Chordata	ANCESTRAL SPECIES																	ENSGT00940000156452 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000156452 #22
Gnathostomata	ANCESTRAL SPECIES	2	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.d ##17	ENSGT00940000160102	ENSGT00940000162596	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00390000013814	ENSGT00390000012948.b	ENSGT00730000111160	ENSGT00950000182767.b.a.a	ENSGT00390000017718	ENSGT00390000016736.a	ENSGT00940000155583	ENSGT00390000002201	ENSGT00550000074807.d	ENSGT00940000162391	ENSGT00950000183139.B
Euteleostomi	ANCESTRAL SPECIES	18	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00940000162596	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00390000013814	ENSGT00390000012948.b	ENSGT00730000111160	ENSGT00950000182767.b.a.a	ENSGT00390000017718	ENSGT00940000158296	ENSGT00390000016736.a	ENSGT00940000155583	ENSGT00390000002201	ENSGT00550000074807.d	ENSGT00940000163080
Sarcopterygii	ANCESTRAL SPECIES	7	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00940000162596	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Tetrapoda	ANCESTRAL SPECIES	23	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Amniota	ANCESTRAL SPECIES	8	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Mammalia	ANCESTRAL SPECIES	26	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Theria	ANCESTRAL SPECIES	14	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Eutheria	ANCESTRAL SPECIES	12	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Primates	ANCESTRAL SPECIES	2	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00390000004745	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.i.b ##14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00940000163252.d	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.i.b ##14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00940000163252.d	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.i.b ##14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00940000163252.d	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00390000005569.x.a.b.b.a.b.a #27	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.j #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00390000005569.x.a.b.b.a.b.a #27	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.j #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT01100000263539.b.a.a.a.a.a.b.a.b.a.a.b #18	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT01100000263539.b.b.b.b.b.a.b.b #21	ENSGT00940000156452 #22	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00390000005569.x.a.b.b.a.b.a #27	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Rhesus	MODERN SPECIES	17	EXOC5 (ENSMMUG00000018278) #7	AP5M1 (ENSMMUG00000018279) #8	NAA30 (ENSMMUG00000021311) #9	CCDC198 (ENSMMUG00000040110) #10	SLC35F4 (ENSMMUG00000007646) #11	ARMH4 (ENSMMUG00000002121) #12	ACTR10 (ENSMMUG00000003508) #13	PSMA3 (ENSMMUG00000003509) #14	ARID4A (ENSMMUG00000003514) #15	ENSMMUG00000058671 #16	TOMM20L (ENSMMUG00000055678) #17	ENSMMUG00000049718 #18	KIAA0586 (ENSMMUG00000001084) #19	DACT1 (ENSMMUG00000001090) #20	ENSMMUG00000059927 #21	DAAM1 (ENSMMUG00000021070) #22	L3HYPDH (ENSMMUG00000008717) #23	JKAMP (ENSMMUG00000008715) #24	CCDC175 (ENSMMUG00000011965) #25	RTN1 (ENSMMUG00000011966) #26	ENSMMUG00000029338 #27	LRRC9 (ENSMMUG00000004854) #28	PCNX4 (ENSMMUG00000015443) #29	DHRS7 (ENSMMUG00000002540) #30	PPM1A (ENSMMUG00000010464) #31	C7H14orf39 (ENSMMUG00000002828) #32	SIX6 (ENSMMUG00000055613) #33	SIX1 (ENSMMUG00000058852) #34	SIX4 (ENSMMUG00000001640) #35	MNAT1 (ENSMMUG00000001642) #36	TRMT5 (ENSMMUG00000013611) #37
Crab-eating macaque	MODERN SPECIES	17	AP5M1 (ENSMFAG00000036074) #8	NAA30 (ENSMFAG00000038073) #9	CCDC198 (ENSMFAG00000044693) #10	SLC35F4 (ENSMFAG00000001572) #11	ARMH4 (ENSMFAG00000038183) #12	ACTR10 (ENSMFAG00000012469) #13	ENSMFAG00000002833 #14	ARID4A (ENSMFAG00000037044) #15	TOMM20L (ENSMFAG00000036395) #17	ENSMFAG00000002017 #18	KIAA0586 (ENSMFAG00000041990) #19	ENSMFAG00000063651 ##21	DACT1 (ENSMFAG00000057175) #20	ENSMFAG00000058398	ENSMFAG00000057070 #21	DAAM1 (ENSMFAG00000030743) #22	L3HYPDH (ENSMFAG00000037589) #23	JKAMP (ENSMFAG00000001385) #24	CCDC175 (ENSMFAG00000043449) #25	ENSMFAG00000031365 ##26	ENSMFAG00000035715 #27	LRRC9 (ENSMFAG00000041739) #28	PCNX4 (ENSMFAG00000032543) #29	DHRS7 (ENSMFAG00000031332) #30	PPM1A (ENSMFAG00000001498) #31	C14orf39 (ENSMFAG00000040949) #32	SIX6 (ENSMFAG00000038361) #33	SIX1 (ENSMFAG00000048802) #34	SIX4 (ENSMFAG00000041852) #35	SLC38A6 (ENSMFAG00000000901)	TRMT5 (ENSMFAG00000002940) #37
Pig-tailed macaque	MODERN SPECIES	520	OTX2 (ENSMNEG00000043694)	EXOC5 (ENSMNEG00000044093) #7	AP5M1 (ENSMNEG00000030435) #8	NAA30 (ENSMNEG00000039048) #9	CCDC198 (ENSMNEG00000034304) #10	SLC35F4 (ENSMNEG00000034879) #11	ARMH4 (ENSMNEG00000044040) #12	ACTR10 (ENSMNEG00000031228) #13	PSMA3 (ENSMNEG00000035144) ##14	ARID4A (ENSMNEG00000037476) #15	TOMM20L (ENSMNEG00000034572) #17	TIMM9 (ENSMNEG00000039326)	KIAA0586 (ENSMNEG00000029338) #19	DACT1 (ENSMNEG00000029558) #20	ENSMNEG00000013460	DAAM1 (ENSMNEG00000022401) #22	L3HYPDH (ENSMNEG00000040276) #23	JKAMP (ENSMNEG00000044876) #24	CCDC175 (ENSMNEG00000035042) #25	RTN1 (ENSMNEG00000029694) #26	ENSMNEG00000013897 #27	LRRC9 (ENSMNEG00000044254) #28	PCNX4 (ENSMNEG00000042532) #29	DHRS7 (ENSMNEG00000033351) #30	PPM1A (ENSMNEG00000042778) #31	C14orf39 (ENSMNEG00000013292) #32	SIX6 (ENSMNEG00000036336) #33	SIX1 (ENSMNEG00000038756) #34	SIX4 (ENSMNEG00000002832) #35	MNAT1 (ENSMNEG00000031605) #36	TRMT5 (ENSMNEG00000000131) #37
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.i.b ##14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00940000163252.d	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00390000005569.x.a.b.b.a.b.a #27	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Olive baboon	MODERN SPECIES	17	ENSPANG00000037169	NAA30 (ENSPANG00000024264) #9	CCDC198 (ENSPANG00000022393) #10	SLC35F4 (ENSPANG00000004316) #11	ENSPANG00000041550	ACTR10 (ENSPANG00000013445) #13	ENSPANG00000007163 ##14	ARMH4 (ENSPANG00000016609) #12	ARID4A (ENSPANG00000022390) #15	TOMM20L (ENSPANG00000018090) #17	TIMM9 (ENSPANG00000020778)	KIAA0586 (ENSPANG00000018663) #19	ENSPANG00000048595 ##16	DACT1 (ENSPANG00000004888) #20	ENSPANG00000046553	DAAM1 (ENSPANG00000009285) #22	L3HYPDH (ENSPANG00000018436) #23	JKAMP (ENSPANG00000035482) #24	CCDC175 (ENSPANG00000018662) #25	ENSPANG00000038782 #27	RTN1 (ENSPANG00000015147) #26	LRRC9 (ENSPANG00000020908) #28	DHRS7 (ENSPANG00000021242) #30	PCNX4 (ENSPANG00000007523) #29	PPM1A (ENSPANG00000007522) #31	C14orf39 (ENSPANG00000016606) #32	SIX6 (ENSPANG00000041831) #33	SIX1 (ENSPANG00000049749) #34	SIX4 (ENSPANG00000020970) #35	TRMT5 (ENSPANG00000016605) #37	SLC38A6 (ENSPANG00000021510)
Cercopithecinae_d	ANCESTRAL SPECIES	28	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.i.b ##14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00940000163252.d	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00550000074801.h.c.b.b	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Sooty mangabey	MODERN SPECIES	659	ENSCATG00000039283	AP5M1 (ENSCATG00000044165) #8	NAA30 (ENSCATG00000013934) #9	CCDC198 (ENSCATG00000004038) #10	SLC35F4 (ENSCATG00000009372) #11	ARMH4 (ENSCATG00000040941) #12	ACTR10 (ENSCATG00000031164) #13	PSMA3 (ENSCATG00000039369) ##14	ARID4A (ENSCATG00000041635) #15	TOMM20L (ENSCATG00000030084) #17	TIMM9 (ENSCATG00000043351)	KIAA0586 (ENSCATG00000030156) #19	ENSCATG00000039885	DACT1 (ENSCATG00000031549) #20	ENSCATG00000043194	DAAM1 (ENSCATG00000033906) #22	GPR135 (ENSCATG00000010909)	L3HYPDH (ENSCATG00000032893) #23	JKAMP (ENSCATG00000039039) #24	CCDC175 (ENSCATG00000032497) #25	RTN1 (ENSCATG00000038947) #26	LRRC9 (ENSCATG00000032425) #28	PCNX4 (ENSCATG00000043654) #29	DHRS7 (ENSCATG00000029538) #30	PPM1A (ENSCATG00000038430) #31	ENSCATG00000039628	C14orf39 (ENSCATG00000041613) #32	SIX6 (ENSCATG00000037533) #33	SIX1 (ENSCATG00000041483) #34	SIX4 (ENSCATG00000040466) #35	MNAT1 (ENSCATG00000030975) #36
Drill	MODERN SPECIES	1015	EXOC5 (ENSMLEG00000040551) #7	AP5M1 (ENSMLEG00000033403) #8	NAA30 (ENSMLEG00000037545) #9	CCDC198 (ENSMLEG00000033090) #10	SLC35F4 (ENSMLEG00000043669) #11	ARMH4 (ENSMLEG00000032945) #12	ACTR10 (ENSMLEG00000029781) #13	PSMA3 (ENSMLEG00000041984) ##14	ARID4A (ENSMLEG00000043095) #15	TOMM20L (ENSMLEG00000036424) #17	ENSMLEG00000042516	ENSMLEG00000044131	KIAA0586 (ENSMLEG00000040931) #19	DACT1 (ENSMLEG00000040877) #20	ENSMLEG00000037984	DAAM1 (ENSMLEG00000040046) #22	GPR135 (ENSMLEG00000027679)	L3HYPDH (ENSMLEG00000031040) #23	JKAMP (ENSMLEG00000027459) #24	CCDC175 (ENSMLEG00000031273) #25	RTN1 (ENSMLEG00000043571) #26
Vervet Monkey	MODERN SPECIES	16	EXOC5 (ENSCSAG00000014529) #7	AP5M1 (ENSCSAG00000014515) #8	NAA30 (ENSCSAG00000014509) #9	CCDC198 (ENSCSAG00000014503) #10	SLC35F4 (ENSCSAG00000014489) #11	ARMH4 (ENSCSAG00000014459) #12	ACTR10 (ENSCSAG00000014447) #13	PSMA3 (ENSCSAG00000014435) ##14	ENSCSAG00000019412	ARID4A (ENSCSAG00000014425) #15	ENSCSAG00000014416	TOMM20L (ENSCSAG00000014402) #17	ENSCSAG00000014391	KIAA0586 (ENSCSAG00000014385) #19	DACT1 (ENSCSAG00000014335) #20	DAAM1 (ENSCSAG00000014331) #22	GPR135 (ENSCSAG00000019413)	L3HYPDH (ENSCSAG00000014314) #23	JKAMP (ENSCSAG00000014311) #24	CCDC175 (ENSCSAG00000014299) #25	ENSCSAG00000014263 ##26	ENSCSAG00000014252 ##26	LRRC9 (ENSCSAG00000014241) #28	PCNX4 (ENSCSAG00000014213) #29	DHRS7 (ENSCSAG00000014204) #30	PPM1A (ENSCSAG00000014198) #31	C14orf39 (ENSCSAG00000014189) #32	SIX6 (ENSCSAG00000014178) #33	SIX1 (ENSCSAG00000014174) #34	SIX4 (ENSCSAG00000014171) #35	MNAT1 (ENSCSAG00000014164) #36
Rhinopithecus	ANCESTRAL SPECIES	105	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.j #14	ENSGT00550000074912.i.a ##14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000006293.ed.b	ENSGT00390000012397 #19	ENSGT00940000163252.d	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Golden snub-nosed monkey	MODERN SPECIES	1914																DAAM1 (ENSRROG00000045118) #22
Black snub-nosed monkey	MODERN SPECIES	2811												NUP210 (ENSRBIG00000025156)	IQSEC1 (ENSRBIG00000031968)	DACT1 (ENSRBIG00000029351) #20	ENSRBIG00000033469	DAAM1 (ENSRBIG00000031059) #22	GPR135 (ENSRBIG00000037764)	L3HYPDH (ENSRBIG00000032537) #23	JKAMP (ENSRBIG00000025261) #24	CCDC175 (ENSRBIG00000034655) #25	ENSRBIG00000037415 ##26
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00390000004745	ENSGT00390000012837.e #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Hominidae	ANCESTRAL SPECIES	14	ENSGT00390000004745	ENSGT00390000012837.e #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00390000004745	ENSGT00390000012837.e #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00390000004745	ENSGT00390000012837.e #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Pan	ANCESTRAL SPECIES	8	ENSGT00390000004745	ENSGT00390000012837.e #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00390000012062.n	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Chimpanzee	MODERN SPECIES	5	EXOC5 (ENSPTRG00000023297) #7	ENSPTRG00000052098	AP5M1 (ENSPTRG00000006384) #8	NAA30 (ENSPTRG00000006385) #9	CCDC198 (ENSPTRG00000006386) #10	SLC35F4 (ENSPTRG00000006387) #11	ARMH4 (ENSPTRG00000006388) #12	ACTR10 (ENSPTRG00000006389) #13	PSMA3 (ENSPTRG00000006390) #14	ARID4A (ENSPTRG00000006393) #15	TOMM20L (ENSPTRG00000024265) #17	TIMM9 (ENSPTRG00000006394)	KIAA0586 (ENSPTRG00000006395) #19	DACT1 (ENSPTRG00000006397) #20	ENSPTRG00000049547	DAAM1 (ENSPTRG00000006398) #22	GPR135 (ENSPTRG00000052380)	L3HYPDH (ENSPTRG00000006399) #23	CCDC175 (ENSPTRG00000006401) #25	JKAMP (ENSPTRG00000006400) #24	RTN1 (ENSPTRG00000006402) #26	LRRC9 (ENSPTRG00000045558) #28	PCNX4 (ENSPTRG00000006405) #29	DHRS7 (ENSPTRG00000006406) #30	ENSPTRG00000048791	ENSPTRG00000046575	PPM1A (ENSPTRG00000006407) #31	C14H14orf39 (ENSPTRG00000006408) #32	SIX6 (ENSPTRG00000006409) #33	SIX1 (ENSPTRG00000049394) #34	SIX4 (ENSPTRG00000006411) #35
Bonobo	MODERN SPECIES	5	ENSPPAG00000033104	EXOC5 (ENSPPAG00000035633) #7	AP5M1 (ENSPPAG00000040615) #8	ENSPPAG00000039070 #9	CCDC198 (ENSPPAG00000035537) #10	SLC35F4 (ENSPPAG00000031826) #11	ARMH4 (ENSPPAG00000040474) #12	ACTR10 (ENSPPAG00000038910) #13	PSMA3 (ENSPPAG00000035468) #14	ARID4A (ENSPPAG00000042713) #15	TOMM20L (ENSPPAG00000043904) #17	TIMM9 (ENSPPAG00000028624)	KIAA0586 (ENSPPAG00000035450) #19	DACT1 (ENSPPAG00000034602) #20	ENSPPAG00000032063	DAAM1 (ENSPPAG00000030494) #22	GPR135 (ENSPPAG00000036264)	L3HYPDH (ENSPPAG00000039237) #23	JKAMP (ENSPPAG00000038556) #24	CCDC175 (ENSPPAG00000039911) #25	ENSPPAG00000040880 ##26	ENSPPAG00000030154 ##26	LRRC9 (ENSPPAG00000028312) #28	PCNX4 (ENSPPAG00000031111) #29	DHRS7 (ENSPPAG00000025681) #30	ENSPPAG00000032426	PPM1A (ENSPPAG00000035582) #31	C14orf39 (ENSPPAG00000034713) #32	SIX6 (ENSPPAG00000043989) #33	SIX1 (ENSPPAG00000039623) #34	SIX4 (ENSPPAG00000030345) #35
Human	MODERN SPECIES	5	TMEM260 (ENSG00000070269)	OTX2 (ENSG00000165588)	EXOC5 (ENSG00000070367) #7	AP5M1 (ENSG00000053770) #8	NAA30 (ENSG00000139977) #9	CCDC198 (ENSG00000100557) #10	SLC35F4 (ENSG00000151812) #11	ARMH4 (ENSG00000139971) #12	ACTR10 (ENSG00000131966) #13	PSMA3 (ENSG00000100567) #14	ARID4A (ENSG00000032219) #15	TOMM20L (ENSG00000196860) #17	TIMM9 (ENSG00000100575)	KIAA0586 (ENSG00000100578) #19	DACT1 (ENSG00000165617) #20	DAAM1 (ENSG00000100592) #22	GPR135 (ENSG00000181619)	L3HYPDH (ENSG00000126790) #23	JKAMP (ENSG00000050130) #24	CCDC175 (ENSG00000151838) #25	RTN1 (ENSG00000139970) #26	LRRC9 (ENSG00000131951) #28	PCNX4 (ENSG00000126773) #29	DHRS7 (ENSG00000100612) #30	PPM1A (ENSG00000100614) #31	C14orf39 (ENSG00000179008) #32	SIX6 (ENSG00000184302) #33	SIX1 (ENSG00000126778) #34	SIX4 (ENSG00000100625) #35	MNAT1 (ENSG00000020426) #36	TRMT5 (ENSG00000126814) #37
Gorilla	MODERN SPECIES	5	OTX2 (ENSGGOG00000004038)	ENSGGOG00000025246	ENSGGOG00000023022 #7	AP5M1 (ENSGGOG00000005710) #8	CCDC198 (ENSGGOG00000022506) #10	SLC35F4 (ENSGGOG00000015232) #11	ARMH4 (ENSGGOG00000012037) #12	ACTR10 (ENSGGOG00000006866) #13	PSMA3 (ENSGGOG00000015814) #14	ARID4A (ENSGGOG00000027092) #15	TOMM20L (ENSGGOG00000001739) #17	TIMM9 (ENSGGOG00000037703)	KIAA0586 (ENSGGOG00000023197) #19	DACT1 (ENSGGOG00000015389) #20	ENSGGOG00000023777	DAAM1 (ENSGGOG00000012922) #22	L3HYPDH (ENSGGOG00000002461) #23	JKAMP (ENSGGOG00000002463) #24	CCDC175 (ENSGGOG00000002465) #25	RTN1 (ENSGGOG00000005855) #26	LRRC9 (ENSGGOG00000003571) #28	PCNX4 (ENSGGOG00000027487) #29	DHRS7 (ENSGGOG00000008367) #30	ENSGGOG00000023336	PPM1A (ENSGGOG00000010082) #31	C14orf39 (ENSGGOG00000010643) #32	SIX6 (ENSGGOG00000008594) #33	SIX1 (ENSGGOG00000001388) #34	SIX4 (ENSGGOG00000010018) #35	MNAT1 (ENSGGOG00000009127) #36	ENSGGOG00000023037
Orangutan	MODERN SPECIES	5	ENSPPYG00000005847	EXOC5 (ENSPPYG00000005848) #7	AP5M1 (ENSPPYG00000005849) #8	NAA30 (ENSPPYG00000005850) #9	CCDC198 (ENSPPYG00000005851) #10	SLC35F4 (ENSPPYG00000005852) #11	ARMH4 (ENSPPYG00000005853) #12	ACTR10 (ENSPPYG00000005854) #13	PSMA3 (ENSPPYG00000005855) #14	ARID4A (ENSPPYG00000005857) #15	ENSPPYG00000005858 #17	TIMM9 (ENSPPYG00000005859)	KIAA0586 (ENSPPYG00000005860) #19	DACT1 (ENSPPYG00000005861) #20	ENSPPYG00000032789	DAAM1 (ENSPPYG00000005862) #22	L3HYPDH (ENSPPYG00000005864) #23	ENSPPYG00000040391	JKAMP (ENSPPYG00000005865) #24	CCDC175 (ENSPPYG00000005866) #25	RTN1 (ENSPPYG00000005867) #26	LRRC9 (ENSPPYG00000005868) #28	PCNX4 (ENSPPYG00000005869) #29	DHRS7 (ENSPPYG00000005870) #30	PPM1A (ENSPPYG00000005871) #31	C14orf39 (ENSPPYG00000005872) #32	SIX6 (ENSPPYG00000031183) #33	SIX1 (ENSPPYG00000005874) #34	SIX4 (ENSPPYG00000005875) #35	MNAT1 (ENSPPYG00000005876) #36	ENSPPYG00000040801
Gibbon	MODERN SPECIES	10	ENSNLEG00000031520	EXOC5 (ENSNLEG00000013004) #7	AP5M1 (ENSNLEG00000013007) #8	NAA30 (ENSNLEG00000013016) #9	ENSNLEG00000013023 #10	SLC35F4 (ENSNLEG00000013028) #11	ARMH4 (ENSNLEG00000013033) #12	ACTR10 (ENSNLEG00000013052) #13	PSMA3 (ENSNLEG00000013092) #14	ARID4A (ENSNLEG00000013149) #15	TOMM20L (ENSNLEG00000013279) #17	TIMM9 (ENSNLEG00000036192)	KIAA0586 (ENSNLEG00000013301) #19	DACT1 (ENSNLEG00000013400) #20	ENSNLEG00000006038	DAAM1 (ENSNLEG00000013412) #22	L3HYPDH (ENSNLEG00000013439) #23	JKAMP (ENSNLEG00000013451) #24	CCDC175 (ENSNLEG00000013507) #25	RTN1 (ENSNLEG00000013528) #26	LRRC9 (ENSNLEG00000013643) #28	PCNX4 (ENSNLEG00000013667) #29	DHRS7 (ENSNLEG00000013686) #30	PPM1A (ENSNLEG00000013715) #31	C14orf39 (ENSNLEG00000013735) #32	SIX6 (ENSNLEG00000013765) #33	SIX1 (ENSNLEG00000013774) #34	MNAT1 (ENSNLEG00000013781) #36	ENSNLEG00000029817	TRMT5 (ENSNLEG00000013805) #37	SLC38A6 (ENSNLEG00000013812)
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.m #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Cebidae	ANCESTRAL SPECIES	3	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.m #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.b	ENSGT00940000153402.c.b.a.b.a.b.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.m #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Capuchin	MODERN SPECIES	83							HNRNPC (ENSCCAG00000025125)	TMEM253 (ENSCCAG00000030528)	ZNF219 (ENSCCAG00000033414)	ARHGEF40 (ENSCCAG00000032878)	NDRG2 (ENSCCAG00000028069)	TPPP2 (ENSCCAG00000037921)	SLC39A2 (ENSCCAG00000028665)	METTL17 (ENSCCAG00000035947)	ENSCCAG00000008336	DAAM1 (ENSCCAG00000020704) #22	ENSCCAG00000033210	L3HYPDH (ENSCCAG00000016249) #23	JKAMP (ENSCCAG00000034168) #24	CCDC175 (ENSCCAG00000029109) #25	RTN1 (ENSCCAG00000029137) #26	LRRC9 (ENSCCAG00000027847) #28	PCNX4 (ENSCCAG00000031427) #29	DHRS7 (ENSCCAG00000025684) #30	PPM1A (ENSCCAG00000023707) #31	C14orf39 (ENSCCAG00000033742) #32	SIX6 (ENSCCAG00000034242) #33	SIX1 (ENSCCAG00000021734) #34	SIX4 (ENSCCAG00000022445) #35	MNAT1 (ENSCCAG00000034022) #36	TRMT5 (ENSCCAG00000037835) #37
