00000017508) #29	TMED10 (ENSPSIG00000017584) #30	FOS (ENSPSIG00000017598) #31	JDP2 (ENSPSIG00000017647) #32	BATF (ENSPSIG00000017659) #34	FLVCR2 (ENSPSIG00000017663) #35	ERG28 (ENSPSIG00000017766) #36	ENSPSIG00000017794	TGFB3 (ENSPSIG00000017861)
Lepidosauria	ANCESTRAL SPECIES	24	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Episquamata	ANCESTRAL SPECIES		ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a.f #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000155747	ENSGT00390000012060
Common wall lizard	MODERN SPECIES		LIN52 (ENSPMRG00000008577) #9	VSX2 (ENSPMRG00000008567) #11	ENSPMRG00000008552	ABCD4 (ENSPMRG00000008533) #12	ENSPMRG00000008526 #13	ENSPMRG00000008522 #13	SYNDIG1L (ENSPMRG00000008514) #14	ENSPMRG00000008501 #14	ISCA2 (ENSPMRG00000008488) #16	NPC2 (ENSPMRG00000008478) #15	LTBP2 (ENSPMRG00000007807) #17	AREL1 (ENSPMRG00000007679) #18	FCF1 (ENSPMRG00000007667) #19	YLPM1 (ENSPMRG00000007645) #20	PROX2 (ENSPMRG00000007626) #21	DLST (ENSPMRG00000007614) #22	RPS6KL1 (ENSPMRG00000007595) #23	PGF (ENSPMRG00000007576) #24	EIF2B2 (ENSPMRG00000007566) #25	MLH3 (ENSPMRG00000007542) #26	ENSPMRG00000007523 #27	ZC2HC1C (ENSPMRG00000007516) #28	ENSPMRG00000007335 #29	TMED10 (ENSPMRG00000007264) #30	ENSPMRG00000007248 #29	ENSPMRG00000007221	FOS (ENSPMRG00000007201) #31	JDP2 (ENSPMRG00000007196) #32	BATF (ENSPMRG00000007182) #34	FLVCR2 (ENSPMRG00000007159) #35	ERG28 (ENSPMRG00000007143) #36
Argentine black and white tegu	MODERN SPECIES	14	BBOF1 (ENSSMRG00000012650)	ALDH6A1 (ENSSMRG00000012649) #7	LIN52 (ENSSMRG00000012646) #9	VSX2 (ENSSMRG00000012645) #11	ENSSMRG00000012641	ABCD4 (ENSSMRG00000012634) #12	VRTN (ENSSMRG00000012633) #13	SYNDIG1L (ENSSMRG00000012632) #14	ISCA2 (ENSSMRG00000012627) #16	NPC2 (ENSSMRG00000012626) #15	LTBP2 (ENSSMRG00000012625) #17	AREL1 (ENSSMRG00000012614) #18	FCF1 (ENSSMRG00000012613) #19	YLPM1 (ENSSMRG00000012612) #20	PROX2 (ENSSMRG00000012610) #21	DLST (ENSSMRG00000012609) #22	RPS6KL1 (ENSSMRG00000012608) #23	PGF (ENSSMRG00000012606) #24	EIF2B2 (ENSSMRG00000012590) #25	ENSSMRG00000012587 #26	ENSSMRG00000012585 #26	ENSSMRG00000012584 #27	ZC2HC1C (ENSSMRG00000012583) #28	NEK9 (ENSSMRG00000012582) #29	TMED10 (ENSSMRG00000012581) #30	ENSSMRG00000012579	FOS (ENSSMRG00000012578) #31	JDP2 (ENSSMRG00000012575) #32	BATF (ENSSMRG00000012569) #34	FLVCR2 (ENSSMRG00000012568) #35	ERG28 (ENSSMRG00000012567) #36
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837.e #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837.e #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176.x #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837.e #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176.x #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00940000165253	ENSGT00950000182955.a.a.b #12	ENSGT00390000007874 #13	ENSGT00950000183147.A.a #14	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000160884 #17	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837.e #20	ENSGT00940000154790.b #21	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00940000160164 #24	ENSGT00550000074908 #25	ENSGT00800000124176.x #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00550000074954 #30	ENSGT00940000159276 #31	ENSGT00940000155693 #32	ENSGT00940000159745 #34	ENSGT01030000234625.B.d.m #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000162939 #37
