Mus	ANCESTRAL SPECIES	12	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000165681 #20	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000165681 #20	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a.g #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Ryukyu mouse	MODERN SPECIES	15	Gcfc2 (MGP_CAROLIEiJ_G0028526) #7	Lrrtm4 (MGP_CAROLIEiJ_G0028525) #8	Reg3g (MGP_CAROLIEiJ_G0028524) #9	Reg1 (MGP_CAROLIEiJ_G0028523) #10	Reg2 (MGP_CAROLIEiJ_G0028522) #11	Reg3a (MGP_CAROLIEiJ_G0028521) #12	Reg3d (MGP_CAROLIEiJ_G0028520) #13	Reg3b (MGP_CAROLIEiJ_G0028519) #14	Lrrtm1 (MGP_CAROLIEiJ_G0028518) #15	Ctnna2 (MGP_CAROLIEiJ_G0028517) #16	Jkampl (MGP_CAROLIEiJ_G0028516) #17	Suclg1 (MGP_CAROLIEiJ_G0028515) #18	Dnah6 (MGP_CAROLIEiJ_G0028514) #19	Tmsb10 (MGP_CAROLIEiJ_G0028513) #20	Kcmf1 (MGP_CAROLIEiJ_G0028512) #21	Tcf7l1 (MGP_CAROLIEiJ_G0028511) #22	Tgoln1 (MGP_CAROLIEiJ_G0028510) #23	Retsat (MGP_CAROLIEiJ_G0028509) #24	Elmod3 (MGP_CAROLIEiJ_G0028508) #25	Capg (MGP_CAROLIEiJ_G0028507) #26	Sh2d6 (MGP_CAROLIEiJ_G0028506) #27	Mat2a (MGP_CAROLIEiJ_G0028505) #28	Ggcx (MGP_CAROLIEiJ_G0028504) #29	Vamp8 (MGP_CAROLIEiJ_G0028503) #30	Vamp5 (MGP_CAROLIEiJ_G0028502) #31	MGP_CAROLIEiJ_G0028501 #32	Tmem150a (MGP_CAROLIEiJ_G0028500) #33	0610030E20Rik (MGP_CAROLIEiJ_G0028499) #34	Usp39 (MGP_CAROLIEiJ_G0028498) #35	Sftpb (MGP_CAROLIEiJ_G0028497) #36	Atoh8 (MGP_CAROLIEiJ_G0028496) #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000154909 #8	ENSGT00950000184960	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a.g #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000154909 #8	ENSGT00950000184960	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a.g #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
spretus	MODERN SPECIES	15	Lrrtm4 (MGP_SPRETEiJ_G0029531) #8	Gm20594 (MGP_SPRETEiJ_G0029530)	Reg3g (MGP_SPRETEiJ_G0029529) #9	Reg1 (MGP_SPRETEiJ_G0029528) #10	Reg2 (MGP_SPRETEiJ_G0029527) #11	Reg3a (MGP_SPRETEiJ_G0029526) #12	Reg3d (MGP_SPRETEiJ_G0029525) #13	Reg3b (MGP_SPRETEiJ_G0029524) #14	Lrrtm1 (MGP_SPRETEiJ_G0029523) #15	Ctnna2 (MGP_SPRETEiJ_G0029522) #16	Jkampl (MGP_SPRETEiJ_G0029521) #17	Suclg1 (MGP_SPRETEiJ_G0029520) #18	Dnah6 (MGP_SPRETEiJ_G0029519) #19	MGP_SPRETEiJ_G0029518 #20	Kcmf1 (MGP_SPRETEiJ_G0029517) #21	Tcf7l1 (MGP_SPRETEiJ_G0029516) #22	Tgoln1 (MGP_SPRETEiJ_G0029515) #23	Retsat (MGP_SPRETEiJ_G0029514) #24	Elmod3 (MGP_SPRETEiJ_G0029513) #25	Capg (MGP_SPRETEiJ_G0029512) #26	MGP_SPRETEiJ_G0029511 #27	Mat2a (MGP_SPRETEiJ_G0029510) #28	Ggcx (MGP_SPRETEiJ_G0029509) #29	Vamp8 (MGP_SPRETEiJ_G0029508) #30	Vamp5 (MGP_SPRETEiJ_G0029507) #31	Rnf181 (MGP_SPRETEiJ_G0029506)	Tmem150a (MGP_SPRETEiJ_G0029505) #33	0610030E20Rik (MGP_SPRETEiJ_G0029504) #34	Usp39 (MGP_SPRETEiJ_G0029503) #35	Sftpb (MGP_SPRETEiJ_G0029502) #36	Atoh8 (MGP_SPRETEiJ_G0029501) #37
