Hystricomorpha	ANCESTRAL SPECIES	33	ENSGT00950000183050.b.a	ENSGT00390000013544 #7	ENSGT00940000155014 #8	ENSGT00390000012837 #9	ENSGT00390000006191 #10	ENSGT00390000005665 #11	ENSGT00390000001071 #12	ENSGT00390000008727.a.b #13	ENSGT00390000012816	ENSGT00910000144250 #14	ENSGT00550000074912 #15	ENSGT00940000156159 #17	ENSGT00940000160102.p ##19	ENSGT00390000012397	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277	ENSGT00940000155077.e.a #25	ENSGT00940000155077.e.b ##25	ENSGT00940000158583	ENSGT00940000156899	ENSGT00940000155226.q.a.d	ENSGT00940000154832.m.a	ENSGT00390000010439	ENSGT00940000160091	ENSGT00940000156487	ENSGT00940000160820	ENSGT00390000002319
Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00950000183050.b.a	ENSGT00390000013544 #7	ENSGT00940000155014 #8	ENSGT00390000012837 #9	ENSGT00390000006191 #10	ENSGT00390000005665 #11	ENSGT00390000001071 #12	ENSGT00390000008727.a.b #13	ENSGT00390000012816	ENSGT00910000144250 #14	ENSGT00550000074912 #15	ENSGT00940000156159 #17	ENSGT00940000160102.p ##19	ENSGT00390000012397	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277	ENSGT00940000155077.e.a #25	ENSGT00940000158237 #31	ENSGT00940000159561 #34	ENSGT00390000011854 #35	ENSGT00530000064222.b
Hystricomorpha_b	ANCESTRAL SPECIES	46	ENSGT00950000183050.b.a	ENSGT00390000013544 #7	ENSGT00940000155014 #8	ENSGT00390000012837 #9	ENSGT00390000006191 #10	ENSGT00390000005665 #11	ENSGT00390000001071 #12	ENSGT00390000008727.a.b #13	ENSGT00390000012816	ENSGT00910000144250 #14	ENSGT00550000074912 #15	ENSGT00940000156159 #17	ENSGT00940000160102.o.a #19	ENSGT00390000012397	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277	ENSGT00940000155077.e.a #25	ENSGT00940000158237 #31	ENSGT00940000159561 #34	ENSGT00390000011854 #35	ENSGT00530000064222.b	ENSGT00940000161472	ENSGT00390000017666.p #37	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944	ENSGT00940000157159
Degu	MODERN SPECIES	48	TMEM260 (ENSODEG00000014526) #7	OTX2 (ENSODEG00000016325) #8	ENSODEG00000014704 #9	AP5M1 (ENSODEG00000014310) #10	NAA30 (ENSODEG00000014442) #11	CCDC198 (ENSODEG00000015422) #12	SLC35F4 (ENSODEG00000014001) #13	ENSODEG00000014617 #14	ENSODEG00000014244 #15	ENSODEG00000014881 #16	ENSODEG00000014309 #17	ENSODEG00000014880 #18	ENSODEG00000014925 #19	DACT1 (ENSODEG00000014574) #20	ENSODEG00000015435 #21	DAAM1 (ENSODEG00000014128) #22	L3HYPDH (ENSODEG00000015887) #23	JKAMP (ENSODEG00000014669) #24	ENSODEG00000014803 #25	ENSODEG00000014970 #26	ENSODEG00000020245 #27	ENSODEG00000020257 #28	ENSODEG00000015513 #29	ENSODEG00000014407 #30	KTN1 (ENSODEG00000015972) #31	ENSODEG00000020182 #32	ENSODEG00000020193 #33	TBPL2 (ENSODEG00000015283) #34	ATG14 (ENSODEG00000014397) #35	ENSODEG00000014741 #36	ENSODEG00000014683 #37
