Clupeocephala	ANCESTRAL SPECIES	95	ENSGT00950000182835.c.d.c.a #9	ENSGT00940000154089.a.c #10	ENSGT00940000154791 #11	ENSGT00940000174829	ENSGT00940000166464 #12	ENSGT00390000013132.b.a #13	ENSGT00390000003721.d.a.g.a #14	ENSGT00940000156310.p #15	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00390000018596.A.a.a #17	ENSGT01000000215056 #18	ENSGT00940000158931 #19	ENSGT00940000154857.yb.b #20	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000156010.eb	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00940000155864.a.b	ENSGT00390000018439	ENSGT00390000008947	ENSGT00390000016233.e.a #8	ENSGT00950000182835.c.d.c.a #9	ENSGT00940000154089.a.c #10	ENSGT00940000154791 #11	ENSGT00940000166464 #12	ENSGT00940000165427	ENSGT00390000018596.A.a.a #17	ENSGT01000000215056 #18	ENSGT00940000158931 #19	ENSGT00940000154857.yb.b #20	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000155532 #31	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Protacanthopterygii	ANCESTRAL SPECIES	24						ENSGT00390000013132.b.a #13	ENSGT00390000003721.d.a.g.a #14	ENSGT00940000156310.p #15	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00390000018596.A.a.a #17	ENSGT01000000215056 #18	ENSGT00940000158931 #19	ENSGT00940000154857.yb.b #20	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b.c	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000155532 #31	ENSGT00940000154897.q ##32	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.c ##33	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	103							ENSGT00390000003721.d.a.g.a.a #14	ENSGT00940000156310.p.d #15	ENSGT01050000244841.A.b.b.b.a.e #16	ENSGT00390000018596.A.a.a.h #17	ENSGT01000000215056.a #18	ENSGT00940000158931.k #19	ENSGT00940000154857.yb.b #20	ENSGT00940000158489.a.b.a #21	ENSGT00950000183091.B.b.c	ENSGT00940000156490.b.b.c #22	ENSGT00390000005939.a.b.b.d #23	ENSGT00940000165182.d.c #24	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b.g #26	ENSGT00940000177296	ENSGT00940000160902.c.a.b #27	ENSGT00390000018730.A.f.p.a #28	ENSGT00940000155532.vd.a #31	ENSGT00940000154897.r.d #32	ENSGT00950000183021.a.b.d.d #33	ENSGT00940000161109.n.b #34	ENSGT00940000166926.d #35	ENSGT00940000164502.a.b.d #36	ENSGT00940000156477.d.a.j #37	ENSGT00950000182872.f.a.a.a.b.a.b
Salmoninae_a	ANCESTRAL SPECIES	29	ENSGT00390000016233.e.a.a.a #8	ENSGT00950000182835.c.d.c.a.c #9	ENSGT00940000154089.a.c.h #10	ENSGT00940000154791 #11	ENSGT00940000166464.d #12	ENSGT00390000013132.b.a.d #13	ENSGT00390000003721.d.a.g.a.a #14	ENSGT00940000156310.p.d #15	ENSGT01050000244841.A.b.b.b.a.e #16	ENSGT00390000018596.A.a.a.h #17	ENSGT01000000215056.a #18	ENSGT00940000158931.k #19	ENSGT00940000154857.yb.b #20	ENSGT00940000158489.a.b.a #21	ENSGT00950000183091.B.b.c	ENSGT00940000156490.b.b.c #22	ENSGT00390000005939.a.b.b.d #23	ENSGT00940000165182.d.c #24	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b.g #26	ENSGT00940000177296	ENSGT00940000160902.c.a.b #27	ENSGT00390000018730.A.f.p.a #28	ENSGT00940000155532.vd.a.b.a ##31	ENSGT00940000155532.vd.a.b.b #31	ENSGT00940000154897.r.d #32	ENSGT00950000183021.a.b.d.d #33	ENSGT00940000161109.n.b #34	ENSGT00940000166926.d #35	ENSGT00940000164502.a.b.d #36	ENSGT00940000156477.d.a.j #37
Salmo	ANCESTRAL SPECIES	33	ENSGT00390000016233.f #7	ENSGT00390000016233.e.a.a.a #8	ENSGT00950000182835.c.d.c.a.c #9	ENSGT00940000154089.a.c.h #10	ENSGT00940000154791 #11	ENSGT00940000166464.d #12	ENSGT00390000013132.b.a.d #13	ENSGT00390000003721.d.a.g.a.a #14	ENSGT00940000156310.p.d #15	ENSGT01050000244841.A.b.b.b.a.e #16	ENSGT00390000018596.A.a.a.h #17	ENSGT01000000215056.a #18	ENSGT00940000158931.k #19	ENSGT00940000154857.yb.b #20	ENSGT00940000158489.a.b.a #21	ENSGT00940000156490.b.b.c #22	ENSGT00390000005939.a.b.b.d #23	ENSGT00940000165182.d.c #24	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b.g #26	ENSGT00940000160902.c.a.b #27	ENSGT00390000018730.A.f.p.a #28	ENSGT00390000018730.A.f.p.b #29	ENSGT00940000155532.vd.a.a #30	ENSGT00940000155532.vd.a.b.b #31	ENSGT00940000154897.r.d #32	ENSGT00950000183021.a.b.d.d #33	ENSGT00940000161109.n.b #34	ENSGT00940000166926.d #35	ENSGT00940000164502.a.b.d #36	ENSGT00940000156477.d.a.j #37
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000079988	ENSSSAG00000088105	ENSSSAG00000079996 #8	pfkfb4a (ENSSSAG00000080031) #9	mapkapk3 (ENSSSAG00000120343) #10	ENSSSAG00000080363 #11	ENSSSAG00000104861 #12	s61a1 (ENSSSAG00000080810) #14	ENSSSAG00000084614	ENSSSAG00000109190 #15	ENSSSAG00000088324 #16	ENSSSAG00000080884 #17	ENSSSAG00000080939 #19	ENSSSAG00000081039 #20	ENSSSAG00000102513 #21	ENSSSAG00000081051 #22	ENSSSAG00000087159 #23	ENSSSAG00000081057 #25	ENSSSAG00000081100 #26	ENSSSAG00000081295 #27	ENSSSAG00000081297 #28	ENSSSAG00000111766 #29	ENSSSAG00000081301 #30	ENSSSAG00000004266 #32	ENSSSAG00000004953 #33	id1 (ENSSSAG00000004998) #34	sulf2a (ENSSSAG00000005047) #35	arhgap46a (ENSSSAG00000005505) #36	ENSSSAG00000005509 #37	ndrg3a (ENSSSAG00000005546)	ENSSSAG00000005663
River trout	MODERN SPECIES	5	ARPC4 (ENSSTUG00000041653) #7	pfkfb4a (ENSSTUG00000041222) #9	mapkapk3 (ENSSTUG00000040436) #10	DNAH1 (ENSSTUG00000034096) #11	ENSSTUG00000033807 #12	chchd4a (ENSSTUG00000030053) #13	SEC61A1 (ENSSTUG00000029598) #14	ip6k2a (ENSSTUG00000029574) #15	ENSSTUG00000029572	CIDEC (ENSSTUG00000029528) #17	ENSSTUG00000029517 #18	uqcrc1 (ENSSTUG00000025251) #19	ENSSTUG00000025107	TTLL3 (ENSSTUG00000025056) #20	ENSSTUG00000025039 #21	bmp7a (ENSSTUG00000025030) #22	ENSSTUG00000025018 #23	ENSSTUG00000025009 #24	TAF4 (ENSSTUG00000024908) #25	cdh4 (ENSSTUG00000024471) #26	ENSSTUG00000024454	KCNK15 (ENSSTUG00000024440) #27	ENSSTUG00000024412 #28	ENSSTUG00000024400 #29	ENSSTUG00000024377 #30	ENSSTUG00000024392 #31	ZMYND8 (ENSSTUG00000019792) #32	NCOA3 (ENSSTUG00000019605) #33	id1 (ENSSTUG00000019588) #34	sulf2a (ENSSTUG00000018981) #35	arhgap46a (ENSSTUG00000018936) #36
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00390000016233.e.a.a.a #8	ENSGT00950000182835.c.d.c.a.c #9	ENSGT00940000154089.a.c.h #10	ENSGT00940000154791 #11	ENSGT00940000166464.d #12	ENSGT00390000013132.b.a.d #13	ENSGT00390000003721.d.a.g.a.a #14	ENSGT00940000156310.p.d #15	ENSGT01050000244841.A.b.b.b.a.e #16	ENSGT00390000018596.A.a.a.h #17	ENSGT01000000215056.a #18	ENSGT00940000158931.k #19	ENSGT00940000154857.yb.b #20	ENSGT00940000158489.a.b.a #21	ENSGT00950000183091.B.b.c	ENSGT00940000156490.b.b.c #22	ENSGT00390000005939.a.b.b.d #23	ENSGT00940000165182.d.c #24	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b.g #26	ENSGT00940000177296	ENSGT00940000160902.c.a.b #27	ENSGT00390000018730.A.f.p.a #28	ENSGT00940000155532.vd.a.b.a ##31	ENSGT00940000155532.vd.a.b.b #31	ENSGT00940000154897.r.d #32	ENSGT00950000183021.a.b.d.d #33	ENSGT00940000161109.n.b #34	ENSGT00940000166926.d #35	ENSGT00940000164502.a.b.d #36	ENSGT00940000156477.d.a.j #37
Rainbow trout	MODERN SPECIES	8	pfkfb4a (ENSOMYG00000041708) #9	mapkapk3 (ENSOMYG00000042013) #10	ENSOMYG00000043201 #11	ENSOMYG00000043927 #12	chchd4a (ENSOMYG00000043928) #13	ENSOMYG00000043931	ENSOMYG00000043959 #14	ENSOMYG00000044147 #15	ENSOMYG00000044148 #16	ENSOMYG00000044153 #17	ENSOMYG00000044159 #18	ENSOMYG00000044179 #19	ENSOMYG00000044488 #20	RBM38 (ENSOMYG00000044496) #21	RAE1 (ENSOMYG00000044503)	BMP7 (ENSOMYG00000044505) #22	ENSOMYG00000063650	ENSOMYG00000076707	ENSOMYG00000044516 #24	ENSOMYG00000044533 #25	ENSOMYG00000044618 #26	ENSOMYG00000065846	ENSOMYG00000044770 #27	ENSOMYG00000044783 #28	ENSOMYG00000061045 ##31	ENSOMYG00000044786 #31	ENSOMYG00000007315 #32	ENSOMYG00000008594 #33	ID1C (ENSOMYG00000008617) #34	sulf2a (ENSOMYG00000008664) #35	arhgap46a (ENSOMYG00000008693) #36
Oncorhynchus_a	ANCESTRAL SPECIES	3	ENSGT00390000016233.e.a.a.a #8	ENSGT00950000182835.c.d.c.a.c #9	ENSGT00940000154089.a.c.h #10	ENSGT00940000154791 #11	ENSGT00940000166464.d #12	ENSGT00390000013132.b.a.d #13	ENSGT00390000003721.d.a.g.a.a #14	ENSGT00940000156310.p.d #15	ENSGT01050000244841.A.b.b.b.a.e #16	ENSGT00390000018596.A.a.a.h #17	ENSGT01000000215056.a #18	ENSGT00940000158931.k #19	ENSGT00940000154857.yb.b #20	ENSGT00940000158489.a.b.a #21	ENSGT00950000183091.B.b.c	ENSGT00940000156490.b.b.c #22	ENSGT00390000005939.a.b.b.d #23	ENSGT00940000165182.d.c #24	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b.g #26	ENSGT00940000160902.c.a.b #27	ENSGT00390000018730.A.f.p.a #28	ENSGT00940000155532.vd.a.b.a ##31	ENSGT00940000154897.r.d #32	ENSGT00950000183021.a.b.d.d #33	ENSGT00940000161109.n.b #34	ENSGT00940000166926.d #35	ENSGT00940000164502.a.b.d #36	ENSGT00940000156477.d.a.j #37	ENSGT00950000182872.f.a.a.a.b.a.b	ENSGT00940000160331.f.b
Coho salmon	MODERN SPECIES		mapkapk3 (ENSOKIG00005022095) #10	DNAH1 (ENSOKIG00005018007) #11	ENSOKIG00005017804 #12	chchd4a (ENSOKIG00005017799) #13	SEC61A1 (ENSOKIG00005017474) #14	ENSOKIG00005017453	IP6K2 (ENSOKIG00005017446) #15	ENSOKIG00005017443 #16	ENSOKIG00005017439	ENSOKIG00005017419 #17	ENSOKIG00005017414 #18	uqcrc1 (ENSOKIG00005013809) #19	TTLL3 (ENSOKIG00005013519) #20	RBM38 (ENSOKIG00005013496) #21	RAE1 (ENSOKIG00005013425)	BMP7 (ENSOKIG00005013410) #22	ENSOKIG00005013398 #23	ENSOKIG00005013390 #24	TAF4 (ENSOKIG00005013008) #25	CDH4 (ENSOKIG00005012598) #26	KCNK15 (ENSOKIG00005012526) #27	ENSOKIG00005012510 #28	ENSOKIG00005012459 ##31	ZMYND8 (ENSOKIG00005004939) #32	NCOA3 (ENSOKIG00005004526) #33	id1 (ENSOKIG00005004490) #34	sulf2a (ENSOKIG00005004206) #35	arhgap46a (ENSOKIG00005004149) #36	ENSOKIG00005004131 #37	ndrg3a (ENSOKIG00005016490)	ENSOKIG00005016457
