Glires	ANCESTRAL SPECIES	13	ENSGT00940000153745.a	ENSGT00940000154096.b.b.b.a	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000162300	ENSGT00940000162393 #10	ENSGT00940000154447 #9	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000153745.a	ENSGT00940000154096.b.b.b.a	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000154447.z ##9	ENSGT00940000162300	ENSGT00940000162393 #10	ENSGT00940000154447.y.a #9	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00940000160888	ENSGT00940000153745.a	ENSGT00940000154096.b.b.b.a	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000154447.y.a #9	ENSGT00940000162393 #10	ENSGT00940000162300	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Myomorpha	ANCESTRAL SPECIES	37	ENSGT00940000153745.a	ENSGT00940000154096.b.b.b.a	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393 #10	ENSGT00940000162300	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Muroidea	ANCESTRAL SPECIES	38	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393 #10	ENSGT00940000162300	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000162300	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000165681 #20	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Mus	ANCESTRAL SPECIES	12	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000165681 #20	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000165681 #20	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a.g #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Ryukyu mouse	MODERN SPECIES	15	Gcfc2 (MGP_CAROLIEiJ_G0028526) #7	Lrrtm4 (MGP_CAROLIEiJ_G0028525) #8	Reg3g (MGP_CAROLIEiJ_G0028524) #9	Reg1 (MGP_CAROLIEiJ_G0028523) #10	Reg2 (MGP_CAROLIEiJ_G0028522) #11	Reg3a (MGP_CAROLIEiJ_G0028521) #12	Reg3d (MGP_CAROLIEiJ_G0028520) #13	Reg3b (MGP_CAROLIEiJ_G0028519) #14	Lrrtm1 (MGP_CAROLIEiJ_G0028518) #15	Ctnna2 (MGP_CAROLIEiJ_G0028517) #16	Jkampl (MGP_CAROLIEiJ_G0028516) #17	Suclg1 (MGP_CAROLIEiJ_G0028515) #18	Dnah6 (MGP_CAROLIEiJ_G0028514) #19	Tmsb10 (MGP_CAROLIEiJ_G0028513) #20	Kcmf1 (MGP_CAROLIEiJ_G0028512) #21	Tcf7l1 (MGP_CAROLIEiJ_G0028511) #22	Tgoln1 (MGP_CAROLIEiJ_G0028510) #23	Retsat (MGP_CAROLIEiJ_G0028509) #24	Elmod3 (MGP_CAROLIEiJ_G0028508) #25	Capg (MGP_CAROLIEiJ_G0028507) #26	Sh2d6 (MGP_CAROLIEiJ_G0028506) #27	Mat2a (MGP_CAROLIEiJ_G0028505) #28	Ggcx (MGP_CAROLIEiJ_G0028504) #29	Vamp8 (MGP_CAROLIEiJ_G0028503) #30	Vamp5 (MGP_CAROLIEiJ_G0028502) #31	MGP_CAROLIEiJ_G0028501 #32	Tmem150a (MGP_CAROLIEiJ_G0028500) #33	0610030E20Rik (MGP_CAROLIEiJ_G0028499) #34	Usp39 (MGP_CAROLIEiJ_G0028498) #35	Sftpb (MGP_CAROLIEiJ_G0028497) #36	Atoh8 (MGP_CAROLIEiJ_G0028496) #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000154909 #8	ENSGT00950000184960	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a.g #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000154909 #8	ENSGT00950000184960	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a.g #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