Bolivian squirrel monkey	MODERN SPECIES	52	SUPT16H (ENSSBOG00000005521)	RPGRIP1 (ENSSBOG00000022970)	ENSSBOG00000024757	ENSSBOG00000013901	TMEM253 (ENSSBOG00000033526)	ZNF219 (ENSSBOG00000035585)	ARHGEF40 (ENSSBOG00000023831)	NDRG2 (ENSSBOG00000018409)	RNASE8 (ENSSBOG00000035350)	TPPP2 (ENSSBOG00000020635)	SLC39A2 (ENSSBOG00000031319)	METTL17 (ENSSBOG00000020679)	ENSSBOG00000007632	RNASE4 (ENSSBOG00000033190)	ENSSBOG00000034234	DAAM1 (ENSSBOG00000034447) #22	ENSSBOG00000020505	L3HYPDH (ENSSBOG00000032716) #23	GPR135 (ENSSBOG00000028057)	JKAMP (ENSSBOG00000017743) #24	CCDC175 (ENSSBOG00000031269) #25	RTN1 (ENSSBOG00000024299) #26	LRRC9 (ENSSBOG00000018868) #28	PCNX4 (ENSSBOG00000019535) #29	DHRS7 (ENSSBOG00000031180) #30	PPM1A (ENSSBOG00000033152) #31	C14orf39 (ENSSBOG00000031723) #32	SIX6 (ENSSBOG00000033001) #33	SIX1 (ENSSBOG00000021555) #34	SIX4 (ENSSBOG00000034120) #35	ENSSBOG00000020551 #36
Marmoset	MODERN SPECIES	1	ENSCJAG00000085327	NAA30 (ENSCJAG00000018629) #9	CCDC198 (ENSCJAG00000018651) #10	SLC35F4 (ENSCJAG00000018660) #11	ENSCJAG00000042369	ARMH4 (ENSCJAG00000018672) #12	ENSCJAG00000079360	ACTR10 (ENSCJAG00000018680) #13	ENSCJAG00000018732 #14	ARID4A (ENSCJAG00000018764) #15	TIMM9 (ENSCJAG00000041647)	KIAA0586 (ENSCJAG00000018807) #19	DACT1 (ENSCJAG00000018902) #20	ENSCJAG00000074876	ENSCJAG00000079077	DAAM1 (ENSCJAG00000018906) #22	GPR135 (ENSCJAG00000018962)	L3HYPDH (ENSCJAG00000018964) #23	JKAMP (ENSCJAG00000018970) #24	CCDC175 (ENSCJAG00000018979) #25	RTN1 (ENSCJAG00000018989) #26	LRRC9 (ENSCJAG00000019037) #28	PCNX4 (ENSCJAG00000019055) #29	DHRS7 (ENSCJAG00000019070) #30	PPM1A (ENSCJAG00000019087) #31	C14orf39 (ENSCJAG00000019107) #32	SIX6 (ENSCJAG00000019120) #33	ENSCJAG00000084039	SIX1 (ENSCJAG00000063759) #34	ENSCJAG00000076403	SIX4 (ENSCJAG00000019133) #35
Mas night monkey	MODERN SPECIES	664																DAAM1 (ENSANAG00000025544) #22	PLA2G4F (ENSANAG00000038275)	VPS39 (ENSANAG00000028486)	ENSANAG00000038255	ENSANAG00000030941	TMEM87A (ENSANAG00000035734)	GANC (ENSANAG00000033793)	CAPN3 (ENSANAG00000037934)	ENSANAG00000037443	ZNF106 (ENSANAG00000034448)	SNAP23 (ENSANAG00000027684)	LRRC57 (ENSANAG00000021048)	HAUS2 (ENSANAG00000021259)	STARD9 (ENSANAG00000035167)	CDAN1 (ENSANAG00000004526)	TTBK2 (ENSANAG00000021335)
Tarsier	MODERN SPECIES	6158																DAAM1 (ENSTSYG00000009941) #22	L3HYPDH (ENSTSYG00000026200) #23	JKAMP (ENSTSYG00000001814) #24	CCDC175 (ENSTSYG00000001828) #25	RTN1 (ENSTSYG00000007391) #26	LRRC9 (ENSTSYG00000002569) #28
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Bushbaby	MODERN SPECIES	196	EXOC5 (ENSOGAG00000014948) #7	AP5M1 (ENSOGAG00000014952) #8	ENSOGAG00000031518	NAA30 (ENSOGAG00000017020) #9	CCDC198 (ENSOGAG00000017021) #10	SLC35F4 (ENSOGAG00000008907) #11	ARMH4 (ENSOGAG00000013277) #12	ENSOGAG00000000380 #13	PSMA3 (ENSOGAG00000000382) #14	ARID4A (ENSOGAG00000000385) #15	TOMM20L (ENSOGAG00000002471) #17	ENSOGAG00000002472	KIAA0586 (ENSOGAG00000002474) #19	DACT1 (ENSOGAG00000027814) #20	ENSOGAG00000025505	DAAM1 (ENSOGAG00000004895) #22	L3HYPDH (ENSOGAG00000032453) #23	JKAMP (ENSOGAG00000014225) #24	ENSOGAG00000026652 #26	ENSOGAG00000029809 #26	LRRC9 (ENSOGAG00000004972) #28	PCNX4 (ENSOGAG00000034035) #29	DHRS7 (ENSOGAG00000006360) #30	PPM1A (ENSOGAG00000003689) #31	C14orf39 (ENSOGAG00000005798) #32	SIX6 (ENSOGAG00000033548) #33	SIX1 (ENSOGAG00000012932) #34	SIX4 (ENSOGAG00000016082) #35	MNAT1 (ENSOGAG00000016085) #36	TRMT5 (ENSOGAG00000016088) #37	SLC38A6 (ENSOGAG00000016089)
Lemuriformes	ANCESTRAL SPECIES	28	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	22	OTX2 (ENSMICG00000028939)	ENSMICG00000032375	EXOC5 (ENSMICG00000003597) #7	AP5M1 (ENSMICG00000034728) #8	NAA30 (ENSMICG00000030737) #9	CCDC198 (ENSMICG00000005297) #10	SLC35F4 (ENSMICG00000005305) #11	ARMH4 (ENSMICG00000001034) #12	ENSMICG00000028564 #13	PSMA3 (ENSMICG00000011559) #14	ARID4A (ENSMICG00000011761) #15	TOMM20L (ENSMICG00000046289) #17	ENSMICG00000044245	KIAA0586 (ENSMICG00000011796) #19	DACT1 (ENSMICG00000004813) #20	ENSMICG00000012461 #22	GPR135 (ENSMICG00000012482)	L3HYPDH (ENSMICG00000012485) #23	JKAMP (ENSMICG00000012491) #24	CCDC175 (ENSMICG00000012495) #25	RTN1 (ENSMICG00000012512) #26	LRRC9 (ENSMICG00000037017) #28	PCNX4 (ENSMICG00000034043) #29	DHRS7 (ENSMICG00000012540) #30	MDGA2 (ENSMICG00000037394)	MIS18BP1 (ENSMICG00000005844)	FANCM (ENSMICG00000005811)	FKBP3 (ENSMICG00000005808)	PRPF39 (ENSMICG00000005802)	TOGARAM1 (ENSMICG00000015705)	KLHL28 (ENSMICG00000000634)
Mouse lemur	MODERN SPECIES	169	ENSMICG00000043176	ENSMICG00000037711	GPC4 (ENSMICG00000015827)	ENSMICG00000030494	GPC3 (ENSMICG00000015838)	ENSMICG00000032791	PHF6 (ENSMICG00000006541)	HPRT1 (ENSMICG00000006547)	PLAC1 (ENSMICG00000037036)	PABIR2 (ENSMICG00000006564)	ENSMICG00000043142	MOSPD1 (ENSMICG00000006580)	ENSMICG00000033942	ENSMICG00000036912	ENSMICG00000048125	ENSMICG00000034505 #22	ZNF75D (ENSMICG00000005209)	ENSMICG00000031062	ENSMICG00000035619	CT55 (ENSMICG00000047795)	ZNF449 (ENSMICG00000003164)	ENSMICG00000043469	ENSMICG00000031214	INTS6L (ENSMICG00000014196)	ENSMICG00000047091	SLC9A6 (ENSMICG00000011746)	ENSMICG00000009342	MAP7D3 (ENSMICG00000037426)	ADGRG4 (ENSMICG00000035091)	FMR1 (ENSMICG00000000838)	ENSMICG00000045581
Lemuriformes_a	ANCESTRAL SPECIES	11	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Greater bamboo lemur	MODERN SPECIES	228							ENSPSMG00000025831	ACTR10 (ENSPSMG00000025830) #13	PSMA3 (ENSPSMG00000025829) #14	ARID4A (ENSPSMG00000025820) #15	TOMM20L (ENSPSMG00000025815) #17	TIMM9 (ENSPSMG00000025813)	KIAA0586 (ENSPSMG00000025808) #19	DACT1 (ENSPSMG00000025802) #20	ENSPSMG00000025801	DAAM1 (ENSPSMG00000025800) #22	GPR135 (ENSPSMG00000025798)	L3HYPDH (ENSPSMG00000025797) #23	JKAMP (ENSPSMG00000025795) #24	CCDC175 (ENSPSMG00000025792) #25	RTN1 (ENSPSMG00000025787) #26	LRRC9 (ENSPSMG00000025773) #28	PCNX4 (ENSPSMG00000025766) #29	DHRS7 (ENSPSMG00000025761) #30	PPM1A (ENSPSMG00000025758) #31	C14orf39 (ENSPSMG00000025754) #32	SIX6 (ENSPSMG00000025751) #33	SIX1 (ENSPSMG00000025749) #34	SIX4 (ENSPSMG00000025746) #35	ENSPSMG00000025745	MNAT1 (ENSPSMG00000025744) #36
Coquerels sifaka	MODERN SPECIES	653															DACT1 (ENSPCOG00000028659) #20	DAAM1 (ENSPCOG00000026863) #22	L3HYPDH (ENSPCOG00000026037) #23	JKAMP (ENSPCOG00000023039) #24	CCDC175 (ENSPCOG00000015679) #25	RTN1 (ENSPCOG00000025276) #26	LRRC9 (ENSPCOG00000019961) #28	PCNX4 (ENSPCOG00000003204) #29	DHRS7 (ENSPCOG00000027040) #30	PPM1A (ENSPCOG00000023841) #31	C14orf39 (ENSPCOG00000016983) #32	SIX6 (ENSPCOG00000015355) #33	SIX1 (ENSPCOG00000016308) #34	SIX4 (ENSPCOG00000024138) #35	MNAT1 (ENSPCOG00000019718) #36	TRMT5 (ENSPCOG00000017447) #37	SLC38A6 (ENSPCOG00000024923)
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Tree shrew	MODERN SPECIES	5975																DAAM1 (ENSTBEG00000008611) #22
Glires	ANCESTRAL SPECIES	12	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000156452 #22
Rabbit	MODERN SPECIES	11	RBPMS (ENSOCUG00000008572)	DCTN6 (ENSOCUG00000010968)	MBOAT4 (ENSOCUG00000014856)	LEPROTL1 (ENSOCUG00000013931)	SARAF (ENSOCUG00000020996)	ENSOCUG00000031691	ENSOCUG00000034822	ENSOCUG00000037183	ENSOCUG00000011121	ENSOCUG00000035229	ENSOCUG00000038466	ENSOCUG00000035204	ENSOCUG00000030247	ENSOCUG00000012821	ENSOCUG00000007349	DAAM1 (ENSOCUG00000003608) #22	ENSOCUG00000034997	GPR135 (ENSOCUG00000007547)	SOWAHC (ENSOCUG00000003325)	SEPTIN10 (ENSOCUG00000006502)	SH3RF3 (ENSOCUG00000014996)	EDAR (ENSOCUG00000025015)	CCDC138 (ENSOCUG00000001172)	ENSOCUG00000038349	ENSOCUG00000034682	ENSOCUG00000001165	ENSOCUG00000004451	GCC2 (ENSOCUG00000017849)	SULT1C2 (ENSOCUG00000013192)	SULT1C3 (ENSOCUG00000004360)	SLC5A7 (ENSOCUG00000001049)
Pika	MODERN SPECIES	5272																DAAM1 (ENSOPRG00000005334) #22
Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000154832.m.a #31	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Muroidea	ANCESTRAL SPECIES	16	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097.i #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b	ENSGT00940000161597	ENSGT00950000183148.a	ENSGT00940000154071.A	ENSGT00940000155959	ENSGT00940000155517	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097.i #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b	ENSGT00940000161597	ENSGT00950000183148.a	ENSGT00940000154071.A	ENSGT00940000155959	ENSGT00940000155517	ENSGT00910000144250.cb #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097.i #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b	ENSGT00940000161597	ENSGT00950000183148.a	ENSGT00940000154071.A	ENSGT00940000155959	ENSGT00940000155517	ENSGT00910000144250.cb #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097.i #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Chinese hamster chok1gshd	MODERN SPECIES	2	Nin (ENSCGRG00001020642)	Abhd12b (ENSCGRG00001017992)	Pygl (ENSCGRG00001020410)	Trim9 (ENSCGRG00001003585)	ENSCGRG00001000492	Tmx1 (ENSCGRG00001017821)	Frmd6 (ENSCGRG00001014895)	Actr10 (ENSCGRG00001021929) #13	Psma3 (ENSCGRG00001020109) #14	Arid4a (ENSCGRG00001018168) #15	Tomm20l (ENSCGRG00001017252) #17	Timm9 (ENSCGRG00001006577)	2700049A03Rik (ENSCGRG00001014970) #19	Dact1 (ENSCGRG00001013082) #20	ENSCGRG00001009458	Daam1 (ENSCGRG00001023737) #22	Gpr135 (ENSCGRG00001011215)	L3hypdh (ENSCGRG00001016943) #23	Jkamp (ENSCGRG00001015524) #24	Rtn1 (ENSCGRG00001017706) ##26	Lrrc9 (ENSCGRG00001014760) #28	Pcnx4 (ENSCGRG00001003784) #29	Gm4756 (ENSCGRG00001023826) #30	Dhrs7 (ENSCGRG00001021840) #30	Ppm1a (ENSCGRG00001021488) #31	4930447C04Rik (ENSCGRG00001020319) #32	Six6 (ENSCGRG00001018924) #33	Six1 (ENSCGRG00001016794) #34	Six4 (ENSCGRG00001015581) #35	Mnat1 (ENSCGRG00001013958) #36	TRMT5 (ENSCGRG00001018337) #37
Golden Hamster	MODERN SPECIES	652	Cdkl1 (ENSMAUG00000020825)	Map4k5 (ENSMAUG00000020655)	Atl1 (ENSMAUG00000016977)	Sav1 (ENSMAUG00000018575)	Abhd12b (ENSMAUG00000011642)	Pygl (ENSMAUG00000012424)	Trim9 (ENSMAUG00000018818)	ENSMAUG00000008858	Tmx1 (ENSMAUG00000011486)	Frmd6 (ENSMAUG00000015963)	ENSMAUG00000016337 #13	Psma3 (ENSMAUG00000020737) #14	Arid4a (ENSMAUG00000016160) #15	Tomm20l (ENSMAUG00000007310) #17	Dact1 (ENSMAUG00000008693) #20	Daam1 (ENSMAUG00000003647) #22	L3hypdh (ENSMAUG00000008290) #23	Jkamp (ENSMAUG00000013918) #24	Ccdc175 (ENSMAUG00000012981) #25	ENSMAUG00000016295 ##26	Lrrc9 (ENSMAUG00000002601) #28	Pcnx4 (ENSMAUG00000005473) #29	Gm4756 (ENSMAUG00000008532) #30	ENSMAUG00000008159	ENSMAUG00000008077	Ppm1a (ENSMAUG00000021901) #31	4930447C04Rik (ENSMAUG00000016740) #32	Six6 (ENSMAUG00000008118) #33	Six1 (ENSMAUG00000018841) #34	Six4 (ENSMAUG00000013213) #35	Mnat1 (ENSMAUG00000018674) #36
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b	ENSGT00940000161597	ENSGT00950000183148.a	ENSGT00940000154071.A	ENSGT00940000155959	ENSGT00940000155517	ENSGT00910000144250.cb #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097.i #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Northern American deer mouse	MODERN SPECIES	5	Cbll1 (ENSPEMG00000016994)	Slc26a3 (ENSPEMG00000017953)	Dld (ENSPEMG00000023398)	Lamb1 (ENSPEMG00000023873)	ENSPEMG00000015911	ENSPEMG00000028645	Actr10 (ENSPEMG00000017118) #13	Psma3 (ENSPEMG00000015781) #14	Arid4a (ENSPEMG00000008231) #15	ENSPEMG00000025117	Tomm20l (ENSPEMG00000009988) #17	Timm9 (ENSPEMG00000029097)	2700049A03Rik (ENSPEMG00000008923) #19	Dact1 (ENSPEMG00000015114) #20	ENSPEMG00000027832	Daam1 (ENSPEMG00000007798) #22	Gpr135 (ENSPEMG00000013964)	L3hypdh (ENSPEMG00000013509) #23	Jkamp (ENSPEMG00000003920) #24	Ccdc175 (ENSPEMG00000025864) #25	Rtn1 (ENSPEMG00000014989) ##26	Lrrc9 (ENSPEMG00000018166) #28	Pcnx4 (ENSPEMG00000012337) #29	ENSPEMG00000010519 #30	Dhrs7 (ENSPEMG00000022404) #30	ENSPEMG00000022755 #31	4930447C04Rik (ENSPEMG00000022526) #32	Six6 (ENSPEMG00000023894) #33	Six1 (ENSPEMG00000023303) #34	Six4 (ENSPEMG00000023238) #35	Mnat1 (ENSPEMG00000010838) #36
Prairie vole	MODERN SPECIES		Slc38a6 (ENSMOCG00000012994)	Trmt5 (ENSMOCG00000020904) #37	Mnat1 (ENSMOCG00000021804) #36	Abhd12b (ENSMOCG00000004427)	Pygl (ENSMOCG00000019214)	Trim9 (ENSMOCG00000017949)	Tmx1 (ENSMOCG00000010006)	Frmd6 (ENSMOCG00000002317)	Actr10 (ENSMOCG00000001339) #13	Psma3 (ENSMOCG00000011319) #14	Arid4a (ENSMOCG00000010098) #15	Tomm20l (ENSMOCG00000002773) #17	Timm9 (ENSMOCG00000001817)	ENSMOCG00000014334 #19	Dact1 (ENSMOCG00000016254) #20	Daam1 (ENSMOCG00000019057) #22	Gpr135 (ENSMOCG00000012134)	L3hypdh (ENSMOCG00000022649) #23	Jkamp (ENSMOCG00000022061) #24	Ccdc175 (ENSMOCG00000018926) #25	ENSMOCG00000017923 ##26	Lrrc9 (ENSMOCG00000017244) #28	Pcnx4 (ENSMOCG00000007196) #29	Gm4756 (ENSMOCG00000021237) #30	Dhrs7 (ENSMOCG00000017844) #30	ENSMOCG00000013291 #31	ENSMOCG00000000739	ENSMOCG00000008746	Six6 (ENSMOCG00000001167) #33	Six1 (ENSMOCG00000000863) #34	Six4 (ENSMOCG00000022987) #35
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000156106	ENSGT00660000095541.a.b	ENSGT00940000161597	ENSGT00950000183148.a	ENSGT00940000154071.A	ENSGT00940000155959	ENSGT00940000155517	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT01050000248157	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097.i #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Mus	ANCESTRAL SPECIES	10	ENSGT00940000156106	ENSGT00660000095541.a.b	ENSGT00940000161597	ENSGT00950000183148.a	ENSGT00940000154071.A	ENSGT00940000155959	ENSGT00940000155517	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT01050000248157	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097.i #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000156106	ENSGT00660000095541.a.b	ENSGT00940000161597	ENSGT00950000183148.a	ENSGT00940000154071.A	ENSGT00940000155959	ENSGT00940000155517	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT01050000248157	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097.i #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000156106	ENSGT00660000095541.a.b	ENSGT00940000161597	ENSGT00950000183148.a	ENSGT00940000154071.A	ENSGT00940000155959	ENSGT00940000155517	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT01050000248157	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097.i #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Mouse	MODERN SPECIES	3	Atl1 (ENSMUSG00000021066)	Sav1 (ENSMUSG00000021067)	Nin (ENSMUSG00000021068)	Abhd12b (ENSMUSG00000090121)	Pygl (ENSMUSG00000021069)	Trim9 (ENSMUSG00000021071)	Tmx1 (ENSMUSG00000021072)	Frmd6 (ENSMUSG00000048285)	Actr10 (ENSMUSG00000021076) #13	Psma3 (ENSMUSG00000060073) #14	Arid4a (ENSMUSG00000048118) #15	Tomm20l (ENSMUSG00000021078) #17	Timm9 (ENSMUSG00000021079)	2700049A03Rik (ENSMUSG00000034601) #19	Dact1 (ENSMUSG00000044548) #20	Daam1 (ENSMUSG00000034574) #22	Gpr135 (ENSMUSG00000043398)	L3hypdh (ENSMUSG00000019718) #23	Jkamp (ENSMUSG00000005078) #24	Ccdc175 (ENSMUSG00000021086) #25	Rtn1 (ENSMUSG00000021087) ##26	Lrrc9 (ENSMUSG00000021090) #28	Pcnx4 (ENSMUSG00000034501) #29	Gm4756 (ENSMUSG00000109482) #30	Dhrs7 (ENSMUSG00000021094) #30	Ppm1a (ENSMUSG00000021096) #31	4930447C04Rik (ENSMUSG00000021098) #32	Six6 (ENSMUSG00000021099) #33	Six1 (ENSMUSG00000051367) #34	Six4 (ENSMUSG00000034460) #35	Mnat1 (ENSMUSG00000021103) #36
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000156106	ENSGT00660000095541.a.b	ENSGT00940000161597	ENSGT00950000183148.a	ENSGT00940000154071.A	ENSGT00940000155959	ENSGT00940000155517	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT01050000248157	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097.i #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a #30	ENSGT00940000155226.q.b #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Steppe mouse	MODERN SPECIES	3155															ENSMSIG00000025552	Daam1 (ENSMSIG00000025185) #22	Gpr135 (ENSMSIG00000025173)	L3hypdh (ENSMSIG00000025161) #23	Jkamp (ENSMSIG00000025125) #24	Ccdc175 (ENSMSIG00000025076) #25	Rtn1 (ENSMSIG00000025045) ##26	Lrrc9 (ENSMSIG00000024967) #28	Pcnx4 (ENSMSIG00000024955) #29	Gm4756 (ENSMSIG00000024922) #30	Dhrs7 (ENSMSIG00000024915) #30	ENSMSIG00000024898 #31	4930447C04Rik (ENSMSIG00000024836) #32	Six6 (ENSMSIG00000024826) #33	ENSMSIG00000024815	Six1 (ENSMSIG00000024807) #34	Six4 (ENSMSIG00000024804) #35
spretus	MODERN SPECIES	3	MGP_SPRETEiJ_G0018659	Sav1 (MGP_SPRETEiJ_G0018660)	Nin (MGP_SPRETEiJ_G0018661)	Abhd12b (MGP_SPRETEiJ_G0018662)	Pygl (MGP_SPRETEiJ_G0018663)	Trim9 (MGP_SPRETEiJ_G0018664)	Tmx1 (MGP_SPRETEiJ_G0018665)	Frmd6 (MGP_SPRETEiJ_G0018666)	Actr10 (MGP_SPRETEiJ_G0018667) #13	Psma3 (MGP_SPRETEiJ_G0018668) #14	Arid4a (MGP_SPRETEiJ_G0018669) #15	Tomm20l (MGP_SPRETEiJ_G0018670) #17	Timm9 (MGP_SPRETEiJ_G0018671)	2700049A03Rik (MGP_SPRETEiJ_G0018672) #19	Dact1 (MGP_SPRETEiJ_G0018673) #20	Daam1 (MGP_SPRETEiJ_G0018674) #22	Gpr135 (MGP_SPRETEiJ_G0018675)	L3hypdh (MGP_SPRETEiJ_G0018676) #23	Jkamp (MGP_SPRETEiJ_G0018677) #24	Ccdc175 (MGP_SPRETEiJ_G0018678) #25	Rtn1 (MGP_SPRETEiJ_G0018679) ##26	Lrrc9 (MGP_SPRETEiJ_G0018680) #28	Pcnx4 (MGP_SPRETEiJ_G0018681) #29	MGP_SPRETEiJ_G0018682 #30	Dhrs7 (MGP_SPRETEiJ_G0018683) #30	MGP_SPRETEiJ_G0018684 #31	4930447C04Rik (MGP_SPRETEiJ_G0018685) #32	Six6 (MGP_SPRETEiJ_G0018686) #33	Six1 (MGP_SPRETEiJ_G0018687) #34	Six4 (MGP_SPRETEiJ_G0018688) #35	Mnat1 (MGP_SPRETEiJ_G0018689) #36