Chinook salmon	MODERN SPECIES	11	ARPC4 (ENSOTSG00005015552) #8	pfkfb4a (ENSOTSG00005015576) #9	mapkapk3 (ENSOTSG00005015737) #10	DNAH1 (ENSOTSG00005016325) #11	ENSOTSG00005017252 #12	chchd4a (ENSOTSG00005017254) #13	SEC61A1 (ENSOTSG00005017265) #14	IP6K2 (ENSOTSG00005018228) #15	ENSOTSG00005018230	cidec (ENSOTSG00005018232) #17	ENSOTSG00005018233 #18	uqcrc1 (ENSOTSG00005018265) #19	TTLL3 (ENSOTSG00005024119) #20	RBM38 (ENSOTSG00005024120) #21	rae1 (ENSOTSG00005024121)	bmp7a (ENSOTSG00005024122) #22	ENSOTSG00005024123 #23	ENSOTSG00005024124 #24	ENSOTSG00005024125	TAF4 (ENSOTSG00005024127) #25	cdh4 (ENSOTSG00005024227) #26	ENSOTSG00005029555 #27	ENSOTSG00005029557 #28	ZMYND8 (ENSOTSG00005029575) #32	NCOA3 (ENSOTSG00005042192) #33	id1 (ENSOTSG00005042195) #34	sulf2a (ENSOTSG00005042198) #35	arhgap46a (ENSOTSG00005042201) #36	ENSOTSG00005042203 #37	ndrg3a (ENSOTSG00005042210)	ENSOTSG00005042216
Huchen	MODERN SPECIES	625							SEC61A1 (ENSHHUG00000043092) #14	ip6k2a (ENSHHUG00000043206) #15	ENSHHUG00000043209 #16	ENSHHUG00000043210	ENSHHUG00000043212 #17	ENSHHUG00000043213 #18	uqcrc1 (ENSHHUG00000043221) #19	TTLL3 (ENSHHUG00000043288) #20	ENSHHUG00000043300 #21	bmp7a (ENSHHUG00000043309) #22	ENSHHUG00000043332 #24	LSM14B (ENSHHUG00000043335)	TAF4 (ENSHHUG00000043348) #25	ENSHHUG00000043443	cdh4 (ENSHHUG00000043456) #26
Salmoninae	ANCESTRAL SPECIES	8	ENSGT00390000018439	ENSGT00390000008947.a	ENSGT00390000016233.e.a.a.b ##8	ENSGT00950000182835.c.d.c.a.d ##9	ENSGT00940000154089.a.c.g ##10	ENSGT00940000166464.c ##12	ENSGT00390000013132.b.a.c ##13	ENSGT00390000003721.d.a.g.a.b ##14	ENSGT00940000156310.p.c ##15	ENSGT01050000244841.A.b.b.b.a.f ##16	ENSGT00390000018596.A.a.a.g ##17	ENSGT01000000215056.b ##18	ENSGT00940000158931.l ##19	ENSGT00940000158489.a.a.d ##21	ENSGT00940000158489.a.b.b ##21	ENSGT00940000156490.b.b.d ##22	ENSGT00390000005939.a.b.b.c ##23	ENSGT00940000165182.d.d ##24	ENSGT00940000156010.eb	ENSGT00940000158073.b.h ##26	ENSGT00940000160902.c.a.a ##27	ENSGT00940000155532.vd.b ##31	ENSGT00390000018730.A.f.o ##29	ENSGT00940000154897.r.c ##32	ENSGT00950000183021.a.b.d.c ##33	ENSGT00940000161109.n.a ##34	ENSGT00940000166926.c ##35	ENSGT00940000164502.a.b.c ##36	ENSGT00940000156477.d.a.i ##37	ENSGT00950000182872.f.a.a.a.b.b	ENSGT00950000182872.f.a.a.a.b.a.a
Salmoninae_a	ANCESTRAL SPECIES	25	ENSGT00940000155864.a.b.c	ENSGT00390000018439	ENSGT00390000008947.a	ENSGT00390000016233.e.a.a.b ##8	ENSGT00950000182835.c.d.c.a.d ##9	ENSGT00940000154089.a.c.g ##10	ENSGT00940000166464.c ##12	ENSGT00390000013132.b.a.c ##13	ENSGT00390000003721.d.a.g.a.b ##14	ENSGT00940000156310.p.c ##15	ENSGT01050000244841.A.b.b.b.a.f ##16	ENSGT00390000018596.A.a.a.g ##17	ENSGT01000000215056.b ##18	ENSGT00940000158931.l ##19	ENSGT00940000158489.a.a.d ##21	ENSGT00940000156490.b.b.d ##22	ENSGT00390000005939.a.b.b.c ##23	ENSGT00940000165182.d.d ##24	ENSGT00940000156010.eb	ENSGT00940000158073.b.h ##26	ENSGT00940000160902.c.a.a ##27	ENSGT00940000155532.vd.b ##31	ENSGT00390000018730.A.f.o ##29	ENSGT00940000154897.r.c ##32	ENSGT00950000183021.a.b.d.c ##33	ENSGT00940000161109.n.a ##34	ENSGT00940000166926.c ##35	ENSGT00940000164502.a.b.c ##36	ENSGT00940000156477.d.a.i ##37	ENSGT00950000182872.f.a.a.a.b.b.b	ENSGT00950000182872.f.a.a.a.b.a.a
Salmo	ANCESTRAL SPECIES	6	ENSGT00940000155864.a.b.c	ENSGT00390000018439	ENSGT00390000008947.a	ENSGT00390000016233.e.a.a.b ##8	ENSGT00950000182835.c.d.c.a.d ##9	ENSGT00940000154089.a.c.g ##10	ENSGT00940000166464.c ##12	ENSGT00390000013132.b.a.c ##13	ENSGT00390000003721.d.a.g.a.b ##14	ENSGT00940000156310.p.c ##15	ENSGT01050000244841.A.b.b.b.a.f ##16	ENSGT00390000018596.A.a.a.g ##17	ENSGT01000000215056.b ##18	ENSGT00940000158931.l ##19	ENSGT00940000158489.a.a.d ##21	ENSGT00940000156490.b.b.d ##22	ENSGT00390000005939.a.b.b.c ##23	ENSGT00940000165182.d.d ##24	ENSGT00940000156010.eb	ENSGT00940000158073.b.h ##26	ENSGT00940000160902.c.a.a ##27	ENSGT00940000155532.vd.b ##31	ENSGT00390000018730.A.f.o ##29	ENSGT00940000154897.r.c ##32	ENSGT00950000183021.a.b.d.c ##33	ENSGT00940000161109.n.a ##34	ENSGT00940000166926.c ##35	ENSGT00940000164502.a.b.c ##36	ENSGT00940000156477.d.a.i ##37	ENSGT00950000182872.f.a.a.a.b.b.a	ENSGT00940000160331.f.a
Atlantic salmon	MODERN SPECIES	14	ENSSSAG00000081705	RAB7A (ENSSSAG00000099562)	ENSSSAG00000118439 ##8	ENSSSAG00000110425	pfkfb4a (ENSSSAG00000081699) ##9	mapk3 (ENSSSAG00000081696) ##10	ENSSSAG00000080785 ##12	chchd4a (ENSSSAG00000081694) ##13	sc61a (ENSSSAG00000081688) ##14	ENSSSAG00000100847 ##15	ENSSSAG00000082385 ##16	ENSSSAG00000099152 ##17	ENSSSAG00000107276 ##18	ENSSSAG00000081674 ##19	RB24B (ENSSSAG00000081663) ##21	ENSSSAG00000087600 ##22	ENSSSAG00000081662 ##23	ENSSSAG00000090007 ##24	ENSSSAG00000102060	ENSSSAG00000081659	ENSSSAG00000117339	ENSSSAG00000082398 ##26	kcnkf (ENSSSAG00000081629) ##27	ENSSSAG00000081628 ##31	ENSSSAG00000081626 ##31	ENSSSAG00000119808 ##29	ENSSSAG00000104244	ENSSSAG00000085212	ENSSSAG00000081599 ##32	ENSSSAG00000097889	ENSSSAG00000081594 ##33
River trout	MODERN SPECIES	7	rab7a (ENSSTUG00000021167)	hmces (ENSSTUG00000021232)	tada3l (ENSSTUG00000021243)	ENSSTUG00000021264 ##8	pfkfb4a (ENSSTUG00000021285) ##9	mapkapk3 (ENSSTUG00000021443) ##10	ENSSTUG00000021686 ##12	chchd4a (ENSSTUG00000021699) ##13	SEC61A1 (ENSSTUG00000021731) ##14	ip6k2a (ENSSTUG00000022009) ##15	ENSSTUG00000022017 ##16	cidec (ENSSTUG00000022023) ##17	ENSSTUG00000022034 ##18	uqcrc1 (ENSSTUG00000022113) ##19	rbm38 (ENSSTUG00000025804) ##21	bmp7a (ENSSTUG00000025812) ##22	ENSSTUG00000025822 ##23	ENSSTUG00000025825 ##24	LSM14B (ENSSTUG00000025832)	cdh4 (ENSSTUG00000025893) ##26	ENSSTUG00000026295 ##27	ENSSTUG00000026300 ##31	ENSSTUG00000026312 ##29	ZMYND8 (ENSSTUG00000026395) ##32	NCOA3 (ENSSTUG00000029255) ##33	id1 (ENSSTUG00000029349) ##34	sulf2a (ENSSTUG00000029377) ##35	arhgap46a (ENSSTUG00000030105) ##36	ENSSTUG00000030219 ##37	ndrg3a (ENSSTUG00000030326)	ENSSTUG00000033367
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00390000018439	ENSGT00390000008947.a	ENSGT00390000016233.e.a.a.b ##8	ENSGT00950000182835.c.d.c.a.d ##9	ENSGT00940000154089.a.c.g ##10	ENSGT00940000166464.c ##12	ENSGT00390000013132.b.a.c ##13	ENSGT00390000003721.d.a.g.a.b ##14	ENSGT00940000156310.p.c ##15	ENSGT01050000244841.A.b.b.b.a.f ##16	ENSGT00390000018596.A.a.a.g ##17	ENSGT01000000215056.b ##18	ENSGT00940000158931.l ##19	ENSGT00940000156245.b	ENSGT00940000158489.a.b.b ##21	ENSGT00940000156490.b.b.d ##22	ENSGT00390000005939.a.b.b.c ##23	ENSGT00940000165182.d.d ##24	ENSGT00940000156010.eb	ENSGT00940000158073.b.h ##26	ENSGT00940000160902.c.a.a ##27	ENSGT00940000155532.vd.b ##31	ENSGT00390000018730.A.f.o ##29	ENSGT00940000154897.r.c ##32	ENSGT00950000183021.a.b.d.c ##33	ENSGT00940000161109.n.a ##34	ENSGT00940000166926.c ##35	ENSGT00940000164502.a.b.c ##36	ENSGT00940000156477.d.a.i ##37	ENSGT00950000182872.f.a.a.a.b.b.b	ENSGT00950000182872.f.a.a.a.b.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	4	ENSGT00390000018439	ENSGT00390000008947.a	ENSGT00390000016233.e.a.a.b ##8	ENSGT00950000182835.c.d.c.a.d ##9	ENSGT00940000154089.a.c.g ##10	ENSGT00940000166464.c ##12	ENSGT00390000013132.b.a.c ##13	ENSGT00390000003721.d.a.g.a.b ##14	ENSGT00940000156310.p.c ##15	ENSGT01050000244841.A.b.b.b.a.f ##16	ENSGT00390000018596.A.a.a.g ##17	ENSGT01000000215056.b ##18	ENSGT00940000158931.l ##19	ENSGT00940000156245.b	ENSGT00940000158489.a.b.b ##21	ENSGT00940000156490.b.b.d ##22	ENSGT00940000165182.d.d ##24	ENSGT00940000156010.eb	ENSGT00940000158073.b.h ##26	ENSGT00940000160902.c.a.a ##27	ENSGT00940000155532.vd.b ##31	ENSGT00390000018730.A.f.o ##29	ENSGT00940000154897.r.c ##32	ENSGT00950000183021.a.b.d.c ##33	ENSGT00940000161109.n.a ##34	ENSGT00940000166926.c ##35	ENSGT00940000164502.a.b.c ##36	ENSGT00940000156477.d.a.i ##37	ENSGT00950000182872.f.a.a.a.b.a.a	ENSGT00940000160331.f.a	ENSGT00390000018330.f.a
Coho salmon	MODERN SPECIES	25	rab7a (ENSOKIG00005017511)	hmces (ENSOKIG00005017466)	tada3l (ENSOKIG00005017451)	ARPC4 (ENSOKIG00005017430) ##8	pfkfb4a (ENSOKIG00005013806) ##9	mapkapk3 (ENSOKIG00005013363) ##10	ENSOKIG00005013310 ##12	chchd4a (ENSOKIG00005013290) ##13	SEC61A1 (ENSOKIG00005013260) ##14	ip6k2a (ENSOKIG00005013253) ##15	ENSOKIG00005013250 ##16	CIDEC (ENSOKIG00005013232) ##17	ENSOKIG00005013229 ##18	UQCRC1 (ENSOKIG00005010720) ##19	ENSOKIG00005010594	bmp7a (ENSOKIG00005010587) ##22	ENSOKIG00005010577 ##24	LSM14B (ENSOKIG00005010567)	cdh4 (ENSOKIG00005010458) ##26	ENSOKIG00005010440 ##27	ENSOKIG00005010434 ##31	ENSOKIG00005010428 ##31	ENSOKIG00005010416 ##29	ENSOKIG00005010383 ##29	ZMYND8 (ENSOKIG00005003668) ##32	NCOA3 (ENSOKIG00005003246) ##33	id1 (ENSOKIG00005003231) ##34	sulf2a (ENSOKIG00005002779) ##35	arhgap46a (ENSOKIG00005002629) ##36	PHF20 (ENSOKIG00005002586) ##37	ndrg3a (ENSOKIG00005002068)
Chinook salmon	MODERN SPECIES	31	rab7a (ENSOTSG00005037442)	hmces (ENSOTSG00005037439)	tada3l (ENSOTSG00005037438)	arpc4 (ENSOTSG00005037436) ##8	pfkfb4a (ENSOTSG00005036869) ##9	mapkapk3 (ENSOTSG00005036732) ##10	ENSOTSG00005036728 ##12	chchd4a (ENSOTSG00005036726) ##13	SEC61A1 (ENSOTSG00005036411) ##14	ip6k2a (ENSOTSG00005036408) ##15	ENSOTSG00005036407 ##16	cidec (ENSOTSG00005036406) ##17	ENSOTSG00005036405 ##18	uqcrc1 (ENSOTSG00005033318) ##19	ENSOTSG00005033312 ##21	bmp7a (ENSOTSG00005033311) ##22	ENSOTSG00005033310 ##24	LSM14B (ENSOTSG00005033309)	cdh4 (ENSOTSG00005028711) ##26	ENSOTSG00005028681	ENSOTSG00005028680 ##27	ENSOTSG00005028679 ##31	ENSOTSG00005028678	ENSOTSG00005028677 ##31	ENSOTSG00005028676 ##29	ENSOTSG00005028675 ##29	ENSOTSG00005028674	ZMYND8 (ENSOTSG00005028671) ##32	NCOA3 (ENSOTSG00005028663) ##33	id1 (ENSOTSG00005028655) ##34	sulf2a (ENSOTSG00005027908) ##35
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000038609 ##8	pfkfb4a (ENSOMYG00000038536) ##9	mapkapk3 (ENSOMYG00000038077) ##10	ENSOMYG00000001326	ENSOMYG00000037954 ##12	chchd4a (ENSOMYG00000037930) ##13	ENSOMYG00000037878 ##14	ENSOMYG00000064310 ##15	ENSOMYG00000058852	ENSOMYG00000037762 ##16	ENSOMYG00000037756 ##17	ENSOMYG00000037745 ##18	ENSOMYG00000034487 ##19	ENSOMYG00000034240	ENSOMYG00000059975	ENSOMYG00000034234 ##22	ENSOMYG00000034231 ##23	ENSOMYG00000034228 ##24	ENSOMYG00000034218	ENSOMYG00000033922 ##26	ENSOMYG00000033877 ##27	ENSOMYG00000065601 ##31	ENSOMYG00000033865 ##29	ENSOMYG00000048478	ENSOMYG00000035314 ##29	ENSOMYG00000030454 ##32	ENSOMYG00000029427	ENSOMYG00000029414 ##33	id1 (ENSOMYG00000029365) ##34	ENSOMYG00000073469	sulf2a (ENSOMYG00000029277) ##35