spretus	MODERN SPECIES	15	Lrrtm4 (MGP_SPRETEiJ_G0029531) #8	Gm20594 (MGP_SPRETEiJ_G0029530)	Reg3g (MGP_SPRETEiJ_G0029529) #9	Reg1 (MGP_SPRETEiJ_G0029528) #10	Reg2 (MGP_SPRETEiJ_G0029527) #11	Reg3a (MGP_SPRETEiJ_G0029526) #12	Reg3d (MGP_SPRETEiJ_G0029525) #13	Reg3b (MGP_SPRETEiJ_G0029524) #14	Lrrtm1 (MGP_SPRETEiJ_G0029523) #15	Ctnna2 (MGP_SPRETEiJ_G0029522) #16	Jkampl (MGP_SPRETEiJ_G0029521) #17	Suclg1 (MGP_SPRETEiJ_G0029520) #18	Dnah6 (MGP_SPRETEiJ_G0029519) #19	MGP_SPRETEiJ_G0029518 #20	Kcmf1 (MGP_SPRETEiJ_G0029517) #21	Tcf7l1 (MGP_SPRETEiJ_G0029516) #22	Tgoln1 (MGP_SPRETEiJ_G0029515) #23	Retsat (MGP_SPRETEiJ_G0029514) #24	Elmod3 (MGP_SPRETEiJ_G0029513) #25	Capg (MGP_SPRETEiJ_G0029512) #26	MGP_SPRETEiJ_G0029511 #27	Mat2a (MGP_SPRETEiJ_G0029510) #28	Ggcx (MGP_SPRETEiJ_G0029509) #29	Vamp8 (MGP_SPRETEiJ_G0029508) #30	Vamp5 (MGP_SPRETEiJ_G0029507) #31	Rnf181 (MGP_SPRETEiJ_G0029506)	Tmem150a (MGP_SPRETEiJ_G0029505) #33	0610030E20Rik (MGP_SPRETEiJ_G0029504) #34	Usp39 (MGP_SPRETEiJ_G0029503) #35	Sftpb (MGP_SPRETEiJ_G0029502) #36	Atoh8 (MGP_SPRETEiJ_G0029501) #37
Steppe mouse	MODERN SPECIES	3287				ENSMSIG00000006947	Jkampl (ENSMSIG00000006959) #17	ENSMSIG00000006968	ENSMSIG00000006987	ENSMSIG00000006991	ENSMSIG00000006995	Suclg1 (ENSMSIG00000007008) #18	ENSMSIG00000007054	ENSMSIG00000007062	Dnah6 (ENSMSIG00000007091) #19	Tmsb10b (ENSMSIG00000007285)	Kcmf1 (ENSMSIG00000007304) #21	Tcf7l1 (ENSMSIG00000007365) #22	ENSMSIG00000007493 #23	Retsat (ENSMSIG00000007552) #24	Elmod3 (ENSMSIG00000007675) #25	Capg (ENSMSIG00000007704) #26	Sh2d6 (ENSMSIG00000007788) #27	Mat2a (ENSMSIG00000007887) #28	Ggcx (ENSMSIG00000007972) #29	Vamp8 (ENSMSIG00000008076) #30	ENSMSIG00000008096 #31	ENSMSIG00000008118 #32	Tmem150a (ENSMSIG00000008166) #33	0610030E20Rik (ENSMSIG00000008200) #34	Usp39 (ENSMSIG00000008226) #35	Sftpb (ENSMSIG00000008238) #36	Atoh8 (ENSMSIG00000008291) #37
Mouse	MODERN SPECIES	15	Gm20594 (ENSMUSG00000096887)	Reg3g (ENSMUSG00000030017) #9	Reg1 (ENSMUSG00000059654) #10	Reg2 (ENSMUSG00000023140) #11	Reg3a (ENSMUSG00000079516) #12	Reg3d (ENSMUSG00000068341) #13	Reg3b (ENSMUSG00000071356) #14	Lrrtm1 (ENSMUSG00000060780) #15	Ctnna2 (ENSMUSG00000063063) #16	Gm9008 (ENSMUSG00000072476)	Jkampl (ENSMUSG00000056197) #17	Suclg1 (ENSMUSG00000052738) #18	Dnah6 (ENSMUSG00000052861) #19	Tmsb10 (ENSMUSG00000079523) #20	Kcmf1 (ENSMUSG00000055239) #21	Tcf7l1 (ENSMUSG00000055799) #22	Tgoln1 (ENSMUSG00000056429) #23	Retsat (ENSMUSG00000056666) #24	Elmod3 (ENSMUSG00000056698) #25	Capg (ENSMUSG00000056737) #26	Sh2d6 (ENSMUSG00000052631) #27	Mat2a (ENSMUSG00000053907) #28	Ggcx (ENSMUSG00000053460) #29	Vamp8 (ENSMUSG00000050732) #30	Vamp5 (ENSMUSG00000073002) #31	Rnf181 (ENSMUSG00000055850)	Tmem150a (ENSMUSG00000055912) #33	0610030E20Rik (ENSMUSG00000058706) #34	Usp39 (ENSMUSG00000056305) #35	Sftpb (ENSMUSG00000056370) #36	Atoh8 (ENSMUSG00000037621) #37
