Murinae	ANCESTRAL SPECIES	4	ENSGT00940000154909	ENSGT00940000154447.y.a.a	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b	ENSGT00940000154447.y.b.a	ENSGT00940000154447.y.a.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j #11	ENSGT00940000156351 #16	ENSGT00940000154761 #19	ENSGT00940000165681	ENSGT00940000163007 #20	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Mus	ANCESTRAL SPECIES	12	ENSGT00940000154909	ENSGT00940000154447.y.a.a	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b	ENSGT00940000154447.y.b.a	ENSGT00940000154447.y.a.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j #11	ENSGT00940000156351 #16	ENSGT00940000154761 #19	ENSGT00940000165681	ENSGT00940000163007 #20	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000154909	ENSGT00940000154447.y.a.a	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b	ENSGT00940000154447.y.b.a	ENSGT00940000154447.y.a.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j #11	ENSGT00940000156351 #16	ENSGT00940000154761 #19	ENSGT00940000165681	ENSGT00940000163007 #20	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a.g #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000154909	ENSGT00950000184960	ENSGT00940000154447.y.a.a	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b	ENSGT00940000154447.y.b.a	ENSGT00940000154447.y.a.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j #11	ENSGT00940000156351 #16	ENSGT00940000154761 #19	ENSGT00940000163007 #20	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a.g #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000154909	ENSGT00950000184960	ENSGT00940000154447.y.a.a	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b	ENSGT00940000154447.y.b.a	ENSGT00940000154447.y.a.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j #11	ENSGT00940000156351 #16	ENSGT00940000154761 #19	ENSGT00940000163007 #20	ENSGT00510000047171 #21	ENSGT00940000157038 #22	ENSGT00530000064712 #23	ENSGT00390000017613 #24	ENSGT00390000009488 #25	ENSGT00940000159305 #26	ENSGT00940000162822 #27	ENSGT00950000183185.c.a.a.g #28	ENSGT00390000014909 #29	ENSGT00940000160325.b #30	ENSGT00730000111371 #31	ENSGT00940000160552 #32	ENSGT01030000234578.A.b.a.a.b #33	ENSGT00390000001901 #34	ENSGT00390000007992 #35	ENSGT00940000161711 #36	ENSGT00940000161151 #37
Steppe mouse	MODERN SPECIES	3287				ENSMSIG00000006947 #10	Jkampl (ENSMSIG00000006959) #11	ENSMSIG00000006968 #12	ENSMSIG00000006987 #13	ENSMSIG00000006991 #14	ENSMSIG00000006995 #15	Suclg1 (ENSMSIG00000007008) #16	ENSMSIG00000007054 #17	ENSMSIG00000007062 #18	Dnah6 (ENSMSIG00000007091) #19	Tmsb10b (ENSMSIG00000007285) #20	Kcmf1 (ENSMSIG00000007304) #21	Tcf7l1 (ENSMSIG00000007365) #22	ENSMSIG00000007493 #23	Retsat (ENSMSIG00000007552) #24	Elmod3 (ENSMSIG00000007675) #25	Capg (ENSMSIG00000007704) #26	Sh2d6 (ENSMSIG00000007788) #27	Mat2a (ENSMSIG00000007887) #28	Ggcx (ENSMSIG00000007972) #29	Vamp8 (ENSMSIG00000008076) #30	ENSMSIG00000008096 #31	ENSMSIG00000008118 #32	Tmem150a (ENSMSIG00000008166) #33	0610030E20Rik (ENSMSIG00000008200) #34	Usp39 (ENSMSIG00000008226) #35	Sftpb (ENSMSIG00000008238) #36	Atoh8 (ENSMSIG00000008291) #37