Huchen	MODERN SPECIES	335										ENSHHUG00000036913	cidec (ENSHHUG00000036902) ##17	uqcrc1 (ENSHHUG00000036883) ##19	ENSHHUG00000036880	ENSHHUG00000036868 ##21	ENSHHUG00000036864	bmp7a (ENSHHUG00000036856) ##22	ENSHHUG00000036854 ##23	ENSHHUG00000036853 ##24	LSM14B (ENSHHUG00000036841)	cdh4 (ENSHHUG00000035538) ##26	ENSHHUG00000035509 ##27	ENSHHUG00000035501 ##31	ENSHHUG00000035495 ##29	ENSHHUG00000035488 ##29	ZMYND8 (ENSHHUG00000034217) ##32	NCOA3 (ENSHHUG00000034193) ##33	id1 (ENSHHUG00000034172) ##34
Northern pike	MODERN SPECIES	16	arpc4 (ENSELUG00000006470) #8	pfkfb4a (ENSELUG00000006392) #9	mapkapk3 (ENSELUG00000006341) #10	DNAH1 (ENSELUG00000006295) #11	ENSELUG00000006181 #12	chchd4a (ENSELUG00000006166) #13	SEC61A1 (ENSELUG00000006142) #14	ip6k2a (ENSELUG00000006086) #15	ENSELUG00000025158	ENSELUG00000006029 #16	cidec (ENSELUG00000006000) #17	ENSELUG00000005948 #18	uqcrc1 (ENSELUG00000005895) #19	RBM38 (ENSELUG00000005849) #21	rae1 (ENSELUG00000005833)	bmp7a (ENSELUG00000005817) #22	ENSELUG00000005806 #23	ENSELUG00000005799 #24	LSM14B (ENSELUG00000005780)	TAF4 (ENSELUG00000005741) #25	cdh4 (ENSELUG00000005693) #26	KCNK15 (ENSELUG00000000159) #27	ENSELUG00000031326 #29	ENSELUG00000005607 #31	ENSELUG00000033279 #31	ZMYND8 (ENSELUG00000005483) #32	ENSELUG00000005397 #33	id1 (ENSELUG00000005365) #34	sulf2a (ENSELUG00000005287) #35	arhgap46a (ENSELUG00000005147) #36	ENSELUG00000005071 #37
Acanthomorphata	ANCESTRAL SPECIES	42														ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Cod	MODERN SPECIES	4	ENSGMOG00000024791	mustn1b (ENSGMOG00000019317)	stimate (ENSGMOG00000019310)	SFMBT1 (ENSGMOG00000019301)	ENSGMOG00000019294	ENSGMOG00000036049	ENSGMOG00000019276	ENSGMOG00000019270	ENSGMOG00000010010	ENSGMOG00000027022	ENSGMOG00000034646	ENSGMOG00000009988	ENSGMOG00000029494	RBM38 (ENSGMOG00000029207) ##21	RAE1 (ENSGMOG00000016670)	bmp7a (ENSGMOG00000016691) #22	ENSGMOG00000036693 #23	ENSGMOG00000032653 #24	ENSGMOG00000016727	LSM14B (ENSGMOG00000017115)	ENSGMOG00000017138 #25	CDH4 (ENSGMOG00000017191) #26	ENSGMOG00000025076 #27	ogfr2 (ENSGMOG00000017268) #29	ENSGMOG00000022276 #31	ENSGMOG00000027426 #31	ENSGMOG00000022915 #31	ENSGMOG00000017376 #32	ENSGMOG00000017433 #33	id1 (ENSGMOG00000037179) #34	sulf2a (ENSGMOG00000017504) #35
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000156245.b	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Pinecone sodierfish	MODERN SPECIES	19	cidec (ENSMMDG00005018519) #17	ENSMMDG00005018522 #16	ip6k2a (ENSMMDG00005018525) #15	SEC61A1 (ENSMMDG00005018529) #14	chchd4a (ENSMMDG00005018566) #13	ENSMMDG00005018568 #12	ENSMMDG00005018572 #11	ENSMMDG00005018574 #11	ENSMMDG00005018582 #11	mapkapk3 (ENSMMDG00005018617) #10	pfkfb4a (ENSMMDG00005018831) #9	ARPC4 (ENSMMDG00005018913) #8	tada3l (ENSMMDG00005018915)	ENSMMDG00005018918	rae1 (ENSMMDG00005018920)	bmp7a (ENSMMDG00005018945) #22	ENSMMDG00005019667 #24	ENSMMDG00005019670	LSM14B (ENSMMDG00005019672)	ENSMMDG00005019674 #25	cdh4 (ENSMMDG00005019715) #26	ENSMMDG00005020180	ENSMMDG00005020181 #27	ogfr2 (ENSMMDG00005020184) #29	ENSMMDG00005020192 #31	ZMYND8 (ENSMMDG00005020267) #32	NCOA3 (ENSMMDG00005021679) #33	id1 (ENSMMDG00005021683) #34	sulf2a (ENSMMDG00005021725) #35	arhgap46a (ENSMMDG00005004002) #36	PHF20 (ENSMMDG00005004009) #37
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Tiger tail seahorse	MODERN SPECIES	510										ENSHCOG00000005676	ZMYND8 (ENSHCOG00000005670) #32	ARPC4 (ENSHCOG00000005642) #8	tada3l (ENSHCOG00000005625)	RBM38 (ENSHCOG00000005622) #21	rae1 (ENSHCOG00000005616)	BMP7 (ENSHCOG00000005555) #22	ENSHCOG00000004876 #24	LSM14B (ENSHCOG00000004867)	ENSHCOG00000004862	ENSHCOG00000004847 #25	cdh4 (ENSHCOG00000004825) #26	ENSHCOG00000004773 #31	slc25a26 (ENSHCOG00000004718)	ENSHCOG00000004706	LRIG1 (ENSHCOG00000004691)	kbtbd8 (ENSHCOG00000004650)	ENSHCOG00000004623	suclg2 (ENSHCOG00000004615)	ENSHCOG00000004607	tafa4b (ENSHCOG00000004598)	EOGT (ENSHCOG00000004579)
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b
Pomacentridae	ANCESTRAL SPECIES	33	ENSGT00940000166196	ENSGT00940000166313.a	ENSGT01090000260003.a.b.b.a.a.b.b.a.l	ENSGT00530000063631.b.n.a	ENSGT00940000164411	ENSGT00940000160486.d	ENSGT00940000158405	ENSGT00950000182893.a.a.b.b	ENSGT00940000155006.e.a	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b
Pomacentridae_A	ANCESTRAL SPECIES	2	ENSGT00940000166196	ENSGT00940000166313.a	ENSGT01090000260003.a.b.b.a.a.b.b.a.l	ENSGT00530000063631.b.n.a	ENSGT00940000164411	ENSGT00940000160486.d	ENSGT00940000158405	ENSGT00950000182893.a.a.b.b	ENSGT00940000155006.e.a	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b
Amphiprion	ANCESTRAL SPECIES	38	ENSGT00940000166196	ENSGT00940000166313.a	ENSGT01090000260003.a.b.b.a.a.b.b.a.l	ENSGT00530000063631.b.n.a	ENSGT00940000164411	ENSGT00940000160486.d	ENSGT00940000158405	ENSGT00950000182893.a.a.b.b	ENSGT00940000155006.e.a	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331
Orange clownfish	MODERN SPECIES	20	si:dkey-13a21.4 (ENSAPEG00000023338)	gata1a (ENSAPEG00000023372)	BCL2L1 (ENSAPEG00000023385)	adnpa (ENSAPEG00000023391)	ENSAPEG00000023397	MAFB (ENSAPEG00000023407)	fam83d (ENSAPEG00000023418)	ENSAPEG00000023431	top1a (ENSAPEG00000023452)	MAPKAPK3 (ENSAPEG00000023504) #10	pfkfb4a (ENSAPEG00000023519) #9	arpc4 (ENSAPEG00000023544) #8	tada3l (ENSAPEG00000023555)	RBM38 (ENSAPEG00000023581) #21	rae1 (ENSAPEG00000023589)	bmp7a (ENSAPEG00000023610) #22	ENSAPEG00000023619 #24	ENSAPEG00000023624	LSM14B (ENSAPEG00000023633)	ENSAPEG00000023671 #25	cdh4 (ENSAPEG00000023708) #26	ENSAPEG00000023796 #27	ogfr2 (ENSAPEG00000023804) #29	ENSAPEG00000023815 #31	ZMYND8 (ENSAPEG00000023865) #32	NCOA3 (ENSAPEG00000024040) #33	id1 (ENSAPEG00000024079) #34	sulf2a (ENSAPEG00000024100) #35	arhgap46a (ENSAPEG00000024124) #36	PHF20 (ENSAPEG00000024148) #37	ndrg3a (ENSAPEG00000024175)
Clown anemonefish	MODERN SPECIES	1068														RBM38 (ENSAOCG00000012559) #21	rae1 (ENSAOCG00000012519)	bmp7a (ENSAOCG00000012469) #22	ENSAOCG00000012441	ENSAOCG00000012394 #24	LSM14B (ENSAOCG00000012380)	ENSAOCG00000012362 #25
Spiny chromis	MODERN SPECIES	2429																bmp7a (ENSAPOG00000001722) #22	ENSAPOG00000001734 #24	ENSAPOG00000001769	ENSAPOG00000001780	ENSAPOG00000001831 #25
Bicolor damselfish	MODERN SPECIES	1122	si:dkey-13a21.4 (ENSSPAG00000021279)	gata1a (ENSSPAG00000021259)	BCL2L1 (ENSSPAG00000021255)	adnpa (ENSSPAG00000021247)	ENSSPAG00000021221	MAFB (ENSSPAG00000021215)	fam83d (ENSSPAG00000021210)	ENSSPAG00000021203	top1a (ENSSPAG00000021140)	ENSSPAG00000021102 #10	PFKFB4 (ENSSPAG00000021065) #9	ARPC4 (ENSSPAG00000021038) #8	tada3l (ENSSPAG00000021006)	RBM38 (ENSSPAG00000020989) #21	rae1 (ENSSPAG00000020972)	bmp7a (ENSSPAG00000020958) #22	ENSSPAG00000020949 #24	ENSSPAG00000020915	ENSSPAG00000020887 #25
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532 #31	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35
Nile tilapia	MODERN SPECIES	17	ENSONIG00000040901 #20	uqcrc1 (ENSONIG00000020334) #19	ENSONIG00000041368	cidec (ENSONIG00000020333) #17	ENSONIG00000035329 #16	ip6k2a (ENSONIG00000037204) #15	SEC61A1 (ENSONIG00000020330) #14	chchd4a (ENSONIG00000028449) #13	ENSONIG00000020329 #12	mapkapk3 (ENSONIG00000029677) #10	pfkfb4a (ENSONIG00000020327) #9	arpc4 (ENSONIG00000039568) #8	tada3l (ENSONIG00000020325)	RBM38 (ENSONIG00000020324) #21	rae1 (ENSONIG00000020323)	bmp7a (ENSONIG00000031028) #22	ENSONIG00000020321 #24	ENSONIG00000020319	LSM14B (ENSONIG00000020318)	ENSONIG00000020317 #25	cdh4 (ENSONIG00000020316) #26	ENSONIG00000032490	ENSONIG00000029288 #29	ENSONIG00000038101 #29	ENSONIG00000020315 #31	ZMYND8 (ENSONIG00000020314) #32	NCOA3 (ENSONIG00000020313) #33	id1 (ENSONIG00000040265) #34	sulf2a (ENSONIG00000020311) #35	arhgap46a (ENSONIG00000020310) #36	PHF20 (ENSONIG00000020309) #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000155532 #31	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791.sb.a #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f.l #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b.f
Burton s mouthbrooder	MODERN SPECIES	279	ENSHBUG00000011293 #16	ip6k2a (ENSHBUG00000011320) #15	SEC61A1 (ENSHBUG00000011384) #14	chchd4a (ENSHBUG00000011403) #13	ENSHBUG00000011506 #12	ENSHBUG00000011529	ENSHBUG00000011544 #11	ENSHBUG00000011568 #11	ENSHBUG00000011611 #11	mapkapk3 (ENSHBUG00000011621) #10	pfkfb4a (ENSHBUG00000011691) #9	arpc4 (ENSHBUG00000011724) #8	tada3l (ENSHBUG00000011757)	RBM38 (ENSHBUG00000011778) #21	rae1 (ENSHBUG00000011788)	bmp7a (ENSHBUG00000011813) #22	ENSHBUG00000011818 #24	ENSHBUG00000011850	ENSHBUG00000011864	ENSHBUG00000011873 #25	cdh4 (ENSHBUG00000011974) #26	ENSHBUG00000011989 #27	ogfr2 (ENSHBUG00000012008) #29	ENSHBUG00000012037 #31	ENSHBUG00000012047 #31	ZMYND8 (ENSHBUG00000012749) #32	NCOA3 (ENSHBUG00000012914) #33	id1 (ENSHBUG00000012928) #34	sulf2a (ENSHBUG00000013122) #35	arhgap46a (ENSHBUG00000013204) #36	PHF20 (ENSHBUG00000013233) #37
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791.sb.a #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f.l #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b.f
Haplochromini_B	ANCESTRAL SPECIES		ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791.sb.a #11	ENSGT00940000154791.rb #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f.k.b #29	ENSGT00390000018730.A.f.k.a #29	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532 #31	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34