Ryukyu mouse	MODERN SPECIES	3	MGP_CAROLIEiJ_G0017814	Sav1 (MGP_CAROLIEiJ_G0017815)	Nin (MGP_CAROLIEiJ_G0017816)	Abhd12b (MGP_CAROLIEiJ_G0017817)	Pygl (MGP_CAROLIEiJ_G0017818)	Trim9 (MGP_CAROLIEiJ_G0017819)	Tmx1 (MGP_CAROLIEiJ_G0017820)	Frmd6 (MGP_CAROLIEiJ_G0017821)	Actr10 (MGP_CAROLIEiJ_G0017822) #13	Psma3 (MGP_CAROLIEiJ_G0017823) #14	Arid4a (MGP_CAROLIEiJ_G0017824) #15	Tomm20l (MGP_CAROLIEiJ_G0017825) #17	MGP_CAROLIEiJ_G0017826	2700049A03Rik (MGP_CAROLIEiJ_G0017827) #19	Dact1 (MGP_CAROLIEiJ_G0017828) #20	Daam1 (MGP_CAROLIEiJ_G0017829) #22	Gpr135 (MGP_CAROLIEiJ_G0017830)	L3hypdh (MGP_CAROLIEiJ_G0017831) #23	Jkamp (MGP_CAROLIEiJ_G0017832) #24	MGP_CAROLIEiJ_G0017833 #25	Rtn1 (MGP_CAROLIEiJ_G0017834) ##26	Lrrc9 (MGP_CAROLIEiJ_G0017835) #28	Pcnx4 (MGP_CAROLIEiJ_G0017836) #29	Dhrs7 (MGP_CAROLIEiJ_G0017837) #30	4930447C04Rik (MGP_CAROLIEiJ_G0017838) #32	Six6 (MGP_CAROLIEiJ_G0017839) #33	Six1 (MGP_CAROLIEiJ_G0017840) #34	Six4 (MGP_CAROLIEiJ_G0017841) #35	Mnat1 (MGP_CAROLIEiJ_G0017842) #36	Trmt5 (MGP_CAROLIEiJ_G0017843) #37	Slc38a6 (MGP_CAROLIEiJ_G0017844)
Shrew mouse	MODERN SPECIES	20	MGP_PahariEiJ_G0029570	Sav1 (MGP_PahariEiJ_G0029571)	Nin (MGP_PahariEiJ_G0029572)	Abhd12b (MGP_PahariEiJ_G0029573)	Pygl (MGP_PahariEiJ_G0029574)	Trim9 (MGP_PahariEiJ_G0029575)	Tmx1 (MGP_PahariEiJ_G0029576)	Frmd6 (MGP_PahariEiJ_G0029577)	Actr10 (MGP_PahariEiJ_G0029578) #13	Psma3 (MGP_PahariEiJ_G0029579) #14	Arid4a (MGP_PahariEiJ_G0029580) #15	Tomm20l (MGP_PahariEiJ_G0029581) #17	Timm9 (MGP_PahariEiJ_G0029582)	2700049A03Rik (MGP_PahariEiJ_G0029583) #19	Dact1 (MGP_PahariEiJ_G0029584) #20	Daam1 (MGP_PahariEiJ_G0029585) #22	Gpr135 (MGP_PahariEiJ_G0029586)	L3hypdh (MGP_PahariEiJ_G0029587) #23	Jkamp (MGP_PahariEiJ_G0029588) #24	Ccdc175 (MGP_PahariEiJ_G0029589) #25	Rtn1 (MGP_PahariEiJ_G0029590) ##26	Lrrc9 (MGP_PahariEiJ_G0029591) #28	Pcnx4 (MGP_PahariEiJ_G0029592) #29	MGP_PahariEiJ_G0029593 #30	MGP_PahariEiJ_G0029594	Ppm1a (MGP_PahariEiJ_G0029595) #31	4930447C04Rik (MGP_PahariEiJ_G0029596) #32	Six6 (MGP_PahariEiJ_G0029597) #33	Six1 (MGP_PahariEiJ_G0029598) #34	Six4 (MGP_PahariEiJ_G0029599) #35	Mnat1 (MGP_PahariEiJ_G0029600) #36
Rat	MODERN SPECIES	16	Nin (ENSRNOG00000005540)	Abhd12b (ENSRNOG00000026855)	Pygl (ENSRNOG00000006388)	Trim9 (ENSRNOG00000007031)	Tmx1 (ENSRNOG00000057934)	Frmd6 (ENSRNOG00000007329)	Actr10 (ENSRNOG00000007504) #13	Psma3 (ENSRNOG00000007851) #14	ENSRNOG00000062478	Arid4a (ENSRNOG00000026239) #15	Tomm20l (ENSRNOG00000054663) #17	Timm9 (ENSRNOG00000008222)	LOC690035 (ENSRNOG00000008244) #19	Dact1 (ENSRNOG00000008445) #20	AABR07064753.1 (ENSRNOG00000032924)	Daam1 (ENSRNOG00000004345) #22	Gpr135 (ENSRNOG00000004499)	L3hypdh (ENSRNOG00000004503) #23	AABR07047593.1 (ENSRNOG00000006971)	Jkamp (ENSRNOG00000004751) #24	Ccdc175 (ENSRNOG00000004774) #25	Rtn1 (ENSRNOG00000004794) ##26	ENSRNOG00000068248	Lrrc9 (ENSRNOG00000005409) #28	AABR07064804.1 (ENSRNOG00000005568) #29	LOC120093108 (ENSRNOG00000067058) #30	Dhrs7 (ENSRNOG00000005589) #30	Dhrs7l1 (ENSRNOG00000025648) #30	LOC100361944 (ENSRNOG00000029172)	Ppm1a (ENSRNOG00000005916) #31	Six6os1 (ENSRNOG00000031655) #32
Upper Galilee mountains blind mole rat	MODERN SPECIES	1068	Otx2 (ENSNGAG00000015521)	Exoc5 (ENSNGAG00000000258) #7	Ap5m1 (ENSNGAG00000010113) #8	Naa30 (ENSNGAG00000007396) #9	ccdc198 (ENSNGAG00000016223) #10	Slc35f4 (ENSNGAG00000017272) #11	Armh4 (ENSNGAG00000008903) #12	ENSNGAG00000019693	Actr10 (ENSNGAG00000020352) #13	ENSNGAG00000012537 #14	Arid4a (ENSNGAG00000015701) #15	Timm9 (ENSNGAG00000012518)	2700049A03Rik (ENSNGAG00000018580) #19	ENSNGAG00000008848	Dact1 (ENSNGAG00000016582) #20	Daam1 (ENSNGAG00000011448) #22	Gpr135 (ENSNGAG00000018914)	ENSNGAG00000014758	L3hypdh (ENSNGAG00000011558) #23	Jkamp (ENSNGAG00000011860) #24	Ccdc175 (ENSNGAG00000017464) #25	ENSNGAG00000007542 ##26	Lrrc9 (ENSNGAG00000000711) #28	Pcnx4 (ENSNGAG00000007598) #29	Gm4756 (ENSNGAG00000014268) #30	Dhrs7 (ENSNGAG00000019713) #30	Ppm1a (ENSNGAG00000018231) #31	4930447C04Rik (ENSNGAG00000016529) #32	Six6 (ENSNGAG00000011750) #33	Six1 (ENSNGAG00000004807) #34	Six4 (ENSNGAG00000016948) #35
Lesser Egyptian jerboa	MODERN SPECIES	41	Tmem260 (ENSJJAG00000012902)	Otx2 (ENSJJAG00000012995)	Exoc5 (ENSJJAG00000024175) #7	Ap5m1 (ENSJJAG00000011637) #8	Naa30 (ENSJJAG00000024025) #9	ccdc198 (ENSJJAG00000008303) #10	Slc35f4 (ENSJJAG00000001648) #11	ENSJJAG00000013603	Armh4 (ENSJJAG00000017470) #12	Actr10 (ENSJJAG00000018421) #13	ENSJJAG00000001749 #14	Arid4a (ENSJJAG00000016742) #15	Timm9 (ENSJJAG00000007980)	2700049A03Rik (ENSJJAG00000003167) #19	Dact1 (ENSJJAG00000023135) #20	Daam1 (ENSJJAG00000018690) #22	Gpr135 (ENSJJAG00000022088)	L3hypdh (ENSJJAG00000022907) #23	ENSJJAG00000018222 #24	ENSJJAG00000002864 ##26	Lrrc9 (ENSJJAG00000018313) #28	Pcnx4 (ENSJJAG00000010856) #29	ENSJJAG00000018132 #30	ENSJJAG00000001040	Dhrs7 (ENSJJAG00000020161) #30	ENSJJAG00000020601 #31	ENSJJAG00000014875	Six6 (ENSJJAG00000000807) #33	Six1 (ENSJJAG00000010515) #34	Six4 (ENSJJAG00000000414) #35	Mnat1 (ENSJJAG00000007692) #36
Kangaroo rat	MODERN SPECIES	321											Actr10 (ENSDORG00000008332) #13	ENSDORG00000002167 #14	Arid4a (ENSDORG00000002170) #15	Timm9 (ENSDORG00000028490)	ENSDORG00000024020	Daam1 (ENSDORG00000009794) #22	Gpr135 (ENSDORG00000023535)	L3hypdh (ENSDORG00000004259) #23	ENSDORG00000004260 #24	ENSDORG00000024605	Rtn1 (ENSDORG00000008249) ##26	Lrrc9 (ENSDORG00000005872) #28	Pcnx4 (ENSDORG00000004066) #29	Ppm1a (ENSDORG00000007776) #31	ENSDORG00000026413 #14	Six6 (ENSDORG00000007182) #33	Six1 (ENSDORG00000013889) #34	Six4 (ENSDORG00000023692) #35	Mnat1 (ENSDORG00000015553) #36	Trmt5 (ENSDORG00000015555) #37	Slc38a6 (ENSDORG00000015558)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.r #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000155014	ENSGT01010000230324	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.r #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Marmotini	ANCESTRAL SPECIES	15	ENSGT00940000155014	ENSGT01010000230324	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.r #30	ENSGT00940000154832.n #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Marmotini_b	ANCESTRAL SPECIES	14	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191.e #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.r #30	ENSGT00940000154832.n #31	ENSGT00550000074873.l.b.c	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Arctic ground squirrel	MODERN SPECIES	442														KIAA0586 (ENSUPAG00010002504) #19	DACT1 (ENSUPAG00010002490) #20	DAAM1 (ENSUPAG00010002365) #22	GPR135 (ENSUPAG00010002360)	L3HYPDH (ENSUPAG00010002345) #23	JKAMP (ENSUPAG00010002317) #24	CCDC175 (ENSUPAG00010002299) #25	RTN1 (ENSUPAG00010002252) #26	LRRC9 (ENSUPAG00010001941) #28	PCNX4 (ENSUPAG00010001916) #29	DHRS7 (ENSUPAG00010001895) #30
Squirrel	MODERN SPECIES	95	OTX2 (ENSSTOG00000028544)	EXOC5 (ENSSTOG00000024424) #7	ENSSTOG00000011073 #8	NAA30 (ENSSTOG00000011080) #9	CCDC198 (ENSSTOG00000010860) #10	SLC35F4 (ENSSTOG00000010865) #11	ARMH4 (ENSSTOG00000013525) #12	ACTR10 (ENSSTOG00000013532) #13	PSMA3 (ENSSTOG00000013539) #14	ARID4A (ENSSTOG00000019680) #15	ENSSTOG00000031234	TIMM9 (ENSSTOG00000030979)	KIAA0586 (ENSSTOG00000000221) #19	DACT1 (ENSSTOG00000028057) #20	ENSSTOG00000032385	DAAM1 (ENSSTOG00000003389) #22	GPR135 (ENSSTOG00000003415)	ENSSTOG00000030470	RTN1 (ENSSTOG00000023340) #26	LRRC9 (ENSSTOG00000024770) #28	PCNX4 (ENSSTOG00000005741) #29	DHRS7 (ENSSTOG00000007361) #30	ENSSTOG00000029945	PPM1A (ENSSTOG00000014586) #31	ENSSTOG00000021643	C14orf39 (ENSSTOG00000031022) #32	SIX6 (ENSSTOG00000014602) #33	SIX1 (ENSSTOG00000027309) #34	SIX4 (ENSSTOG00000029039) #35	MNAT1 (ENSSTOG00000023345) #36	TRMT5 (ENSSTOG00000011865) #37
Alpin marmot	MODERN SPECIES	7	ENSMMMG00000005219	EXOC5 (ENSMMMG00000005231) #7	AP5M1 (ENSMMMG00000005334) #8	ENSMMMG00000005364	NAA30 (ENSMMMG00000005369) #9	CCDC198 (ENSMMMG00000005385) #10	SLC35F4 (ENSMMMG00000005414) #11	ARMH4 (ENSMMMG00000005430) #12	ACTR10 (ENSMMMG00000005466) #13	PSMA3 (ENSMMMG00000005482) #14	ARID4A (ENSMMMG00000005513) #15	ENSMMMG00000005547	TIMM9 (ENSMMMG00000005557)	KIAA0586 (ENSMMMG00000005607) #19	DACT1 (ENSMMMG00000005720) #20	DAAM1 (ENSMMMG00000005751) #22	GPR135 (ENSMMMG00000005921)	L3HYPDH (ENSMMMG00000005927) #23	JKAMP (ENSMMMG00000005935) #24	CCDC175 (ENSMMMG00000005957) #25	RTN1 (ENSMMMG00000006010) #26	ENSMMMG00000006035	LRRC9 (ENSMMMG00000006040) #28	PCNX4 (ENSMMMG00000006153) #29	ENSMMMG00000006169 #30	ENSMMMG00000006186 #30
Eurasian red squirrel	MODERN SPECIES	11	NAA30 (ENSSVLG00005003191) #9	CCDC198 (ENSSVLG00005003166) #10	ENSSVLG00005003152	SLC35F4 (ENSSVLG00005003120) #11	ARMH4 (ENSSVLG00005003094) #12	ACTR10 (ENSSVLG00005003078) #13	PSMA3 (ENSSVLG00005003023) #14	ARID4A (ENSSVLG00005002973) #15	TOMM20L (ENSSVLG00005002927) #17	TIMM9 (ENSSVLG00005002892)	KIAA0586 (ENSSVLG00005002832) #19	DACT1 (ENSSVLG00005002770) #20	ENSSVLG00005002748	ENSSVLG00005002731	ENSSVLG00005002714	DAAM1 (ENSSVLG00005002685) #22	GPR135 (ENSSVLG00005002649)	L3HYPDH (ENSSVLG00005002632) #23	JKAMP (ENSSVLG00005002582) #24	CCDC175 (ENSSVLG00005002526) #25	ENSSVLG00005002502	ENSSVLG00005002481	RTN1 (ENSSVLG00005002388) #26	LRRC9 (ENSSVLG00005002265) #28	PCNX4 (ENSSVLG00005002224) #29	DHRS7 (ENSSVLG00005002208) #30	PPM1A (ENSSVLG00005002171) #31	C14orf39 (ENSSVLG00005002129) #32	SIX6 (ENSSVLG00005002114) #33	ENSSVLG00005002107 #34	SIX4 (ENSSVLG00005002094) #35
Hystricomorpha	ANCESTRAL SPECIES	33	ENSGT00950000183050.b.a	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102.p	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226.q.a.d #30	ENSGT00940000154832.m.a #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00950000183050.b.a	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102.p	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158237	ENSGT00940000159561	ENSGT00390000011854	ENSGT00530000064222.b
Guinea pig	MODERN SPECIES	20	ENSCPOG00000023496	PELI2 (ENSCPOG00000040104)	TMEM260 (ENSCPOG00000005778)	OTX2 (ENSCPOG00000003420)	EXOC5 (ENSCPOG00000011745) #7	AP5M1 (ENSCPOG00000003004) #8	CCDC198 (ENSCPOG00000003345) #10	SLC35F4 (ENSCPOG00000011150) #11	ACTR10 (ENSCPOG00000008553) #13	PSMA3 (ENSCPOG00000006114) #14	ENSCPOG00000032725 #15	ENSCPOG00000009290 #15	TIMM9 (ENSCPOG00000035363)	KIAA0586 (ENSCPOG00000001244) #19	DACT1 (ENSCPOG00000039410) #20	DAAM1 (ENSCPOG00000013581) #22	L3HYPDH (ENSCPOG00000014476) #23	JKAMP (ENSCPOG00000014480) #24	ENSCPOG00000007411 ##26	KTN1 (ENSCPOG00000014763)	TBPL2 (ENSCPOG00000006151)	ATG14 (ENSCPOG00000001010)	FBXO34 (ENSCPOG00000032685)
Hystricomorpha_b	ANCESTRAL SPECIES	46	ENSGT00950000183050.b.a	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102.o.a	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000158237	ENSGT00940000159561	ENSGT00390000011854	ENSGT00530000064222.b	ENSGT00940000161472	ENSGT00390000017666.p	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944	ENSGT00940000157159
Degu	MODERN SPECIES	48	TMEM260 (ENSODEG00000014526)	OTX2 (ENSODEG00000016325)	ENSODEG00000014704 #7	AP5M1 (ENSODEG00000014310) #8	NAA30 (ENSODEG00000014442) #9	CCDC198 (ENSODEG00000015422) #10	SLC35F4 (ENSODEG00000014001) #11	ENSODEG00000014617 #13	ENSODEG00000014244 #14	ENSODEG00000014881 #15	ENSODEG00000014309 #15	ENSODEG00000014880	ENSODEG00000014925	DACT1 (ENSODEG00000014574) #20	ENSODEG00000015435	DAAM1 (ENSODEG00000014128) #22	L3HYPDH (ENSODEG00000015887) #23	JKAMP (ENSODEG00000014669) #24	ENSODEG00000014803 ##26	ENSODEG00000014970	ENSODEG00000020245	ENSODEG00000020257	ENSODEG00000015513	ENSODEG00000014407	KTN1 (ENSODEG00000015972)	ENSODEG00000020182	ENSODEG00000020193	TBPL2 (ENSODEG00000015283)	ATG14 (ENSODEG00000014397)	ENSODEG00000014741	ENSODEG00000014683
Long-tailed chinchilla	MODERN SPECIES	173	ENSCLAG00000004270	OTX2 (ENSCLAG00000004839)	EXOC5 (ENSCLAG00000005217) #7	AP5M1 (ENSCLAG00000006373) #8	NAA30 (ENSCLAG00000002822) #9	CCDC198 (ENSCLAG00000002962) #10	SLC35F4 (ENSCLAG00000003156) #11	ARMH4 (ENSCLAG00000003534) #12	ACTR10 (ENSCLAG00000003957) #13	PSMA3 (ENSCLAG00000004169) #14	ENSCLAG00000003914 #15	TIMM9 (ENSCLAG00000004069)	KIAA0586 (ENSCLAG00000004355) #19	ENSCLAG00000005082	DACT1 (ENSCLAG00000005231) #20	DAAM1 (ENSCLAG00000005812) #22	GPR135 (ENSCLAG00000003808)	L3HYPDH (ENSCLAG00000003825) #23	JKAMP (ENSCLAG00000004418) #24	CCDC175 (ENSCLAG00000004873) #25	ENSCLAG00000005327 ##26	ENSCLAG00000004233	KTN1 (ENSCLAG00000004903)	ENSCLAG00000007765	TBPL2 (ENSCLAG00000013407)	ATG14 (ENSCLAG00000010991)	FBXO34 (ENSCLAG00000018001)
Naked mole-rat female	MODERN SPECIES	18	SLC35F4 (ENSHGLG00000002649) #11	ENSHGLG00000046462	ARMH4 (ENSHGLG00000002733) #12	ACTR10 (ENSHGLG00000002598) #13	ENSHGLG00000037877	ENSHGLG00000009085 #14	ENSHGLG00000036546	ARID4A (ENSHGLG00000001903) #15	ENSHGLG00000034425	ENSHGLG00000002378	ENSHGLG00000042053	KIAA0586 (ENSHGLG00000003054) #19	ENSHGLG00000037363	DACT1 (ENSHGLG00000001348) #20	ENSHGLG00000003874	DAAM1 (ENSHGLG00000009999) #22	GPR135 (ENSHGLG00000017696)	L3HYPDH (ENSHGLG00000014479) #23	JKAMP (ENSHGLG00000016840) #24	ENSHGLG00000036500 #25	RTN1 (ENSHGLG00000011293) ##26	ENSHGLG00000034621	ENSHGLG00000044183 ##26	ENSHGLG00000014070 #28	PCNX4 (ENSHGLG00000011665) #29	ENSHGLG00000014306 #30	ENSHGLG00000042703	PPM1A (ENSHGLG00000012982) #31	ENSHGLG00000010109 #32	SIX6 (ENSHGLG00000009630) #33	SIX1 (ENSHGLG00000042472) #34
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.b	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.b	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Suina	ANCESTRAL SPECIES	30	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000165313	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.b	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Pig	MODERN SPECIES		ENSSSCG00000052032	SLC35F4 (ENSSSCG00000005068) #11	ENSSSCG00000054505	ARMH4 (ENSSSCG00000005071) #12	ENSSSCG00000049460	ACTR10 (ENSSSCG00000022299) #13	PSMA3 (ENSSSCG00000005072) #14	ARID4A (ENSSSCG00000005073) #15	TOMM20L (ENSSSCG00000005075) #17	ENSSSCG00000027270	KIAA0586 (ENSSSCG00000005076) #19	ENSSSCG00000060230	DACT1 (ENSSSCG00000031856) #20	ENSSSCG00000005077	ENSSSCG00000050857	DAAM1 (ENSSSCG00000005078) #22	ENSSSCG00000044767	GPR135 (ENSSSCG00000032928)	L3HYPDH (ENSSSCG00000037854) #23	JKAMP (ENSSSCG00000034798) #24	CCDC175 (ENSSSCG00000027678) #25	RTN1 (ENSSSCG00000025013) #26	ENSSSCG00000039172	LRRC9 (ENSSSCG00000005081) #28	PCNX4 (ENSSSCG00000005082) #29	DHRS7 (ENSSSCG00000005083) #30	PPM1A (ENSSSCG00000005084) #31	C14orf39 (ENSSSCG00000005085) #32	SIX6 (ENSSSCG00000005086) #33	SIX1 (ENSSSCG00000005087) #34	SIX4 (ENSSSCG00000005089) #35
Chacoan peccary	MODERN SPECIES	785	TMEM260 (ENSCWAG00000007995)	ENSCWAG00000007953	EXOC5 (ENSCWAG00000007866) #7	AP5M1 (ENSCWAG00000007815) #8	NAA30 (ENSCWAG00000007778) #9	CCDC198 (ENSCWAG00000007702) #10	SLC35F4 (ENSCWAG00000007638) #11	ARMH4 (ENSCWAG00000007602) #12	ACTR10 (ENSCWAG00000007576) #13	PSMA3 (ENSCWAG00000007528) #14	ARID4A (ENSCWAG00000007451) #15	TOMM20L (ENSCWAG00000007414) #17	TIMM9 (ENSCWAG00000007380)	KIAA0586 (ENSCWAG00000005797) #19	DACT1 (ENSCWAG00000005675) #20	DAAM1 (ENSCWAG00000005580) #22	GPR135 (ENSCWAG00000005506)	L3HYPDH (ENSCWAG00000005482) #23	JKAMP (ENSCWAG00000005394) #24	CCDC175 (ENSCWAG00000005299) #25	ENSCWAG00000005267	RTN1 (ENSCWAG00000004885) #26	LRRC9 (ENSCWAG00000004604) #28	PCNX4 (ENSCWAG00000004544) #29	DHRS7 (ENSCWAG00000004509) #30	PPM1A (ENSCWAG00000004445) #31	ENSCWAG00000004419	C14orf39 (ENSCWAG00000004324) #32	SIX6 (ENSCWAG00000004290) #33	SIX1 (ENSCWAG00000004261) #34	SIX4 (ENSCWAG00000004237) #35
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Camelidae	ANCESTRAL SPECIES	8	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	32	OTX2 (ENSCDRG00005003304)	EXOC5 (ENSCDRG00005003347) #7	AP5M1 (ENSCDRG00005003511) #8	NAA30 (ENSCDRG00005003560) #9	CCDC198 (ENSCDRG00005003594) #10	SLC35F4 (ENSCDRG00005003636) #11	ARMH4 (ENSCDRG00005003753) #12	ACTR10 (ENSCDRG00005003798) #13	PSMA3 (ENSCDRG00005003904) #14	ARID4A (ENSCDRG00005003998) #15	TOMM20L (ENSCDRG00005004114) #17	TIMM9 (ENSCDRG00005004157)	KIAA0586 (ENSCDRG00005004214) #19	DACT1 (ENSCDRG00005004462) #20	ENSCDRG00005004515 #22	ENSCDRG00005004523 #22	GPR135 (ENSCDRG00005004537)	L3HYPDH (ENSCDRG00005004550) #23	JKAMP (ENSCDRG00005004587) #24	CCDC175 (ENSCDRG00005004700) #25	RTN1 (ENSCDRG00005004799) #26	LRRC9 (ENSCDRG00005005041) #28	PCNX4 (ENSCDRG00005005066) #29	DHRS7 (ENSCDRG00005005123) #30	PPM1A (ENSCDRG00005005182) #31	ENSCDRG00005005223	C14orf39 (ENSCDRG00005005239) #32	SIX6 (ENSCDRG00005005287) #33	SIX1 (ENSCDRG00005005305) #34	SIX4 (ENSCDRG00005005329) #35	MNAT1 (ENSCDRG00005005363) #36
Arabian camel	MODERN SPECIES	32	ENSCDRG00005003291	OTX2 (ENSCDRG00005003304)	EXOC5 (ENSCDRG00005003347) #7	AP5M1 (ENSCDRG00005003511) #8	NAA30 (ENSCDRG00005003560) #9	CCDC198 (ENSCDRG00005003594) #10	SLC35F4 (ENSCDRG00005003636) #11	ARMH4 (ENSCDRG00005003753) #12	ACTR10 (ENSCDRG00005003798) #13	PSMA3 (ENSCDRG00005003904) #14	ARID4A (ENSCDRG00005003998) #15	TOMM20L (ENSCDRG00005004114) #17	TIMM9 (ENSCDRG00005004157)	KIAA0586 (ENSCDRG00005004214) #19	DACT1 (ENSCDRG00005004462) #20	ENSCDRG00005004515 #22	ENSCDRG00005004523 #22	GPR135 (ENSCDRG00005004537)	L3HYPDH (ENSCDRG00005004550) #23	JKAMP (ENSCDRG00005004587) #24	CCDC175 (ENSCDRG00005004700) #25	RTN1 (ENSCDRG00005004799) #26	LRRC9 (ENSCDRG00005005041) #28	PCNX4 (ENSCDRG00005005066) #29	DHRS7 (ENSCDRG00005005123) #30	PPM1A (ENSCDRG00005005182) #31	ENSCDRG00005005223	C14orf39 (ENSCDRG00005005239) #32	SIX6 (ENSCDRG00005005287) #33	SIX1 (ENSCDRG00005005305) #34	SIX4 (ENSCDRG00005005329) #35
Alpaca	MODERN SPECIES	3205																DAAM1 (ENSVPAG00000005219) #22	L3HYPDH (ENSVPAG00000005222) #23	JKAMP (ENSVPAG00000005225) #24	CCDC175 (ENSVPAG00000005226) #25	RTN1 (ENSVPAG00000005228) #26	LRRC9 (ENSVPAG00000005231) #28	PCNX4 (ENSVPAG00000005234) #29	DHRS7 (ENSVPAG00000005239) #30