Mainland tiger snake	MODERN SPECIES	8	BBOF1 (ENSNSUG00000003051)	ALDH6A1 (ENSNSUG00000003043) #7	LIN52 (ENSNSUG00000003041) #9	VSX2 (ENSNSUG00000003040) #11	ENSNSUG00000003039	ABCD4 (ENSNSUG00000003033) #12	VRTN (ENSNSUG00000003032) #13	SYNDIG1L (ENSNSUG00000003021) #14	ISCA2 (ENSNSUG00000003017) #16	NPC2 (ENSNSUG00000003016) #15	LTBP2 (ENSNSUG00000002986) #17	AREL1 (ENSNSUG00000002884) #18	FCF1 (ENSNSUG00000002881) #19	YLPM1 (ENSNSUG00000002397) #20	PROX2 (ENSNSUG00000002395) #21	DLST (ENSNSUG00000002388) #22	RPS6KL1 (ENSNSUG00000002351) #23	EIF2B2 (ENSNSUG00000002350) #25	MLH3 (ENSNSUG00000002069) #26	ENSNSUG00000002067 #27	ZC2HC1C (ENSNSUG00000002058) #28	NEK9 (ENSNSUG00000002051) #29	TMED10 (ENSNSUG00000002049) #30	FOS (ENSNSUG00000002048) #31	JDP2 (ENSNSUG00000002045) #32	BATF (ENSNSUG00000002044) #34	ENSNSUG00000002043 #35	ENSNSUG00000002042	ENSNSUG00000002040 #35	ERG28 (ENSNSUG00000002030) #36	ENSNSUG00000002024
Eastern brown snake	MODERN SPECIES	1	BBOF1 (ENSPTXG00000004390)	ALDH6A1 (ENSPTXG00000004391) #7	LIN52 (ENSPTXG00000004392) #9	VSX2 (ENSPTXG00000004393) #11	ENSPTXG00000004394	ABCD4 (ENSPTXG00000004395) #12	VRTN (ENSPTXG00000004398) #13	SYNDIG1L (ENSPTXG00000004399) #14	ISCA2 (ENSPTXG00000004401) #16	NPC2 (ENSPTXG00000004402) #15	LTBP2 (ENSPTXG00000004404) #17	AREL1 (ENSPTXG00000004408) #18	FCF1 (ENSPTXG00000004410) #19	YLPM1 (ENSPTXG00000004411) #20	PROX2 (ENSPTXG00000004414) #21	DLST (ENSPTXG00000004417) #22	RPS6KL1 (ENSPTXG00000004436) #23	ENSPTXG00000004462	PGF (ENSPTXG00000004465) #24	EIF2B2 (ENSPTXG00000004467) #25	ENSPTXG00000004470 #26	ENSPTXG00000004472 #26	ENSPTXG00000004474 #27	ZC2HC1C (ENSPTXG00000004475) #28	NEK9 (ENSPTXG00000004480) #29	TMED10 (ENSPTXG00000004528) #30	FOS (ENSPTXG00000004529) #31	JDP2 (ENSPTXG00000004530) #32	BATF (ENSPTXG00000004531) #34	FLVCR2 (ENSPTXG00000004532) #35	ERG28 (ENSPTXG00000004533) #36
Blue-lipped sea krait	MODERN SPECIES	7144															PROX2 (ENSLLTG00000005602) #21	DLST (ENSLLTG00000005584) #22
Indian cobra	MODERN SPECIES		VSX2 (ENSNNAG00000010585) #11	ENSNNAG00000010718	ABCD4 (ENSNNAG00000011119) #12	VRTN (ENSNNAG00000011891) #13	ENSNNAG00000011902 #14	ENSNNAG00000011932 #14	ENSNNAG00000011959 #14	ISCA2 (ENSNNAG00000011983) #16	NPC2 (ENSNNAG00000012028) #15	LTBP2 (ENSNNAG00000012406) #17	AREL1 (ENSNNAG00000016798) #18	FCF1 (ENSNNAG00000016842) #19	ENSNNAG00000016859 #20	ENSNNAG00000016875 #20	PROX2 (ENSNNAG00000016891) #21	DLST (ENSNNAG00000016902) #22	RPS6KL1 (ENSNNAG00000016916) #23	PGF (ENSNNAG00000016923) #24	EIF2B2 (ENSNNAG00000016926) #25	MLH3 (ENSNNAG00000016933) #26	ENSNNAG00000016948 #27	ZC2HC1C (ENSNNAG00000016951) #28	NEK9 (ENSNNAG00000016962) #29	TMED10 (ENSNNAG00000016991) #30	FOS (ENSNNAG00000016993) #31	JDP2 (ENSNNAG00000016998) #32	BATF (ENSNNAG00000017004) #34	FLVCR2 (ENSNNAG00000017019) #35	ERG28 (ENSNNAG00000017050) #36	ENSNNAG00000017067	TGFB3 (ENSNNAG00000017102)