spretus	MODERN SPECIES	15	Lrrtm4 (MGP_SPRETEiJ_G0029531)	Gm20594 (MGP_SPRETEiJ_G0029530)	Reg3g (MGP_SPRETEiJ_G0029529)	Reg1 (MGP_SPRETEiJ_G0029528)	Reg2 (MGP_SPRETEiJ_G0029527)	Reg3a (MGP_SPRETEiJ_G0029526)	Reg3d (MGP_SPRETEiJ_G0029525)	Reg3b (MGP_SPRETEiJ_G0029524)	Lrrtm1 (MGP_SPRETEiJ_G0029523)	Ctnna2 (MGP_SPRETEiJ_G0029522)	Jkampl (MGP_SPRETEiJ_G0029521) #11	Suclg1 (MGP_SPRETEiJ_G0029520) #16	Dnah6 (MGP_SPRETEiJ_G0029519) #19	MGP_SPRETEiJ_G0029518	Kcmf1 (MGP_SPRETEiJ_G0029517) #21	Tcf7l1 (MGP_SPRETEiJ_G0029516) #22	Tgoln1 (MGP_SPRETEiJ_G0029515) #23	Retsat (MGP_SPRETEiJ_G0029514) #24	Elmod3 (MGP_SPRETEiJ_G0029513) #25	Capg (MGP_SPRETEiJ_G0029512) #26	MGP_SPRETEiJ_G0029511 #27	Mat2a (MGP_SPRETEiJ_G0029510) #28	Ggcx (MGP_SPRETEiJ_G0029509) #29	Vamp8 (MGP_SPRETEiJ_G0029508) #30	Vamp5 (MGP_SPRETEiJ_G0029507) #31	Rnf181 (MGP_SPRETEiJ_G0029506)	Tmem150a (MGP_SPRETEiJ_G0029505) #33	0610030E20Rik (MGP_SPRETEiJ_G0029504) #34	Usp39 (MGP_SPRETEiJ_G0029503) #35	Sftpb (MGP_SPRETEiJ_G0029502) #36	Atoh8 (MGP_SPRETEiJ_G0029501) #37
Mouse	MODERN SPECIES	15	Gm20594 (ENSMUSG00000096887)	Reg3g (ENSMUSG00000030017)	Reg1 (ENSMUSG00000059654)	Reg2 (ENSMUSG00000023140)	Reg3a (ENSMUSG00000079516)	Reg3d (ENSMUSG00000068341)	Reg3b (ENSMUSG00000071356)	Lrrtm1 (ENSMUSG00000060780)	Ctnna2 (ENSMUSG00000063063)	Gm9008 (ENSMUSG00000072476)	Jkampl (ENSMUSG00000056197) #11	Suclg1 (ENSMUSG00000052738) #16	Dnah6 (ENSMUSG00000052861) #19	Tmsb10 (ENSMUSG00000079523)	Kcmf1 (ENSMUSG00000055239) #21	Tcf7l1 (ENSMUSG00000055799) #22	Tgoln1 (ENSMUSG00000056429) #23	Retsat (ENSMUSG00000056666) #24	Elmod3 (ENSMUSG00000056698) #25	Capg (ENSMUSG00000056737) #26	Sh2d6 (ENSMUSG00000052631) #27	Mat2a (ENSMUSG00000053907) #28	Ggcx (ENSMUSG00000053460) #29	Vamp8 (ENSMUSG00000050732) #30	Vamp5 (ENSMUSG00000073002) #31	Rnf181 (ENSMUSG00000055850)	Tmem150a (ENSMUSG00000055912) #33	0610030E20Rik (ENSMUSG00000058706) #34	Usp39 (ENSMUSG00000056305) #35	Sftpb (ENSMUSG00000056370) #36	Atoh8 (ENSMUSG00000037621) #37