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Cetacea	ANCESTRAL SPECIES	2	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.h #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Monodontidae	ANCESTRAL SPECIES	5									ENSGT00550000074912.h #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000155618.fb.b	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Beluga whale	MODERN SPECIES	44	ENSDLEG00000006814	EXOC5 (ENSDLEG00000006751) #7	AP5M1 (ENSDLEG00000006746) #8	NAA30 (ENSDLEG00000006734) #9	CCDC198 (ENSDLEG00000006725) #10	SLC35F4 (ENSDLEG00000006679) #11	CUNH14orf37 (ENSDLEG00000006671) #12	ACTR10 (ENSDLEG00000006658) #13	PSMA3 (ENSDLEG00000006602) #14	ARID4A (ENSDLEG00000006563) #15	TOMM20L (ENSDLEG00000006554) #17	TIMM9 (ENSDLEG00000006549)	KIAA0586 (ENSDLEG00000006402) #19	DACT1 (ENSDLEG00000006372) #20	ENSDLEG00000006368	DAAM1 (ENSDLEG00000006328) #22	L3HYPDH (ENSDLEG00000006321) #23	JKAMP (ENSDLEG00000006315) #24	CCDC175 (ENSDLEG00000006277) #25	RTN1 (ENSDLEG00000006256) #26	LRRC9 (ENSDLEG00000006242) #28	PCNX4 (ENSDLEG00000006209) #29	DHRS7 (ENSDLEG00000006194) #30	PPM1A (ENSDLEG00000006180) #31	SIX6 (ENSDLEG00000006168) #33	SIX1 (ENSDLEG00000006164) #34	SIX4 (ENSDLEG00000006160) #35	TRMT5 (ENSDLEG00000006154) #37	MNAT1 (ENSDLEG00000006132) #36	TMEM30B (ENSDLEG00000006124)	PRKCH (ENSDLEG00000006106)
Narwhal	MODERN SPECIES	308	OTX2 (ENSMMNG00015019252)	ENSMMNG00015019287	EXOC5 (ENSMMNG00015019327) #7	AP5M1 (ENSMMNG00015019394) #8	NAA30 (ENSMMNG00015019499) #9	CCDC198 (ENSMMNG00015009993) #10	SLC35F4 (ENSMMNG00015010003) #11	ARMH4 (ENSMMNG00015010028) #12	ENSMMNG00015010047 #13	PSMA3 (ENSMMNG00015010058) #14	ARID4A (ENSMMNG00015010145) #15	KIAA0586 (ENSMMNG00015010227) #19	TIMM9 (ENSMMNG00015010333)	DACT1 (ENSMMNG00015010354) #20	ENSMMNG00015010373	DAAM1 (ENSMMNG00015010402) #22	GPR135 (ENSMMNG00015010436)	L3HYPDH (ENSMMNG00015010453) #23	JKAMP (ENSMMNG00015010475) #24	CCDC175 (ENSMMNG00015010518) #25	RTN1 (ENSMMNG00015010576) #26	LRRC9 (ENSMMNG00015010630) #28	PCNX4 (ENSMMNG00015010658) #29	DHRS7 (ENSMMNG00015010681) #30	PPM1A (ENSMMNG00015010711) #31	C14orf39 (ENSMMNG00015010738) #32	SIX6 (ENSMMNG00015010771) #33	SIX1 (ENSMMNG00015010788) #34	SIX4 (ENSMMNG00015010804) #35	MNAT1 (ENSMMNG00015010832) #36	TRMT5 (ENSMMNG00015010858) #37
Vaquita	MODERN SPECIES	11	PELI2 (ENSPSNG00000007728)	TMEM260 (ENSPSNG00000007769)	OTX2 (ENSPSNG00000007834)	EXOC5 (ENSPSNG00000007938) #7	AP5M1 (ENSPSNG00000008044) #8	NAA30 (ENSPSNG00000008083) #9	CCDC198 (ENSPSNG00000008124) #10	SLC35F4 (ENSPSNG00000008233) #11	ARMH4 (ENSPSNG00000008345) #12	ACTR10 (ENSPSNG00000008378) #13	ENSPSNG00000008426 #14	ARID4A (ENSPSNG00000008518) #15	TIMM9 (ENSPSNG00000008723)	KIAA0586 (ENSPSNG00000008812) #19	DACT1 (ENSPSNG00000009078) #20	DAAM1 (ENSPSNG00000009202) #22	ENSPSNG00000009236	L3HYPDH (ENSPSNG00000009297) #23	JKAMP (ENSPSNG00000009382) #24	CCDC175 (ENSPSNG00000009510) #25	RTN1 (ENSPSNG00000009742) #26	LRRC9 (ENSPSNG00000010083) #28	PCNX4 (ENSPSNG00000010774) #29	DHRS7 (ENSPSNG00000010883) #30	PPM1A (ENSPSNG00000010968) #31	C14orf39 (ENSPSNG00000011133) #32	SIX6 (ENSPSNG00000011302) #33	SIX1 (ENSPSNG00000011343) #34	SIX4 (ENSPSNG00000011386) #35	MNAT1 (ENSPSNG00000011449) #36	TRMT5 (ENSPSNG00000011513) #37
Dolphin	MODERN SPECIES	3100																DAAM1 (ENSTTRG00000001276) #22
Sperm whale	MODERN SPECIES	2	PELI2 (ENSPCTG00005022734)	TMEM260 (ENSPCTG00005022736)	OTX2 (ENSPCTG00005022740)	EXOC5 (ENSPCTG00005022744) #7	AP5M1 (ENSPCTG00005022748) #8	NAA30 (ENSPCTG00005022750) #9	CCDC198 (ENSPCTG00005022752) #10	SLC35F4 (ENSPCTG00005022755) #11	ARMH4 (ENSPCTG00005022756) #12	ACTR10 (ENSPCTG00005022758) #13	ENSPCTG00005005585 #14	ARID4A (ENSPCTG00005005643) #15	TIMM9 (ENSPCTG00005005709)	KIAA0586 (ENSPCTG00005005784) #19	DACT1 (ENSPCTG00005005972) #20	DAAM1 (ENSPCTG00005006033) #22	L3HYPDH (ENSPCTG00005006127) #23	JKAMP (ENSPCTG00005006188) #24	CCDC175 (ENSPCTG00005006268) #25	RTN1 (ENSPCTG00005006386) #26	ENSPCTG00005006692	LRRC9 (ENSPCTG00005006731) #28	PCNX4 (ENSPCTG00005006953) #29	DHRS7 (ENSPCTG00005007007) #30	PPM1A (ENSPCTG00005007048) #31	C14orf39 (ENSPCTG00005007109) #32	SIX6 (ENSPCTG00005007177) #33	SIX1 (ENSPCTG00005007198) #34	MNAT1 (ENSPCTG00005007267)	TRMT5 (ENSPCTG00005007560) #37	ENSPCTG00005007592
Blue whale	MODERN SPECIES	11	PELI2 (ENSBMSG00010006118)	TMEM260 (ENSBMSG00010006197)	ENSBMSG00010006244	EXOC5 (ENSBMSG00010006288) #7	NAA30 (ENSBMSG00010006423) #9	CCDC198 (ENSBMSG00010006460) #10	SLC35F4 (ENSBMSG00010006486) #11	ARMH4 (ENSBMSG00010006512) #12	ACTR10 (ENSBMSG00010006532) #13	PSMA3 (ENSBMSG00010006547) #14	ARID4A (ENSBMSG00010006597) #15	TOMM20L (ENSBMSG00010006639) #17	TIMM9 (ENSBMSG00010006673)	KIAA0586 (ENSBMSG00010006894) #19	DACT1 (ENSBMSG00010007147) #20	DAAM1 (ENSBMSG00010007204) #22	GPR135 (ENSBMSG00010007228)	L3HYPDH (ENSBMSG00010007243) #23	JKAMP (ENSBMSG00010007274) #24	CCDC175 (ENSBMSG00010007322) #25	RTN1 (ENSBMSG00010007376) #26	ENSBMSG00010007407	LRRC9 (ENSBMSG00010007533) #28	PCNX4 (ENSBMSG00010007679) #29	DHRS7 (ENSBMSG00010007688) #30	PPM1A (ENSBMSG00010007693) #31	C14orf39 (ENSBMSG00010007715) #32	SIX6 (ENSBMSG00010007733) #33	SIX1 (ENSBMSG00010007741) #34	SIX4 (ENSBMSG00010007749) #35	MNAT1 (ENSBMSG00010007760) #36
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Bovinae	ANCESTRAL SPECIES	11	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Bos	ANCESTRAL SPECIES	13	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.b	ENSGT00940000156452 #22	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982
Wild yak	MODERN SPECIES	1217							ENSBMUG00000001752	ARMH4 (ENSBMUG00000001687) #12	ACTR10 (ENSBMUG00000001660) #13	PSMA3 (ENSBMUG00000001636) #14	ARID4A (ENSBMUG00000001579) #15	TOMM20L (ENSBMUG00000001504) #17	TIMM9 (ENSBMUG00000001484)	KIAA0586 (ENSBMUG00000001435) #19	DACT1 (ENSBMUG00000000916) #20	DAAM1 (ENSBMUG00000000880) #22
Domestic yak	MODERN SPECIES	2	AP5M1 (ENSBGRG00000005692) #8	NAA30 (ENSBGRG00000005732) #9	CCDC198 (ENSBGRG00000005763) #10	SLC35F4 (ENSBGRG00000005871) #11	ARMH4 (ENSBGRG00000005926) #12	ACTR10 (ENSBGRG00000006018) #13	PSMA3 (ENSBGRG00000006071) #14	ARID4A (ENSBGRG00000006268) #15	TOMM20L (ENSBGRG00000006358) #17	TIMM9 (ENSBGRG00000006403)	KIAA0586 (ENSBGRG00000006467) #19	ENSBGRG00000006612	ENSBGRG00000006621	DACT1 (ENSBGRG00000006643) #20	ENSBGRG00000006708	DAAM1 (ENSBGRG00000006735) #22	L3HYPDH (ENSBGRG00000006914) #23	JKAMP (ENSBGRG00000006967) #24	CCDC175 (ENSBGRG00000007149) #25	RTN1 (ENSBGRG00000007425) #26	LRRC9 (ENSBGRG00000007630) #28	ENSBGRG00000007786	PCNX4 (ENSBGRG00000007801) #29	DHRS7 (ENSBGRG00000007903) #30	PPM1A (ENSBGRG00000008044) #31	C14orf39 (ENSBGRG00000008306) #32	SIX6 (ENSBGRG00000008595) #33	SIX1 (ENSBGRG00000008619) #34	SIX4 (ENSBGRG00000008677) #35	MNAT1 (ENSBGRG00000008722) #36	TRMT5 (ENSBGRG00000008811) #37
Bos_b	ANCESTRAL SPECIES	11	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Hybrid Bos Indicus	MODERN SPECIES	1	OTX2 (ENSBIXG00005010652)	EXOC5 (ENSBIXG00005010619) #7	AP5M1 (ENSBIXG00005000698) #8	NAA30 (ENSBIXG00005010568) #9	CCDC198 (ENSBIXG00005010538) #10	SLC35F4 (ENSBIXG00005010483) #11	ARMH4 (ENSBIXG00005010427) #12	ENSBIXG00005010405	ACTR10 (ENSBIXG00005000870) #13	PSMA3 (ENSBIXG00005010386) #14	ARID4A (ENSBIXG00005010327) #15	TOMM20L (ENSBIXG00005010278) #17	TIMM9 (ENSBIXG00005010269)	KIAA0586 (ENSBIXG00005010220) #19	DACT1 (ENSBIXG00005010128) #20	DAAM1 (ENSBIXG00005010058) #22	ENSBIXG00005010009	GPR135 (ENSBIXG00005009994)	L3HYPDH (ENSBIXG00005009991) #23	JKAMP (ENSBIXG00005000723) #24	CCDC175 (ENSBIXG00005009913) #25	RTN1 (ENSBIXG00005006100) #26	LRRC9 (ENSBIXG00005000617) #28	PCNX4 (ENSBIXG00005009798) #29	DHRS7 (ENSBIXG00005009756) #30	ENSBIXG00005009707	ENSBIXG00005009696 #31	C14orf39 (ENSBIXG00005009629) #32	SIX6 (ENSBIXG00005009549) #33	SIX1 (ENSBIXG00005009529) #34	SIX4 (ENSBIXG00005009512) #35
Cow	MODERN SPECIES	1	ENSBTAG00000051793	EXOC5 (ENSBTAG00000013042) #7	AP5M1 (ENSBTAG00000013043) #8	NAA30 (ENSBTAG00000012998) #9	CCDC198 (ENSBTAG00000009862) #10	SLC35F4 (ENSBTAG00000006341) #11	ARMH4 (ENSBTAG00000020880) #12	ACTR10 (ENSBTAG00000014392) #13	PSMA3 (ENSBTAG00000002808) #14	ARID4A (ENSBTAG00000018898) #15	TOMM20L (ENSBTAG00000052431) #17	TIMM9 (ENSBTAG00000010503)	KIAA0586 (ENSBTAG00000004631) #19	DACT1 (ENSBTAG00000019421) #20	ENSBTAG00000045799	DAAM1 (ENSBTAG00000005984) #22	GPR135 (ENSBTAG00000003370)	L3HYPDH (ENSBTAG00000030824) #23	JKAMP (ENSBTAG00000003371) #24	ENSBTAG00000051848	RTN1 (ENSBTAG00000011451) #26	LRRC9 (ENSBTAG00000003090) #28	PCNX4 (ENSBTAG00000014096) #29	DHRS7 (ENSBTAG00000020729) #30	PPM1A (ENSBTAG00000018127) #31	SIX6 (ENSBTAG00000013035) #33	SIX1 (ENSBTAG00000012139) #34	SIX4 (ENSBTAG00000049091) #35	MNAT1 (ENSBTAG00000030801) #36	TRMT5 (ENSBTAG00000011796) #37	SLC38A6 (ENSBTAG00000007931)
American bison	MODERN SPECIES	3170	EXOC5 (ENSBBBG00000020012) #7	AP5M1 (ENSBBBG00000020032) #8	ENSBBBG00000020043 #9	CCDC198 (ENSBBBG00000005091) #10	SLC35F4 (ENSBBBG00000005428) #11	ENSBBBG00000020068	ARMH4 (ENSBBBG00000008369) #12	ACTR10 (ENSBBBG00000020095) #13	PSMA3 (ENSBBBG00000020117) #14	ARID4A (ENSBBBG00000020226) #15	TOMM20L (ENSBBBG00000005467) #17	TIMM9 (ENSBBBG00000020244)	KIAA0586 (ENSBBBG00000005496) #19	ENSBBBG00000020348	ENSBBBG00000020350	DAAM1 (ENSBBBG00000000691) #22	L3HYPDH (ENSBBBG00000000671) #23	JKAMP (ENSBBBG00000000637) #24	CCDC175 (ENSBBBG00000000613) #25	RTN1 (ENSBBBG00000000525) #26	LRRC9 (ENSBBBG00000005533) #28	PCNX4 (ENSBBBG00000020502) #29	DHRS7 (ENSBBBG00000020509) #30	ENSBBBG00000005539 #31	C14orf39 (ENSBBBG00000020548) #32	SIX6 (ENSBBBG00000020562) #33	SIX1 (ENSBBBG00000020577) #34	SIX4 (ENSBBBG00000000507) #35	MNAT1 (ENSBBBG00000020603) #36	TRMT5 (ENSBBBG00000005561) #37	SLC38A6 (ENSBBBG00000020645)
Caprinae	ANCESTRAL SPECIES	11	ENSGT00940000155014.rb.a	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832.c #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Goat	MODERN SPECIES	1	OTX2 (ENSCHIG00000011465)	EXOC5 (ENSCHIG00000021413) #7	AP5M1 (ENSCHIG00000017238) #8	NAA30 (ENSCHIG00000014880) #9	CCDC198 (ENSCHIG00000027108) #10	SLC35F4 (ENSCHIG00000023214) #11	ARMH4 (ENSCHIG00000011182) #12	ACTR10 (ENSCHIG00000025582) #13	PSMA3 (ENSCHIG00000016692) #14	ARID4A (ENSCHIG00000021589) #15	TOMM20L (ENSCHIG00000023817) #17	TIMM9 (ENSCHIG00000020353)	KIAA0586 (ENSCHIG00000022943) #19	DACT1 (ENSCHIG00000020832) #20	ENSCHIG00000003466	DAAM1 (ENSCHIG00000000665) #22	GPR135 (ENSCHIG00000014842)	L3HYPDH (ENSCHIG00000019611) #23	JKAMP (ENSCHIG00000021867) #24	CCDC175 (ENSCHIG00000022114) #25	ENSCHIG00000016341 ##26	ENSCHIG00000000816	ENSCHIG00000003392 ##26	LRRC9 (ENSCHIG00000025206) #28	PCNX4 (ENSCHIG00000027192) #29	DHRS7 (ENSCHIG00000026336) #30	ENSCHIG00000006564	ENSCHIG00000022625 #31	SIX6 (ENSCHIG00000017541) #33	SIX1 (ENSCHIG00000024896) #34	SIX4 (ENSCHIG00000012309) #35
Rambouillet Sheep	MODERN SPECIES	23	ENSOARG00020020321	SLC35F4 (ENSOARG00020020338) #11	ARMH4 (ENSOARG00020020459) #12	ENSOARG00020020575 ##17	ACTR10 (ENSOARG00020020638) #13	PSMA3 (ENSOARG00020020746) #14	ARID4A (ENSOARG00020020842) #15	TOMM20L (ENSOARG00020021304) #17	TIMM9 (ENSOARG00020007740)	DACT1 (ENSOARG00020008146) #20	ENSOARG00020008208	ENSOARG00020008239	ENSOARG00020008270	ENSOARG00020008316	ENSOARG00020008342	DAAM1 (ENSOARG00020008441) #22	L3HYPDH (ENSOARG00020008883) #23	JKAMP (ENSOARG00020008977) #24	CCDC175 (ENSOARG00020009081) #25	RTN1 (ENSOARG00020009209) #26	ENSOARG00020009459	LRRC9 (ENSOARG00020009484) #28	PCNX4 (ENSOARG00020009627) #29	DHRS7 (ENSOARG00020009716) #30	ENSOARG00020009767	ENSOARG00020009798 #31	C14orf39 (ENSOARG00020009961) #32	SIX6 (ENSOARG00020010325) #33	SIX1 (ENSOARG00020010359) #34	SIX4 (ENSOARG00020010405) #35	MNAT1 (ENSOARG00020010470) #36
Siberian musk deer	MODERN SPECIES	259																DAAM1 (ENSMMSG00000008136) #22	GPR135 (ENSMMSG00000008233)	L3HYPDH (ENSMMSG00000008244) #23	JKAMP (ENSMMSG00000008274) #24
Yarkand deer	MODERN SPECIES	3	NAA30 (ENSCHYG00000006525) #9	CCDC198 (ENSCHYG00000006562) #10	SLC35F4 (ENSCHYG00000006593) #11	ENSCHYG00000006672	ARMH4 (ENSCHYG00000006690) #12	ENSCHYG00000006747	ENSCHYG00000006780	ACTR10 (ENSCHYG00000006808) #13	PSMA3 (ENSCHYG00000006862) #14	ARID4A (ENSCHYG00000006944) #15	TOMM20L (ENSCHYG00000007060) #17	TIMM9 (ENSCHYG00000007088)	KIAA0586 (ENSCHYG00000007211) #19	DACT1 (ENSCHYG00000007708) #20	ENSCHYG00000007730	DAAM1 (ENSCHYG00000007778) #22	ENSCHYG00000008040	L3HYPDH (ENSCHYG00000008071) #23	GPR135 (ENSCHYG00000008152)	JKAMP (ENSCHYG00000008180) #24	CCDC175 (ENSCHYG00000008268) #25	RTN1 (ENSCHYG00000008376) #26	LRRC9 (ENSCHYG00000008495) #28	PCNX4 (ENSCHYG00000008766) #29	DHRS7 (ENSCHYG00000008948) #30	PPM1A (ENSCHYG00000009103) #31	SIX6 (ENSCHYG00000009294) #33	SIX1 (ENSCHYG00000009332) #34	SIX4 (ENSCHYG00000009371) #35	MNAT1 (ENSCHYG00000009455) #36	TRMT5 (ENSCHYG00000009648) #37
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.b	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Carnivora	ANCESTRAL SPECIES		ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Caniformia	ANCESTRAL SPECIES	15	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Ursidae	ANCESTRAL SPECIES	10	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.d #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Ursus	ANCESTRAL SPECIES	11	ENSGT00390000004717	ENSGT00940000159502	ENSGT00940000156065	ENSGT00390000013444.a.a	ENSGT00390000008666	ENSGT00940000154859	ENSGT01020000230346.A	ENSGT00390000007753.b	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00940000155517	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	100	BMP4 (ENSUMAG00000015839)	DDHD1 (ENSUMAG00000015721)	ENSUMAG00000015699	FERMT2 (ENSUMAG00000014783)	GNPNAT1 (ENSUMAG00000014715)	STYX (ENSUMAG00000014548)	PSMC6 (ENSUMAG00000014516)	ERO1A (ENSUMAG00000014509)	TXNDC16 (ENSUMAG00000014494)	PTGER2 (ENSUMAG00000014471)	NID2 (ENSUMAG00000014131)	RTRAF (ENSUMAG00000014073)	GNG2 (ENSUMAG00000014066)	FRMD6 (ENSUMAG00000013996)	ENSUMAG00000013984 #22	ENSUMAG00000013973 #22	L3HYPDH (ENSUMAG00000013969) #23	JKAMP (ENSUMAG00000013966) #24	CCDC175 (ENSUMAG00000013957) #25	ENSUMAG00000013952 #26	LRRC9 (ENSUMAG00000013823) #28	ENSUMAG00000013796 #29	ENSUMAG00000013787 #29	DHRS7 (ENSUMAG00000013783) #30	PPM1A (ENSUMAG00000013779) #31	ENSUMAG00000013767	SIX6 (ENSUMAG00000013764) #33	SIX1 (ENSUMAG00000013749) #34	ENSUMAG00000013745 #35	MNAT1 (ENSUMAG00000013740) #36	TRMT5 (ENSUMAG00000013736) #37
Polar bear	MODERN SPECIES	100	CDKN3 (ENSUMAG00000015850)	BMP4 (ENSUMAG00000015839)	DDHD1 (ENSUMAG00000015721)	ENSUMAG00000015699	FERMT2 (ENSUMAG00000014783)	GNPNAT1 (ENSUMAG00000014715)	STYX (ENSUMAG00000014548)	PSMC6 (ENSUMAG00000014516)	ERO1A (ENSUMAG00000014509)	TXNDC16 (ENSUMAG00000014494)	PTGER2 (ENSUMAG00000014471)	NID2 (ENSUMAG00000014131)	RTRAF (ENSUMAG00000014073)	GNG2 (ENSUMAG00000014066)	FRMD6 (ENSUMAG00000013996)	ENSUMAG00000013984 #22	ENSUMAG00000013973 #22	L3HYPDH (ENSUMAG00000013969) #23	JKAMP (ENSUMAG00000013966) #24	CCDC175 (ENSUMAG00000013957) #25	ENSUMAG00000013952 #26	LRRC9 (ENSUMAG00000013823) #28	ENSUMAG00000013796 #29	ENSUMAG00000013787 #29	DHRS7 (ENSUMAG00000013783) #30	PPM1A (ENSUMAG00000013779) #31	ENSUMAG00000013767	SIX6 (ENSUMAG00000013764) #33	SIX1 (ENSUMAG00000013749) #34	ENSUMAG00000013745 #35	MNAT1 (ENSUMAG00000013740) #36
American black bear	MODERN SPECIES	2619																DAAM1 (ENSUAMG00000005208) #22	GPR135 (ENSUAMG00000005122)	L3HYPDH (ENSUAMG00000005120) #23	JKAMP (ENSUAMG00000005116) #24
Giant Panda	MODERN SPECIES	5	ENSAMEG00000002332	EXOC5 (ENSAMEG00000002337) #7	AP5M1 (ENSAMEG00000002388) #8	ENSAMEG00000002401	NAA30 (ENSAMEG00000030653) #9	CCDC198 (ENSAMEG00000002423) #10	SLC35F4 (ENSAMEG00000002428) #11	ARMH4 (ENSAMEG00000002447) #12	ACTR10 (ENSAMEG00000002459) #13	PSMA3 (ENSAMEG00000002498) #14	ARID4A (ENSAMEG00000002532) #15	TOMM20L (ENSAMEG00000002588) #17	TIMM9 (ENSAMEG00000029236)	KIAA0586 (ENSAMEG00000002590) #19	DACT1 (ENSAMEG00000031376) #20	DAAM1 (ENSAMEG00000002672) #22	GPR135 (ENSAMEG00000028602)	L3HYPDH (ENSAMEG00000002811) #23	JKAMP (ENSAMEG00000002820) #24	CCDC175 (ENSAMEG00000002824) #25	RTN1 (ENSAMEG00000002842) #26	LRRC9 (ENSAMEG00000002875) #28	PCNX4 (ENSAMEG00000002894) #29	DHRS7 (ENSAMEG00000002913) #30	PPM1A (ENSAMEG00000002928) #31	C14orf39 (ENSAMEG00000002940) #32	SIX6 (ENSAMEG00000002957) #33	SIX1 (ENSAMEG00000002965) #34	SIX4 (ENSAMEG00000030367) #35	MNAT1 (ENSAMEG00000002974) #36	TRMT5 (ENSAMEG00000002979) #37
Mustelinae	ANCESTRAL SPECIES	14	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
American mink	MODERN SPECIES		EXOC5 (ENSNVIG00000005107) #7	AP5M1 (ENSNVIG00000005136) #8	NAA30 (ENSNVIG00000005154) #9	ENSNVIG00000005174	CCDC198 (ENSNVIG00000005185) #10	SLC35F4 (ENSNVIG00000005200) #11	ARMH4 (ENSNVIG00000005230) #12	ACTR10 (ENSNVIG00000005257) #13	PSMA3 (ENSNVIG00000005285) #14	ARID4A (ENSNVIG00000005417) #15	TOMM20L (ENSNVIG00000005638) #17	TIMM9 (ENSNVIG00000005646)	KIAA0586 (ENSNVIG00000005684) #19	DACT1 (ENSNVIG00000005916) #20	ENSNVIG00000005940	DAAM1 (ENSNVIG00000005958) #22	GPR135 (ENSNVIG00000006000)	L3HYPDH (ENSNVIG00000006003) #23	JKAMP (ENSNVIG00000006023) #24	CCDC175 (ENSNVIG00000006070) #25	RTN1 (ENSNVIG00000006123) #26	LRRC9 (ENSNVIG00000006214) #28	PCNX4 (ENSNVIG00000006277) #29	ENSNVIG00000006318	DHRS7 (ENSNVIG00000006325) #30	PPM1A (ENSNVIG00000006366) #31	C14orf39 (ENSNVIG00000006397) #32	SIX6 (ENSNVIG00000006422) #33	SIX1 (ENSNVIG00000006437) #34	SIX4 (ENSNVIG00000006443) #35	MAT1 (ENSNVIG00000006449) #36