Zebra mbuna	MODERN SPECIES	93									ENSMZEG00005000673 #11	mapkapk3 (ENSMZEG00005000733) #10	pfkfb4a (ENSMZEG00005000751) #9	ARPC4 (ENSMZEG00005000783) #8	tada3l (ENSMZEG00005000816)	RBM38 (ENSMZEG00005000849) #21	rae1 (ENSMZEG00005000880)	bmp7a (ENSMZEG00005000945) #22	ENSMZEG00005000975 #24	LSM14B (ENSMZEG00005000987)	ENSMZEG00005000993 #25	cdh4 (ENSMZEG00005001019) #26
Eastern happy	MODERN SPECIES	17	ENSACLG00000018997 #16	ip6k2a (ENSACLG00000019005) #15	SEC61A1 (ENSACLG00000019038) #14	chchd4a (ENSACLG00000019113) #13	ENSACLG00000019099 #12	ENSACLG00000019127	ENSACLG00000019141 #11	ENSACLG00000019156 #11	ENSACLG00000019168 #11	mapkapk3 (ENSACLG00000019207) #10	pfkfb4a (ENSACLG00000019236) #9	ARPC4 (ENSACLG00000019398) #8	tada3l (ENSACLG00000019436)	RBM38 (ENSACLG00000019514) #21	rae1 (ENSACLG00000019520)	bmp7a (ENSACLG00000019566) #22	ENSACLG00000019616 #24	LSM14B (ENSACLG00000019624)	ENSACLG00000019631	LSM14B (ENSACLG00000019663)	ENSACLG00000019690 #25	cdh4 (ENSACLG00000019714) #26	ENSACLG00000019811	ENSACLG00000019821	ENSACLG00000019829	ENSACLG00000019836 #27	ENSACLG00000019845 #29	ENSACLG00000019857 #29	ENSACLG00000019879 #31	ENSACLG00000019909 #31	ZMYND8 (ENSACLG00000019966) #32
P. nyererei	MODERN SPECIES	473	cidec (ENSPNYG00000020308) #17	ENSPNYG00000020266 #16	ip6k2a (ENSPNYG00000020226) #15	SEC61A1 (ENSPNYG00000020183) #14	chchd4a (ENSPNYG00000020167) #13	ENSPNYG00000020093 #12	ENSPNYG00000020061 #11	ENSPNYG00000020041 #11	ENSPNYG00000020012 #11	mapkapk3 (ENSPNYG00000019975) #10	pfkfb4a (ENSPNYG00000019923) #9	arpc4 (ENSPNYG00000019887) #8	tada3l (ENSPNYG00000019850)	RBM38 (ENSPNYG00000019727) #21	rae1 (ENSPNYG00000019671)	bmp7a (ENSPNYG00000019640) #22	ENSPNYG00000019630 #24	ENSPNYG00000019619	ENSPNYG00000019601	ENSPNYG00000019582 #25	cdh4 (ENSPNYG00000019555) #26	ENSPNYG00000019535	ENSPNYG00000019519 #27	ENSPNYG00000019502 #29	ENSPNYG00000019471 #29	ENSPNYG00000019467 #31	ENSPNYG00000019459 #31	ZMYND8 (ENSPNYG00000019367) #32	NCOA3 (ENSPNYG00000019315) #33	id1 (ENSPNYG00000019305) #34	sulf2a (ENSPNYG00000019254) #35
Lyretail cichlid	MODERN SPECIES	296	uqcrc1 (ENSNBRG00000022052) #19	ENSNBRG00000022085	cidec (ENSNBRG00000022098) #17	ENSNBRG00000022183 #16	ip6k2a (ENSNBRG00000022225) #15	SEC61A1 (ENSNBRG00000022251) #14	chchd4a (ENSNBRG00000022279) #13	ENSNBRG00000022298 #12	DNAH1 (ENSNBRG00000022360) #11	mapkapk3 (ENSNBRG00000022459) #10	pfkfb4a (ENSNBRG00000022474) #9	arpc4 (ENSNBRG00000022499) #8	tada3l (ENSNBRG00000022521)	RBM38 (ENSNBRG00000022545) #21	rae1 (ENSNBRG00000022557)	bmp7a (ENSNBRG00000022577) #22	ENSNBRG00000022586 #24	ENSNBRG00000022596	ENSNBRG00000022606	ENSNBRG00000022625 #25	cdh4 (ENSNBRG00000022687) #26	ENSNBRG00000022708	ENSNBRG00000022733 #27	ogfr2 (ENSNBRG00000022773) #29	ENSNBRG00000022778 #31	ENSNBRG00000022786 #31	ZMYND8 (ENSNBRG00000022800) #32	NCOA3 (ENSNBRG00000022831) #33	id1 (ENSNBRG00000022856) #34	sulf2a (ENSNBRG00000022867) #35	arhgap46a (ENSNBRG00000022903) #36
Midas cichlid	MODERN SPECIES	1043	uqcrc1 (ENSACIG00000013408) #19	ENSACIG00000013399	cidec (ENSACIG00000013378) #17	ENSACIG00000013315 #16	ENSACIG00000013284	SEC61A1 (ENSACIG00000013257) #14	chchd4a (ENSACIG00000013246) #13	ENSACIG00000013194 #12	DNAH1 (ENSACIG00000013027) #11	mapkapk3 (ENSACIG00000012743) #10	pfkfb4a (ENSACIG00000012682) #9	ARPC4 (ENSACIG00000012667) #8	tada3l (ENSACIG00000012641)	RBM38 (ENSACIG00000012502) #21	rae1 (ENSACIG00000012474)	bmp7a (ENSACIG00000012446) #22	ENSACIG00000012413 #24	ENSACIG00000012389 #24	ENSACIG00000012314	LSM14B (ENSACIG00000012266)	TAF4 (ENSACIG00000012238) #25	cdh4 (ENSACIG00000012125) #26	ENSACIG00000012101 #27	ogfr2 (ENSACIG00000012087) #29	ENSACIG00000012081 #31	ENSACIG00000012057 #31	ZMYND8 (ENSACIG00000012003) #32	NCOA3 (ENSACIG00000011947) #33	id1 (ENSACIG00000011866) #34	sulf2a (ENSACIG00000011829) #35	arhgap46a (ENSACIG00000011796) #36
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331
Oryzias	ANCESTRAL SPECIES	1	ENSGT00550000074997	ENSGT00390000007458	ENSGT01100000263545.a.b.d.b	ENSGT00940000157312	ENSGT00940000163561	ENSGT00620000088018	ENSGT00390000014109	ENSGT00530000065109	ENSGT00510000048121	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00390000007458	ENSGT01100000263545.a.b.d.b	ENSGT00940000157312	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00620000088018	ENSGT00390000014109	ENSGT00530000065109	ENSGT00510000048121	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00390000018330
Javanese ricefish	MODERN SPECIES	19	ENSOJAG00000013252	KCNQ2 (ENSOJAG00000011597)	ddx27 (ENSOJAG00000011492)	khk (ENSOJAG00000011383)	pltp (ENSOJAG00000010526)	EFCC1 (ENSOJAG00000010082)	CFAP57 (ENSOJAG00000010057)	isy1 (ENSOJAG00000010039)	rpp14 (ENSOJAG00000010026)	ENSOJAG00000009609 #10	pfkfb4a (ENSOJAG00000003803) #9	ARPC4 (ENSOJAG00000003075) #8	tada3l (ENSOJAG00000003061)	RBM38 (ENSOJAG00000003047) #21	rae1 (ENSOJAG00000003015)	bmp7a (ENSOJAG00000002999) #22	ENSOJAG00000002991 #23	ENSOJAG00000002977 #24	ENSOJAG00000002961	LSM14B (ENSOJAG00000002952)	ENSOJAG00000002896 #25	cdh4 (ENSOJAG00000001334) #26	ENSOJAG00000001046	ENSOJAG00000001033 #31	ZMYND8 (ENSOJAG00000000530) #32	ENSOJAG00000000167 #33	id1 (ENSOJAG00000000108) #34	sulf2a (ENSOJAG00000022902) #35	arhgap46a (ENSOJAG00000022861) #36	PHF20 (ENSOJAG00000022842) #37	ndrg3a (ENSOJAG00000022739)
Indian medaka	MODERN SPECIES	8	acad9 (ENSOMEG00000023899)	ENSOMEG00000023900	elk4 (ENSOMEG00000023901)	MFSD4A (ENSOMEG00000023902)	CDK18 (ENSOMEG00000023903)	CFAP57 (ENSOMEG00000023904)	isy1 (ENSOMEG00000023905)	HTD2 (ENSOMEG00000023906)	rpp14 (ENSOMEG00000023907)	mapkapk3 (ENSOMEG00000023908) #10	pfkfb4a (ENSOMEG00000023909) #9	arpc4 (ENSOMEG00000023910) #7	tada3l (ENSOMEG00000023911)	RBM38 (ENSOMEG00000023912) #21	rae1 (ENSOMEG00000023913)	bmp7a (ENSOMEG00000023914) #22	ENSOMEG00000023915 #24	ENSOMEG00000023916	LSM14B (ENSOMEG00000023917)	ENSOMEG00000023918 #25	cdh4 (ENSOMEG00000023919) #26	ENSOMEG00000023920 #31	ZMYND8 (ENSOMEG00000023921) #32	NCOA3 (ENSOMEG00000023922) #33	id1 (ENSOMEG00000023923) #34	sulf2a (ENSOMEG00000023924) #35	arhgap46a (ENSOMEG00000023925) #36	ENSOMEG00000023815 #37	ndrg3a (ENSOMEG00000000639)	ENSOMEG00000023796	trpc4apa (ENSOMEG00000023783)
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00550000074997	ENSGT00390000007458	ENSGT01100000263545.a.b.d.b	ENSGT00940000157312	ENSGT00940000163561	ENSGT00620000088018	ENSGT00390000014109	ENSGT00530000065109	ENSGT00510000048121	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331
Japanese Medaka HdrR	MODERN SPECIES	19	ddx27 (ENSORLG00000013059)	khk (ENSORLG00000013091)	pltp (ENSORLG00000013122)	acad9 (ENSORLG00000013206)	ENSORLG00000013213	CFAP57 (ENSORLG00000013222)	isy1 (ENSORLG00000013250)	HTD2 (ENSORLG00000013267)	RPP14 (ENSORLG00000028025)	ENSORLG00000013296 #10	pfkfb4a (ENSORLG00000013355) #9	arpc4 (ENSORLG00000001339) #8	tada3l (ENSORLG00000013394)	RBM38 (ENSORLG00000027180) #21	rae1 (ENSORLG00000013438)	bmp7a (ENSORLG00000013494) #22	ENSORLG00000027733 #24	ENSORLG00000026420	LSM14B (ENSORLG00000013525)	ENSORLG00000013539 #25	cdh4 (ENSORLG00000013559) #26	ENSORLG00000026944	ENSORLG00000022878	ENSORLG00000013611 #31	ENSORLG00000013704 #33	id1 (ENSORLG00000013719) #34	sulf2a (ENSORLG00000013752) #35	arhgap46a (ENSORLG00000013769) #36	PHF20 (ENSORLG00000013802) #37	ndrg3a (ENSORLG00000013821)	ENSORLG00000013828
Chinese medaka	MODERN SPECIES	655	ENSOSIG00000018446	ddx27 (ENSOSIG00000018428)	khk (ENSOSIG00000018418)	pltp (ENSOSIG00000017587)	acad9 (ENSOSIG00000017433)	EFCC1 (ENSOSIG00000017427)	isy1 (ENSOSIG00000017420)	HTD2 (ENSOSIG00000017415)	RPP14 (ENSOSIG00000017411)	ENSOSIG00000016984 #10	pfkfb4a (ENSOSIG00000016844) #9	arpc4 (ENSOSIG00000016829) #8	tada3l (ENSOSIG00000016827)	RBM38 (ENSOSIG00000016826) #21	rae1 (ENSOSIG00000016824)	bmp7a (ENSOSIG00000016656) #22	ENSOSIG00000016649 #23	ENSOSIG00000016647 #24	ENSOSIG00000016644	LSM14B (ENSOSIG00000016642)	ENSOSIG00000016641 #25	cdh4 (ENSOSIG00000016623) #26	ENSOSIG00000016614	ENSOSIG00000016612 #31	ENSOSIG00000016610 #31	ZMYND8 (ENSOSIG00000016569) #32	NCOA3 (ENSOSIG00000016560) #33	id1 (ENSOSIG00000016556) #34	sulf2a (ENSOSIG00000016461) #35	arhgap46a (ENSOSIG00000016450) #36	ENSOSIG00000016438 #37
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331
Aplocheiloidei	ANCESTRAL SPECIES	12	ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c
Mangrove rivulus	MODERN SPECIES	82	ENSKMAG00000006675	cidec (ENSKMAG00000006643) #17	ENSKMAG00000006617 #16	ip6k2a (ENSKMAG00000006577) #15	SEC61A1 (ENSKMAG00000006500) #14	chchd4a (ENSKMAG00000006473) #13	ENSKMAG00000006429 #12	ENSKMAG00000006394 #11	ENSKMAG00000006335 #11	mapkapk3 (ENSKMAG00000006287) #10	pfkfb4a (ENSKMAG00000006245) #9	ARPC4 (ENSKMAG00000006183) #8	tada3l (ENSKMAG00000006140)	ENSKMAG00000006096	rae1 (ENSKMAG00000006024)	bmp7a (ENSKMAG00000005984) #22	ENSKMAG00000005958 #24	ENSKMAG00000005930	ENSKMAG00000005898
Turquoise killifish	MODERN SPECIES	1619	CHD6 (ENSNFUG00015021686)	rspo4 (ENSNFUG00015021679)	BX927253.1 (ENSNFUG00015021674)	PTPRT (ENSNFUG00015017179)	ENSNFUG00015017042	Nfu_g_1_021471 (ENSNFUG00015017037)	GRIP2 (ENSNFUG00015015885)	SLC6A6A (ENSNFUG00015015269)	LSM3 (ENSNFUG00015015161)	Nfu_g_1_021249 (ENSNFUG00015014946)	RBM12 (ENSNFUG00015014576)	cpne1 (ENSNFUG00015012394)	ENSNFUG00015011278	ST3GAL2L (ENSNFUG00015011168)	Nfu_g_1_021715 (ENSNFUG00015011147)	bmp7a (ENSNFUG00015011111) #22	ENSNFUG00015011100 #23	C21H18ORF54 (ENSNFUG00015011083)	RBL1 (ENSNFUG00015010250)	ENSNFUG00015009792	OLA.7015 (ENSNFUG00015009753)	sec13 (ENSNFUG00015009728)	ANGPT4 (ENSNFUG00015009293)	cox6c (ENSNFUG00015009243)	ENSNFUG00015009234	STK4 (ENSNFUG00015008858)	KCNS1 (ENSNFUG00015008815)	ENSNFUG00015008805	ENSNFUG00015008796	ENSNFUG00015008791	ENSNFUG00015008786
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000154664.h.n.c.c	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36
NAME_4	ANCESTRAL SPECIES	96	ENSGT00940000158931 #19	ENSGT01100000265509	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296