Shrew mouse	MODERN SPECIES	11	Gcfc2 (MGP_PahariEiJ_G0022261) #7	Lrrtm4 (MGP_PahariEiJ_G0022260) #8	Reg3g (MGP_PahariEiJ_G0022259) #9	Reg1 (MGP_PahariEiJ_G0022258) #10	Reg2 (MGP_PahariEiJ_G0022257) #11	Reg3a (MGP_PahariEiJ_G0022256) #12	MGP_PahariEiJ_G0022255	Reg3b (MGP_PahariEiJ_G0022254) #14	Lrrtm1 (MGP_PahariEiJ_G0022253) #15	Ctnna2 (MGP_PahariEiJ_G0022252) #16	Jkampl (MGP_PahariEiJ_G0022251) #17	Suclg1 (MGP_PahariEiJ_G0022250) #18	Dnah6 (MGP_PahariEiJ_G0022249) #19	Tmsb10 (MGP_PahariEiJ_G0022248) #20	Kcmf1 (MGP_PahariEiJ_G0022247) #21	Tcf7l1 (MGP_PahariEiJ_G0022246) #22	MGP_PahariEiJ_G0022245 #23	Retsat (MGP_PahariEiJ_G0022244) #24	Elmod3 (MGP_PahariEiJ_G0022243) #25	Capg (MGP_PahariEiJ_G0022242) #26	Sh2d6 (MGP_PahariEiJ_G0022241) #27	Mat2a (MGP_PahariEiJ_G0022240) #28	Ggcx (MGP_PahariEiJ_G0022239) #29	Vamp8 (MGP_PahariEiJ_G0022238) #30	Rnf181 (MGP_PahariEiJ_G0022237)	Tmem150a (MGP_PahariEiJ_G0022236) #33	0610030E20Rik (MGP_PahariEiJ_G0022235) #34	Usp39 (MGP_PahariEiJ_G0022234) #35	Sftpb (MGP_PahariEiJ_G0022233) #36	Atoh8 (MGP_PahariEiJ_G0022232) #37	St3gal5 (MGP_PahariEiJ_G0022231)
Rat	MODERN SPECIES	14	Lrrtm4 (ENSRNOG00000021938) #8	Reg3g (ENSRNOG00000006579) #9	Reg1a (ENSRNOG00000006486) #10	Reg3a (ENSRNOG00000006360) #12	Reg3b (ENSRNOG00000006151) #14	LRRTM1 (ENSRNOG00000006093) #15	Ctnna2 (ENSRNOG00000006003) #16	ENSRNOG00000066158	ENSRNOG00000071146	Ptbp1-ps3 (ENSRNOG00000070516)	Jkampl (ENSRNOG00000024604) #17	Suclg1 (ENSRNOG00000005587) #18	Dnah6 (ENSRNOG00000015581) #19	Tmsb10 (ENSRNOG00000064090) #20	Kcmf1 (ENSRNOG00000015097) #21	Tcf7l1 (ENSRNOG00000014753) #22	Tgoln2 (ENSRNOG00000014617) #23	Retsat (ENSRNOG00000014090) #24	Elmod3 (ENSRNOG00000038102) #25	Capg (ENSRNOG00000013668) #26	Sh2d6 (ENSRNOG00000013605) #27	Mat2a (ENSRNOG00000013520) #28	Ggcx (ENSRNOG00000012975) #29	Vamp8 (ENSRNOG00000012748) #30	Vamp5 (ENSRNOG00000012659) #31	Rnf181 (ENSRNOG00000012035) #32	Tmem150a (ENSRNOG00000061100) #33	LOC691113 (ENSRNOG00000011713) #34	Usp39 (ENSRNOG00000010930) #35	Sftpb (ENSRNOG00000010761) #36	Atoh8 (ENSRNOG00000010716) #37
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000162300	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909.g #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.b #11	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909.g #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Prairie vole	MODERN SPECIES	83	ENSMOCG00000000151	Lrrtm4 (ENSMOCG00000008317) #8	ENSMOCG00000015470	ENSMOCG00000003469	Reg3g (ENSMOCG00000000838) #9	Reg2 (ENSMOCG00000019434) #11	Reg3b (ENSMOCG00000000127) #14	ENSMOCG00000019395 #16	Lrrtm1 (ENSMOCG00000015921) #15	ENSMOCG00000016382 #16	ENSMOCG00000004435	Suclg1 (ENSMOCG00000021421) #18	Dnah6 (ENSMOCG00000002417) #19	ENSMOCG00000012602	Kcmf1 (ENSMOCG00000003279) #21	Tcf7l1 (ENSMOCG00000012953) #22	ENSMOCG00000000091 #23	Retsat (ENSMOCG00000021447) #24	ENSMOCG00000000675	ENSMOCG00000002524	Elmod3 (ENSMOCG00000015870) #25	Capg (ENSMOCG00000005806) #26	Sh2d6 (ENSMOCG00000015508) #27	ENSMOCG00000011611 #28	Ggcx (ENSMOCG00000017281) #29	Vamp8 (ENSMOCG00000004037) #30	Vamp5 (ENSMOCG00000014948) #31	ENSMOCG00000020563 #32	Tmem150a (ENSMOCG00000012440) #33	0610030E20Rik (ENSMOCG00000022948) #34	Usp39 (ENSMOCG00000014162) #35