Ferret	MODERN SPECIES	164	OTX2 (ENSMPUG00000005923)	EXOC5 (ENSMPUG00000005928) #7	AP5M1 (ENSMPUG00000005943) #8	NAA30 (ENSMPUG00000005958) #9	ENSMPUG00000005967	CCDC198 (ENSMPUG00000005974) #10	ENSMPUG00000019637	SLC35F4 (ENSMPUG00000005988) #11	ARMH4 (ENSMPUG00000006024) #12	ACTR10 (ENSMPUG00000006030) #13	PSMA3 (ENSMPUG00000006126) #14	ENSMPUG00000019638	ARID4A (ENSMPUG00000006137) #15	KIAA0586 (ENSMPUG00000006154) #19	DACT1 (ENSMPUG00000006171) #20	DAAM1 (ENSMPUG00000006204) #22	L3HYPDH (ENSMPUG00000006223) #23	JKAMP (ENSMPUG00000006232) #24	CCDC175 (ENSMPUG00000006239) #25	RTN1 (ENSMPUG00000006252) #26	LRRC9 (ENSMPUG00000006265) #28	PCNX4 (ENSMPUG00000006290) #29	DHRS7 (ENSMPUG00000006299) #30	PPM1A (ENSMPUG00000006311) #31	ENSMPUG00000006319	C14orf39 (ENSMPUG00000006328) #32	SIX6 (ENSMPUG00000006406) #33	SIX1 (ENSMPUG00000006412) #34	ENSMPUG00000006420	SIX4 (ENSMPUG00000006423) #35	MNAT1 (ENSMPUG00000006428) #36
Canidae	ANCESTRAL SPECIES	4	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.a #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00950000183027.a.b.a	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000155014	ENSGT00510000047486.f.a	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912.a #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00950000183027.a.b.a	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36
Dog	MODERN SPECIES	36	EXOC5 (ENSCAFG00845017251) #7	AP5M1 (ENSCAFG00845017449) #8	NAA30 (ENSCAFG00845017715) #9	CCDC198 (ENSCAFG00845017758) #10	SLC35F4 (ENSCAFG00845017859) #11	ENSCAFG00845018031	ARMH4 (ENSCAFG00845018091) #12	ENSCAFG00845018183	ACTR10 (ENSCAFG00845018264) #13	PSMA3 (ENSCAFG00845018487) #14	ARID4A (ENSCAFG00845018674) #15	TOMM20L (ENSCAFG00845018941) #17	TIMM9 (ENSCAFG00845019018)	KIAA0586 (ENSCAFG00845019145) #19	DACT1 (ENSCAFG00845019686) #20	DAAM1 (ENSCAFG00845019817) #22	GPR135 (ENSCAFG00845020090)	JKAMP (ENSCAFG00845020160) #24	L3HYPDH (ENSCAFG00845020358) #23	CCDC175 (ENSCAFG00845020417) #25	RTN1 (ENSCAFG00845020712) #26	LRRC9 (ENSCAFG00845021147) #28	PCNX4 (ENSCAFG00845021996) #29	DHRS7 (ENSCAFG00845022116) #30	PPM1A (ENSCAFG00845022268) #31	C14orf39 (ENSCAFG00845022392) #32	SIX6 (ENSCAFG00845022479) #33	SIX1 (ENSCAFG00845022548) #34	SIX4 (ENSCAFG00845022621) #35	MNAT1 (ENSCAFG00845022729) #36	ENSCAFG00845022837
Dingo	MODERN SPECIES	161	AP5M1 (ENSCAFG00020009041) #8	NAA30 (ENSCAFG00020009034) #9	CCDC198 (ENSCAFG00020009029) #10	SLC35F4 (ENSCAFG00020008987) #11	ENSCAFG00020008949	ENSCAFG00020008947	ENSCAFG00020008939	ARMH4 (ENSCAFG00020008905) #12	ACTR10 (ENSCAFG00020008899) #13	PSMA3 (ENSCAFG00020008843) #14	ARID4A (ENSCAFG00020008690) #15	TOMM20L (ENSCAFG00020008677) #17	TIMM9 (ENSCAFG00020008668)	KIAA0586 (ENSCAFG00020008489) #19	DACT1 (ENSCAFG00020008439) #20	DAAM1 (ENSCAFG00020008393) #22	L3HYPDH (ENSCAFG00020008358) #23	JKAMP (ENSCAFG00020008348) #24	CCDC175 (ENSCAFG00020008321) #25	RTN1 (ENSCAFG00020008298) #26	LRRC9 (ENSCAFG00020008180) #28	PCNX4 (ENSCAFG00020008166) #29	DHRS7 (ENSCAFG00020008153) #30	ENSCAFG00020008132	PPM1A (ENSCAFG00020008123) #31	C14orf39 (ENSCAFG00020008114) #32	SIX6 (ENSCAFG00020008085) #33	ENSCAFG00020008082	SIX1 (ENSCAFG00020008070) #34	SIX4 (ENSCAFG00020008062) #35	ENSCAFG00020008059
Red fox	MODERN SPECIES	33	EXOC5 (ENSVVUG00000029570) #7	AP5M1 (ENSVVUG00000029565) #8	NAA30 (ENSVVUG00000029563) #9	CCDC198 (ENSVVUG00000029562) #10	SLC35F4 (ENSVVUG00000029560) #11	ENSVVUG00000029558	ENSVVUG00000029555	ENSVVUG00000029554	ARMH4 (ENSVVUG00000029553) #12	ACTR10 (ENSVVUG00000029550) #13	PSMA3 (ENSVVUG00000029547) #14	ARID4A (ENSVVUG00000029542) #15	TIMM9 (ENSVVUG00000029539)	KIAA0586 (ENSVVUG00000029533) #19	ENSVVUG00000029527 #20	DAAM1 (ENSVVUG00000029522) #22	GPR135 (ENSVVUG00000029521)	L3HYPDH (ENSVVUG00000029520) #23	JKAMP (ENSVVUG00000029519) #24	CCDC175 (ENSVVUG00000029518) #25	RTN1 (ENSVVUG00000029515) #26	LRRC9 (ENSVVUG00000029507) #28	PCNX4 (ENSVVUG00000029499) #29	DHRS7 (ENSVVUG00000029494) #30	ENSVVUG00000029492	PPM1A (ENSVVUG00000029490) #31	CUNH14orf39 (ENSVVUG00000029483) #32	ENSVVUG00000029482	SIX6 (ENSVVUG00000029480) #33	SIX1 (ENSVVUG00000029476) #34	SIX4 (ENSVVUG00000029473) #35
Felidae	ANCESTRAL SPECIES	1	ENSGT00550000074828.a.g.a.i	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665.t #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00390000008820.e.b	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000153096.b.c.b.b.f	ENSGT00940000160820 #35
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665.s #9	ENSGT00390000005665.t #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00390000008820.e.b	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000153096.b.c.b.b.f	ENSGT00940000160820 #35
Tiger	MODERN SPECIES	490								ARMH4 (ENSPTIG00000007751) #12	ACTR10 (ENSPTIG00000007732) #13	PSMA3 (ENSPTIG00000007709) #14	ARID4A (ENSPTIG00000007597) #15	TOMM20L (ENSPTIG00000007549) #17	TIMM9 (ENSPTIG00000007524)	KIAA0586 (ENSPTIG00000007321) #19	ENSPTIG00000007231 #20	DAAM1 (ENSPTIG00000007147) #22	ENSPTIG00000007113	JKAMP (ENSPTIG00000007089) #24	CCDC175 (ENSPTIG00000007051) #25	ENSPTIG00000007034	RTN1 (ENSPTIG00000006987) #26	LRRC9 (ENSPTIG00000006940) #28	PCNX4 (ENSPTIG00000006892) #29	DHRS7 (ENSPTIG00000006869) #30	PPM1A (ENSPTIG00000006846) #31	C14orf39 (ENSPTIG00000006823) #32	SIX6 (ENSPTIG00000006811) #33	ENSPTIG00000006803 #34	SIX4 (ENSPTIG00000006797) #35	MNAT1 (ENSPTIG00000006766) #36	TRMT5 (ENSPTIG00000006744) #37
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665.s #9	ENSGT00390000005665.t #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00390000008820.e.b	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000153096.b.c.b.b.f	ENSGT00940000160820 #35
leopard	MODERN SPECIES	21	OTX2 (ENSPPRG00000015487)	EXOC5 (ENSPPRG00000023159) #7	AP5M1 (ENSPPRG00000022649) #8	NAA30 (ENSPPRG00000000155) #9	ENSPPRG00000000305 #9	CCDC198 (ENSPPRG00000001064) #10	SLC35F4 (ENSPPRG00000001908) #11	ARMH4 (ENSPPRG00000002270) #12	ACTR10 (ENSPPRG00000002823) #13	PSMA3 (ENSPPRG00000004064) #14	ARID4A (ENSPPRG00000009142) #15	TOMM20L (ENSPPRG00000009498) #17	TIMM9 (ENSPPRG00000010204)	KIAA0586 (ENSPPRG00000019869) #19	DACT1 (ENSPPRG00000021095) #20	DAAM1 (ENSPPRG00000000454) #22	L3HYPDH (ENSPPRG00000001455) #23	JKAMP (ENSPPRG00000002938) #24	CCDC175 (ENSPPRG00000003157) #25	ENSPPRG00000003344	RTN1 (ENSPPRG00000004929) #26	LRRC9 (ENSPPRG00000006439) #28	PCNX4 (ENSPPRG00000008286) #29	DHRS7 (ENSPPRG00000009265) #30	PPM1A (ENSPPRG00000009447) #31	C14orf39 (ENSPPRG00000009900) #32	SIX6 (ENSPPRG00000010088) #33	SIX1 (ENSPPRG00000010857) #34	ENSPPRG00000011395	SIX4 (ENSPPRG00000011587) #35	ENSPPRG00000012270 #35
lion	MODERN SPECIES	6	OTX2 (ENSPLOG00000004396)	EXOC5 (ENSPLOG00000004425) #7	AP5M1 (ENSPLOG00000004456) #8	NAA30 (ENSPLOG00000004476) #9	CCDC198 (ENSPLOG00000004488) #10	ENSPLOG00000004497	SLC35F4 (ENSPLOG00000004506) #11	ARMH4 (ENSPLOG00000004525) #12	ACTR10 (ENSPLOG00000004544) #13	PSMA3 (ENSPLOG00000004568) #14	ARID4A (ENSPLOG00000004625) #15	TOMM20L (ENSPLOG00000004696) #17	TIMM9 (ENSPLOG00000004712)	KIAA0586 (ENSPLOG00000004833) #19	DACT1 (ENSPLOG00000004973) #20	DAAM1 (ENSPLOG00000005025) #22	GPR135 (ENSPLOG00000005091)	L3HYPDH (ENSPLOG00000005108) #23	JKAMP (ENSPLOG00000005132) #24	CCDC175 (ENSPLOG00000005168) #25	ENSPLOG00000005202	RTN1 (ENSPLOG00000005240) #26	LRRC9 (ENSPLOG00000005342) #28	PCNX4 (ENSPLOG00000005499) #29	DHRS7 (ENSPLOG00000005526) #30	ENSPLOG00000005566 #31	C14orf39 (ENSPLOG00000005611) #32	SIX6 (ENSPLOG00000005656) #33	SIX1 (ENSPLOG00000007543) #34	SIX4 (ENSPLOG00000007573) #35	MNAT1 (ENSPLOG00000007634) #36
Cat	MODERN SPECIES	237	ENSFCAG00000042008	OTX2 (ENSFCAG00000024521)	EXOC5 (ENSFCAG00000002045) #7	AP5M1 (ENSFCAG00000002046) #8	NAA30 (ENSFCAG00000023358) #9	CCDC198 (ENSFCAG00000043889) #10	SLC35F4 (ENSFCAG00000001291) #11	ARMH4 (ENSFCAG00000001858) #12	ACTR10 (ENSFCAG00000045749) #13	PSMA3 (ENSFCAG00000025134) #14	ARID4A (ENSFCAG00000019223) #15	TOMM20L (ENSFCAG00000042004) #17	TIMM9 (ENSFCAG00000034453)	KIAA0586 (ENSFCAG00000010821) #19	DACT1 (ENSFCAG00000045905) #20	DAAM1 (ENSFCAG00000015646) #22	GPR135 (ENSFCAG00000052705)	L3HYPDH (ENSFCAG00000028924) #23	JKAMP (ENSFCAG00000015647) #24	CCDC175 (ENSFCAG00000008719) #25	ENSFCAG00000035822	RTN1 (ENSFCAG00000008720) #26	LRRC9 (ENSFCAG00000023454) #28	PCNX4 (ENSFCAG00000007893) #29	DHRS7 (ENSFCAG00000010540) #30	PPM1A (ENSFCAG00000026390) #31	CB3H14orf39 (ENSFCAG00000028111) #32	SIX6 (ENSFCAG00000015465) #33	SIX1 (ENSFCAG00000028964) #34	ENSFCAG00000030563	SIX4 (ENSFCAG00000026109) #35
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.b	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Chiroptera	ANCESTRAL SPECIES	15	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Megabat	MODERN SPECIES	3657																DAAM1 (ENSPVAG00000002766) #22	L3HYPDH (ENSPVAG00000002774) #23	JKAMP (ENSPVAG00000002775) #24	CCDC175 (ENSPVAG00000002776) #25	RTN1 (ENSPVAG00000002778) #26	ENSPVAG00000002780 #28	PCNX4 (ENSPVAG00000002781) #29	DHRS7 (ENSPVAG00000002782) #30	PPM1A (ENSPVAG00000002783) #31
Microchiroptera	ANCESTRAL SPECIES	19	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Microbat	MODERN SPECIES	1215					CCDC198 (ENSMLUG00000008135) #10	ENSMLUG00000024167	SLC35F4 (ENSMLUG00000017062) #11	ARMH4 (ENSMLUG00000016834) #12	ENSMLUG00000015154	ACTR10 (ENSMLUG00000007553) #13	PSMA3 (ENSMLUG00000007590) #14	ARID4A (ENSMLUG00000012354) #15	TOMM20L (ENSMLUG00000012369) #17	KIAA0586 (ENSMLUG00000012379) #19	DACT1 (ENSMLUG00000007848) #20	DAAM1 (ENSMLUG00000006528) #22	L3HYPDH (ENSMLUG00000004403) #23	JKAMP (ENSMLUG00000004404) #24	CCDC175 (ENSMLUG00000004414) #25	ENSMLUG00000023998 ##26
Greater horseshoe bat	MODERN SPECIES	24	NAA30 (ENSRFEG00010004478) #9	CCDC198 (ENSRFEG00010004458) #10	SLC35F4 (ENSRFEG00010004439) #11	ENSRFEG00010004425	ARMH4 (ENSRFEG00010004418) #12	ACTR10 (ENSRFEG00010004399) #13	ENSRFEG00010004387	PSMA3 (ENSRFEG00010004363) #14	ENSRFEG00010004355	ARID4A (ENSRFEG00010004329) #15	TOMM20L (ENSRFEG00010004303) #17	TIMM9 (ENSRFEG00010004281)	KIAA0586 (ENSRFEG00010004194) #19	DACT1 (ENSRFEG00010004136) #20	ENSRFEG00010004127	DAAM1 (ENSRFEG00010004071) #22	GPR135 (ENSRFEG00010004043)	L3HYPDH (ENSRFEG00010004031) #23	JKAMP (ENSRFEG00010004007) #24	CCDC175 (ENSRFEG00010003982) #25	RTN1 (ENSRFEG00010003928) #26	LRRC9 (ENSRFEG00010003818) #28	PCNX4 (ENSRFEG00010003778) #29	DHRS7 (ENSRFEG00010003763) #30	PPM1A (ENSRFEG00010003733) #31	SIX6 (ENSRFEG00010003701) #33	ENSRFEG00010003694 ##27	SIX1 (ENSRFEG00010003685) #34	SIX4 (ENSRFEG00010003668) #35	ENSRFEG00010003656	MNAT1 (ENSRFEG00010003633) #36
Equus	ANCESTRAL SPECIES	17	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.b	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Donkey	MODERN SPECIES	27	EXOC5 (ENSEASG00005016272) #7	AP5M1 (ENSEASG00005016268) #8	NAA30 (ENSEASG00005016267) #9	CCDC198 (ENSEASG00005016260) #10	SLC35F4 (ENSEASG00005016254) #11	ARMH4 (ENSEASG00005016246) #12	ACTR10 (ENSEASG00005016239) #13	PSMA3 (ENSEASG00005016233) #14	ARID4A (ENSEASG00005016222) #15	TOMM20L (ENSEASG00005016218) #17	TIMM9 (ENSEASG00005032848)	KIAA0586 (ENSEASG00005016191) #19	DACT1 (ENSEASG00005038443) #20	ENSEASG00005033052	ENSEASG00005034701	DAAM1 (ENSEASG00005016181) #22	GPR135 (ENSEASG00005016178)	L3HYPDH (ENSEASG00005016177) #23	JKAMP (ENSEASG00005016175) #24	CCDC175 (ENSEASG00005016172) #25	ENSEASG00005016170 #26	LRRC9 (ENSEASG00005016155) #28	ENSEASG00005016148 #29	ENSEASG00005016146 #29	DHRS7 (ENSEASG00005016143) #30	PPM1A (ENSEASG00005016139) #31	C14orf39 (ENSEASG00005035918) #32	SIX6 (ENSEASG00005016137) #33	SIX1 (ENSEASG00005016129) #34	SIX4 (ENSEASG00005016127) #35	MNAT1 (ENSEASG00005016125) #36
Horse	MODERN SPECIES	16	EXOC5 (ENSECAG00000008168) #7	AP5M1 (ENSECAG00000017818) #8	NAA30 (ENSECAG00000012925) #9	CCDC198 (ENSECAG00000013401) #10	SLC35F4 (ENSECAG00000013530) #11	ARMH4 (ENSECAG00000017456) #12	ACTR10 (ENSECAG00000018903) #13	PSMA3 (ENSECAG00000011509) #14	ARID4A (ENSECAG00000019256) #15	TOMM20L (ENSECAG00000053300) #17	TIMM9 (ENSECAG00000017063)	KIAA0586 (ENSECAG00000017695) #19	DACT1 (ENSECAG00000009167) #20	ENSECAG00000038995	ENSECAG00000009184	DAAM1 (ENSECAG00000009258) #22	GPR135 (ENSECAG00000034061)	L3HYPDH (ENSECAG00000017914) #23	JKAMP (ENSECAG00000026924) #24	ENSECAG00000050328	CCDC175 (ENSECAG00000018680) #25	RTN1 (ENSECAG00000024305) #26	LRRC9 (ENSECAG00000015680) #28	ENSECAG00000019407	PCNX4 (ENSECAG00000000365) #29	DHRS7 (ENSECAG00000011422) #30	PPM1A (ENSECAG00000016814) #31	C24H14orf39 (ENSECAG00000022230) #32	SIX6 (ENSECAG00000022806) #33	SIX1 (ENSECAG00000022919) #34	SIX4 (ENSECAG00000023515) #35
Eulipotyphla	ANCESTRAL SPECIES	529																ENSGT00940000156452 #22	ENSGT00390000002032 #23	ENSGT00390000018097 #24
Common shrew	MODERN SPECIES	6988																DAAM1 (ENSSARG00000010137) #22	ENSSARG00000010174 #23	JKAMP (ENSSARG00000010242) #24
Hedgehog	MODERN SPECIES	442																DAAM1 (ENSEEUG00000011778) #22
Atlantogenata	ANCESTRAL SPECIES	8	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35
Xenarthra	ANCESTRAL SPECIES	211									ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077.e.a ##26	ENSGT00940000155077.e.b ##26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30
Armadillo	MODERN SPECIES	920								ACTR10 (ENSDNOG00000044797) #13	ENSDNOG00000004077 #14	ARID4A (ENSDNOG00000004090) #15	TIMM9 (ENSDNOG00000014822)	KIAA0586 (ENSDNOG00000005182) #19	DACT1 (ENSDNOG00000000222) #20	ENSDNOG00000041175	ENSDNOG00000032645	DAAM1 (ENSDNOG00000003584) #22	GPR135 (ENSDNOG00000033522)	L3HYPDH (ENSDNOG00000000230) #23	JKAMP (ENSDNOG00000000232) #24	ENSDNOG00000047569 ##26	ENSDNOG00000015159 ##26	LRRC9 (ENSDNOG00000005731) #28	PCNX4 (ENSDNOG00000004618) #29	DHRS7 (ENSDNOG00000039298) #30
Sloth	MODERN SPECIES	303																DAAM1 (ENSCHOG00000004383) #22
Afrotheria	ANCESTRAL SPECIES	6	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Tenrec	MODERN SPECIES	391																DAAM1 (ENSETEG00000019884) #22
Afrotheria_a	ANCESTRAL SPECIES	6	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077.f #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Elephant	MODERN SPECIES	602	ENSLAFG00000027470	EXOC5 (ENSLAFG00000012633) #7	AP5M1 (ENSLAFG00000012643) #8	NAA30 (ENSLAFG00000005556) #9	CCDC198 (ENSLAFG00000027610) #10	SLC35F4 (ENSLAFG00000014182) #11	ARMH4 (ENSLAFG00000011333) #12	ACTR10 (ENSLAFG00000008644) #13	PSMA3 (ENSLAFG00000008648) #14	ARID4A (ENSLAFG00000008653) #15	TOMM20L (ENSLAFG00000008656) #17	ENSLAFG00000008658	KIAA0586 (ENSLAFG00000008659) #19	DACT1 (ENSLAFG00000007484) #20	ENSLAFG00000014987	DAAM1 (ENSLAFG00000001109) #22	GPR135 (ENSLAFG00000023155)	L3HYPDH (ENSLAFG00000013961) #23	JKAMP (ENSLAFG00000013965) #24	CCDC175 (ENSLAFG00000013972) #25	ENSLAFG00000032440	RTN1 (ENSLAFG00000021369) #26	LRRC9 (ENSLAFG00000016138) #28	ENSLAFG00000026397 #29	ENSLAFG00000014203 #29	DHRS7 (ENSLAFG00000014209) #30	SIX6 (ENSLAFG00000003106) #33	PPM1A (ENSLAFG00000015838) #31	C14orf39 (ENSLAFG00000011723) #32	SIX1 (ENSLAFG00000013981) #34	SIX4 (ENSLAFG00000021577) #35
Hyrax	MODERN SPECIES	254																DAAM1 (ENSPCAG00000004018) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Diprotodontia	ANCESTRAL SPECIES		ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00390000001277 #25	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Common wonbat	MODERN SPECIES	1106	NAA30 (ENSVURG00010017904) #9	CCDC198 (ENSVURG00010017910) #10	SLC35F4 (ENSVURG00010017916) #11	ENSVURG00010017920	ENSVURG00010017925	ENSVURG00010017929 #12	ACTR10 (ENSVURG00010017945) #13	PSMA3 (ENSVURG00010017951) #14	ARID4A (ENSVURG00010017963) #15	TOMM20L (ENSVURG00010017980) #17	TIMM9 (ENSVURG00010017986)	KIAA0586 (ENSVURG00010017992) #19	DACT1 (ENSVURG00010018006) #20	ENSVURG00010018020	ENSVURG00010018023	DAAM1 (ENSVURG00010018028) #22	ENSVURG00010018035	JKAMP (ENSVURG00010018038) #24	RTN1 (ENSVURG00010018044) #26	LRRC9 (ENSVURG00010018060) #28	PCNX4 (ENSVURG00010018089) #29	DHRS7 (ENSVURG00010018100) #30	PPM1A (ENSVURG00010018120) #31	C14orf39 (ENSVURG00010018124) #32	SIX6 (ENSVURG00010018134) #33	SIX1 (ENSVURG00010018138) #34	SIX4 (ENSVURG00010018145) #35	MNAT1 (ENSVURG00010018151) #36	TRMT5 (ENSVURG00010018162) #37	SLC38A6 (ENSVURG00010018165)	ENSVURG00010018175
koala	MODERN SPECIES	24	AP5M1 (ENSPCIG00000017500) #8	NAA30 (ENSPCIG00000016155) #9	CCDC198 (ENSPCIG00000017498) #10	SLC35F4 (ENSPCIG00000017494) #11	ARMH4 (ENSPCIG00000017493) #12	ACTR10 (ENSPCIG00000017492) #13	PSMA3 (ENSPCIG00000017491) #14	ARID4A (ENSPCIG00000017482) #15	TOMM20L (ENSPCIG00000017481) #17	TIMM9 (ENSPCIG00000017480)	KIAA0586 (ENSPCIG00000017477) #19	ENSPCIG00000035985	DACT1 (ENSPCIG00000017476) #20	ENSPCIG00000033655	ENSPCIG00000020357	DAAM1 (ENSPCIG00000020361) #22	GPR135 (ENSPCIG00000020390)	L3HYPDH (ENSPCIG00000020392) #23	JKAMP (ENSPCIG00000020397) #24	ENSPCIG00000020400 #25	ENSPCIG00000020410 #26	ENSPCIG00000020419 #26	LRRC9 (ENSPCIG00000020423) #28	PCNX4 (ENSPCIG00000020430) #29	DHRS7 (ENSPCIG00000020432) #30	PPM1A (ENSPCIG00000020435) #31	SIX6 (ENSPCIG00000020447) #33	SIX1 (ENSPCIG00000034712) #34	SIX4 (ENSPCIG00000020454) #35	MNAT1 (ENSPCIG00000020456) #36	TRMT5 (ENSPCIG00000020458) #37
Wallaby	MODERN SPECIES	957																DAAM1 (ENSMEUG00000002486) #22
Tasmanian devil	MODERN SPECIES	1	OTX2 (ENSSHAG00000015291)	EXOC5 (ENSSHAG00000016552) #7	AP5M1 (ENSSHAG00000016643) #8	NAA30 (ENSSHAG00000016832) #9	CCDC198 (ENSSHAG00000016983) #10	SLC35F4 (ENSSHAG00000017158) #11	ENSSHAG00000017692 #12	ACTR10 (ENSSHAG00000030692) #13	PSMA3 (ENSSHAG00000017955) #14	ARID4A (ENSSHAG00000018032) #15	TIMM9 (ENSSHAG00000018161)	KIAA0586 (ENSSHAG00000024604) #19	TOMM20L (ENSSHAG00000018187) #17	DACT1 (ENSSHAG00000018459) #20	ENSSHAG00000022250	DAAM1 (ENSSHAG00000008030) #22	GPR135 (ENSSHAG00000022361)	JKAMP (ENSSHAG00000010275) #24	ENSSHAG00000010446 #25	RTN1 (ENSSHAG00000012167) #26	LRRC9 (ENSSHAG00000012833) #28	PCNX4 (ENSSHAG00000013668) #29	DHRS7 (ENSSHAG00000013927) #30	PPM1A (ENSSHAG00000014493) #31	ENSSHAG00000015097 #32	SIX6 (ENSSHAG00000015311) #33	SIX1 (ENSSHAG00000015711) #34	SIX4 (ENSSHAG00000016030) #35	MNAT1 (ENSSHAG00000016338) #36	ENSSHAG00000030360	TRMT5 (ENSSHAG00000003232) #37