Ryukyu mouse	MODERN SPECIES	15	Gcfc2 (MGP_CAROLIEiJ_G0028526)	Lrrtm4 (MGP_CAROLIEiJ_G0028525)	Reg3g (MGP_CAROLIEiJ_G0028524)	Reg1 (MGP_CAROLIEiJ_G0028523)	Reg2 (MGP_CAROLIEiJ_G0028522)	Reg3a (MGP_CAROLIEiJ_G0028521)	Reg3d (MGP_CAROLIEiJ_G0028520)	Reg3b (MGP_CAROLIEiJ_G0028519)	Lrrtm1 (MGP_CAROLIEiJ_G0028518)	Ctnna2 (MGP_CAROLIEiJ_G0028517)	Jkampl (MGP_CAROLIEiJ_G0028516) #11	Suclg1 (MGP_CAROLIEiJ_G0028515) #16	Dnah6 (MGP_CAROLIEiJ_G0028514) #19	Tmsb10 (MGP_CAROLIEiJ_G0028513)	Kcmf1 (MGP_CAROLIEiJ_G0028512) #21	Tcf7l1 (MGP_CAROLIEiJ_G0028511) #22	Tgoln1 (MGP_CAROLIEiJ_G0028510) #23	Retsat (MGP_CAROLIEiJ_G0028509) #24	Elmod3 (MGP_CAROLIEiJ_G0028508) #25	Capg (MGP_CAROLIEiJ_G0028507) #26	Sh2d6 (MGP_CAROLIEiJ_G0028506) #27	Mat2a (MGP_CAROLIEiJ_G0028505) #28	Ggcx (MGP_CAROLIEiJ_G0028504) #29	Vamp8 (MGP_CAROLIEiJ_G0028503) #30	Vamp5 (MGP_CAROLIEiJ_G0028502) #31	MGP_CAROLIEiJ_G0028501 #32	Tmem150a (MGP_CAROLIEiJ_G0028500) #33	0610030E20Rik (MGP_CAROLIEiJ_G0028499) #34	Usp39 (MGP_CAROLIEiJ_G0028498) #35	Sftpb (MGP_CAROLIEiJ_G0028497) #36	Atoh8 (MGP_CAROLIEiJ_G0028496) #37
Shrew mouse	MODERN SPECIES	11	Gcfc2 (MGP_PahariEiJ_G0022261)	Lrrtm4 (MGP_PahariEiJ_G0022260)	Reg3g (MGP_PahariEiJ_G0022259)	Reg1 (MGP_PahariEiJ_G0022258)	Reg2 (MGP_PahariEiJ_G0022257)	Reg3a (MGP_PahariEiJ_G0022256)	MGP_PahariEiJ_G0022255	Reg3b (MGP_PahariEiJ_G0022254)	Lrrtm1 (MGP_PahariEiJ_G0022253)	Ctnna2 (MGP_PahariEiJ_G0022252)	Jkampl (MGP_PahariEiJ_G0022251) #11	Suclg1 (MGP_PahariEiJ_G0022250) #16	Dnah6 (MGP_PahariEiJ_G0022249) #19	Tmsb10 (MGP_PahariEiJ_G0022248)	Kcmf1 (MGP_PahariEiJ_G0022247) #21	Tcf7l1 (MGP_PahariEiJ_G0022246) #22	MGP_PahariEiJ_G0022245 #23	Retsat (MGP_PahariEiJ_G0022244) #24	Elmod3 (MGP_PahariEiJ_G0022243) #25	Capg (MGP_PahariEiJ_G0022242) #26	Sh2d6 (MGP_PahariEiJ_G0022241) #27	Mat2a (MGP_PahariEiJ_G0022240) #28	Ggcx (MGP_PahariEiJ_G0022239) #29	Vamp8 (MGP_PahariEiJ_G0022238) #30	Rnf181 (MGP_PahariEiJ_G0022237)	Tmem150a (MGP_PahariEiJ_G0022236) #33	0610030E20Rik (MGP_PahariEiJ_G0022235) #34	Usp39 (MGP_PahariEiJ_G0022234) #35	Sftpb (MGP_PahariEiJ_G0022233) #36	Atoh8 (MGP_PahariEiJ_G0022232) #37	St3gal5 (MGP_PahariEiJ_G0022231)
Rat	MODERN SPECIES	14	Lrrtm4 (ENSRNOG00000021938)	Reg3g (ENSRNOG00000006579)	Reg1a (ENSRNOG00000006486)	Reg3a (ENSRNOG00000006360)	Reg3b (ENSRNOG00000006151)	LRRTM1 (ENSRNOG00000006093)	Ctnna2 (ENSRNOG00000006003)	ENSRNOG00000066158	ENSRNOG00000071146	Ptbp1-ps3 (ENSRNOG00000070516)	Jkampl (ENSRNOG00000024604) #11	Suclg1 (ENSRNOG00000005587) #16	Dnah6 (ENSRNOG00000015581) #19	Tmsb10 (ENSRNOG00000064090)	Kcmf1 (ENSRNOG00000015097) #21	Tcf7l1 (ENSRNOG00000014753) #22	Tgoln2 (ENSRNOG00000014617) #23	Retsat (ENSRNOG00000014090) #24	Elmod3 (ENSRNOG00000038102) #25	Capg (ENSRNOG00000013668) #26	Sh2d6 (ENSRNOG00000013605) #27	Mat2a (ENSRNOG00000013520) #28	Ggcx (ENSRNOG00000012975) #29	Vamp8 (ENSRNOG00000012748) #30	Vamp5 (ENSRNOG00000012659) #31	Rnf181 (ENSRNOG00000012035) #32	Tmem150a (ENSRNOG00000061100) #33	LOC691113 (ENSRNOG00000011713) #34	Usp39 (ENSRNOG00000010930) #35	Sftpb (ENSRNOG00000010761) #36	Atoh8 (ENSRNOG00000010716) #37