Sheepshead minnow	MODERN SPECIES	1288										ENSCVAG00000005291 #10	pfkfb4a (ENSCVAG00000000972) #9	arpc4 (ENSCVAG00000005409) #8	tada3l (ENSCVAG00000005465)	RBM38 (ENSCVAG00000005472) #21	rae1 (ENSCVAG00000005499)	bmp7a (ENSCVAG00000000160) #22	ENSCVAG00000005527 #24	ENSCVAG00000005549	ENSCVAG00000005570	ENSCVAG00000005577 #25
Mummichog	MODERN SPECIES	2193	ENSFHEG00000005668	cidec (ENSFHEG00000005694) #17	ENSFHEG00000005742 #16	IP6K2 (ENSFHEG00000005750) #15	SEC61A1 (ENSFHEG00000005808) #14	chchd4a (ENSFHEG00000005818) #13	ENSFHEG00000000153 #12	ENSFHEG00000005843 #11	ENSFHEG00000005957 #11	mapkapk3 (ENSFHEG00000005970) #10	pfkfb4a (ENSFHEG00000006050) #9	ARPC4 (ENSFHEG00000006069) #8	tada3l (ENSFHEG00000006115)	RBM38 (ENSFHEG00000006160) #21	rae1 (ENSFHEG00000006179)	bmp7a (ENSFHEG00000006206) #22	ENSFHEG00000000168 #24	ENSFHEG00000006228	LSM14B (ENSFHEG00000006237)	TAF4 (ENSFHEG00000006248) #25	ENSFHEG00000006261 #26	cdh4 (ENSFHEG00000006543) #26	ENSFHEG00000006572
Poeciliinae	DUPLICATION
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000156490.b.b.e #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000156490.b.b.e #22
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000156490.b.b.e #22
Sailfin molly	MODERN SPECIES	3926																BMP7 (ENSPLAG00000018898) #22	irf10 (ENSPLAG00000018876)
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b.f #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000154664.h.n.c.c	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36
Poecilia	ANCESTRAL SPECIES	20	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b.f #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000154664.h.n.c.c	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
NAME_6	ANCESTRAL SPECIES	87	ENSGT00940000169986	ENSGT00940000154394.b.a.b.x	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b.f #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000154664.h.n.c.c	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Amazon molly	MODERN SPECIES	397	ENSPFOG00000003991	cidec (ENSPFOG00000004066) #17	ENSPFOG00000024535 #16	ENSPFOG00000004110 #16	ip6k2a (ENSPFOG00000004132) #15	SEC61A1 (ENSPFOG00000004249) #14	chchd4a (ENSPFOG00000004345) #13	ENSPFOG00000004349 #12	ENSPFOG00000022968 #11	mapkapk3 (ENSPFOG00000004547) #10	pfkfb4a (ENSPFOG00000004751) #9	arpc4 (ENSPFOG00000004975) #8	tada3l (ENSPFOG00000005009)	ENSPFOG00000005096	rae1 (ENSPFOG00000005141)	bmp7a (ENSPFOG00000005295) #22	ENSPFOG00000023374 #23	ENSPFOG00000005524 #24	ENSPFOG00000005537	LSM14B (ENSPFOG00000005631)	ENSPFOG00000005685 #25	cdh4 (ENSPFOG00000005823) #26	KLHL10 (ENSPFOG00000006200)	KCNK15 (ENSPFOG00000006298) #27	ogfr2 (ENSPFOG00000006323) #29	ENSPFOG00000006372 #31	ZMYND8 (ENSPFOG00000006444) #32	NCOA3 (ENSPFOG00000006902) #33	id1 (ENSPFOG00000020643) #34	sulf2a (ENSPFOG00000007237) #35	arhgap46a (ENSPFOG00000007534) #36
Sailfin molly	MODERN SPECIES	569	ENSPLAG00000002751	ENSPLAG00000002746	cidec (ENSPLAG00000000041) #17	ENSPLAG00000002739	ip6k2a (ENSPLAG00000002717) #15	SEC61A1 (ENSPLAG00000002699) #14	chchd4a (ENSPLAG00000002678) #13	ENSPLAG00000002673 #12	DNAH1 (ENSPLAG00000002643) #11	mapkapk3 (ENSPLAG00000002567) #10	pfkfb4a (ENSPLAG00000002556) #9	arpc4 (ENSPLAG00000002517) #8	tada3l (ENSPLAG00000002510)	RBM38 (ENSPLAG00000002500) #21	rae1 (ENSPLAG00000002492)	bmp7a (ENSPLAG00000002472) #22	ENSPLAG00000002454 #24	ENSPLAG00000002449	ENSPLAG00000002446 #25
Guppy	MODERN SPECIES	457	ENSPREG00000017658 #16	ip6k2a (ENSPREG00000017602) #15	SEC61A1 (ENSPREG00000017561) #14	chchd4a (ENSPREG00000017537) #13	ENSPREG00000017523 #12	ENSPREG00000017506	ENSPREG00000017486 #11	ENSPREG00000017468 #11	ENSPREG00000017427 #11	mapkapk3 (ENSPREG00000017075) #10	pfkfb4a (ENSPREG00000016856) #9	ARPC4 (ENSPREG00000016817) #8	tada3l (ENSPREG00000016773)	ENSPREG00000016652	rae1 (ENSPREG00000016576)	bmp7a (ENSPREG00000016545) #22	ENSPREG00000016531 #24	ENSPREG00000016484	ENSPREG00000016418 #25	cdh4 (ENSPREG00000016351) #26	CDH22 (ENSPREG00000016269)	tfap2c (ENSPREG00000016210)	GCNT7 (ENSPREG00000016184)	rtf2 (ENSPREG00000016166)	eya2 (ENSPREG00000016135)	tgm5l (ENSPREG00000016059)	pxmp4 (ENSPREG00000016021)	tgm5l (ENSPREG00000015982)	pxmp4 (ENSPREG00000015951)	itcha (ENSPREG00000015924)	bloc1s1 (ENSPREG00000015906)
Platyfish	MODERN SPECIES	12	ENSXMAG00000022723 #16	ip6k2a (ENSXMAG00000023264) #15	SEC61A1 (ENSXMAG00000010245) #14	chchd4a (ENSXMAG00000010240) #13	ENSXMAG00000010223 #12	ENSXMAG00000027752	ENSXMAG00000029051 #11	ENSXMAG00000028173 #11	ENSXMAG00000010195 #11	mapkapk3 (ENSXMAG00000010191) #10	pfkfb4a (ENSXMAG00000010108) #9	arpc4 (ENSXMAG00000010093) #8	tada3l (ENSXMAG00000010075)	ENSXMAG00000028579	rae1 (ENSXMAG00000010051)	bmp7a (ENSXMAG00000010031) #22	ENSXMAG00000010028 #24	ENSXMAG00000010019	ENSXMAG00000010013	ENSXMAG00000010003 #25	KLHL10 (ENSXMAG00000009983)	ENSXMAG00000025212	ENSXMAG00000026588	ENSXMAG00000026384	cdh4 (ENSXMAG00000009921) #26	KCNK15 (ENSXMAG00000027413) #27	ENSXMAG00000009909 #29	ENSXMAG00000009898 #31	ZMYND8 (ENSXMAG00000009815) #32	NCOA3 (ENSXMAG00000001970) #33	id1 (ENSXMAG00000027482) #34
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT01100000265393	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36
Eupercaria	ANCESTRAL SPECIES		ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT01100000265393	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36
Tetraodontidae	ANCESTRAL SPECIES	1	ENSGT00940000166173	ENSGT00510000046608.B	ENSGT00940000157279	ENSGT00390000002873	ENSGT00940000164201.c.a	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000161997.b	ENSGT00940000156785	ENSGT00940000155637	ENSGT00390000006330.a.b	ENSGT00670000099474	ENSGT00950000183038.a.b.a.g	ENSGT00940000157144.c.a	ENSGT01000000214440.B	ENSGT00940000164642	ENSGT00940000155330.c	ENSGT00950000182908.B.c.a
Fugu	MODERN SPECIES	10	slc2a9l1 (ENSTRUG00000008778)	psmd6 (ENSTRUG00000009312)	ATXN7 (ENSTRUG00000009469)	thoc7 (ENSTRUG00000029292)	mxa (ENSTRUG00000009739)	ip6k2a (ENSTRUG00000020006) #15	SEC61A1 (ENSTRUG00000010155) #14	chchd4a (ENSTRUG00000025793) #13	ENSTRUG00000010374 #12	mapkapk3 (ENSTRUG00000010458) #10	pfkfb4a (ENSTRUG00000022003) #9	arpc4 (ENSTRUG00000010785) #8	tada3l (ENSTRUG00000010855)	RBM38 (ENSTRUG00000019869) #21	rae1 (ENSTRUG00000011042)	bmp7a (ENSTRUG00000011215) #22	ENSTRUG00000028328 #23	LSM14B (ENSTRUG00000011354)	TAF4 (ENSTRUG00000011488) #25	cdh4 (ENSTRUG00000011567) #26	ENSTRUG00000012201	ENSTRUG00000012227	ENSTRUG00000020708	nab2 (ENSTRUG00000012284)	ENSTRUG00000024271	NR4A1 (ENSTRUG00000012317)	DGKA (ENSTRUG00000012452)	STX16 (ENSTRUG00000024770)	cnpy2 (ENSTRUG00000012744)	slc11a2 (ENSTRUG00000012806)	ANKRD52 (ENSTRUG00000013030)
Tetraodon	MODERN SPECIES	2	prickle2b (ENSTNIG00000011137)	slc2a9l1 (ENSTNIG00000011138)	psmd6 (ENSTNIG00000011139)	ATXN7 (ENSTNIG00000011140)	thoc7 (ENSTNIG00000006681)	MX1 (ENSTNIG00000006682)	ip6k2a (ENSTNIG00000007100) #15	SEC61A1 (ENSTNIG00000007099) #14	chchd4a (ENSTNIG00000007098) #13	mapkapk3 (ENSTNIG00000007097) #10	pfkfb4a (ENSTNIG00000007096) #9	ARPC4 (ENSTNIG00000007095) #8	tada3l (ENSTNIG00000007094)	RBM38 (ENSTNIG00000007093) #21	rae1 (ENSTNIG00000007092)	bmp7a (ENSTNIG00000007091) #22	ENSTNIG00000007090 #24	LSM14B (ENSTNIG00000002445)	TAF4 (ENSTNIG00000007089) #25	cdh4 (ENSTNIG00000007088) #26	ENSTNIG00000007087	ENSTNIG00000007086	ENSTNIG00000007085	nab2 (ENSTNIG00000007084)	NR4A1 (ENSTNIG00000007083)	DGKA (ENSTNIG00000007082)	STX16 (ENSTNIG00000007081)	cnpy2 (ENSTNIG00000007080)	slc11a2 (ENSTNIG00000007079)	ANKRD52 (ENSTNIG00000007078)	npepl1 (ENSTNIG00000001641)
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT01100000265393	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36
Ballan wrasse	MODERN SPECIES	61	MYL2 (ENSLBEG00000015548)	CIT (ENSLBEG00000015599)	crybb3 (ENSLBEG00000015743)	ENSLBEG00000015787	SEC61A1 (ENSLBEG00000015811) #14	chchd4a (ENSLBEG00000015886) #13	ENSLBEG00000015858 #12	ENSLBEG00000015912 #11	mapkapk3 (ENSLBEG00000015951) #10	pfkfb4a (ENSLBEG00000015991) #9	ENSLBEG00000016013	ARPC4 (ENSLBEG00000016032) #8	tada3l (ENSLBEG00000016074)	RBM38 (ENSLBEG00000016163) #21	rae1 (ENSLBEG00000016318)	bmp7a (ENSLBEG00000016352) #22	ENSLBEG00000016364 #24	ENSLBEG00000016384	LSM14B (ENSLBEG00000016427)	ENSLBEG00000016461 #25	cdh4 (ENSLBEG00000016522) #26	ENSLBEG00000016578 #27	ogfr2 (ENSLBEG00000016615) #29	ENSLBEG00000016645 #31	ZMYND8 (ENSLBEG00000016737) #32	NCOA3 (ENSLBEG00000016835) #33	id1 (ENSLBEG00000016873) #34	sulf2a (ENSLBEG00000016951) #35	arhgap46a (ENSLBEG00000017106) #36	ENSLBEG00000017148 #37	ndrg3a (ENSLBEG00000017241)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT01100000265393	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36
Perciformes	ANCESTRAL SPECIES		ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT01100000265393	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000177296	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT01100000265393	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Pike perch	MODERN SPECIES	11	uqcrc1 (ENSSLUG00000014603) #19	ENSSLUG00000018066	cidec (ENSSLUG00000018069) #17	ENSSLUG00000018082 #16	ip6k2a (ENSSLUG00000018105) #15	SEC61A1 (ENSSLUG00000018118) #14	chchd4a (ENSSLUG00000018298) #13	ENSSLUG00000018301 #12	DNAH1 (ENSSLUG00000018382) #11	mapkapk3 (ENSSLUG00000019098) #10	pfkfb4a (ENSSLUG00000019258) #9	ARPC4 (ENSSLUG00000019311) #8	tada3l (ENSSLUG00000019358)	RBM38 (ENSSLUG00000019363) #21	rae1 (ENSSLUG00000019370)	bmp7a (ENSSLUG00000019378) #22	ENSSLUG00000019385 #24	LSM14B (ENSSLUG00000019388)	ENSSLUG00000019391 #25	cdh4 (ENSSLUG00000019440) #26	ENSSLUG00000020087	ENSSLUG00000020091 #27	ogfr2 (ENSSLUG00000020094) #29	ENSSLUG00000020096 #31	ENSSLUG00000020099 #31	ZMYND8 (ENSSLUG00000020124) #32	NCOA3 (ENSSLUG00000020177) #33	id1 (ENSSLUG00000020181) #34	sulf2a (ENSSLUG00000020211) #35	arhgap46a (ENSSLUG00000020428) #36	PHF20 (ENSSLUG00000020439) #37