Opossum	MODERN SPECIES		EXOC5 (ENSMODG00000007734) #7	AP5M1 (ENSMODG00000007749) #8	NAA30 (ENSMODG00000007755) #9	ENSMODG00000007762 #10	SLC35F4 (ENSMODG00000007782) #11	ARMH4 (ENSMODG00000007807) #12	ACTR10 (ENSMODG00000007820) #13	PSMA3 (ENSMODG00000007839) #14	ARID4A (ENSMODG00000007881) #15	TOMM20L (ENSMODG00000007892) #17	TIMM9 (ENSMODG00000007898)	KIAA0586 (ENSMODG00000008090) #19	DACT1 (ENSMODG00000008148) #20	ENSMODG00000040674	ENSMODG00000049384	DAAM1 (ENSMODG00000008221) #22	GPR135 (ENSMODG00000023965)	L3HYPDH (ENSMODG00000008241) #23	JKAMP (ENSMODG00000043526) #24	ENSMODG00000025738 #25	RTN1 (ENSMODG00000008445) #26	LRRC9 (ENSMODG00000008565) #28	PCNX4 (ENSMODG00000008578) #29	DHRS7 (ENSMODG00000008587) #30	PPM1A (ENSMODG00000008615) #31	C14orf39 (ENSMODG00000025739) #32	SIX6 (ENSMODG00000008633) #33	SIX1 (ENSMODG00000049037) #34	SIX4 (ENSMODG00000008646) #35	MNAT1 (ENSMODG00000008657) #36	ENSMODG00000041214
Platypus	MODERN SPECIES	5	TMEM260 (ENSOANG00000004904)	OTX2 (ENSOANG00000045323)	EXOC5 (ENSOANG00000011830) #7	AP5M1 (ENSOANG00000011831) #8	NAA30 (ENSOANG00000050687) #9	ENSOANG00000020538 #10	SLC35F4 (ENSOANG00000011833) #11	ENSOANG00000015097 #12	ACTR10 (ENSOANG00000011834) #13	PSMA3 (ENSOANG00000011835) #14	ARID4A (ENSOANG00000011836) #15	ENSOANG00000039737	ENSOANG00000011837 #19	DACT1 (ENSOANG00000048620) #20	ENSOANG00000036720	DAAM1 (ENSOANG00000011840) #22	L3HYPDH (ENSOANG00000044494) #23	JKAMP (ENSOANG00000011847) #24	ENSOANG00000036881 #25	RTN1 (ENSOANG00000011849) #26	LRRC9 (ENSOANG00000011851) #28	PCNX4 (ENSOANG00000011855) #29	PPM1A (ENSOANG00000011857) #31	ENSOANG00000011859 #32	SIX6 (ENSOANG00000036455) #33	SIX1 (ENSOANG00000048161) #34	SIX4 (ENSOANG00000037971) #35	MNAT1 (ENSOANG00000009088) #36	TRMT5 (ENSOANG00000050880) #37	ENSOANG00000009089	PRKCH (ENSOANG00000009091)
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Lepidosauria	ANCESTRAL SPECIES	32	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000164563
tuatara	DUPLICATION
tuatara	DUPLICATION
tuatara	DUPLICATION
tuatara	MODERN SPECIES	698												ENSSPUG00000018262 #26	JKAMP (ENSSPUG00000018273) #24	ENSSPUG00000018289	GPR135 (ENSSPUG00000018298)	ENSSPUG00000018303 #22	ENSSPUG00000018306 #22	ENSSPUG00000018310 #22	ENSSPUG00000018314 #22	DACT1 (ENSSPUG00000018322) #20	KIAA0586 (ENSSPUG00000018331) #19	TIMM9 (ENSSPUG00000018346)	ARID4A (ENSSPUG00000018360) #15	PSMA3 (ENSSPUG00000018370) #14	ACTR10 (ENSSPUG00000018378) #13	SLC35F4 (ENSSPUG00000018384) #11	NAA30 (ENSSPUG00000018392) #9
tuatara	MODERN SPECIES	698											ENSSPUG00000018262 #26	JKAMP (ENSSPUG00000018273) #24	ENSSPUG00000018289	GPR135 (ENSSPUG00000018298)	ENSSPUG00000018303 #22	ENSSPUG00000018306 #22	ENSSPUG00000018310 #22	ENSSPUG00000018314 #22	DACT1 (ENSSPUG00000018322) #20	KIAA0586 (ENSSPUG00000018331) #19	TIMM9 (ENSSPUG00000018346)	ARID4A (ENSSPUG00000018360) #15	PSMA3 (ENSSPUG00000018370) #14	ACTR10 (ENSSPUG00000018378) #13	SLC35F4 (ENSSPUG00000018384) #11	NAA30 (ENSSPUG00000018392) #9
tuatara	MODERN SPECIES	698										ENSSPUG00000018262 #26	JKAMP (ENSSPUG00000018273) #24	ENSSPUG00000018289	GPR135 (ENSSPUG00000018298)	ENSSPUG00000018303 #22	ENSSPUG00000018306 #22	ENSSPUG00000018310 #22	ENSSPUG00000018314 #22	DACT1 (ENSSPUG00000018322) #20	KIAA0586 (ENSSPUG00000018331) #19	TIMM9 (ENSSPUG00000018346)	ARID4A (ENSSPUG00000018360) #15	PSMA3 (ENSSPUG00000018370) #14	ACTR10 (ENSSPUG00000018378) #13	SLC35F4 (ENSSPUG00000018384) #11	NAA30 (ENSSPUG00000018392) #9
tuatara	MODERN SPECIES	698									ENSSPUG00000018262 #26	JKAMP (ENSSPUG00000018273) #24	ENSSPUG00000018289	GPR135 (ENSSPUG00000018298)	ENSSPUG00000018303 #22	ENSSPUG00000018306 #22	ENSSPUG00000018310 #22	ENSSPUG00000018314 #22	DACT1 (ENSSPUG00000018322) #20	KIAA0586 (ENSSPUG00000018331) #19	TIMM9 (ENSSPUG00000018346)	ARID4A (ENSSPUG00000018360) #15	PSMA3 (ENSSPUG00000018370) #14	ACTR10 (ENSSPUG00000018378) #13	SLC35F4 (ENSSPUG00000018384) #11	NAA30 (ENSSPUG00000018392) #9
Episquamata	ANCESTRAL SPECIES		ENSGT00390000001071 #10	ENSGT00390000005665 #9	ENSGT00390000006191 #8	ENSGT00390000012837 #7	ENSGT00940000155014	ENSGT00390000013544	ENSGT00950000183050.b.a	ENSGT00940000158237	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000164563
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000005665 #9	ENSGT00390000006191 #8	ENSGT00390000012837 #7	ENSGT00940000155014	ENSGT00390000013544	ENSGT00950000183050.b.a	ENSGT00940000158237	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000165313	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000164563
Common wall lizard	MODERN SPECIES		ENSPMRG00000002651	ENSPMRG00000002659	PELI2 (ENSPMRG00000002664)	ENSPMRG00000002669	KTN1 (ENSPMRG00000002720)	PSMA3 (ENSPMRG00000002821) #14	ARID4A (ENSPMRG00000002888) #15	TOMM20L (ENSPMRG00000003034) #17	ENSPMRG00000003049	KIAA0586 (ENSPMRG00000003066) #19	ENSPMRG00000003093	DACT1 (ENSPMRG00000003098) #20	ENSPMRG00000003109	ENSPMRG00000003116	ENSPMRG00000003127	DAAM1 (ENSPMRG00000003146) #22	GPR135 (ENSPMRG00000003184)	L3HYPDH (ENSPMRG00000003189) #23	JKAMP (ENSPMRG00000003195) #24	RTN1 (ENSPMRG00000003216) #26	LRRC9 (ENSPMRG00000003252) #28	PCNX4 (ENSPMRG00000003280) #29	DHRS7 (ENSPMRG00000003294) #30	ENSPMRG00000003304	PPM1A (ENSPMRG00000003315) #31	SIX6 (ENSPMRG00000003321) #33	ENSPMRG00000003324	SIX1 (ENSPMRG00000003327) #34	SIX4 (ENSPMRG00000003332) #35	MNAT1 (ENSPMRG00000003335) #36	TRMT5 (ENSPMRG00000003344) #37
Argentine black and white tegu	MODERN SPECIES	39	NAA30 (ENSSMRG00000009664) #9	AP5M1 (ENSSMRG00000009666) #8	EXOC5 (ENSSMRG00000009667) #7	OTX2 (ENSSMRG00000009678)	ENSSMRG00000009679	TMEM260 (ENSSMRG00000009692)	PELI2 (ENSSMRG00000009704)	KTN1 (ENSSMRG00000009715)	PSMA3 (ENSSMRG00000009719) #14	ARID4A (ENSSMRG00000009732) #15	TOMM20L (ENSSMRG00000010186) #17	TIMM9 (ENSSMRG00000010187)	KIAA0586 (ENSSMRG00000010188) #19	DACT1 (ENSSMRG00000010195) #20	ENSSMRG00000010198	DAAM1 (ENSSMRG00000010209) #22	L3HYPDH (ENSSMRG00000012383) #23	JKAMP (ENSSMRG00000012384) #24	ENSSMRG00000012390	RTN1 (ENSSMRG00000012392) #26	LRRC9 (ENSSMRG00000012403) #28	PCNX4 (ENSSMRG00000012405) #29	DHRS7 (ENSSMRG00000012407) #30	PPM1A (ENSSMRG00000012411) #31	SIX6 (ENSSMRG00000012417) #33	SIX1 (ENSSMRG00000012422) #34	SIX4 (ENSSMRG00000012424) #35	MNAT1 (ENSSMRG00000012445) #36	TRMT5 (ENSSMRG00000012447) #37	SLC38A6 (ENSSMRG00000012449)	PRKCH (ENSSMRG00000012465)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00390000001071 #10	ENSGT00390000005665 #9	ENSGT00390000006191 #8	ENSGT00390000012837 #7	ENSGT00940000155014	ENSGT00390000013544	ENSGT00950000183050.b.a	ENSGT00940000158237	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000164563
Lizard	MODERN SPECIES	875															ENSACAG00000029451	DAAM1 (ENSACAG00000029141) #22	GPR135 (ENSACAG00000015033)	L3HYPDH (ENSACAG00000015038) #23	JKAMP (ENSACAG00000029161) #24	ENSACAG00000042860	RTN1 (ENSACAG00000015060) #26	LRRC9 (ENSACAG00000015114) #28	PCNX4 (ENSACAG00000015129) #29	DHRS7 (ENSACAG00000015156) #30	PPM1A (ENSACAG00000015169) #31	SIX6 (ENSACAG00000016672) #33	SIX1 (ENSACAG00000023286) #34	SIX4 (ENSACAG00000006593) #35	MNAT1 (ENSACAG00000006546) #36	TRMT5 (ENSACAG00000006533) #37	SLC38A6 (ENSACAG00000006516)
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000001071 #10	ENSGT00390000005665 #9	ENSGT00390000006191 #8	ENSGT00390000012837 #7	ENSGT00940000155014	ENSGT00390000013544	ENSGT00950000183050.b.a	ENSGT00940000158237	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452.k #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000164563
Indian cobra	MODERN SPECIES		CCDC198 (ENSNNAG00000005201) #10	NAA30 (ENSNNAG00000005185) #9	AP5M1 (ENSNNAG00000005163) #8	EXOC5 (ENSNNAG00000005063) #7	OTX2 (ENSNNAG00000005044)	ENSNNAG00000005014	ENSNNAG00000004973	PELI2 (ENSNNAG00000004953)	KTN1 (ENSNNAG00000004514)	PSMA3 (ENSNNAG00000004406) #14	TOMM20L (ENSNNAG00000004072) #17	ENSNNAG00000004050	KIAA0586 (ENSNNAG00000003918) #19	DACT1 (ENSNNAG00000003868) #20	ENSNNAG00000003855	DAAM1 (ENSNNAG00000003763) #22	GPR135 (ENSNNAG00000003712)	L3HYPDH (ENSNNAG00000003696) #23	JKAMP (ENSNNAG00000003684) #24	ENSNNAG00000003665 #26	ENSNNAG00000003644 #26	LRRC9 (ENSNNAG00000003494) #28	PCNX4 (ENSNNAG00000003473) #29	DHRS7 (ENSNNAG00000003464) #30	PPM1A (ENSNNAG00000003460) #31	SIX6 (ENSNNAG00000003450) #33	ENSNNAG00000003437	SIX1 (ENSNNAG00000003430) #34	SIX4 (ENSNNAG00000010902) #35	MNAT1 (ENSNNAG00000010867) #36	TRMT5 (ENSNNAG00000010826) #37
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00990000211542	ENSGT00390000005665 #9	ENSGT00390000006191 #8	ENSGT00390000012837 #7	ENSGT00940000155014	ENSGT00390000013544	ENSGT00950000183050.b.a	ENSGT00940000158237	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452.k #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000164563
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00990000211542	ENSGT00390000005665 #9	ENSGT00390000006191 #8	ENSGT00390000012837 #7	ENSGT00940000155014	ENSGT00390000013544	ENSGT00950000183050.b.a	ENSGT00940000158237	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452.k #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000164563
Mainland tiger snake	MODERN SPECIES	31	SLC35F4 (ENSNSUG00000019287) #11	ENSNSUG00000019286	NAA30 (ENSNSUG00000019285) #9	AP5M1 (ENSNSUG00000019284) #8	EXOC5 (ENSNSUG00000019283) #7	OTX2 (ENSNSUG00000019281)	ENSNSUG00000019279	PELI2 (ENSNSUG00000019278)	KTN1 (ENSNSUG00000019277)	PSMA3 (ENSNSUG00000019276) #14	ARID4A (ENSNSUG00000019275) #15	TOMM20L (ENSNSUG00000019274) #17	TIMM9 (ENSNSUG00000019273)	KIAA0586 (ENSNSUG00000019272) #19	DACT1 (ENSNSUG00000019271) #20	DAAM1 (ENSNSUG00000019117) #22	GPR135 (ENSNSUG00000019116)	L3HYPDH (ENSNSUG00000019115) #23	JKAMP (ENSNSUG00000019114) #24	RTN1 (ENSNSUG00000019113) #26	LRRC9 (ENSNSUG00000019112) #28	PCNX4 (ENSNSUG00000019111) #29	DHRS7 (ENSNSUG00000019110) #30	PPM1A (ENSNSUG00000019109) #31	SIX6 (ENSNSUG00000019108) #33	SIX1 (ENSNSUG00000019107) #34	SIX4 (ENSNSUG00000019106) #35	MNAT1 (ENSNSUG00000019105) #36	TRMT5 (ENSNSUG00000019104) #37	SLC38A6 (ENSNSUG00000019102)	ENSNSUG00000019101
Eastern brown snake	MODERN SPECIES	10	ENSPTXG00000001400	NAA30 (ENSPTXG00000001399) #9	AP5M1 (ENSPTXG00000001397) #8	EXOC5 (ENSPTXG00000001393) #7	OTX2 (ENSPTXG00000001391)	TMEM260 (ENSPTXG00000001385)	PELI2 (ENSPTXG00000001377)	KTN1 (ENSPTXG00000001325)	PSMA3 (ENSPTXG00000001310) #14	ARID4A (ENSPTXG00000001303) #15	TOMM20L (ENSPTXG00000001300) #17	TIMM9 (ENSPTXG00000001298)	KIAA0586 (ENSPTXG00000001294) #19	DACT1 (ENSPTXG00000001292) #20	ENSPTXG00000001288	DAAM1 (ENSPTXG00000000641) #22	GPR135 (ENSPTXG00000000598)	L3HYPDH (ENSPTXG00000000595) #23	JKAMP (ENSPTXG00000000592) #24	ENSPTXG00000000586 #26	LRRC9 (ENSPTXG00000000468) #28	PCNX4 (ENSPTXG00000000426) #29	DHRS7 (ENSPTXG00000000395) #30	PPM1A (ENSPTXG00000000380) #31	SIX6 (ENSPTXG00000000369) #33	SIX1 (ENSPTXG00000000366) #34	SIX4 (ENSPTXG00000000355) #35	MNAT1 (ENSPTXG00000000344) #36	TRMT5 (ENSPTXG00000000327) #37	SLC38A6 (ENSPTXG00000000313)	PRKCH (ENSPTXG00000000185)
Blue-lipped sea krait	MODERN SPECIES	8886																ENSLLTG00000012959 #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000156452.l #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000156452.l #22
Blue-lipped sea krait	MODERN SPECIES	1074																ENSLLTG00000007908 #22
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Cryptodira	ANCESTRAL SPECIES	38	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982
Emydidae	ANCESTRAL SPECIES	43	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982
Three-toed box turtle	MODERN SPECIES	87	TMEM260 (ENSTMTG00000020185)	OTX2 (ENSTMTG00000020173)	EXOC5 (ENSTMTG00000020151) #7	AP5M1 (ENSTMTG00000020142) #8	NAA30 (ENSTMTG00000020135) #9	CCDC198 (ENSTMTG00000020126) #10	SLC35F4 (ENSTMTG00000020114) #11	ARMH4 (ENSTMTG00000020106) #12	ACTR10 (ENSTMTG00000020080) #13	PSMA3 (ENSTMTG00000020053) #14	ARID4A (ENSTMTG00000019991) #15	ENSTMTG00000019985	KIAA0586 (ENSTMTG00000019833) #19	DACT1 (ENSTMTG00000019805) #20	ENSTMTG00000019789	DAAM1 (ENSTMTG00000019760) #22	GPR135 (ENSTMTG00000019746)	L3HYPDH (ENSTMTG00000019739) #23	JKAMP (ENSTMTG00000019727) #24	ENSTMTG00000019705 #26	ENSTMTG00000019695	LRRC9 (ENSTMTG00000019555) #28	PCNX4 (ENSTMTG00000019526) #29	DHRS7 (ENSTMTG00000019513) #30	PPM1A (ENSTMTG00000019503) #31	SIX6 (ENSTMTG00000019495) #33	SIX1 (ENSTMTG00000019488) #34	SIX4 (ENSTMTG00000019458) #35	MNAT1 (ENSTMTG00000019436) #36	TRMT5 (ENSTMTG00000019423) #37	SLC38A6 (ENSTMTG00000019285)
painted turtle	MODERN SPECIES	701	ESR2 (ENSCPBG00000022325)	ENSCPBG00000022328	MTHFD1 (ENSCPBG00000022332)	AKAP5 (ENSCPBG00000022348)	ZBTB25 (ENSCPBG00000022350)	ZBTB1 (ENSCPBG00000022353)	HSPA2 (ENSCPBG00000022356)	TRMT5 (ENSCPBG00000022359) #37	SLC38A6 (ENSCPBG00000022360)	PPM1A (ENSCPBG00000022361) #31	SIX6 (ENSCPBG00000022363) #33	SIX1 (ENSCPBG00000022364) #34	SIX4 (ENSCPBG00000022365) #35	MNAT1 (ENSCPBG00000022366) #36	ENSCPBG00000022367	DAAM1 (ENSCPBG00000022371) #22	GPR135 (ENSCPBG00000022379)	L3HYPDH (ENSCPBG00000022387) #23	JKAMP (ENSCPBG00000022392) #24	ENSCPBG00000022394	ENSCPBG00000022395	RTN1 (ENSCPBG00000022397) #26	LRRC9 (ENSCPBG00000000335) #28	PCNX4 (ENSCPBG00000000559) #29	DHRS7 (ENSCPBG00000000599) #30
Testudinidae	ANCESTRAL SPECIES	43	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00390000011698.c.b #17	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000164563
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	18	TMEM260 (ENSGEVG00005002559)	OTX2 (ENSGEVG00005002569)	EXOC5 (ENSGEVG00005002581) #7	AP5M1 (ENSGEVG00005002607) #8	NAA30 (ENSGEVG00005002629) #9	CCDC198 (ENSGEVG00005002639) #10	SLC35F4 (ENSGEVG00005002650) #11	ARMH4 (ENSGEVG00005002659) #12	ACTR10 (ENSGEVG00005002670) #13	PSMA3 (ENSGEVG00005002683) #14	ARID4A (ENSGEVG00005002716) #15	TOMM20L (ENSGEVG00005002765) #17	TIMM9 (ENSGEVG00005002781)	KIAA0586 (ENSGEVG00005002832) #19	DACT1 (ENSGEVG00005002912) #20	ENSGEVG00005002922 #22	ENSGEVG00005002934 #22	GPR135 (ENSGEVG00005000091)	L3HYPDH (ENSGEVG00005000117) #23	JKAMP (ENSGEVG00005000144) #24	ENSGEVG00005000175 #26	LRRC9 (ENSGEVG00005000248) #28	PCNX4 (ENSGEVG00005000426) #29	DHRS7 (ENSGEVG00005000446) #30	PPM1A (ENSGEVG00005000468) #31	SIX6 (ENSGEVG00005000484) #33	SIX1 (ENSGEVG00005000499) #34	ENSGEVG00005000529 #35	MNAT1 (ENSGEVG00005000570) #36	TRMT5 (ENSGEVG00005000627) #37	SLC38A6 (ENSGEVG00005000659)
Goode s thornscrub tortoise	MODERN SPECIES	18	OTX2 (ENSGEVG00005002569)	EXOC5 (ENSGEVG00005002581) #7	AP5M1 (ENSGEVG00005002607) #8	NAA30 (ENSGEVG00005002629) #9	CCDC198 (ENSGEVG00005002639) #10	SLC35F4 (ENSGEVG00005002650) #11	ARMH4 (ENSGEVG00005002659) #12	ACTR10 (ENSGEVG00005002670) #13	PSMA3 (ENSGEVG00005002683) #14	ARID4A (ENSGEVG00005002716) #15	TOMM20L (ENSGEVG00005002765) #17	TIMM9 (ENSGEVG00005002781)	KIAA0586 (ENSGEVG00005002832) #19	DACT1 (ENSGEVG00005002912) #20	ENSGEVG00005002922 #22	ENSGEVG00005002934 #22	GPR135 (ENSGEVG00005000091)	L3HYPDH (ENSGEVG00005000117) #23	JKAMP (ENSGEVG00005000144) #24	ENSGEVG00005000175 #26	LRRC9 (ENSGEVG00005000248) #28	PCNX4 (ENSGEVG00005000426) #29	DHRS7 (ENSGEVG00005000446) #30	PPM1A (ENSGEVG00005000468) #31	SIX6 (ENSGEVG00005000484) #33	SIX1 (ENSGEVG00005000499) #34	ENSGEVG00005000529 #35	MNAT1 (ENSGEVG00005000570) #36	TRMT5 (ENSGEVG00005000627) #37	SLC38A6 (ENSGEVG00005000659)	PRKCH (ENSGEVG00005000706)
Abingdon island giant tortoise	MODERN SPECIES	862	ENSCABG00000011330	ENSCABG00000011331	ENSCABG00000011332	ENSCABG00000011333	ENSCABG00000011334	ENSCABG00000011335	ENSCABG00000011337	ENSCABG00000011338	ENSCABG00000011339	ENSCABG00000011340	ENSCABG00000011341	ENSCABG00000011351	ENSCABG00000011352	ENSCABG00000011354	ENSCABG00000011356	ENSCABG00000011357 #22	ENSCABG00000011358	JKAMP (ENSCABG00000011359) #24	ENSCABG00000011360 #26
Chinese turtle	MODERN SPECIES	2037	EXOC5 (ENSPSIG00000009250) #7	AP5M1 (ENSPSIG00000010971) #8	NAA30 (ENSPSIG00000011241) #9	CCDC198 (ENSPSIG00000011936) #10	SLC35F4 (ENSPSIG00000012025) #11	ENSPSIG00000000525	ENSPSIG00000012383 #12	ENSPSIG00000012592 #12	ACTR10 (ENSPSIG00000012644) #13	PSMA3 (ENSPSIG00000014260) #14	ARID4A (ENSPSIG00000014845) #15	TIMM9 (ENSPSIG00000015859)	KIAA0586 (ENSPSIG00000016909) #19	DACT1 (ENSPSIG00000000545) #20	ENSPSIG00000005133	DAAM1 (ENSPSIG00000005199) #22	L3HYPDH (ENSPSIG00000005457) #23	JKAMP (ENSPSIG00000005463) #24	RTN1 (ENSPSIG00000005486) #26	ENSPSIG00000005617 #28	ENSPSIG00000005788 #28	PCNX4 (ENSPSIG00000005798) #29	DHRS7 (ENSPSIG00000006028) #30
Archosauria	ANCESTRAL SPECIES	5	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Australian saltwater crocodile	MODERN SPECIES	64	TMEM260 (ENSCPRG00005017876)	OTX2 (ENSCPRG00005017888)	EXOC5 (ENSCPRG00005017897) #7	AP5M1 (ENSCPRG00005017901) #8	NAA30 (ENSCPRG00005017906) #9	ENSCPRG00005017907	SLC35F4 (ENSCPRG00005017910) #11	ARMH4 (ENSCPRG00005017913) #12	ACTR10 (ENSCPRG00005017915) #13	PSMA3 (ENSCPRG00005017923) #14	ARID4A (ENSCPRG00005017932) #15	TIMM9 (ENSCPRG00005017936)	KIAA0586 (ENSCPRG00005017940) #19	DACT1 (ENSCPRG00005017955) #20	ENSCPRG00005017963	DAAM1 (ENSCPRG00005017967) #22	L3HYPDH (ENSCPRG00005017978) #23	JKAMP (ENSCPRG00005017982) #24	RTN1 (ENSCPRG00005017988) #26	LRRC9 (ENSCPRG00005018001) #28	PCNX4 (ENSCPRG00005018012) #29	DHRS7 (ENSCPRG00005018018) #30	PPM1A (ENSCPRG00005018023) #31	SIX6 (ENSCPRG00005018029) #33	SIX4 (ENSCPRG00005018032) #35	MNAT1 (ENSCPRG00005018041) #36	TRMT5 (ENSCPRG00005018050) #37	SLC38A6 (ENSCPRG00005018056)	PRKCH (ENSCPRG00005018065)	HIF1A (ENSCPRG00005018074)	SNAPC1 (ENSCPRG00005018076)