Northern American deer mouse	MODERN SPECIES	16	ENSPEMG00000014440 #13	Reg3b (ENSPEMG00000009322) #14	Lrrtm1 (ENSPEMG00000019466) #15	ENSPEMG00000024773	Ctnna2 (ENSPEMG00000019898) #16	ENSPEMG00000028022	ENSPEMG00000029707	ENSPEMG00000024691	ENSPEMG00000029513	Jkampl (ENSPEMG00000024694) #17	Suclg1 (ENSPEMG00000010810) #18	Dnah6 (ENSPEMG00000023939) #19	ENSPEMG00000030958	ENSPEMG00000026592	Kcmf1 (ENSPEMG00000029405) #21	Tcf7l1 (ENSPEMG00000004714) #22	Tgoln1 (ENSPEMG00000007145) #23	Retsat (ENSPEMG00000011191) #24	Elmod3 (ENSPEMG00000010510) #25	Capg (ENSPEMG00000018215) #26	Sh2d6 (ENSPEMG00000016371) #27	Mat2a (ENSPEMG00000015257) #28	Ggcx (ENSPEMG00000013327) #29	Vamp8 (ENSPEMG00000029313) #30	Vamp5 (ENSPEMG00000027040) #31	ENSPEMG00000010283 #32	Tmem150a (ENSPEMG00000018551) #33	0610030E20Rik (ENSPEMG00000025650) #34	Usp39 (ENSPEMG00000030030) #35	Sftpb (ENSPEMG00000013792) #36	Atoh8 (ENSPEMG00000014683) #37
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000154447.y.a.a #9	ENSGT00940000162393.a #10	ENSGT00940000162393.b #11	ENSGT00940000162300	ENSGT00940000154447.y.b.b #12	ENSGT00940000154447.y.b.a #13	ENSGT00940000154447.y.a.b #14	ENSGT01030000234543.A.a #16	ENSGT00390000018097.j #17	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909.g #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Chinese hamster chok1gshd	MODERN SPECIES	242	ENSCGRG00001015880	ENSCGRG00001016319	Reg3g (ENSCGRG00001014964) #9	Reg1 (ENSCGRG00001015288) #10	Reg2 (ENSCGRG00001016071) #11	ENSCGRG00001016649	Reg3d (ENSCGRG00001017441) #13	Reg3b (ENSCGRG00001018138) #14	Ctnna2 (ENSCGRG00001000241) #16	Jkampl (ENSCGRG00001016234) #17	Suclg1 (ENSCGRG00001007965) #18	Dnah6 (ENSCGRG00001001087) #19	ENSCGRG00001017576	Tmsb10b (ENSCGRG00001017927)	Kcmf1 (ENSCGRG00001018737) #21	Tcf7l1 (ENSCGRG00001021396) #22	ENSCGRG00001022789 #23	Retsat (ENSCGRG00001023894) #24	Elmod3 (ENSCGRG00001000477) #25	Capg (ENSCGRG00001001836) #26	Sh2d6 (ENSCGRG00001007691) #27	Mat2a (ENSCGRG00001010053) #28	Ggcx (ENSCGRG00001012860) #29	Vamp8 (ENSCGRG00001014727) #30	Vamp5 (ENSCGRG00001015261) #31	Tmem150a (ENSCGRG00001016577) #33	Rnf181 (ENSCGRG00001017863)	0610030E20Rik (ENSCGRG00001019313) #34	Usp39 (ENSCGRG00001019807) #35	Sftpb (ENSCGRG00001020533) #36	Atoh8 (ENSCGRG00001000824) #37
Golden Hamster	MODERN SPECIES	698	Lrrtm4 (ENSMAUG00000021688) #8	ENSMAUG00000020837	Reg3gamma (ENSMAUG00000013518) #9	Reg2 (ENSMAUG00000000796) #11	ENSMAUG00000009913 #12	Reg3d (ENSMAUG00000001387) #13	Reg3b (ENSMAUG00000004298) #14	ENSMAUG00000015429	Lrrtm1 (ENSMAUG00000020167) #15	ENSMAUG00000011430	Ctnna2 (ENSMAUG00000000931) #16	Suclg1 (ENSMAUG00000020136) #18	Dnah6 (ENSMAUG00000016714) #19	Tmsb10b (ENSMAUG00000019611)	ENSMAUG00000014740 #21	Tcf7l1 (ENSMAUG00000015617) #22	ENSMAUG00000018817 #23	Retsat (ENSMAUG00000005648) #24	Elmod3 (ENSMAUG00000009226) #25	Capg (ENSMAUG00000001858) #26