Channel bull blenny	MODERN SPECIES	19	ENSCGOG00000015623 #16	IP6K2 (ENSCGOG00000015621) #15	SEC61A1 (ENSCGOG00000015165) #14	chchd4a (ENSCGOG00000015158) #13	ENSCGOG00000015154 #12	ENSCGOG00000015151 #11	ENSCGOG00000015146 #11	ENSCGOG00000015141 #11	ENSCGOG00000015131 #11	mapkapk3 (ENSCGOG00000015127) #10	ARPC4 (ENSCGOG00000015115) #8	pfkfb4a (ENSCGOG00000009602) #9	tada3l (ENSCGOG00000009306)	RBM38 (ENSCGOG00000009303) #21	rae1 (ENSCGOG00000009039)	bmp7a (ENSCGOG00000009027) #22	ENSCGOG00000009024 #23	ENSCGOG00000009017 #24	LSM14B (ENSCGOG00000009013)	ENSCGOG00000008986 #25	cdh4 (ENSCGOG00000006404) #26	ENSCGOG00000006369 #27	ogfr2 (ENSCGOG00000006367) #29	ENSCGOG00000006364	ENSCGOG00000006359 #31	ENSCGOG00000006357 #31	ZMYND8 (ENSCGOG00000005046) #32	ENSCGOG00000005006	NCOA3 (ENSCGOG00000004967) #33	id1 (ENSCGOG00000004959) #34	sulf2a (ENSCGOG00000002949) #35
Cottioidei	ANCESTRAL SPECIES		ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00390000002821	ENSGT00940000155532 #31	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Lumpfish	MODERN SPECIES	20	cdk5rap1 (ENSCLMG00005020152)	ghrh (ENSCLMG00005020149)	rpn2 (ENSCLMG00005019160)	mybl2b (ENSCLMG00005019116)	ift52 (ENSCLMG00005019114)	acot8 (ENSCLMG00005019113)	SEC61A1 (ENSCLMG00005018984) #14	chchd4a (ENSCLMG00005018980) #13	ENSCLMG00005018979 #12	mapkapk3 (ENSCLMG00005018910) #10	pfkfb4a (ENSCLMG00005018594) #9	arpc4 (ENSCLMG00005018588) #8	tada3l (ENSCLMG00005018586)	RBM38 (ENSCLMG00005018583) #21	rae1 (ENSCLMG00005018580)	bmp7a (ENSCLMG00005018443) #22	ENSCLMG00005018440	ENSCLMG00005018439	LSM14B (ENSCLMG00005018438)	TAF4 (ENSCLMG00005018437) #25	cdh4 (ENSCLMG00005018116) #26	ENSCLMG00005018102 #27	ogfr2 (ENSCLMG00005018101) #29	ENSCLMG00005018100 #31	ZMYND8 (ENSCLMG00005015600) #32	NCOA3 (ENSCLMG00005015587) #33	id1 (ENSCLMG00005015586) #34	sulf2a (ENSCLMG00005015041) #35	arhgap46a (ENSCLMG00005015029) #36	PHF20 (ENSCLMG00005015025) #37	ndrg3a (ENSCLMG00005014900)
Stickleback	MODERN SPECIES	17	ENSGACG00000009672 #20	uqcrc1 (ENSGACG00000009682) #19	cidec (ENSGACG00000009696) #17	ENSGACG00000009699 #16	ip6k2a (ENSGACG00000009703) #15	SEC61A1 (ENSGACG00000009707) #14	chchd4a (ENSGACG00000009778) #13	ENSGACG00000009779 #12	ENSGACG00000009785 #11	mapkapk3 (ENSGACG00000009789) #10	pfkfb4a (ENSGACG00000009822) #9	arpc4 (ENSGACG00000009846) #8	tada3l (ENSGACG00000009851)	RBM38 (ENSGACG00000009873) #21	rae1 (ENSGACG00000009882)	bmp7a (ENSGACG00000009945) #22	ENSGACG00000009971 #24	LSM14B (ENSGACG00000009973)	ENSGACG00000009979 #25	cdh4 (ENSGACG00000009983) #26	KCNK15 (ENSGACG00000009987) #27	ogfr2 (ENSGACG00000009988) #29	ENSGACG00000009996 #31	ZMYND8 (ENSGACG00000010012) #32	NCOA3 (ENSGACG00000010036) #33	id1 (ENSGACG00000010046) #34	sulf2a (ENSGACG00000010055) #35	arhgap46a (ENSGACG00000010079) #36	PHF20 (ENSGACG00000010085) #37	ndrg3a (ENSGACG00000010090)	trpc4apa (ENSGACG00000010137)
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00940000154857.yb.b #20	ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b
European seabass	MODERN SPECIES	10	ENSDLAG00005020141 #20	ENSDLAG00005019752 #19	ENSDLAG00005028002	ENSDLAG00005019692 #17	ENSDLAG00005033303 #16	ENSDLAG00005019685 #15	ENSDLAG00005019522 #14	MIA40 (ENSDLAG00005028012) #13	ENSDLAG00005019493 #12	ENSDLAG00005014576 #11	pfkfb4a (ENSDLAG00005014215) #9	ENSDLAG00005014141 #8	ENSDLAG00005014119	RB24B (ENSDLAG00005034430) #21	RAE1 (ENSDLAG00005014085)	BMP7B (ENSDLAG00005034944) #22	ENSDLAG00005014053 #23	ENSDLAG00005014027 #24	LSM14B (ENSDLAG00005013965)	ENSDLAG00005013961 #25	CDH4 (ENSDLAG00005011657) #26	ENSDLAG00005029634 #27	ogfr2 (ENSDLAG00005026653) #29	ENSDLAG00005011550 #31	ZMYND8 (ENSDLAG00005008873) #32	ENSDLAG00005008706 #33	ID1 (ENSDLAG00005033925) #34	sulf2a (ENSDLAG00005007742) #35	arhgap46a (ENSDLAG00005007687) #36	ENSDLAG00005007665 #37	ndrg3a (ENSDLAG00005006458)
Large yellow croaker	MODERN SPECIES	478	ENSLCRG00005012468 #20	uqcrc1 (ENSLCRG00005012515) #19	ENSLCRG00005014638	cidec (ENSLCRG00005014639) #17	ENSLCRG00005014640 #16	ip6k2a (ENSLCRG00005014641) #15	SEC61A1 (ENSLCRG00005014642) #14	chchd4a (ENSLCRG00005014650) #13	ENSLCRG00005014651 #12	DNAH1 (ENSLCRG00005014671) #11	ARPC4 (ENSLCRG00005014774) #8	pfkfb4a (ENSLCRG00005014790) #9	tada3l (ENSLCRG00005015134)	RBM38 (ENSLCRG00005015135) #21	rae1 (ENSLCRG00005015136)	bmp7a (ENSLCRG00005015137) #22	ENSLCRG00005015139 #23	ENSLCRG00005015141 #24	ENSLCRG00005015148	LSM14B (ENSLCRG00005015149)	ENSLCRG00005015150 #25	cdh4 (ENSLCRG00005015193) #26	ENSLCRG00005018208 #27	ogfr2 (ENSLCRG00005018210) #29	ENSLCRG00005018211 #31	ZMYND8 (ENSLCRG00005018242) #32	NCOA3 (ENSLCRG00005020827) #33	id1 (ENSLCRG00005020828) #34	sulf2a (ENSLCRG00005020839) #35	arhgap46a (ENSLCRG00005021550) #36	PHF20 (ENSLCRG00005021552) #37
Gilthead seabream	MODERN SPECIES	20	ENSSAUG00010012386	cidec (ENSSAUG00010012388) #17	ENSSAUG00010012392 #16	ip6k2a (ENSSAUG00010012394) #15	SEC61A1 (ENSSAUG00010000321) #14	ENSSAUG00010000364	chchd4a (ENSSAUG00010000373) #13	ENSSAUG00010000378 #12	DNAH1 (ENSSAUG00010000485) #11	mapkapk3 (ENSSAUG00010000892) #10	pfkfb4a (ENSSAUG00010000909) #9	ARPC4 (ENSSAUG00010000982) #8	tada3l (ENSSAUG00010000984)	RBM38 (ENSSAUG00010000986) #21	rae1 (ENSSAUG00010000992)	bmp7a (ENSSAUG00010001062) #22	ENSSAUG00010001064 #23	ENSSAUG00010001065 #24	LSM14B (ENSSAUG00010001066)	TAF4 (ENSSAUG00010001070) #25	cdh4 (ENSSAUG00010001139) #26	ENSSAUG00010006592 #27	ogfr2 (ENSSAUG00010006601) #29	ENSSAUG00010006604 #31	ZMYND8 (ENSSAUG00010006668) #32	ENSSAUG00010010183	id1 (ENSSAUG00010010185) #34	sulf2a (ENSSAUG00010010207) #35	arhgap46a (ENSSAUG00010010993) #36	PHF20 (ENSSAUG00010010994) #37	ndrg3a (ENSSAUG00010011005)
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT01100000265393	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT01100000265393	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b
Seriola	ANCESTRAL SPECIES	10	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000174829	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331
Greater amberjack	MODERN SPECIES	37	uqcrc1 (ENSSDUG00000021610) #19	ENSSDUG00000021604	cidec (ENSSDUG00000021599) #17	ENSSDUG00000021574 #16	ip6k2a (ENSSDUG00000021556) #15	SEC61A1 (ENSSDUG00000021526) #14	chchd4a (ENSSDUG00000021516) #13	ENSSDUG00000021490 #12	DNAH1 (ENSSDUG00000021400) #11	mapkapk3 (ENSSDUG00000021242) #10	pfkfb4a (ENSSDUG00000021138) #9	ARPC4 (ENSSDUG00000021114) #8	tada3l (ENSSDUG00000021092)	RBM38 (ENSSDUG00000021082) #21	rae1 (ENSSDUG00000021046)	bmp7a (ENSSDUG00000021030) #22	ENSSDUG00000021025 #24	ENSSDUG00000020987	LSM14B (ENSSDUG00000020977)	ENSSDUG00000020966 #25	cdh4 (ENSSDUG00000020918) #26	ENSSDUG00000020910 #27	ogfr2 (ENSSDUG00000020893) #29	ENSSDUG00000020864 #31	ZMYND8 (ENSSDUG00000020647) #32	NCOA3 (ENSSDUG00000020589) #33	id1 (ENSSDUG00000020580) #34	sulf2a (ENSSDUG00000020359) #35	arhgap46a (ENSSDUG00000020279) #36	PHF20 (ENSSDUG00000020220) #37	ndrg3a (ENSSDUG00000020098)
Yellowtail amberjack	MODERN SPECIES	3158	ENSSLDG00000012242 #16	ip6k2a (ENSSLDG00000012210) #15	SEC61A1 (ENSSLDG00000012148) #14	chchd4a (ENSSLDG00000012134) #13	ENSSLDG00000012118 #12	ENSSLDG00000012100	ENSSLDG00000012047 #11	ENSSLDG00000012027 #11	ENSSLDG00000011978 #11	mapkapk3 (ENSSLDG00000011948) #10	pfkfb4a (ENSSLDG00000011879) #9	arpc4 (ENSSLDG00000011829) #8	tada3l (ENSSLDG00000011797)	RBM38 (ENSSLDG00000011778) #21	rae1 (ENSSLDG00000011747)	bmp7a (ENSSLDG00000011732) #22	ENSSLDG00000011714 #24	ENSSLDG00000011706	ENSSLDG00000011678	TAF4 (ENSSLDG00000011644) #25	ENSSLDG00000011622	cdh4 (ENSSLDG00000011438) #26
Barramundi perch	MODERN SPECIES	93	uqcrc1 (ENSLCAG00010022100) #19	ENSLCAG00010022013	cidec (ENSLCAG00010022007) #17	ENSLCAG00010022004 #16	ip6k2a (ENSLCAG00010022002) #15	SEC61A1 (ENSLCAG00010021890) #14	chchd4a (ENSLCAG00010021865) #13	ENSLCAG00010021861 #12	DNAH1 (ENSLCAG00010021659) #11	mapkapk3 (ENSLCAG00010021600) #10	pfkfb4a (ENSLCAG00010021278) #9	arpc4 (ENSLCAG00010021203) #8	tada3l (ENSLCAG00010021200)	RBM38 (ENSLCAG00010021196) #21	rae1 (ENSLCAG00010021188)	bmp7a (ENSLCAG00010021187) #22	ENSLCAG00010021186 #23	ENSLCAG00010021185 #24	ENSLCAG00010021184	LSM14B (ENSLCAG00010021182)	ENSLCAG00010021180 #25	cdh4 (ENSLCAG00010021125) #26	ENSLCAG00010021094 #27	ENSLCAG00010021083 #31	ZMYND8 (ENSLCAG00010020497) #32	NCOA3 (ENSLCAG00010020363) #33	id1 (ENSLCAG00010020359) #34	sulf2a (ENSLCAG00010020064) #35	arhgap46a (ENSLCAG00010019930) #36	ENSLCAG00010019926 #37	ENSLCAG00010019917 #37
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT01100000265393	ENSGT00940000155532 #31	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36
Turbot	MODERN SPECIES	18	ENSSMAG00000011651 #20	ENSSMAG00000011670 #19	ENSSMAG00000011716	ENSSMAG00000011721 #17	ENSSMAG00000029403 #16	ENSSMAG00000011753 #15	ENSSMAG00000011790 #14	chchd4a (ENSSMAG00000011850) #13	ENSSMAG00000011854 #12	ENSSMAG00000011918 #11	pfkfb4a (ENSSMAG00000012091) #9	ENSSMAG00000012173 #8	ENSSMAG00000012632	RBM38 (ENSSMAG00000012663) #21	RAE1 (ENSSMAG00000012667)	bmp7a (ENSSMAG00000012679) #22	ENSSMAG00000031066 #23	ENSSMAG00000012701 #24	ENSSMAG00000012715	LSM14B (ENSSMAG00000012725)	ENSSMAG00000012736 #25	CDH4 (ENSSMAG00000012762) #26	ENSSMAG00000012838 #27	ogfr2 (ENSSMAG00000012850) #29	ENSSMAG00000012877	ENSSMAG00000012892 #31	ENSSMAG00000012925 #32	ENSSMAG00000013056 #33	id1 (ENSSMAG00000013135) #34	sulf2a (ENSSMAG00000013143) #35	arhgap46a (ENSSMAG00000013248) #36