Lizard	MODERN SPECIES		BBOF1 (ENSACAG00000016293)	ALDH6A1 (ENSACAG00000016307) #7	LIN52 (ENSACAG00000016339) #9	VSX2 (ENSACAG00000016343) #11	ENSACAG00000016356	ABCD4 (ENSACAG00000016423) #12	VRTN (ENSACAG00000016464) #13	SYNDIG1L (ENSACAG00000016466) #14	ENSACAG00000016482 #16	NPC2 (ENSACAG00000040505) #15	LTBP2 (ENSACAG00000016494) #17	AREL1 (ENSACAG00000016610) #18	FCF1 (ENSACAG00000037262) #19	YLPM1 (ENSACAG00000016685) #20	PROX2 (ENSACAG00000016714) #21	DLST (ENSACAG00000016718) #22	RPS6KL1 (ENSACAG00000016769) #23	PGF (ENSACAG00000016795) #24	EIF2B2 (ENSACAG00000016798) #25	MLH3 (ENSACAG00000016842) #26	ENSACAG00000016844 #27	ZC2HC1C (ENSACAG00000016846) #28	NEK9 (ENSACAG00000016850) #29	TMED10 (ENSACAG00000045345) #30	FOS (ENSACAG00000016921) #31	JDP2 (ENSACAG00000042584) #32	BATF (ENSACAG00000016951) #34	FLVCR2 (ENSACAG00000016955) #35	ERG28 (ENSACAG00000038620) #36	ENSACAG00000044320	ENSACAG00000016982
tuatara	MODERN SPECIES	522	ENTPD5 (ENSSPUG00000017101)	BBOF1 (ENSSPUG00000017078)	ALDH6A1 (ENSSPUG00000017066) #7	LIN52 (ENSSPUG00000017058) #9	VSX2 (ENSSPUG00000017050) #11	ENSSPUG00000017032	ABCD4 (ENSSPUG00000017009) #12	ISCA2 (ENSSPUG00000016966) #16	NPC2 (ENSSPUG00000016951) #15	LTBP2 (ENSSPUG00000015468) #17	AREL1 (ENSSPUG00000015123) #18	FCF1 (ENSSPUG00000015109) #19	ENSSPUG00000015096 #20	ENSSPUG00000014971 #20	ENSSPUG00000014927 ##21	DLST (ENSSPUG00000014913) #22	RPS6KL1 (ENSSPUG00000014833) #23	ENSSPUG00000014813 #24	EIF2B2 (ENSSPUG00000014804) #25	MLH3 (ENSSPUG00000014576) #26	ENSSPUG00000014488 #27	ZC2HC1C (ENSSPUG00000014480) #28	NEK9 (ENSSPUG00000014413) #29	TMED10 (ENSSPUG00000014389) #30	FOS (ENSSPUG00000014379) #31	JDP2 (ENSSPUG00000014368) #32	BATF (ENSSPUG00000014361) #34	FLVCR2 (ENSSPUG00000014311) #35	ERG28 (ENSSPUG00000014300) #36	ENSSPUG00000014265	ENSSPUG00000014249
Anura	ANCESTRAL SPECIES	46	ENSGT00390000010698	ENSGT00940000158098	ENSGT00940000159998	ENSGT00390000015152	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110 #7	ENSGT00390000008402 #9	ENSGT00940000157776 #11	ENSGT00950000182955.a.a.b #12	ENSGT00390000005700 #16	ENSGT00390000006223 #15	ENSGT00940000156723 #18	ENSGT00940000153117.B #19	ENSGT00440000039837 #20	ENSGT00930000151014 #22	ENSGT00940000159815 #23	ENSGT00550000074908 #25	ENSGT00800000124176 #26	ENSGT00390000011103.B #27	ENSGT00940000160947 #28	ENSGT00940000156145 #29	ENSGT00940000159276 #31	ENSGT00550000074954 #30	ENSGT00940000161630	ENSGT00940000159745 #34	ENSGT01030000234625.B.d #35	ENSGT00390000010925 #36	ENSGT00940000162910	ENSGT00940000153433.B.b.b	ENSGT00390000012703.b
Frog	MODERN SPECIES	8	fam161b (ENSXETG00000030574)	coq6 (ENSXETG00000002853)	entpd5 (ENSXETG00000030591)	bbof1 (ENSXETG00000002847)	aldh6a1 (ENSXETG00000013304) #7	lin52 (ENSXETG00000027292) #9	vsx2 (ENSXETG00000013302) #11	abcd4 (ENSXETG00000027291) #12	npc2 (ENSXETG00000013295) #15	isca2 (ENSXETG00000031871) #16	arel1 (ENSXETG00000013271) #18	fcf1 (ENSXETG00000027288) #19	ylpm1 (ENSXETG00000013269) #20	ENSXETG00000041959	tmed10 (ENSXETG00000013236) #30	dlst (ENSXETG00000013264) #22	rps6kl1 (ENSXETG00000013263) #23	eif2b2 (ENSXETG00000013261) #25	mlh3 (ENSXETG00000013252) #26	ENSXETG00000040528 #27	ENSXETG00000013249 #28	nek9 (ENSXETG00000013239) #29	fos (ENSXETG00000013238) #31	ENSXETG00000041470	batf (ENSXETG00000046017) #34	flvcr2 (ENSXETG00000027282) #35	erg28 (ENSXETG00000048974) #36	ttll5 (ENSXETG00000013220)	ift43 (ENSXETG00000013218)	esrrb (ENSXETG00000013217)	vash1 (ENSXETG00000013214)