Upper Galilee mountains blind mole rat	MODERN SPECIES	1096								ENSNGAG00000009815	Jkampl (ENSNGAG00000013694) #17	ENSNGAG00000023092	Suclg1 (ENSNGAG00000015283) #18	ENSNGAG00000013792	Dnah6 (ENSNGAG00000013760) #19	Tmsb10b (ENSNGAG00000016585)	ENSNGAG00000017279 #21	Tcf7l1 (ENSNGAG00000020122) #22	Retsat (ENSNGAG00000007772) #24	Elmod3 (ENSNGAG00000017699) #25	Capg (ENSNGAG00000019315) #26	Sh2d6 (ENSNGAG00000000856) #27	Mat2a (ENSNGAG00000014289) #28	Ggcx (ENSNGAG00000000695) #29	ENSNGAG00000014911 #30	Vamp5 (ENSNGAG00000022303) #31	ENSNGAG00000010364 #32	Tmem150a (ENSNGAG00000000493) #33	0610030E20Rik (ENSNGAG00000012174) #34	Usp39 (ENSNGAG00000018760) #35	Sftpb (ENSNGAG00000020909) #36	Atoh8 (ENSNGAG00000017424) #37	ENSNGAG00000017959
Lesser Egyptian jerboa	MODERN SPECIES	77	ENSJJAG00000023603	ENSJJAG00000020877 #10	Lrrtm1 (ENSJJAG00000021646) #15	Ctnna2 (ENSJJAG00000020758) #16	ENSJJAG00000014736	ENSJJAG00000024130	ENSJJAG00000014417	ENSJJAG00000001553	Suclg1 (ENSJJAG00000023782) #18	ENSJJAG00000020479	Dnah6 (ENSJJAG00000013999) #19	ENSJJAG00000009987	ENSJJAG00000006387	Kcmf1 (ENSJJAG00000020771) #21	ENSJJAG00000010136	Tcf7l1 (ENSJJAG00000023485) #22	ENSJJAG00000022764	Retsat (ENSJJAG00000018206) #24	Elmod3 (ENSJJAG00000015903) #25	Capg (ENSJJAG00000011988) #26	Sh2d6 (ENSJJAG00000011036) #27	Mat2a (ENSJJAG00000019942) #28	Ggcx (ENSJJAG00000013219) #29	Vamp8 (ENSJJAG00000023575) #30	Vamp5 (ENSJJAG00000021713) #31	ENSJJAG00000012435 #32	Tmem150a (ENSJJAG00000015485) #33	Sftpb (ENSJJAG00000020339) #36	Atoh8 (ENSJJAG00000003684) #37	St3gal5 (ENSJJAG00000012802)	Polr1a (ENSJJAG00000013113)
Kangaroo rat	MODERN SPECIES	528												Suclg1 (ENSDORG00000010991) #18	Dnah6 (ENSDORG00000000400) #19	Tmsb10b (ENSDORG00000025129)	Kcmf1 (ENSDORG00000029229) #21	Tcf7l1 (ENSDORG00000013753) #22	Retsat (ENSDORG00000009720) #24	Elmod3 (ENSDORG00000009721) #25	Capg (ENSDORG00000009722) #26	Sh2d6 (ENSDORG00000013882) #27	Mat2a (ENSDORG00000011312) #28	Ggcx (ENSDORG00000006726) #29	Vamp8 (ENSDORG00000010738) #30	Vamp5 (ENSDORG00000027327) #31	ENSDORG00000010740 #32	Tmem150a (ENSDORG00000010742) #33	0610030E20Rik (ENSDORG00000030143) #34	Usp39 (ENSDORG00000010746) #35	Sftpb (ENSDORG00000010751) #36	Atoh8 (ENSDORG00000028892) #37	St3gal5 (ENSDORG00000008296)
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000160888	ENSGT00940000153745.a	ENSGT00940000154096.b.b.b.a	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000162300	ENSGT00940000162393 #10	ENSGT00940000154447.z ##9	ENSGT00940000161705 #15	ENSGT01030000234543.A.a #16	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171.n #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000160888	ENSGT00940000153745.a	ENSGT00940000154096.b.b.b.a	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000154447.z.e.b ##9	ENSGT00940000154447.z.e.a ##9	ENSGT00940000154447.z.f ##9	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171.n #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00940000160888	ENSGT00940000153745.a	ENSGT00940000154096.b.b.b.a	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000154447.z.e.b ##9	ENSGT00940000154447.z.e.a ##9	ENSGT00940000154447.z.f ##9	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171.n #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00940000160888	ENSGT00940000153745.a	ENSGT00940000154096.b.b.b.a	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154909 #8	ENSGT00940000154447.z.e.b ##9	ENSGT00940000154447.z.e.a ##9	ENSGT00940000154447.z.f ##9	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000163007	ENSGT00510000047171.n #21	ENSGT00940000157038 #22	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37	ENSGT00940000157929
Degu	MODERN SPECIES	203										ENSODEG00000002222	ENSODEG00000002212	SUCLG1 (ENSODEG00000002195) #18	DNAH6 (ENSODEG00000003756) #19	ENSODEG00000003596	ENSODEG00000003586 #21	TCF7L1 (ENSODEG00000003559) #22	RETSAT (ENSODEG00000003469) #24	ELMOD3 (ENSODEG00000003393) #25	CAPG (ENSODEG00000003321) #26	ENSODEG00000018929	SH2D6 (ENSODEG00000003239) #27	ENSODEG00000003186 #28	GGCX (ENSODEG00000003141) #29	VAMP8 (ENSODEG00000003107) #30	VAMP5 (ENSODEG00000003093) #31	RNF181 (ENSODEG00000003046) #32	TMEM150A (ENSODEG00000003753) #33	C2orf68 (ENSODEG00000003734) #34	USP39 (ENSODEG00000003717) #35	SFTPB (ENSODEG00000003695) #36	ATOH8 (ENSODEG00000003670) #37
Long-tailed chinchilla	MODERN SPECIES	131	EVA1A (ENSCLAG00000004417)	MRPL19 (ENSCLAG00000016582)	GCFC2 (ENSCLAG00000012347) #7	LRRTM4 (ENSCLAG00000007091) #8	ENSCLAG00000006062	ENSCLAG00000005804 ##9	ENSCLAG00000006327 ##9	ENSCLAG00000005858 ##9	LRRTM1 (ENSCLAG00000005364) #15	CTNNA2 (ENSCLAG00000013755) #16	ENSCLAG00000009325	SUCLG1 (ENSCLAG00000008580) #18	DNAH6 (ENSCLAG00000006035) #19	TMSB10 (ENSCLAG00000010365)	KCMF1 (ENSCLAG00000009986) #21	TCF7L1 (ENSCLAG00000007414) #22	RETSAT (ENSCLAG00000008939) #24	ELMOD3 (ENSCLAG00000009003) #25	CAPG (ENSCLAG00000004481) #26	ENSCLAG00000006141 #27	MAT2A (ENSCLAG00000007205) #28	GGCX (ENSCLAG00000005838) #29	VAMP8 (ENSCLAG00000008880) #30	VAMP5 (ENSCLAG00000009915) #31	RNF181 (ENSCLAG00000006082) #32	TMEM150A (ENSCLAG00000005500) #33	C2orf68 (ENSCLAG00000009438) #34	USP39 (ENSCLAG00000006866) #35	SFTPB (ENSCLAG00000006471) #36	ATOH8 (ENSCLAG00000006142) #37	ST3GAL5 (ENSCLAG00000006950)
Guinea pig	MODERN SPECIES	37	POLE4 (ENSCPOG00000036220)	TACR1 (ENSCPOG00000036008)	EVA1A (ENSCPOG00000031202)	MRPL19 (ENSCPOG00000024548)	GCFC2 (ENSCPOG00000002225) #7	LRRTM4 (ENSCPOG00000012033) #8	ENSCPOG00000020711 ##9	ENSCPOG00000014439 ##9	ENSCPOG00000004885 ##9	ENSCPOG00000032214	LRRTM1 (ENSCPOG00000001371) #15	CTNNA2 (ENSCPOG00000023564) #16	SUCLG1 (ENSCPOG00000003017) #18	DNAH6 (ENSCPOG00000015041) #19	KCMF1 (ENSCPOG00000023050) #21	TCF7L1 (ENSCPOG00000014492) #22	ENSCPOG00000037555 #23	RETSAT (ENSCPOG00000022640) #24	ELMOD3 (ENSCPOG00000007973) #25	CAPG (ENSCPOG00000007978) #26	ENSCPOG00000012229 #27	MAT2A (ENSCPOG00000001533) #28	GGCX (ENSCPOG00000001534) #29	VAMP8 (ENSCPOG00000001409) #30	VAMP5 (ENSCPOG00000021802) #31	RNF181 (ENSCPOG00000001938) #32	TMEM150A (ENSCPOG00000025516) #33	C2orf68 (ENSCPOG00000009311) #34	USP39 (ENSCPOG00000009315) #35	SFTPB (ENSCPOG00000035291) #36	ATOH8 (ENSCPOG00000006364) #37