Tongue sole	MODERN SPECIES	2	RASSF5 (ENSCSEG00000004510)	ikbke (ENSCSEG00000004513)	srgap2 (ENSCSEG00000004520)	zgc:101564 (ENSCSEG00000004524)	foxp4 (ENSCSEG00000004532)	ENSCSEG00000004559	tfeb (ENSCSEG00000004566)	tmem183a (ENSCSEG00000004576)	ppfia4 (ENSCSEG00000004589)	myog (ENSCSEG00000004665)	mdm4 (ENSCSEG00000004669)	sort1a (ENSCSEG00000004676)	psma5 (ENSCSEG00000004690)	RBM38 (ENSCSEG00000004701) #21	rae1 (ENSCSEG00000004706)	bmp7a (ENSCSEG00000004712) #22	ENSCSEG00000004715 #24	ENSCSEG00000004718	LSM14B (ENSCSEG00000004722)	ENSCSEG00000004725 #25	ENSCSEG00000004737 #26	ENSCSEG00000004739	chchd6b (ENSCSEG00000004751)	tpra1 (ENSCSEG00000004756)	ENSCSEG00000004759	LPIN3 (ENSCSEG00000004764)	myl9a (ENSCSEG00000004790)	ENSCSEG00000004794	ENSCSEG00000004799	ENSCSEG00000004807	quo (ENSCSEG00000004824)
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000020258 #19	ENSMAMG00000026596	ENSMAMG00000006817 #17	ENSMAMG00000020309 #16	ENSMAMG00000020358 #15	ENSMAMG00000020367 #14	chchd4a (ENSMAMG00000024262) #13	ENSMAMG00000020386 #12	ENSMAMG00000020411 #11	mapkapk3 (ENSMAMG00000020448) #10	pfkfb4a (ENSMAMG00000020455) #9	ENSMAMG00000020477 #8	ENSMAMG00000020485	RBM38 (ENSMAMG00000026027) #21	RAE1 (ENSMAMG00000020502)	BMP7 (ENSMAMG00000020511) #22	ENSMAMG00000026183 #23	ENSMAMG00000020528 #24	LSM14B (ENSMAMG00000020539)	ENSMAMG00000020545 #25	CDH4 (ENSMAMG00000020558) #26	ENSMAMG00000020729 #27	ogfr2 (ENSMAMG00000028481) #29	ENSMAMG00000027716 #31	ENSMAMG00000020799 #32	ENSMAMG00000020835 #34	ENSMAMG00000027125	sulf2a (ENSMAMG00000020845) #35	arhgap46a (ENSMAMG00000020882) #36	ENSMAMG00000020899 #37	ndrg3a (ENSMAMG00000020915)
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00940000158931 #19	ENSGT00940000169986	ENSGT00390000018596.A.a.a #17	ENSGT01050000244841.A.b.b.b.a #16	ENSGT00940000156310.p #15	ENSGT00390000003721.d.a.g.a #14	ENSGT00390000013132.b.a #13	ENSGT00940000166464 #12	ENSGT00940000154791 #11	ENSGT00940000154089.a.c #10	ENSGT00950000182835.c.d.c.a #9	ENSGT00390000016233.e.a #8	ENSGT00390000008947	ENSGT00940000158489.a.b #21	ENSGT00950000183091.B.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00940000156010.eb	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000166926 #35	ENSGT00940000164502.a.b #36	ENSGT00940000156477.d.a #37	ENSGT00950000182872.f.a.a.a.b
Siamese fighting fish	MODERN SPECIES	16	ENSBSLG00000008792	cidec (ENSBSLG00000008801) #17	ENSBSLG00000008857 #16	ip6k2a (ENSBSLG00000008920) #15	SEC61A1 (ENSBSLG00000008963) #14	chchd4a (ENSBSLG00000009054) #13	ENSBSLG00000009070 #12	DNAH1 (ENSBSLG00000009294) #11	ENSBSLG00000012877	mapkapk3 (ENSBSLG00000012888) #10	pfkfb4a (ENSBSLG00000013352) #9	ARPC4 (ENSBSLG00000013860) #8	tada3l (ENSBSLG00000013887)	ENSBSLG00000013906	rae1 (ENSBSLG00000013920)	bmp7a (ENSBSLG00000013978) #22	ENSBSLG00000013991 #23	ENSBSLG00000013993 #24	LSM14B (ENSBSLG00000014018)	TAF4 (ENSBSLG00000014026) #25	cdh4 (ENSBSLG00000014283) #26	ENSBSLG00000016388	ENSBSLG00000016576 #27	ogfr2 (ENSBSLG00000016625) #29	ENSBSLG00000016672 #31	ENSBSLG00000016705 #31	ZMYND8 (ENSBSLG00000017118) #32	NCOA3 (ENSBSLG00000021022) #33	id1 (ENSBSLG00000021125) #34	sulf2a (ENSBSLG00000021353) #35	arhgap46a (ENSBSLG00000022463) #36
Climbing perch	MODERN SPECIES	18	ENSATEG00000017223	ENSATEG00000017162 #20	ENSATEG00000017132 #19	ENSATEG00000017126	ENSATEG00000017110 #17	ENSATEG00000017104 #16	ENSATEG00000017072 #15	ENSATEG00000017023 #14	chchd4a (ENSATEG00000025788) #13	ENSATEG00000016990 #12	pfkfb4a (ENSATEG00000016787) #9	ENSATEG00000016840 #8	ENSATEG00000016724	RBM38 (ENSATEG00000016710) #21	RAE1 (ENSATEG00000016689)	bmp7a (ENSATEG00000016678) #22	ENSATEG00000027080 #23	ENSATEG00000016649 #24	ENSATEG00000016618	LSM14B (ENSATEG00000029061)	ENSATEG00000028405 #25	CDH4 (ENSATEG00000016519) #26	ENSATEG00000016484 #27	ogfr2 (ENSATEG00000016414) #29	ENSATEG00000028433 #31	ENSATEG00000016340 #32	ENSATEG00000016287 #33	id1 (ENSATEG00000027640) #34	sulf2a (ENSATEG00000016107) #35	arhgap46a (ENSATEG00000016027) #36	ENSATEG00000015958 #37
Otomorpha	ANCESTRAL SPECIES	142	ENSGT00590000083094.a.a.c.a	ENSGT00940000160100	ENSGT00390000005214	ENSGT00940000155048.d.a	ENSGT00510000047967	ENSGT00390000011228.b.a.e.a	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000157448	ENSGT00390000018321	ENSGT00940000159273	ENSGT00940000158320	ENSGT00390000003017.c.a	ENSGT00550000074884	ENSGT00940000165342.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00390000011620.a.a.b.e #25
Clupeiformes	ANCESTRAL SPECIES	76	ENSGT00950000182998.C.b.b	ENSGT00940000158328	ENSGT01030000234595.B.c.a.d	ENSGT00390000016901.a	ENSGT00940000165239.a	ENSGT00390000011082	ENSGT00940000157127.b	ENSGT00940000155125.a.b	ENSGT00940000157448	ENSGT00390000018321	ENSGT00940000159273	ENSGT00940000158320	ENSGT00390000003017.c.a	ENSGT00550000074884	ENSGT00940000165342.b	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000155532.yd.a #31	ENSGT00940000155532.yd.b #31	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915.f.b	ENSGT00940000156308	ENSGT00940000156047.a	ENSGT00940000158523.c.b
Denticle herring	MODERN SPECIES	3	ENSDCDG00000017103	ENSDCDG00000017104	nuf2 (ENSDCDG00000017105)	rab43 (ENSDCDG00000017106)	zgc:77375 (ENSDCDG00000017107)	isy1 (ENSDCDG00000017109)	ENSDCDG00000017113	slc38a3a (ENSDCDG00000017180)	gnai2a (ENSDCDG00000021758)	nek4 (ENSDCDG00000021767)	spcs1 (ENSDCDG00000021776)	glt8d1 (ENSDCDG00000021782)	gnl3 (ENSDCDG00000021801)	PBRM1 (ENSDCDG00000021931)	cse1l (ENSDCDG00000025543)	bmp7a (ENSDCDG00000025594) #22	ENSDCDG00000025601 #23	ENSDCDG00000025605 #24	ENSDCDG00000025615 #25	cdh4 (ENSDCDG00000025716) #26	ogfr2 (ENSDCDG00000027183) #29	ENSDCDG00000027185 #31	ENSDCDG00000027186 #31	ENSDCDG00000027187	ENSDCDG00000027189	acad9 (ENSDCDG00000027197)	IQSEC1 (ENSDCDG00000027239)	hdac11 (ENSDCDG00000028598)	FBLN2 (ENSDCDG00000028608)	wnt7aa (ENSDCDG00000028626)	ptpdc1a (ENSDCDG00000028640)
Atlantic herring	MODERN SPECIES	21	nuf2 (ENSCHAG00000022403)	rab43 (ENSCHAG00000022422)	zgc:77375 (ENSCHAG00000022429)	isy1 (ENSCHAG00000022451)	BRK1 (ENSCHAG00000022547)	slc38a3a (ENSCHAG00000022606)	gnai2a (ENSCHAG00000023506)	ENSCHAG00000023548	nek4 (ENSCHAG00000023572)	spcs1 (ENSCHAG00000023587)	glt8d1 (ENSCHAG00000023598)	gnl3 (ENSCHAG00000023603)	PBRM1 (ENSCHAG00000023670)	cse1l (ENSCHAG00000025206)	ENSCHAG00000025328	bmp7a (ENSCHAG00000025373) #22	ENSCHAG00000025524 #24	ENSCHAG00000025527 #25	cdh4 (ENSCHAG00000025571) #26	ENSCHAG00000026215 #27	ENSCHAG00000026218 #29	ENSCHAG00000026219 #31	ENSCHAG00000026223 #31	ENSCHAG00000026226	ENSCHAG00000026231	acad9 (ENSCHAG00000026242)	IQSEC1 (ENSCHAG00000026309)	hdac11 (ENSCHAG00000026731)	FBLN2 (ENSCHAG00000026752)	wnt7aa (ENSCHAG00000026868)	ENSCHAG00000026871
Otophysi	ANCESTRAL SPECIES	211	ENSGT00940000154554.a.e	ENSGT00940000154554.a.f	ENSGT00940000156315.e.b	ENSGT00390000009630	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00390000011228.b.a.e.a	ENSGT00510000047967	ENSGT00940000155048.d.a.k	ENSGT00550000074884	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000155532 #31	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109 #34	ENSGT00940000156478
Characiphysae	ANCESTRAL SPECIES	29	ENSGT00940000154554.a.e	ENSGT00940000154554.a.f.a	ENSGT00940000156315.e.b	ENSGT00390000009630	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00390000011228.b.a.e.a	ENSGT00510000047967	ENSGT00940000155048.d.a.k	ENSGT00550000074884	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000155532 #31	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109.s.a #34	ENSGT00950000182835.d.a.k.a ##9	ENSGT00390000011648.b	ENSGT00940000157392.o.b	ENSGT00530000063868.a.b	ENSGT00940000158436
Channel catfish	MODERN SPECIES	13	tmem110 (ENSIPUG00000023613)	mustn1b (ENSIPUG00000023617)	itih3 (ENSIPUG00000023620)	GATA2 (ENSIPUG00000023627)	rpn1 (ENSIPUG00000023633)	pbrm1 (ENSIPUG00000023639)	gnl3 (ENSIPUG00000023677)	glt8d1 (ENSIPUG00000023689)	spcs1 (ENSIPUG00000023691)	CAMK1 (ENSIPUG00000023697)	ccdc3b (ENSIPUG00000023706)	si:ch211-236d3.4 (ENSIPUG00000023707)	fhit (ENSIPUG00000023729)	ptprg (ENSIPUG00000023735)	cse1l (ENSIPUG00000023752)	Bmp7 (ENSIPUG00000023773) #22	ENSIPUG00000023776 #24	taf4 (ENSIPUG00000023780) #25	cdh4 (ENSIPUG00000023783) #26	ENSIPUG00000023794 #27	ENSIPUG00000023797 #29	ENSIPUG00000023802 #29	ENSIPUG00000023813 #29	ENSIPUG00000023814 #29	dido1 (ENSIPUG00000023816) #31	ENSIPUG00000023819 #31	ZMYND8 (ENSIPUG00000023824) #32	NCOA3 (ENSIPUG00000023848) #33	id1 (ENSIPUG00000023852) #34	PFKFB2 (ENSIPUG00000023854) ##9	phtf1 (ENSIPUG00000023863)
Characiphysae_b	ANCESTRAL SPECIES	26	ENSGT00940000154554.a.e	ENSGT00940000154554.a.f.a	ENSGT00940000156315.e.b	ENSGT00390000009630	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00390000011228.b.a.e.a	ENSGT00510000047967	ENSGT00940000155048.d.a.k	ENSGT00550000074884	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000155532 #31	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109.s.a #34	ENSGT00950000182835.d.a.k.a ##9	ENSGT00390000011648.b	ENSGT00940000157392.o.b	ENSGT00530000063868.a.b	ENSGT00940000158436
Characoidei	ANCESTRAL SPECIES	15	ENSGT00940000154554.a.e	ENSGT00940000154554.a.f.a	ENSGT00940000156315.e.b	ENSGT00390000009630	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00390000011228.b.a.e.a	ENSGT00510000047967	ENSGT00940000155048.d.a.k	ENSGT00550000074884	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00390000011620.a.a.b.e #25	ENSGT00940000158073.b #26	ENSGT00940000160902.c.a #27	ENSGT00390000018730.A.f #29	ENSGT00940000154897.r #32	ENSGT00950000183021.a.b.d #33	ENSGT00940000161109.s.a #34	ENSGT00950000182835.d.a.k.a ##9	ENSGT00390000011648.b	ENSGT00940000157392.o.b	ENSGT00530000063868.a.b	ENSGT00940000158436	ENSGT00940000155241.d
Mexicana tetra	MODERN SPECIES	14	rpn1 (ENSAMXG00000017141)	PBRM1 (ENSAMXG00000017325)	gnl3 (ENSAMXG00000020880)	glt8d1 (ENSAMXG00000042559)	spcs1 (ENSAMXG00000017538)	nek4 (ENSAMXG00000031938)	CAMK1 (ENSAMXG00000017559)	zgc:194209 (ENSAMXG00000043132)	ENSAMXG00000042647	ccdc3b (ENSAMXG00000030925)	ENSAMXG00000042063	ENSAMXG00000037249	fhit (ENSAMXG00000016351)	ptprga (ENSAMXG00000016372)	cse1l (ENSAMXG00000016416)	bmp7a (ENSAMXG00000037549) #22	ENSAMXG00000041468 #23	ENSAMXG00000043601 #24	ENSAMXG00000016453 #25	cdh4 (ENSAMXG00000016470) #26	ENSAMXG00000030049 #27	ENSAMXG00000029646 #31	dido1 (ENSAMXG00000006865) #31	ZMYND8 (ENSAMXG00000006882) #32	NCOA3 (ENSAMXG00000006902) #33	id1 (ENSAMXG00000030460) #34	PFKFB2 (ENSAMXG00000032440) ##9	phtf1 (ENSAMXG00000006946)	cishb (ENSAMXG00000041177)	twf2b (ENSAMXG00000006961)	rpusd4 (ENSAMXG00000031479)