Aves	ANCESTRAL SPECIES	2	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT01050000244827.D.b.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000170020	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
African ostrich	MODERN SPECIES	471	OTX2 (ENSSCUG00000008062)	EXOC5 (ENSSCUG00000008066) #7	AP5M1 (ENSSCUG00000008079) #8	NAA30 (ENSSCUG00000008082) #9	ENSSCUG00000008083 #10	SLC35F4 (ENSSCUG00000008084) #11	ARMH4 (ENSSCUG00000008085) #12	ACTR10 (ENSSCUG00000008086) #13	PSMA3 (ENSSCUG00000008092) #14	ARID4A (ENSSCUG00000008134) #15	TIMM9 (ENSSCUG00000008143)	KIAA0586 (ENSSCUG00000008148) #19	DACT1 (ENSSCUG00000008177) #20	ENSSCUG00000008187	ENSSCUG00000008189	DAAM1 (ENSSCUG00000008197) #22	ENSSCUG00000008202	JKAMP (ENSSCUG00000008203) #24	RTN1 (ENSSCUG00000008208) #26	ENSSCUG00000008212	PCNX4 (ENSSCUG00000008219) #29	DHRS7 (ENSSCUG00000008220) #30	PPM1A (ENSSCUG00000008223) #31	C14orf39 (ENSSCUG00000008225) #32	SIX4 (ENSSCUG00000008229) #35	MNAT1 (ENSSCUG00000008232) #36	ENSSCUG00000008233	TRMT5 (ENSSCUG00000008237) #37	SLC38A6 (ENSSCUG00000008240)	PRKCH (ENSSCUG00000008244)	HIF1A (ENSSCUG00000008246)
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT01050000244827.D.b.a.g	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000170020	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT01050000244827.D.b.a.g	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000170020	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT01050000244827.D.b.a.h	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000170020	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES	23	OTX2 (ENSCJPG00005006178)	EXOC5 (ENSCJPG00005006164) #7	AP5M1 (ENSCJPG00005006162) #8	NAA30 (ENSCJPG00005006116) #9	ENSCJPG00005006115	SLC35F4 (ENSCJPG00005006099) #11	ARMH4 (ENSCJPG00005006085) #12	ACTR10 (ENSCJPG00005006073) #13	PSMA3 (ENSCJPG00005006015) #14	ARID4A (ENSCJPG00005005700) #15	TIMM9 (ENSCJPG00005005692)	KIAA0586 (ENSCJPG00005005686) #19	DACT1 (ENSCJPG00005005685) #20	ENSCJPG00005005665	ENSCJPG00005005663	ENSCJPG00005005662 #22	ENSCJPG00005005659 #22	GPR135 (ENSCJPG00005005656)	L3HYPDH (ENSCJPG00005005653) #23	JKAMP (ENSCJPG00005005651) #24	ENSCJPG00005005628	RTN1 (ENSCJPG00005005613) #26	ENSCJPG00005005511	PCNX4 (ENSCJPG00005005503) #29	DHRS7 (ENSCJPG00005005497) #30	ENSCJPG00005005494	PPM1A (ENSCJPG00005005489) #31	SIX6 (ENSCJPG00005005472) #33	SIX1 (ENSCJPG00005005470) #34	SIX4 (ENSCJPG00005005469) #35	MNAT1 (ENSCJPG00005005463) #36
Japanese quail	MODERN SPECIES	23	EXOC5 (ENSCJPG00005006164) #7	AP5M1 (ENSCJPG00005006162) #8	NAA30 (ENSCJPG00005006116) #9	ENSCJPG00005006115	SLC35F4 (ENSCJPG00005006099) #11	ARMH4 (ENSCJPG00005006085) #12	ACTR10 (ENSCJPG00005006073) #13	PSMA3 (ENSCJPG00005006015) #14	ARID4A (ENSCJPG00005005700) #15	TIMM9 (ENSCJPG00005005692)	KIAA0586 (ENSCJPG00005005686) #19	DACT1 (ENSCJPG00005005685) #20	ENSCJPG00005005665	ENSCJPG00005005663	ENSCJPG00005005662 #22	ENSCJPG00005005659 #22	GPR135 (ENSCJPG00005005656)	L3HYPDH (ENSCJPG00005005653) #23	JKAMP (ENSCJPG00005005651) #24	ENSCJPG00005005628	RTN1 (ENSCJPG00005005613) #26	ENSCJPG00005005511	PCNX4 (ENSCJPG00005005503) #29	DHRS7 (ENSCJPG00005005497) #30	ENSCJPG00005005494	PPM1A (ENSCJPG00005005489) #31	SIX6 (ENSCJPG00005005472) #33	SIX1 (ENSCJPG00005005470) #34	SIX4 (ENSCJPG00005005469) #35	MNAT1 (ENSCJPG00005005463) #36	TRMT5 (ENSCJPG00005005460) #37
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000165313	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000170020	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Chicken	MODERN SPECIES	34	ARID4A (ENSGALG00010017384) #15	TIMM9 (ENSGALG00010017363)	TA3 (ENSGALG00010017341) #19	DACT1 (ENSGALG00010017290) #20	KCNK4 (ENSGALG00010017284)	ENSGALG00010019806	ENSGALG00010019805	ENSGALG00010019795	ENSGALG00010019776	ENSGALG00010019759	ENSGALG00010019748	ENSGALG00010020144	ENSGALG00010020139	ENSGALG00010019728	ENSGALG00010020135	DAAM1 (ENSGALG00010017098) #22	GPR135 (ENSGALG00010017055)	L3HYPDH (ENSGALG00010017050) #23	JKAMP (ENSGALG00010017041) #24	ENSGALG00010017032	RTN1 (ENSGALG00010017008) #26	ENSGALG00010016954	PCNX4 (ENSGALG00010016943) #29	DHRS7 (ENSGALG00010016937) #30	ENSGALG00010016926	PPM1A (ENSGALG00010016903) #31	C14orf39 (ENSGALG00010016775) #32	SIX6 (ENSGALG00010019860) #33	SIX1 (ENSGALG00010017933) #34	SIX4 (ENSGALG00010017918) #35	MNAT1 (ENSGALG00010017895) #36
Anatidae	ANCESTRAL SPECIES	9	ENSGT00390000013544	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT01050000244827.D.b.a.g.b.a	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000170020	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Pink-footed goose	MODERN SPECIES	56	TMEM260 (ENSABRG00000013023)	OTX2 (ENSABRG00000013040)	EXOC5 (ENSABRG00000013062) #7	AP5M1 (ENSABRG00000013069) #8	NAA30 (ENSABRG00000013081) #9	SLC35F4 (ENSABRG00000013099) #11	ARMH4 (ENSABRG00000013125) #12	ACTR10 (ENSABRG00000013140) #13	PSMA3 (ENSABRG00000013193) #14	ARID4A (ENSABRG00000013291) #15	TIMM9 (ENSABRG00000013463)	KIAA0586 (ENSABRG00000013478) #19	DACT1 (ENSABRG00000013488) #20	ENSABRG00000013495	ENSABRG00000013496	DAAM1 (ENSABRG00000013503) #22	GPR135 (ENSABRG00000013512)	ENSABRG00000013516	JKAMP (ENSABRG00000013527) #24	ENSABRG00000013538	ENSABRG00000013557 #26	ENSABRG00000013565	PCNX4 (ENSABRG00000013653) #29	DHRS7 (ENSABRG00000013664) #30	PPM1A (ENSABRG00000013674) #31	C14orf39 (ENSABRG00000013685) #32	SIX4 (ENSABRG00000013704) #35	MNAT1 (ENSABRG00000013710) #36	TRMT5 (ENSABRG00000013726) #37	SLC38A6 (ENSABRG00000013741)	ENSABRG00000013765
Duck	MODERN SPECIES	23	MNAT1 (ENSAPLG00000008083) #36	SIX4 (ENSAPLG00000008107) #35	SIX1 (ENSAPLG00000008206) #34	ENSAPLG00000024283	SIX6 (ENSAPLG00000004766) #33	C14orf39 (ENSAPLG00000004918) #32	PPM1A (ENSAPLG00000005121) #31	DHRS7 (ENSAPLG00000005318) #30	PCNX4 (ENSAPLG00000005544) #29	ENSAPLG00000005575	RTN1 (ENSAPLG00000014979) #26	ENSAPLG00000014704	JKAMP (ENSAPLG00000014595) #24	L3HYPDH (ENSAPLG00000028035) #23	GPR135 (ENSAPLG00000029388)	DAAM1 (ENSAPLG00000013283) #22	ENSAPLG00000009366	DACT1 (ENSAPLG00000017056) #20	KIAA0586 (ENSAPLG00000007055) #19	ENSAPLG00000025019	ARID4A (ENSAPLG00000006185) #15	PSMA3 (ENSAPLG00000015841) #14	ACTR10 (ENSAPLG00000016109) #13	ARMH4 (ENSAPLG00000000800) #12	SLC35F4 (ENSAPLG00000001042) #11	NAA30 (ENSAPLG00000001619) #9	AP5M1 (ENSAPLG00000001799) #8	EXOC5 (ENSAPLG00000002629) #7	OTX2 (ENSAPLG00000030438)	TMEM260 (ENSAPLG00000008287)	PELI2 (ENSAPLG00000008440)
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT01050000244827.D.b.a.g	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000164563
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT01050000244827.D.b.a.g.f.a	ENSGT01050000244827.D.b.a.g.f.b	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000158220
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT01050000244827.D.b.a.g.f.a	ENSGT01050000244827.D.b.a.g.f.b	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000158220
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT01050000244827.D.b.a.g.f.a	ENSGT01050000244827.D.b.a.g.f.b	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000158220
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT01050000244827.D.b.a.g.f.a	ENSGT01050000244827.D.b.a.g.f.b	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00390000010439 #32	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000158220
Common canary	MODERN SPECIES	3	OTX2 (ENSSCAG00000005303)	EXOC5 (ENSSCAG00000005307) #7	AP5M1 (ENSSCAG00000005309) #8	NAA30 (ENSSCAG00000005313) #9	CCDC198 (ENSSCAG00000005317) #10	SLC35F4 (ENSSCAG00000005323) #11	ARMH4 (ENSSCAG00000005328) #12	ACTR10 (ENSSCAG00000005334) #13	PSMA3 (ENSSCAG00000005340) #14	ARID4A (ENSSCAG00000005371) #15	TIMM9 (ENSSCAG00000005377)	KIAA0586 (ENSSCAG00000005383) #19	DACT1 (ENSSCAG00000005405) #20	ENSSCAG00000005412	ENSSCAG00000005415	DAAM1 (ENSSCAG00000005439) #22	L3HYPDH (ENSSCAG00000005873) #23	JKAMP (ENSSCAG00000005877) #24	ENSSCAG00000005888 #26	SIX6 (ENSSCAG00000005902) #33	SIX1 (ENSSCAG00000005907) #34	MNAT1 (ENSSCAG00000005917) #36	TRMT5 (ENSSCAG00000005920) #37	SLC38A6 (ENSSCAG00000005924)	PRKCH (ENSSCAG00000005933)	HIF1A (ENSSCAG00000005942)	SNAPC1 (ENSSCAG00000005949)	ENSSCAG00000005952	ENSSCAG00000005958	ENSSCAG00000005961	KCNH5 (ENSSCAG00000005965)
Zebra finch	MODERN SPECIES	27	TMEM260 (ENSTGUG00000013057)	OTX2 (ENSTGUG00000013055)	EXOC5 (ENSTGUG00000013051) #7	AP5M1 (ENSTGUG00000013050) #8	NAA30 (ENSTGUG00000026471) #9	CCDC198 (ENSTGUG00000020389) #10	SLC35F4 (ENSTGUG00000013048) #11	ARMH4 (ENSTGUG00000021718) #12	ACTR10 (ENSTGUG00000013040) #13	PSMA3 (ENSTGUG00000013036) #14	ARID4A (ENSTGUG00000013032) #15	TIMM9 (ENSTGUG00000013029)	DACT1 (ENSTGUG00000013023) #20	ENSTGUG00000013021	ENSTGUG00000020508	DAAM1 (ENSTGUG00000013012) #22	GPR135 (ENSTGUG00000021446)	L3HYPDH (ENSTGUG00000013009) #23	JKAMP (ENSTGUG00000013008) #24	RTN1 (ENSTGUG00000013003) #26	PCNX4 (ENSTGUG00000013002) #29	DHRS7 (ENSTGUG00000013000) #30	PPM1A (ENSTGUG00000022913) #31	C14orf39 (ENSTGUG00000022024) #32	SIX6 (ENSTGUG00000012995) #33	SIX1 (ENSTGUG00000024190) #34	SIX4 (ENSTGUG00000026366) #35	MNAT1 (ENSTGUG00000012990) #36	TRMT5 (ENSTGUG00000024106) #37	SLC38A6 (ENSTGUG00000012985)	PRKCH (ENSTGUG00000012981)
Medium ground finch	MODERN SPECIES	6	OTX2 (ENSGFOG00000001897)	EXOC5 (ENSGFOG00000001880) #7	AP5M1 (ENSGFOG00000001815) #8	NAA30 (ENSGFOG00000001774) #9	SLC35F4 (ENSGFOG00000001755) #11	ARMH4 (ENSGFOG00000001734) #12	ACTR10 (ENSGFOG00000001693) #13	PSMA3 (ENSGFOG00000001621) #14	ARID4A (ENSGFOG00000001108) #15	TIMM9 (ENSGFOG00000001009)	KIAA0586 (ENSGFOG00000000988) #19	DACT1 (ENSGFOG00000000977) #20	ENSGFOG00000000968	ENSGFOG00000000961	ENSGFOG00000000955	DAAM1 (ENSGFOG00000000911) #22	ENSGFOG00000000890	JKAMP (ENSGFOG00000000883) #24	ENSGFOG00000000870 #26	PCNX4 (ENSGFOG00000000864) #29	DHRS7 (ENSGFOG00000000856) #30	PPM1A (ENSGFOG00000000847) #31	SIX6 (ENSGFOG00000000845) #33	SIX1 (ENSGFOG00000000841) #34	SIX4 (ENSGFOG00000000832) #35	MNAT1 (ENSGFOG00000000822) #36	TRMT5 (ENSGFOG00000000815) #37	SLC38A6 (ENSGFOG00000000806)	PRKCH (ENSGFOG00000000797)	HIF1A (ENSGFOG00000000787)	SNAPC1 (ENSGFOG00000000778)
Great tit	MODERN SPECIES	25	TMEM260 (ENSPMJG00000003404)	OTX2 (ENSPMJG00000003401)	EXOC5 (ENSPMJG00000003341) #7	AP5M1 (ENSPMJG00000003336) #8	NAA30 (ENSPMJG00000003327) #9	CCDC198 (ENSPMJG00000003319) #10	SLC35F4 (ENSPMJG00000003288) #11	ARMH4 (ENSPMJG00000003213) #12	ACTR10 (ENSPMJG00000003159) #13	PSMA3 (ENSPMJG00000003153) #14	ARID4A (ENSPMJG00000002697) #15	TIMM9 (ENSPMJG00000002691)	KIAA0586 (ENSPMJG00000002665) #19	DACT1 (ENSPMJG00000002557) #20	ENSPMJG00000002430	DAAM1 (ENSPMJG00000002388) #22	GPR135 (ENSPMJG00000002377)	L3HYPDH (ENSPMJG00000002365) #23	JKAMP (ENSPMJG00000002359) #24	RTN1 (ENSPMJG00000002328) #26	PCNX4 (ENSPMJG00000002265) #29	DHRS7 (ENSPMJG00000002228) #30	PPM1A (ENSPMJG00000002202) #31	C14orf39 (ENSPMJG00000002153) #32	SIX6 (ENSPMJG00000002148) #33	SIX1 (ENSPMJG00000002144) #34	SIX4 (ENSPMJG00000002136) #35	MNAT1 (ENSPMJG00000002122) #36	TRMT5 (ENSPMJG00000002107) #37	SLC38A6 (ENSPMJG00000002063)	PRKCH (ENSPMJG00000001874)
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00940000155014	ENSGT00960000189593	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000155077 #26	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37	ENSGT00940000156982	ENSGT00940000164563	ENSGT00940000158220
Kakapo	MODERN SPECIES	21	MAP3K9 (ENSSHBG00005007269)	PCNX1 (ENSSHBG00005007373)	SIPA1L1 (ENSSHBG00005007504)	RGS6 (ENSSHBG00005007568)	DPF3 (ENSSHBG00005007630)	ENSSHBG00005007656	ZFYVE1 (ENSSHBG00005007695)	RBM25 (ENSSHBG00005007722)	PSEN1 (ENSSHBG00005007748)	PAPLN (ENSSHBG00005007787)	NUMB (ENSSHBG00005009580)	ENSSHBG00005009601	RIOX1 (ENSSHBG00005009607)	ENSSHBG00005009618	ENSSHBG00005009629	DAAM1 (ENSSHBG00005009642) #22	GPR135 (ENSSHBG00005009655)	L3HYPDH (ENSSHBG00005009659) #23	JKAMP (ENSSHBG00005009664) #24	RTN1 (ENSSHBG00005009678) #26	PCNX4 (ENSSHBG00005009689) #29	DHRS7 (ENSSHBG00005009699) #30	PPM1A (ENSSHBG00005009710) #31	SIX6 (ENSSHBG00005009721) #33	SIX1 (ENSSHBG00005009728) #34	SIX4 (ENSSHBG00005009738) #35	MNAT1 (ENSSHBG00005009747) #36	TRMT5 (ENSSHBG00005009757) #37	SLC38A6 (ENSSHBG00005009775)	PRKCH (ENSSHBG00005009804)	HIF1A (ENSSHBG00005009819)
Golden eagle	MODERN SPECIES	11	SLC35F4 (ENSACCG00020009568) #11	ARMH4 (ENSACCG00020009606) #12	ACTR10 (ENSACCG00020009631) #13	PSMA3 (ENSACCG00020009648) #14	ARID4A (ENSACCG00020009778) #15	TIMM9 (ENSACCG00020009851)	KIAA0586 (ENSACCG00020009889) #19	DACT1 (ENSACCG00020009927) #20	ENSACCG00020009935	ENSACCG00020009941	ENSACCG00020009944	ENSACCG00020009956	ENSACCG00020009964	ENSACCG00020009974	ENSACCG00020009981	ENSACCG00020009986 #22	GPR135 (ENSACCG00020009995)	L3HYPDH (ENSACCG00020010006) #23	JKAMP (ENSACCG00020010017) #24	RTN1 (ENSACCG00020010038) #26	PCNX4 (ENSACCG00020010056) #29	DHRS7 (ENSACCG00020010064) #30	PPM1A (ENSACCG00020010079) #31	SIX6 (ENSACCG00020010087) #33	SIX1 (ENSACCG00020010095) #34	SIX4 (ENSACCG00020010100) #35	MNAT1 (ENSACCG00020010133) #36	TRMT5 (ENSACCG00020010152) #37	SLC38A6 (ENSACCG00020010165)	ENSACCG00020010171	PRKCH (ENSACCG00020010182)
Anura	ANCESTRAL SPECIES	22	ENSGT00940000155014	ENSGT00390000012837 #7	ENSGT00390000006191 #8	ENSGT00390000005665 #9	ENSGT00390000001071 #10	ENSGT00390000008727.a.b #11	ENSGT00940000155293.b	ENSGT00390000012816 #12	ENSGT00910000144250 #13	ENSGT00550000074912 #14	ENSGT00940000156159.d #15	ENSGT00940000165313	ENSGT00390000012397 #19	ENSGT00950000183181.B.a #20	ENSGT00940000164048	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000155077 #26	ENSGT00940000158583 #28	ENSGT00940000156899 #29	ENSGT00940000155226 #30	ENSGT00940000154832 #31	ENSGT00940000160091 #33	ENSGT00940000156487 #34	ENSGT00390000010439 #32	ENSGT00940000160820 #35	ENSGT00390000002319 #36	ENSGT00940000153304.B #37
Frog	MODERN SPECIES	8	ENSXETG00000045414	naa30 (ENSXETG00000011990) #9	myh4 (ENSXETG00000011987)	CCDC198 (ENSXETG00000039701) #10	slc35f4 (ENSXETG00000011984) #11	kcnk7 (ENSXETG00000011982)	armh4 (ENSXETG00000037502) #12	actr10 (ENSXETG00000011980) #13	psma3 (ENSXETG00000011978) #14	arid4a (ENSXETG00000011968) #15	timm9 (ENSXETG00000026270)	ENSXETG00000047384	kiaa0586 (ENSXETG00000011966) #19	dact1 (ENSXETG00000011962) #20	XB5727110 [provisional:kcnk16] (ENSXETG00000011960)	daam1 (ENSXETG00000017030) #22	gpr135 (ENSXETG00000044195)	l3hypdh (ENSXETG00000017026) #23	jkamp (ENSXETG00000017024) #24	ENSXETG00000040283	rtn1 (ENSXETG00000016983) #26	lrrc9 (ENSXETG00000016981) #28	ENSXETG00000034677	pcnx4 (ENSXETG00000016956) #29	dhrs7 (ENSXETG00000016955) #30	ppm1a (ENSXETG00000016952) #31	c14orf39 (ENSXETG00000048810) #32	six6 (ENSXETG00000016945) #33	six1 (ENSXETG00000016943) #34	ENSXETG00000043438	six4 (ENSXETG00000016941) #35
Leishan spiny toad	MODERN SPECIES	4	LGMN (ENSLLEG00000009706)	RIN3 (ENSLLEG00000010027)	TRIP11 (ENSLLEG00000010193)	SLC24A4 (ENSLLEG00000010580)	CPSF2 (ENSLLEG00000010714)	ENSLLEG00000010823	ENSLLEG00000010859	FBLN5 (ENSLLEG00000010940)	ENSLLEG00000011059	TC2N (ENSLLEG00000011079)	PPP4R3A (ENSLLEG00000011256)	ENSLLEG00000011823	ASB2 (ENSLLEG00000011838)	UNC79 (ENSLLEG00000011997)	ENSLLEG00000012279	DAAM1 (ENSLLEG00000012355) #22	ENSLLEG00000012822	ENSLLEG00000012875	ENSLLEG00000013537	KCNJ10 (ENSLLEG00000013630)	KCNJ9 (ENSLLEG00000013674)	IGSF8 (ENSLLEG00000013822)	ENSLLEG00000013882	RIT1 (ENSLLEG00000013907)	ENSLLEG00000013959	SYT11 (ENSLLEG00000014291)	MSTO1 (ENSLLEG00000014423)	DAP3 (ENSLLEG00000014541)	ASH1L (ENSLLEG00000014671)	RUSC1 (ENSLLEG00000014810)	FDPS (ENSLLEG00000015089)
Coelacanth	MODERN SPECIES	225	TMEM260 (ENSLACG00000018986)	OTX2 (ENSLACG00000018973)	EXOC5 (ENSLACG00000018952) #7	AP5M1 (ENSLACG00000018950) #8	NAA30 (ENSLACG00000018945) #9	SLC35F4 (ENSLACG00000018940) #11	ENSLACG00000018922	ACTR10 (ENSLACG00000018903) #13	PSMA3 (ENSLACG00000018893) #14	ARID4A (ENSLACG00000018876) #15	TIMM9 (ENSLACG00000018873)	ENSLACG00000018867 #19	IRF2BPL (ENSLACG00000018858)	DACT1 (ENSLACG00000018807) #20	ENSLACG00000018782	DAAM1 (ENSLACG00000018743) #22	L3HYPDH (ENSLACG00000018722) #23	JKAMP (ENSLACG00000018717) #24	ENSLACG00000022209	RTN1 (ENSLACG00000018687) #26	LRRC9 (ENSLACG00000018652) #28	PCNX4 (ENSLACG00000018637) #29	DHRS7 (ENSLACG00000018627) #30	PPM1A (ENSLACG00000018611) #31	C14orf39 (ENSLACG00000022366) #32	SIX6 (ENSLACG00000018574) #33	SIX1 (ENSLACG00000018541) #34	SIX4 (ENSLACG00000018526) #35	MNAT1 (ENSLACG00000018476) #36	TRMT5 (ENSLACG00000018464) #37	PRKCH (ENSLACG00000018333)
Actinopterygii	ANCESTRAL SPECIES	59	ENSGT00940000166431	ENSGT00390000012799	ENSGT00550000074824	ENSGT00390000006916.d	ENSGT00940000161442	ENSGT00940000161150	ENSGT00950000185018	ENSGT00940000162043	ENSGT00390000017800	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00940000162596	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00390000017718	ENSGT00950000182767.b.a.a	ENSGT00390000013814	ENSGT00730000111160
Reedfish	MODERN SPECIES	7	TMC4 (ENSECRG00000016604)	mboat7 (ENSECRG00000016472)	rps9 (ENSECRG00000016432)	ENSECRG00000016363	ENSECRG00000016333	dph6 (ENSECRG00000015665)	ENSECRG00000015557	cdin1 (ENSECRG00000015526)	ENSECRG00000015511	meis2b (ENSECRG00000015377)	ENSECRG00000015307	ENSECRG00000015292	ENSECRG00000015246	ENSECRG00000015208	ENSECRG00000015169	daam1b (ENSECRG00000015001) #22	GPR135 (ENSECRG00000014953)	L3HYPDH (ENSECRG00000014933) #23	ENSECRG00000014921	jkamp (ENSECRG00000014896) #24	ENSECRG00000014852	LRFN5 (ENSECRG00000014806)	ENSECRG00000014783	ENSECRG00000014767	ENSECRG00000014677	pnn (ENSECRG00000014631)	gemin2 (ENSECRG00000014596)	ENSECRG00000014540	FBXO33 (ENSECRG00000014494)	zgc:153383 (ENSECRG00000014460)	ppp2r3c (ENSECRG00000014133)