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000008059 ##9	ENSHGLG00000007734 ##9	ENSHGLG00000007074	ENSHGLG00000005143 #16	ENSHGLG00000045424 #15	ENSHGLG00000021375	ENSHGLG00000050728	ENSHGLG00000016889	ENSHGLG00000016878	ENSHGLG00000020983	SUCLG1 (ENSHGLG00000047475) #18	ENSHGLG00000016621 #19	ENSHGLG00000039609	ENSHGLG00000036565 #21	ENSHGLG00000049290	TCF7L1 (ENSHGLG00000044140) #22	ENSHGLG00000007230 #23	RETSAT (ENSHGLG00000009788) #24	ENSHGLG00000005816 #25	ENSHGLG00000043435	CAPG (ENSHGLG00000004995) #26	SH2D6 (ENSHGLG00000016223) #27	MAT2A (ENSHGLG00000018376) #28	GGCX (ENSHGLG00000013929) #29	VAMP8 (ENSHGLG00000012997) #30	ENSHGLG00000012613 #31	RNF181 (ENSHGLG00000045564) #32	TMEM150A (ENSHGLG00000010994) #33	C2orf68 (ENSHGLG00000036696) #34	USP39 (ENSHGLG00000015846) #35	SFTPB (ENSHGLG00000016430) #36
Sciuridae	ANCESTRAL SPECIES	53														ENSGT00940000163478	ENSGT00390000004352	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Marmotini	ANCESTRAL SPECIES	86													ENSGT00940000163478	ENSGT00390000004352	ENSGT00940000153165.a.a.c.a.i.b.b.b.a.a	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Marmotini_b	ANCESTRAL SPECIES	128													ENSGT00940000163478	ENSGT00390000004352	ENSGT00940000153165.a.a.c.a.i.b.b.b.a.a	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000154129.m.r.b
Arctic ground squirrel	MODERN SPECIES	609													IGKC (ENSUPAG00010018047)	RPIA (ENSUPAG00010018051)	ENSUPAG00010018060	TCF7L1 (ENSUPAG00010018088) #22	ENSUPAG00010018102 #23	RETSAT (ENSUPAG00010018105) #24	ELMOD3 (ENSUPAG00010018158) #25	CAPG (ENSUPAG00010018187) #26	SH2D6 (ENSUPAG00010018214) #27	MAT2A (ENSUPAG00010000075) #28	GGCX (ENSUPAG00010000144) #29	VAMP8 (ENSUPAG00010000178) #30	ENSUPAG00010000192 #31	TMEM150A (ENSUPAG00010000226) #33	RNF181 (ENSUPAG00010000242) #32	ENSUPAG00010000260 #34	USP39 (ENSUPAG00010000286) #35	SFTPB (ENSUPAG00010000319) #36	ENSUPAG00010000360
Squirrel	MODERN SPECIES	312													RPIA (ENSSTOG00000023312)	ENSSTOG00000034297	ENSSTOG00000031036	TCF7L1 (ENSSTOG00000021988) #22	ENSSTOG00000020177 #23	RETSAT (ENSSTOG00000026131) #24	ELMOD3 (ENSSTOG00000009420) #25	CAPG (ENSSTOG00000009431) #26	ENSSTOG00000010788 #27	MAT2A (ENSSTOG00000010796) #28	GGCX (ENSSTOG00000010797) #29	VAMP8 (ENSSTOG00000005962) #30	VAMP5 (ENSSTOG00000005966) #31	RNF181 (ENSSTOG00000005973) #32	TMEM150A (ENSSTOG00000023355) #33	C2orf68 (ENSSTOG00000032886) #34	USP39 (ENSSTOG00000015986) #35	SFTPB (ENSSTOG00000026197) #36	ENSSTOG00000033478