Long-tailed chinchilla	MODERN SPECIES	173	ENSCLAG00000004270	OTX2 (ENSCLAG00000004839) #8	EXOC5 (ENSCLAG00000005217) #9	AP5M1 (ENSCLAG00000006373) #10	NAA30 (ENSCLAG00000002822) #11	CCDC198 (ENSCLAG00000002962) #12	SLC35F4 (ENSCLAG00000003156) #13	ARMH4 (ENSCLAG00000003534)	ACTR10 (ENSCLAG00000003957) #14	PSMA3 (ENSCLAG00000004169) #15	ENSCLAG00000003914 #17	TIMM9 (ENSCLAG00000004069) #19	KIAA0586 (ENSCLAG00000004355)	ENSCLAG00000005082	DACT1 (ENSCLAG00000005231) #20	DAAM1 (ENSCLAG00000005812) #22	GPR135 (ENSCLAG00000003808)	L3HYPDH (ENSCLAG00000003825) #23	JKAMP (ENSCLAG00000004418) #24	CCDC175 (ENSCLAG00000004873)	ENSCLAG00000005327 #25	ENSCLAG00000004233	KTN1 (ENSCLAG00000004903) #31	ENSCLAG00000007765	TBPL2 (ENSCLAG00000013407) #34	ATG14 (ENSCLAG00000010991) #35	FBXO34 (ENSCLAG00000018001)
Guinea pig	MODERN SPECIES	20	ENSCPOG00000023496	PELI2 (ENSCPOG00000040104)	TMEM260 (ENSCPOG00000005778) #7	OTX2 (ENSCPOG00000003420) #8	EXOC5 (ENSCPOG00000011745) #9	AP5M1 (ENSCPOG00000003004) #10	CCDC198 (ENSCPOG00000003345) #12	SLC35F4 (ENSCPOG00000011150) #13	ACTR10 (ENSCPOG00000008553) #14	PSMA3 (ENSCPOG00000006114) #15	ENSCPOG00000032725 #17	ENSCPOG00000009290 #17	TIMM9 (ENSCPOG00000035363) ##19	KIAA0586 (ENSCPOG00000001244)	DACT1 (ENSCPOG00000039410) #20	DAAM1 (ENSCPOG00000013581) #22	L3HYPDH (ENSCPOG00000014476) #23	JKAMP (ENSCPOG00000014480) #24	ENSCPOG00000007411 #25	KTN1 (ENSCPOG00000014763) #31	TBPL2 (ENSCPOG00000006151) #34	ATG14 (ENSCPOG00000001010) #35	FBXO34 (ENSCPOG00000032685)
Naked mole-rat female	MODERN SPECIES	18	SLC35F4 (ENSHGLG00000002649) #13	ENSHGLG00000046462	ARMH4 (ENSHGLG00000002733)	ACTR10 (ENSHGLG00000002598) #14	ENSHGLG00000037877	ENSHGLG00000009085 #15	ENSHGLG00000036546	ARID4A (ENSHGLG00000001903) #17	ENSHGLG00000034425	ENSHGLG00000002378	ENSHGLG00000042053	KIAA0586 (ENSHGLG00000003054)	ENSHGLG00000037363	DACT1 (ENSHGLG00000001348) #20	ENSHGLG00000003874	DAAM1 (ENSHGLG00000009999) #22	GPR135 (ENSHGLG00000017696)	L3HYPDH (ENSHGLG00000014479) #23	JKAMP (ENSHGLG00000016840) #24	ENSHGLG00000036500	RTN1 (ENSHGLG00000011293) #25	ENSHGLG00000034621	ENSHGLG00000044183 ##25	ENSHGLG00000014070	PCNX4 (ENSHGLG00000011665)	ENSHGLG00000014306	ENSHGLG00000042703	PPM1A (ENSHGLG00000012982)	ENSHGLG00000010109	SIX6 (ENSHGLG00000009630)	SIX1 (ENSHGLG00000042472)