Red-bellied piranha	MODERN SPECIES	6	ENSPNAG00000002680	gata2a (ENSPNAG00000013264)	rpn1 (ENSPNAG00000002645)	PBRM1 (ENSPNAG00000013202)	gnl3 (ENSPNAG00000013096)	glt8d1 (ENSPNAG00000002547)	spcs1 (ENSPNAG00000013052)	nek4 (ENSPNAG00000013047)	CAMK1 (ENSPNAG00000002527)	ccdc3b (ENSPNAG00000012983)	FAM107A (ENSPNAG00000012967)	fhit (ENSPNAG00000002483)	ENSPNAG00000005241	ptprga (ENSPNAG00000012931)	cse1l (ENSPNAG00000012903)	bmp7a (ENSPNAG00000002424) #22	ENSPNAG00000002414 #23	ENSPNAG00000012810 #24	TAF4 (ENSPNAG00000012794) #25	cdh4 (ENSPNAG00000012744) #26	ENSPNAG00000002348	ENSPNAG00000002345 #27	ENSPNAG00000012633 #29	ENSPNAG00000002324 #29	ENSPNAG00000002320 #31	ENSPNAG00000012597 #31	ZMYND8 (ENSPNAG00000002300) #32	NCOA3 (ENSPNAG00000012470) #33	id1 (ENSPNAG00000002251) #34	PFKFB2 (ENSPNAG00000012439) ##9	phtf1 (ENSPNAG00000012360)
Electric eel	MODERN SPECIES	454																bmp7a (ENSEEEG00000011144) #22	ENSEEEG00000011317 #24	ENSEEEG00000011319 #25	cdh4 (ENSEEEG00000011323) #26	ENSEEEG00000011328 #27	ENSEEEG00000011332 #29	ENSEEEG00000011335 #31	ZMYND8 (ENSEEEG00000011372) #32
Cyprinoidei	ANCESTRAL SPECIES	134	ENSGT00940000156348.A	ENSGT01030000235287	ENSGT00940000158252	ENSGT00530000064273.a.a	ENSGT00940000164804.b	ENSGT00940000159915.b.i.a	ENSGT00530000063749.c.a	ENSGT00390000007991	ENSGT00940000161493	ENSGT00940000165051	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00940000156490.b.b #22	ENSGT00390000005939.a.b.b #23	ENSGT00940000165182.d #24	ENSGT00940000155218.A.c
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	245																ENSGT00940000156490.b.b.a #22	ENSGT00390000005939.a.b.b.a #23	ENSGT00940000165182.d.a #24	ENSGT00940000155218.A.c.d	ENSGT00940000161979.B.o.a.a	ENSGT00940000156194.m.b.b	ENSGT00940000159650.d	ENSGT00990000203541.a.a.b.h	ENSGT00940000155264.c.b	ENSGT00940000155325.b.b	ENSGT00940000162196.i	ENSGT00940000162229.b	ENSGT00940000155356.d.c	ENSGT00940000156173.e	ENSGT00940000156199.a.a.a	ENSGT00950000183160.C
Goldfish	MODERN SPECIES	29	palm1a (ENSCARG00000015331)	PLPPR3 (ENSCARG00000015347)	TMEM259 (ENSCARG00000015362)	GRIN3B (ENSCARG00000015384)	mob3c (ENSCARG00000015392)	mknk1 (ENSCARG00000015410)	atp5f1b (ENSCARG00000015426)	ABCB11 (ENSCARG00000015711)	MAST3 (ENSCARG00000024830)	ENSCARG00000025188	homer3b (ENSCARG00000025222)	ENSCARG00000025334	arrdc2 (ENSCARG00000025352)	si:ch211-1a19.2 (ENSCARG00000025367)	ENSCARG00000025376	bmp7a (ENSCARG00000025395) #22	ENSCARG00000025423 #23	ENSCARG00000025426 #24	ENSCARG00000025434	ENSCARG00000025474	cpne5b (ENSCARG00000025486)	ENSCARG00000025543	KIF21B (ENSCARG00000025853)	LHFPL5 (ENSCARG00000035300)	ENSCARG00000035307	srpk1b (ENSCARG00000035379)	MAPK14 (ENSCARG00000039790)	tmem167b (ENSCARG00000040215)	b3galt6 (ENSCARG00000040228)	HIPK1 (ENSCARG00000040263)	acap3b (ENSCARG00000040891)
Cyprininae_a	ANCESTRAL SPECIES	161	ENSGT00940000168875.b	ENSGT00940000159078.e	ENSGT00940000156348.A.a	ENSGT01030000235287.c	ENSGT00940000158252.b	ENSGT00530000064273.a.a.e	ENSGT00940000164804.b.l	ENSGT00940000159915.b.i.a.a	ENSGT00530000063749.c.a.a	ENSGT00390000007991	ENSGT00940000161493.g	ENSGT00940000166794.e	ENSGT00950000183171.A.b.a.b.d	ENSGT00390000018845.f.c	ENSGT00390000014626.j	ENSGT00940000156490.b.b.a #22	ENSGT00390000005939.a.b.b.a #23	ENSGT00940000155218.A.c.d	ENSGT00940000161979.B.o.a.a	ENSGT00940000156194.m.b.b	ENSGT00940000159650.d	ENSGT00990000203541.a.a.b.h	ENSGT00940000155264.c.b	ENSGT00940000155325.b.b	ENSGT00940000155325.a.b.b	ENSGT00940000162196.i	ENSGT00940000162229.b	ENSGT00940000155356.d.c	ENSGT00940000156199.a.a.a	ENSGT00950000183160.C	ENSGT00940000154417.d.a.a
Common carp reference	MODERN SPECIES	42	ttll7 (ENSCCRG00000042479)	ENSCCRG00000039108	ADGRL2 (ENSCCRG00000028630)	adgrl4 (ENSCCRG00000065300)	vtg3 (ENSCCRG00000044342)	ENSCCRG00000044317	diras1a (ENSCCRG00000046712)	ENSCCRG00000065365	ENSCCRG00000044293	reep6 (ENSCCRG00000044287)	zgc:113223 (ENSCCRG00000044279)	ENSCCRG00000044251	thop1 (ENSCCRG00000042147)	tmem38a (ENSCCRG00000042012)	smim7 (ENSCCRG00000042090)	bmp7a (ENSCCRG00000042070) #22	ENSCCRG00000060508 #23	ENSCCRG00000005823	ENSCCRG00000005814	cpne5b (ENSCCRG00000053915)	ENSCCRG00000010692	ENSCCRG00000013172	srpk1b (ENSCCRG00000013174)	ENSCCRG00000049289	b3galt6 (ENSCCRG00000072978)	ENSCCRG00000052293	UBE2J2 (ENSCCRG00000037899)	ACAP3 (ENSCCRG00000051977)	ENSCCRG00000044703	ddx19b (ENSCCRG00000030855)	PUSL1 (ENSCCRG00000030849)
Golden-line barbel	MODERN SPECIES	153	prkacba (ENSSGRG00000050152)	ttll7 (ENSSGRG00000050247)	ADGRL2 (ENSSGRG00000050269)	ENSSGRG00000050279	adgrl4 (ENSSGRG00000050288)	vtg3 (ENSSGRG00000050298)	ENSSGRG00000050300	diras1a (ENSSGRG00000050301)	APC2 (ENSSGRG00000050308)	ENSSGRG00000050312	reep6 (ENSSGRG00000050313)	ENSSGRG00000050315	thop1 (ENSSGRG00000050347)	tmem38a (ENSSGRG00000050842)	smim7 (ENSSGRG00000050843)	bmp7a (ENSSGRG00000050846) #22	ENSSGRG00000050847 #24	ENSSGRG00000050848	cpne5b (ENSSGRG00000050850)	KIF21B (ENSSGRG00000050852)	ENSSGRG00000051144	srpk1b (ENSSGRG00000051146)	MAPK14 (ENSSGRG00000051183)	tmem167b (ENSSGRG00000051184)	b3galt6 (ENSSGRG00000051185)	acap3b (ENSSGRG00000051187)
Cyprininae	ANCESTRAL SPECIES	230	ENSGT00940000168875.a	ENSGT00940000159078.f	ENSGT00940000156348.A.b	ENSGT01030000235287.d	ENSGT00940000158252.a	ENSGT00940000164804.b.k	ENSGT00940000159915.b.i.a.b	ENSGT00530000063749.c.a.b	ENSGT00940000161493.h	ENSGT00940000165051	ENSGT00940000166794.f	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b.c	ENSGT00390000018845.f.d	ENSGT00390000014626.i	ENSGT00940000156490.b.b.b #22	ENSGT00390000005939.a.b.b.b #23	ENSGT00940000165182.d.b #24	ENSGT00940000155218.A.c.c	ENSGT00940000156194.m.b.a	ENSGT00940000159650.c	ENSGT00940000155264.c.a	ENSGT00940000155325.b.a	ENSGT00940000162196.j	ENSGT00390000011228.a.b	ENSGT00940000162229.a	ENSGT00940000155356.d.d	ENSGT00940000156199.a.a.b	ENSGT00390000004940.a.b.j.b.b	ENSGT01050000244971.B.a.b	ENSGT01050000244971.A.d.a.a.f
Cyprininae_a	ANCESTRAL SPECIES	208	ENSGT00530000063936.b.m	ENSGT00940000168875.a	ENSGT00940000159078.f	ENSGT00940000156348.A.b	ENSGT01030000235287.d	ENSGT00940000158252.a	ENSGT00940000164804.b.k	ENSGT00940000159915.b.i.a.b	ENSGT00530000063749.c.a.b	ENSGT00940000161493.h	ENSGT00940000165051	ENSGT00940000166794.f	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b.c	ENSGT00390000014626.i	ENSGT00940000156490.b.b.b #22	ENSGT00390000005939.a.b.b.b #23	ENSGT00940000165182.d.b #24	ENSGT00940000155218.A.c.c	ENSGT00940000156194.m.b.a	ENSGT00940000159650.c	ENSGT00940000155264.d	ENSGT00940000155325.a.b.a	ENSGT00940000155325.a.a.a.a.a	ENSGT00940000162196.j	ENSGT00390000011228.a.b	ENSGT00940000162229.a	ENSGT00940000155356.d.d	ENSGT00940000156173.e	ENSGT00940000156199.a.a.b	ENSGT00390000004940.a.b.j.b.b
Golden-line barbel	MODERN SPECIES	1207												ENSSGRG00000018353	ENSSGRG00000018352	thop1 (ENSSGRG00000018246)	smim7 (ENSSGRG00000018238)	bmp7a (ENSSGRG00000018237) #22	ENSSGRG00000018236 #23	ENSSGRG00000018235 #24	ENSSGRG00000018232	ENSSGRG00000018231	ENSSGRG00000018230
Common carp reference	MODERN SPECIES	13	ENSCCRG00000022960	samd13 (ENSCCRG00000023124)	prkacba (ENSCCRG00000023134)	ttll7 (ENSCCRG00000032807)	ENSCCRG00000058031	ADGRL2 (ENSCCRG00000047336)	adgrl4 (ENSCCRG00000047306)	ENSCCRG00000046720	diras1a (ENSCCRG00000066953)	ENSCCRG00000056253	ENSCCRG00000066762	reep6 (ENSCCRG00000055085)	zgc:113223 (ENSCCRG00000004333)	ENSCCRG00000059765	thop1 (ENSCCRG00000081203)	bmp7a (ENSCCRG00000029298) #22	ENSCCRG00000029292 #23	ENSCCRG00000070886 #24	ENSCCRG00000009671	cpne5b (ENSCCRG00000005799)	ENSCCRG00000066820	ENSCCRG00000030984	srpk1b (ENSCCRG00000025390)	ENSCCRG00000025260	ENSCCRG00000071443	b3galt6 (ENSCCRG00000064382)	ENSCCRG00000060920	ENSCCRG00000047296	ENSCCRG00000047110	ddx19b (ENSCCRG00000047062)	ENSCCRG00000063506
Goldfish	MODERN SPECIES	2461	prkacba (ENSCARG00000047912)	ttll7 (ENSCARG00000048345)	ENSCARG00000050814	ENSCARG00000050819	ADGRL2 (ENSCARG00000050906)	ENSCARG00000054905	adgrl4 (ENSCARG00000054924)	ENSCARG00000054951	diras1a (ENSCARG00000054967)	APC2 (ENSCARG00000054971)	reep6 (ENSCARG00000054984)	zgc:113223 (ENSCARG00000055018)	thop1 (ENSCARG00000055326)	tmem38a (ENSCARG00000062591)	smim7 (ENSCARG00000062612)	bmp7a (ENSCARG00000062631) #22	ENSCARG00000062660 #23	ENSCARG00000062666 #24	ENSCARG00000062673	cpne5b (ENSCARG00000062732)	KIF21B (ENSCARG00000063454)	srpk1b (ENSCARG00000063704)	MAPK14 (ENSCARG00000063961)	tmem167b (ENSCARG00000064379)	ENSCARG00000064390	b3galt6 (ENSCARG00000064400)	HIPK1 (ENSCARG00000064409)	acap3b (ENSCARG00000064560)	ddx19b (ENSCARG00000065318)	ENSCARG00000065544	ENSCARG00000065551
Zebrafish	MODERN SPECIES	2	prkacba (ENSDARG00000001782)	ttll7 (ENSDARG00000062973)	ADGRL2 (ENSDARG00000069356)	adgrl4 (ENSDARG00000013653)	vtg3 (ENSDARG00000016448)	ENSDARG00000075629	diras1a (ENSDARG00000028066)	APC2 (ENSDARG00000063007)	ENSDARG00000103619	reep6 (ENSDARG00000087349)	zgc:113223 (ENSDARG00000090253)	ENSDARG00000076110	thop1 (ENSDARG00000013776)	tmem38a (ENSDARG00000024047)	smim7 (ENSDARG00000074848)	bmp7a (ENSDARG00000018260) #22	ENSDARG00000074904 #24	ENSDARG00000055093	zgc:173548 (ENSDARG00000070048)	si:ch211-253b8.2 (ENSDARG00000089230)	comp (ENSDARG00000098431)	ENSDARG00000076076	klhl26 (ENSDARG00000053876)	ddx49 (ENSDARG00000012899)	lsm4 (ENSDARG00000023852)	rab3ab (ENSDARG00000043835)	ENSDARG00000002411	ENSDARG00000095559	gadd45ba (ENSDARG00000027744)	larp6b (ENSDARG00000003968)	VMAC (ENSDARG00000110997)