Alpin marmot	MODERN SPECIES	118						ENSMMMG00000006958	ENSMMMG00000006993	ENSMMMG00000007004	ENSMMMG00000007007	ENSMMMG00000007012	ENSMMMG00000007026	RPIA (ENSMMMG00000007477)	ENSMMMG00000007572	ENSMMMG00000007617	ENSMMMG00000007627	TCF7L1 (ENSMMMG00000007633) #22	ENSMMMG00000007682 #23	RETSAT (ENSMMMG00000007689) #24	ENSMMMG00000007785 #25	CAPG (ENSMMMG00000007822) #26	ENSMMMG00000007857 #27	MAT2A (ENSMMMG00000007871) #28	GGCX (ENSMMMG00000008142) #29	VAMP8 (ENSMMMG00000008162) #30	VAMP5 (ENSMMMG00000008168) #31	RNF181 (ENSMMMG00000008179) #32	TMEM150A (ENSMMMG00000008189) #33	USP39 (ENSMMMG00000008203) #35	ENSMMMG00000008853 #34	SFTPB (ENSMMMG00000008881) #36	ST3GAL5 (ENSMMMG00000008911)
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005019804	ENSSVLG00005019740	ENSSVLG00005019684	ENSSVLG00005019625	ENSSVLG00005019592	ENSSVLG00005019561	ENSSVLG00005019516	IGKC (ENSSVLG00005019486)	RPIA (ENSSVLG00005019426)	ENSSVLG00005019400	ENSSVLG00005019338	ENSSVLG00005019271	ENSSVLG00005018002	ENSSVLG00005017863	ENSSVLG00005017786	TCF7L1 (ENSSVLG00005017741) #22	ENSSVLG00005017693 #23	RETSAT (ENSSVLG00005017559) #24	ELMOD3 (ENSSVLG00005017414) #25	CAPG (ENSSVLG00005017210) #26	ENSSVLG00005017177	SH2D6 (ENSSVLG00005016979) #27	MAT2A (ENSSVLG00005016926) #28	ENSSVLG00005016868	GGCX (ENSSVLG00005016698) #29	VAMP8 (ENSSVLG00005016627) #30	VAMP5 (ENSSVLG00005016585) #31	RNF181 (ENSSVLG00005016555) #32	TMEM150A (ENSSVLG00005016477) #33	ENSSVLG00005016431 #34	USP39 (ENSSVLG00005016257) #35
Lagomorpha	ANCESTRAL SPECIES	47	ENSGT00950000182787.C	ENSGT00940000153745.a	ENSGT00940000154096.b.b.b.a	ENSGT00390000009415	ENSGT00390000000455.b #7	ENSGT00940000154447.`b #9	ENSGT00940000162393 #10	ENSGT00940000154447.ab #9	ENSGT01030000234543.A.a #16	ENSGT00940000161705 #15	ENSGT00940000156351 #18	ENSGT00940000154761 #19	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00910000146589	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Pika	MODERN SPECIES	2775																TCF7L1 (ENSOPRG00000014672) #22	RETSAT (ENSOPRG00000014695) #24	ELMOD3 (ENSOPRG00000014718) #25	CAPG (ENSOPRG00000014744) #26
Rabbit	MODERN SPECIES	11	ENSOCUG00000030492	LRRTM1 (ENSOCUG00000005244) #15	ENSOCUG00000035825	CTNNA2 (ENSOCUG00000029576) #16	ENSOCUG00000027129	ENSOCUG00000006135	ENSOCUG00000023783 #32	SUCLG1 (ENSOCUG00000003780) #18	ENSOCUG00000032531	ENSOCUG00000031742	DNAH6 (ENSOCUG00000010057) #19	TMSB10 (ENSOCUG00000017506)	TRABD2A (ENSOCUG00000010075)	ENSOCUG00000035044 #21	ENSOCUG00000002533 #21	TCF7L1 (ENSOCUG00000008749) #22	ENSOCUG00000008764 #23	RETSAT (ENSOCUG00000026865) #24	ELMOD3 (ENSOCUG00000002332) #25	CAPG (ENSOCUG00000002341) #26	ENSOCUG00000039138	MAT2A (ENSOCUG00000002361) #28	GGCX (ENSOCUG00000002368) #29	VAMP8 (ENSOCUG00000002375) #30	VAMP5 (ENSOCUG00000025906) #31	ENSOCUG00000007951 #32	TMEM150A (ENSOCUG00000007956) #33	ENSOCUG00000010066 #34	USP39 (ENSOCUG00000010070) #35	ENSOCUG00000020733 #36	ATOH8 (ENSOCUG00000003528) #37