Steppe mouse	MODERN SPECIES	3287				ENSMSIG00000006947	Jkampl (ENSMSIG00000006959) #17	ENSMSIG00000006968	ENSMSIG00000006987	ENSMSIG00000006991	ENSMSIG00000006995	Suclg1 (ENSMSIG00000007008) #18	ENSMSIG00000007054	ENSMSIG00000007062	Dnah6 (ENSMSIG00000007091) #19	Tmsb10b (ENSMSIG00000007285)	Kcmf1 (ENSMSIG00000007304) #21	Tcf7l1 (ENSMSIG00000007365) #22	ENSMSIG00000007493 #23	Retsat (ENSMSIG00000007552) #24	Elmod3 (ENSMSIG00000007675) #25	Capg (ENSMSIG00000007704) #26	Sh2d6 (ENSMSIG00000007788) #27	Mat2a (ENSMSIG00000007887) #28	Ggcx (ENSMSIG00000007972) #29	Vamp8 (ENSMSIG00000008076) #30	ENSMSIG00000008096 #31	ENSMSIG00000008118 #32	Tmem150a (ENSMSIG00000008166) #33	0610030E20Rik (ENSMSIG00000008200) #34	Usp39 (ENSMSIG00000008226) #35	Sftpb (ENSMSIG00000008238) #36	Atoh8 (ENSMSIG00000008291) #37
Mouse	MODERN SPECIES	15	Gm20594 (ENSMUSG00000096887)	Reg3g (ENSMUSG00000030017) #9	Reg1 (ENSMUSG00000059654) #10	Reg2 (ENSMUSG00000023140) #11	Reg3a (ENSMUSG00000079516) #12	Reg3d (ENSMUSG00000068341) #13	Reg3b (ENSMUSG00000071356) #14	Lrrtm1 (ENSMUSG00000060780) #15	Ctnna2 (ENSMUSG00000063063) #16	Gm9008 (ENSMUSG00000072476)	Jkampl (ENSMUSG00000056197) #17	Suclg1 (ENSMUSG00000052738) #18	Dnah6 (ENSMUSG00000052861) #19	Tmsb10 (ENSMUSG00000079523) #20	Kcmf1 (ENSMUSG00000055239) #21	Tcf7l1 (ENSMUSG00000055799) #22	Tgoln1 (ENSMUSG00000056429) #23	Retsat (ENSMUSG00000056666) #24	Elmod3 (ENSMUSG00000056698) #25	Capg (ENSMUSG00000056737) #26	Sh2d6 (ENSMUSG00000052631) #27	Mat2a (ENSMUSG00000053907) #28	Ggcx (ENSMUSG00000053460) #29	Vamp8 (ENSMUSG00000050732) #30	Vamp5 (ENSMUSG00000073002) #31	Rnf181 (ENSMUSG00000055850)	Tmem150a (ENSMUSG00000055912) #33	0610030E20Rik (ENSMUSG00000058706) #34	Usp39 (ENSMUSG00000056305) #35	Sftpb (ENSMUSG00000056370) #36	Atoh8 (ENSMUSG00000037621) #37
Shrew mouse	MODERN SPECIES	11	Gcfc2 (MGP_PahariEiJ_G0022261) #7	Lrrtm4 (MGP_PahariEiJ_G0022260) #8	Reg3g (MGP_PahariEiJ_G0022259) #9	Reg1 (MGP_PahariEiJ_G0022258) #10	Reg2 (MGP_PahariEiJ_G0022257) #11	Reg3a (MGP_PahariEiJ_G0022256) #12	MGP_PahariEiJ_G0022255	Reg3b (MGP_PahariEiJ_G0022254) #14	Lrrtm1 (MGP_PahariEiJ_G0022253) #15	Ctnna2 (MGP_PahariEiJ_G0022252) #16	Jkampl (MGP_PahariEiJ_G0022251) #17	Suclg1 (MGP_PahariEiJ_G0022250) #18	Dnah6 (MGP_PahariEiJ_G0022249) #19	Tmsb10 (MGP_PahariEiJ_G0022248) #20	Kcmf1 (MGP_PahariEiJ_G0022247) #21	Tcf7l1 (MGP_PahariEiJ_G0022246) #22	MGP_PahariEiJ_G0022245 #23	Retsat (MGP_PahariEiJ_G0022244) #24	Elmod3 (MGP_PahariEiJ_G0022243) #25	Capg (MGP_PahariEiJ_G0022242) #26	Sh2d6 (MGP_PahariEiJ_G0022241) #27	Mat2a (MGP_PahariEiJ_G0022240) #28	Ggcx (MGP_PahariEiJ_G0022239) #29	Vamp8 (MGP_PahariEiJ_G0022238) #30	Rnf181 (MGP_PahariEiJ_G0022237)	Tmem150a (MGP_PahariEiJ_G0022236) #33	0610030E20Rik (MGP_PahariEiJ_G0022235) #34	Usp39 (MGP_PahariEiJ_G0022234) #35	Sftpb (MGP_PahariEiJ_G0022233) #36	Atoh8 (MGP_PahariEiJ_G0022232) #37	St3gal5 (MGP_PahariEiJ_G0022231)