Neopterygii	ANCESTRAL SPECIES	43	ENSGT00940000166431	ENSGT00390000012799	ENSGT00550000074824	ENSGT00390000006916.d	ENSGT00940000161442	ENSGT00940000161150	ENSGT00950000185018	ENSGT00940000162043	ENSGT00390000017800	ENSGT00550000074912 #14	ENSGT00940000156159 #15	ENSGT00940000160102	ENSGT00390000012397 #19	ENSGT00940000162596	ENSGT00950000183181.B.a #20	ENSGT00940000156452 #22	ENSGT00950000182998.A	ENSGT00390000002032 #23	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00390000017718	ENSGT00950000182767.b.a.a	ENSGT00390000013814	ENSGT00730000111160
Spotted gar	MODERN SPECIES	673	BAZ1A (ENSLOCG00000009448)	srp54 (ENSLOCG00000009440)	ENSLOCG00000009429	sec23a (ENSLOCG00000009415)	ENSLOCG00000009400	SSTR1 (ENSLOCG00000017701)	TTC6 (ENSLOCG00000009393)	foxa1 (ENSLOCG00000009382)	mipol1 (ENSLOCG00000009377)	psma3 (ENSLOCG00000009368) #14	arid4a (ENSLOCG00000009355) #15	timm9 (ENSLOCG00000009345)	si:ch211-185a18.2 (ENSLOCG00000009320) #19	dact1 (ENSLOCG00000009312) #20	ENSLOCG00000009301	daam1b (ENSLOCG00000009284) #22	GPR135 (ENSLOCG00000017700)	L3HYPDH (ENSLOCG00000009274) #23	jkamp (ENSLOCG00000009267) #24	ENSLOCG00000009257	LRFN5 (ENSLOCG00000009242)	pnn (ENSLOCG00000009234)	gemin2 (ENSLOCG00000009221)	ENSLOCG00000009207	FBXO33 (ENSLOCG00000009198)	zgc:153383 (ENSLOCG00000009191)	ppp2r3c (ENSLOCG00000009180)	PRORP (ENSLOCG00000009172)	psma6a (ENSLOCG00000009164)	nfkbiab (ENSLOCG00000009153)	RALGAPA1 (ENSLOCG00000009103)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	739																ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	162												ENSGT00940000155077.w #26	ENSGT00390000002089.b	ENSGT00940000153463.a.c.a.a	ENSGT00940000160713	ENSGT00940000156452.a.a.a #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000158296.e	ENSGT00730000111160.lb	ENSGT00390000013814	ENSGT00950000182767.b.a.a	ENSGT00390000017718	ENSGT00390000016736.a.i	ENSGT00940000155583	ENSGT00390000002201	ENSGT00940000163080.b	ENSGT00940000162391.i.a	ENSGT00950000183139.B	ENSGT00940000164711.b.a.a	ENSGT00940000158474
P. kingsleyae	MODERN SPECIES	215	mnat1 (ENSPKIG00000018174) #36	six4a (ENSPKIG00000018158)	SIX1 (ENSPKIG00000018141) #34	six6a (ENSPKIG00000018123) #33	PPM1A (ENSPKIG00000018085) #31	dhrs7 (ENSPKIG00000018017) #30	pcnx4 (ENSPKIG00000017970) #29	LRRC9 (ENSPKIG00000017888) #28	ENSPKIG00000017851 #26	ENSPKIG00000017827 #26	RD3L (ENSPKIG00000017804)	tdrd9 (ENSPKIG00000017763)	atp5mj (ENSPKIG00000017743)	ppp1r13ba (ENSPKIG00000017600)	sdsl (ENSPKIG00000017535)	daam1b (ENSPKIG00000017433) #22	GPR135 (ENSPKIG00000017387)	jkamp (ENSPKIG00000017351) #24
Asian bonytongue	MODERN SPECIES	6	trmt5 (ENSSFOG00015013093) #37	mnat1 (ENSSFOG00015013061) #36	six4a (ENSSFOG00015029498)	SIX1 (ENSSFOG00015031894) #34	six6a (ENSSFOG00015013013) #33	PPM1A (ENSSFOG00015033156) #31	dhrs7 (ENSSFOG00015032508) #30	pcnx4 (ENSSFOG00015012929) #29	LRRC9 (ENSSFOG00015012861) #28	rtn1b (ENSSFOG00015012821) #26	RD3L (ENSSFOG00015012809)	tdrd9 (ENSSFOG00015012742)	ppp1r13ba (ENSSFOG00015012579)	sdsl (ENSSFOG00015012508)	sdsl (ENSSFOG00015030163)	daam1b (ENSSFOG00015012421) #22	GPR135 (ENSSFOG00015012398)	jkamp (ENSSFOG00015012380) #24	LRFN5 (ENSSFOG00015012365)	ENSSFOG00015028513	PNN (ENSSFOG00015025338)	gemin2 (ENSSFOG00015012315)	ENSSFOG00015012216	FBXO33 (ENSSFOG00015012170)	fam177a1 (ENSSFOG00015029231)	ppp2r3c (ENSSFOG00015012112)	PRORP (ENSSFOG00015012093)	nfkbiab (ENSSFOG00015012077)	INSM2 (ENSSFOG00015012029)	RALGAPA1 (ENSSFOG00015011955)	brms1la (ENSSFOG00015011926)
Osteoglossiformes	ANCESTRAL SPECIES	573																ENSGT00940000156452.a.a.b #22	ENSGT00390000002032 #23	ENSGT00390000007686.b.c.a.b
P. kingsleyae	MODERN SPECIES	134	SGPP1 (ENSPKIG00000019609)	ENSPKIG00000019616	hif1ab (ENSPKIG00000019630)	ENSPKIG00000019653	ENSPKIG00000019661	ENSPKIG00000019674	six4b (ENSPKIG00000019692)	SIX1 (ENSPKIG00000019706) #34	six6b (ENSPKIG00000019724) #33	PPM1A (ENSPKIG00000019744) #31	ENSPKIG00000019770 #26	ENSPKIG00000019792 #26	ENSPKIG00000019827	ENSPKIG00000019839	PPP1R13B (ENSPKIG00000019886)	daam1b (ENSPKIG00000020048) #22	ENSPKIG00000020224	ENSPKIG00000020229	L3HYPDH (ENSPKIG00000020240) #23	ENSPKIG00000020258	ENSPKIG00000020307	ENSPKIG00000020373	ENSPKIG00000020379	WDR20 (ENSPKIG00000020400)	ENSPKIG00000020420	ENSPKIG00000020484	ENSPKIG00000020519	ENSPKIG00000020610	ENSPKIG00000020701	ENSPKIG00000020751	ENSPKIG00000020771
Asian bonytongue	MODERN SPECIES	20	ENSSFOG00015021219	samhd1 (ENSSFOG00015002592)	samhd1 (ENSSFOG00015002440)	myh7ba (ENSSFOG00015002309)	TRPC4AP (ENSSFOG00015002204)	SLA2 (ENSSFOG00015002190)	ndrg3a (ENSSFOG00015002131)	ENSSFOG00015025052	arhgap46a (ENSSFOG00015030332)	CLASP1 (ENSSFOG00015001775)	SAMD9 (ENSSFOG00015001758)	GLI2 (ENSSFOG00015001470)	inhbb (ENSSFOG00015029754)	RALB (ENSSFOG00015031572)	epb41l5 (ENSSFOG00015001354)	DAAM1 (ENSSFOG00015029716) #22	L3HYPDH (ENSSFOG00015027099) #23	ENSSFOG00015029977	hist2h3c (ENSSFOG00015018134)	WDR20 (ENSSFOG00015001045)	hsp90aa1.2 (ENSSFOG00015000997)	ENSSFOG00015000955	si:dkey-174m14.3 (ENSSFOG00015026593)	SLC25A29 (ENSSFOG00015000907)	FKBP3 (ENSSFOG00015000874)	faua (ENSSFOG00015000850)	arf6a (ENSSFOG00015000666)	naa30 (ENSSFOG00015000656) #9	ENSSFOG00015024990	ENSSFOG00015025570	ENSSFOG00015025209
Clupeocephala	ANCESTRAL SPECIES	540														ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23
Otomorpha	ANCESTRAL SPECIES	380												ENSGT00940000156568.q	ENSGT00390000002089.b	ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b	ENSGT00970000193712
Clupeiformes	ANCESTRAL SPECIES	208								ENSGT00940000165916	ENSGT00940000156487.bb.a #34	ENSGT00940000160091 #33	ENSGT00940000154832.db.a #31	ENSGT00940000155077.u #26	ENSGT00390000002089.b	ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b	ENSGT00970000193712	ENSGT00940000154862.x.a.b	ENSGT00940000156406.b	ENSGT00940000166083	ENSGT01100000263524.D.d
Atlantic herring	MODERN SPECIES	6	ppp2r5ea (ENSCHAG00000009020)	SGPP1 (ENSCHAG00000008969)	snapc1a (ENSCHAG00000008951)	hif1ab (ENSCHAG00000003747)	prkchb (ENSCHAG00000002501)	six4b (ENSCHAG00000002381)	six1b (ENSCHAG00000016735) #34	six6b (ENSCHAG00000016726) #33	ENSCHAG00000016715	ppm1ab (ENSCHAG00000016514) #31	rtn1b (ENSCHAG00000016317) #26	ENSCHAG00000016295	ENSCHAG00000016275	atp5mj (ENSCHAG00000016255)	ppp1r13bb (ENSCHAG00000015677)	daam1b (ENSCHAG00000015238) #22	L3HYPDH (ENSCHAG00000015203) #23	ENSCHAG00000015009	esr2a (ENSCHAG00000014970)	jag2b (ENSCHAG00000013621)	nudt14 (ENSCHAG00000013575)	ENSCHAG00000013527	btbd6b (ENSCHAG00000013494)	ENSCHAG00000013429	brf1b (ENSCHAG00000013246)	xrcc3 (ENSCHAG00000013229)	ENSCHAG00000013223	ENSCHAG00000013202	ckbb (ENSCHAG00000013096)	mark3b (ENSCHAG00000010879)	clic5b (ENSCHAG00000010764)
Denticle herring	MODERN SPECIES	5	ENSDCDG00000031524	ENSDCDG00000031525	TRIB2 (ENSDCDG00000031529)	KLHL29 (ENSDCDG00000031531)	KLHL29 (ENSDCDG00000031532)	ENSDCDG00000031541	six4b (ENSDCDG00000031711)	six1b (ENSDCDG00000031712) #34	six6b (ENSDCDG00000031715) #33	ppm1ab (ENSDCDG00000031717) #31	rtn1b (ENSDCDG00000031731) #26	ENSDCDG00000031734	atp5mj (ENSDCDG00000031737)	ppp1r13bb (ENSDCDG00000031797)	ENSDCDG00000032589	daam1b (ENSDCDG00000032594) #22	L3HYPDH (ENSDCDG00000032657) #23	ENSDCDG00000032659	esr2a (ENSDCDG00000032666)	jag2b (ENSDCDG00000032719)	nudt14 (ENSDCDG00000032725)	brf1b (ENSDCDG00000032728)	btbd6b (ENSDCDG00000032750)	xrcc3 (ENSDCDG00000032752)	ckbb (ENSDCDG00000032753)	ENSDCDG00000032754	mark3b (ENSDCDG00000032789)	clic5b (ENSDCDG00000033549)	runx2b (ENSDCDG00000033553)	opn8a (ENSDCDG00000033557)	opn8b (ENSDCDG00000033560)
Otophysi	ANCESTRAL SPECIES	12																ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a	ENSGT00940000154862.x.b	ENSGT00390000016478.c.b	ENSGT01030000234613.b.a.a.c.a
Characiphysae	ANCESTRAL SPECIES	38	ENSGT00870000136554	ENSGT00940000174827	ENSGT00950000182986.a.b.a.d	ENSGT00940000158824	ENSGT00550000074694.b	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a	ENSGT00390000001660	ENSGT00940000153311.a.b.b	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b	ENSGT01030000234848	ENSGT00940000153463.a.c.b	ENSGT01100000263794	ENSGT00940000174626	ENSGT00940000155077.u #26	ENSGT00940000154832.db.a #31
Channel catfish	MODERN SPECIES	17	gpcpd1 (ENSIPUG00000019244)	Napb (ENSIPUG00000019173)	gzf1 (ENSIPUG00000019159)	trib2 (ENSIPUG00000019145)	klhl29 (ENSIPUG00000019111)	ATAD2B (ENSIPUG00000019061)	ubxn2a (ENSIPUG00000019008)	mfsd2b (ENSIPUG00000018957)	wdcp (ENSIPUG00000018933)	FKBP1B (ENSIPUG00000018910)	Mut (ENSIPUG00000018835)	opn8b (ENSIPUG00000018819)	runx2b (ENSIPUG00000018779)	clic5b (ENSIPUG00000018758)	mark3b (ENSIPUG00000018616)	DAAM1 (ENSIPUG00000018404) #22	l3hypdh (ENSIPUG00000018376) #23	ENSIPUG00000018352	ENSIPUG00000018321	esr2a (ENSIPUG00000018308)	jag2 (ENSIPUG00000018128)	nudt14 (ENSIPUG00000018103)	btbd6b (ENSIPUG00000017933)	brf1b (ENSIPUG00000017884)	ENSIPUG00000017835	CKB (ENSIPUG00000017754)	ppp1r13b (ENSIPUG00000017609)	atp5mj (ENSIPUG00000017590)	ENSIPUG00000017584	rtn1b (ENSIPUG00000017525) #26	ppm1ab (ENSIPUG00000017490) #31
Characiphysae_b	ANCESTRAL SPECIES	39	ENSGT00870000136554	ENSGT00940000174827	ENSGT00950000182986.a.b.a.d	ENSGT00940000158824	ENSGT00550000074694.b	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a	ENSGT00390000001660	ENSGT00940000153311.a.b.b	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000154656.pb.a	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b	ENSGT00940000153463.a.c.b	ENSGT01060000248685	ENSGT00390000002089.b	ENSGT00940000156568.q
Characoidei	ANCESTRAL SPECIES	41	ENSGT00390000005826.a.b.g	ENSGT00870000136554	ENSGT00950000182986.a.b.a.d	ENSGT00940000158824	ENSGT00550000074694.b	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a	ENSGT00390000001660	ENSGT00940000153311.a.b.b	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000154656.pb.a	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b
Red-bellied piranha	MODERN SPECIES	11	napbb (ENSPNAG00000003570)	ENSPNAG00000019061	TRIB2 (ENSPNAG00000019029)	KLHL29 (ENSPNAG00000019010)	ATAD2B (ENSPNAG00000018946)	UBXN2A (ENSPNAG00000018791)	mfsd2b (ENSPNAG00000018780)	wdcp (ENSPNAG00000018766)	ENSPNAG00000018741	mmut (ENSPNAG00000018712)	opn8b (ENSPNAG00000018648)	opn8a (ENSPNAG00000018619)	runx2b (ENSPNAG00000018600)	clic5b (ENSPNAG00000018531)	mark3b (ENSPNAG00000018462)	daam1b (ENSPNAG00000018221) #22	L3HYPDH (ENSPNAG00000018163) #23	ENSPNAG00000018111	ENSPNAG00000018101	ENSPNAG00000018077	esr2a (ENSPNAG00000018028)
Mexicana tetra	MODERN SPECIES	18	ENSAMXG00000002421	ENSAMXG00000002407	ENSAMXG00000030767	ENSAMXG00000039417	dsc2l (ENSAMXG00000002361)	si:dkey-5n18.1 (ENSAMXG00000032780)	cdh2 (ENSAMXG00000040605)	aqp4 (ENSAMXG00000019647)	ENSAMXG00000032444	ENSAMXG00000019513	ENSAMXG00000030268	psma8 (ENSAMXG00000038711)	ENSAMXG00000035866	clic5b (ENSAMXG00000035157)	mark3b (ENSAMXG00000001388)	daam1b (ENSAMXG00000001378) #22	L3HYPDH (ENSAMXG00000032989) #23	nudt14 (ENSAMXG00000029131)	jag2b (ENSAMXG00000020545)	esr2a (ENSAMXG00000036234)	ENSAMXG00000029675	ENSAMXG00000038470	btbd6b (ENSAMXG00000036054)	brf1b (ENSAMXG00000020489)	xrcc3 (ENSAMXG00000020479)	ENSAMXG00000032659	ckbb (ENSAMXG00000001460)	ppp1r13bb (ENSAMXG00000020459)	ENSAMXG00000034131	ENSAMXG00000020448	rtn1b (ENSAMXG00000039324) #26
Electric eel	MODERN SPECIES	2	gpcpd1 (ENSEEEG00000012466)	napbb (ENSEEEG00000012475)	ENSEEEG00000012512	ENSEEEG00000012513	TRIB2 (ENSEEEG00000012514)	KLHL29 (ENSEEEG00000012515)	ATAD2B (ENSEEEG00000012516)	UBXN2A (ENSEEEG00000012517)	mfsd2b (ENSEEEG00000012519)	wdcp (ENSEEEG00000012523)	fkbp1b (ENSEEEG00000012524)	mmut (ENSEEEG00000012526)	runx2b (ENSEEEG00000012569)	clic5b (ENSEEEG00000012658)	mark3b (ENSEEEG00000012720)	daam1b (ENSEEEG00000013248) #22	L3HYPDH (ENSEEEG00000013262) #23
Cyprinoidei	ANCESTRAL SPECIES	11	ENSGT00390000013532	ENSGT00940000153284.b	ENSGT00940000158643	ENSGT00390000011192	ENSGT00940000162578	ENSGT00940000158757	ENSGT00940000156043	ENSGT00940000175494	ENSGT00940000156021	ENSGT00940000155626	ENSGT00940000156710	ENSGT00500000044920	ENSGT00390000005261	ENSGT00940000157580.a.a	ENSGT00510000048726	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a.a.b	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b	ENSGT00940000153463.a.c.b	ENSGT01060000248685	ENSGT00940000174626.b	ENSGT00940000155077.u #26	ENSGT00940000154832.db.a #31
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	121				ENSGT00940000158643.c	ENSGT00390000011192.vb.a	ENSGT00940000162578.sc.b.a	ENSGT00940000158757.j	ENSGT00940000156043.hc	ENSGT00940000156021.h.a	ENSGT00940000155626.ld.a.b	ENSGT00940000156710.z.a	ENSGT00500000044920.d	ENSGT00390000005261.c.b	ENSGT00940000157580.a.a.a	ENSGT00510000048726.c	ENSGT00940000156452.a.a.c #22	ENSGT00390000002032 #23	ENSGT00950000182996.b.a.a.b.d.a.f.b.b.a	ENSGT00940000154656.ob.b.d	ENSGT00940000156116.B.b	ENSGT00940000164854.b.f.a.a.b	ENSGT00940000154045.b.e.a	ENSGT00390000010349.a.a.a.b.b	ENSGT00940000155720.c.a.d	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b.i	ENSGT00940000153463.a.c.b.a	ENSGT01100000263794.b	ENSGT00390000002089.b	ENSGT00940000155077.u.a #26	ENSGT00940000154832.db.a.b #31
Cyprininae_a	ANCESTRAL SPECIES	407	ENSGT00980000203285	ENSGT00390000008110.c	ENSGT00940000153284.b.x	ENSGT00940000158643.c	ENSGT00390000011192.vb.a	ENSGT00940000162578.sc.b.a	ENSGT00940000158757.j	ENSGT00940000156043.hc	ENSGT00940000156021.h.a	ENSGT00940000155626.ld.a.b	ENSGT00940000156710.z.a	ENSGT00500000044920.d	ENSGT00390000005261.c.b	ENSGT00940000157580.a.a.a	ENSGT00510000048726.c	ENSGT00940000156452.a.a.c #22	ENSGT00390000002032 #23	ENSGT00950000182996.b.a.a.b.d.a.f.b.b.a	ENSGT00940000154656.ob.b.d	ENSGT00940000156116.B.b
Common carp reference	MODERN SPECIES	34	spata18 (ENSCCRG00000034049)	usp46 (ENSCCRG00000034058)	SCFD2 (ENSCCRG00000017641)	rasl11b (ENSCCRG00000005928)	ENSCCRG00000064573	lnx1 (ENSCCRG00000008890)	gsx2 (ENSCCRG00000038849)	pdgfra (ENSCCRG00000037125)	kita (ENSCCRG00000038896)	kdr (ENSCCRG00000022891)	srd5a3 (ENSCCRG00000022915)	tmem165 (ENSCCRG00000064973)	clocka (ENSCCRG00000003591)	ENSCCRG00000075492	nmu (ENSCCRG00000001225)	daam1b (ENSCCRG00000033411) #22	ENSCCRG00000062727 #23	ENSCCRG00000033523	ENSCCRG00000002648	ENSCCRG00000066797	esr2a (ENSCCRG00000006684)	jag2b (ENSCCRG00000007251)	nudt14 (ENSCCRG00000074497)	ENSCCRG00000024274	btbd6b (ENSCCRG00000024293)	xrcc3 (ENSCCRG00000024286)	ckbb (ENSCCRG00000072264)	ppp1r13bb (ENSCCRG00000024077)	ENSCCRG00000073879	ENSCCRG00000022324	rtn1b (ENSCCRG00000008020) #26
Golden-line barbel	MODERN SPECIES	313					SCFD2 (ENSSGRG00000015304)	ENSSGRG00000015308	lnx1 (ENSSGRG00000015310)	gsx2 (ENSSGRG00000015369)	pdgfra (ENSSGRG00000015380)	kita (ENSSGRG00000015937)	kdr (ENSSGRG00000016731)	srd5a3 (ENSSGRG00000016740)	tmem165 (ENSSGRG00000016741)	clocka (ENSSGRG00000016772)	nmu (ENSSGRG00000018460)	daam1b (ENSSGRG00000018490) #22	L3HYPDH (ENSSGRG00000019674) #23	pimr151 (ENSSGRG00000019675)	ENSSGRG00000019686	ENSSGRG00000019687	jag2b (ENSSGRG00000019713)	nudt14 (ENSSGRG00000020220)
Goldfish	MODERN SPECIES	12	ENSCARG00000044189	pfas (ENSCARG00000044233)	mrpl19 (ENSCARG00000044349)	itsn2a (ENSCARG00000044409)	fam228a (ENSCARG00000044687)	ccn2a (ENSCARG00000044706)	moxd1 (ENSCARG00000044800)	epha7 (ENSCARG00000044897)	gsx2 (ENSCARG00000044940)	pdgfra (ENSCARG00000045218)	kita (ENSCARG00000049128)	kdr (ENSCARG00000050175)	tmem165 (ENSCARG00000050481)	clocka (ENSCARG00000050592)	nmu (ENSCARG00000051614)	daam1b (ENSCARG00000051851) #22	L3HYPDH (ENSCARG00000052080) #23	ENSCARG00000052095	ENSCARG00000052145	esr2a (ENSCARG00000052187)	fryl (ENSCARG00000052352)	ociad1 (ENSCARG00000052634)	ociad2 (ENSCARG00000052643)	dcun1d4 (ENSCARG00000052659)	ENSCARG00000052740	sgcb (ENSCARG00000052785)	spata18 (ENSCARG00000052868)	usp46 (ENSCARG00000052907)	rasl11b (ENSCARG00000053044)	SCFD2 (ENSCARG00000053067)	ENSCARG00000053102
Cyprininae	ANCESTRAL SPECIES	101	ENSGT00940000153284.b.w.a	ENSGT00940000153284.b.w.b	ENSGT00940000158643.d	ENSGT00390000011192.wb	ENSGT00940000162578.sc.b.b	ENSGT00940000158757.i	ENSGT00940000156043.ic	ENSGT00940000175494	ENSGT00940000156021.h.b	ENSGT00940000155626.ld.a.a	ENSGT00940000156710.z.b	ENSGT00500000044920.c	ENSGT00390000005261.d	ENSGT00940000157580.a.a.b	ENSGT00510000048726.d	ENSGT00940000156452.a.a.d #22	ENSGT00940000154656.ob.b.c.b	ENSGT00940000156116.B.a	ENSGT00940000164854.b.f.b	ENSGT00940000166988	ENSGT00390000010349.a.a.b	ENSGT00940000155720.c.a.c	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a.a.b.a	ENSGT00950000182772.A.a.b.`b.b.j	ENSGT00940000153463.a.c.b.b	ENSGT01100000263794.a	ENSGT00940000174626.b	ENSGT00940000174626.a	ENSGT00940000155077.u.b #26	ENSGT00940000154832.db.a.a #31
Goldfish	MODERN SPECIES	39	sgcb (ENSCARG00000016371)	usp46 (ENSCARG00000016391)	ENSCARG00000016472	rasl11b (ENSCARG00000016476)	SCFD2 (ENSCARG00000016491)	ENSCARG00000016514	lnx1 (ENSCARG00000016553)	gsx2 (ENSCARG00000016582)	pdgfra (ENSCARG00000016648)	kita (ENSCARG00000017223)	kdr (ENSCARG00000019566)	srd5a3 (ENSCARG00000019904)	tmem165 (ENSCARG00000019914)	clocka (ENSCARG00000019991)	nmu (ENSCARG00000022117)	daam1b (ENSCARG00000022457) #22	ENSCARG00000022525	ENSCARG00000022530	ENSCARG00000022534	ENSCARG00000022542	ENSCARG00000022546	ENSCARG00000022554	ENSCARG00000022559	ENSCARG00000022566	esr2a (ENSCARG00000022578)	jag2b (ENSCARG00000022626)	nudt14 (ENSCARG00000022714)	ENSCARG00000022727	brf1b (ENSCARG00000022748)	btbd6b (ENSCARG00000022849)	ENSCARG00000022857
Cyprininae_a	ANCESTRAL SPECIES	34	ENSGT00940000153284.b.w.a	ENSGT00940000153284.b.w.b	ENSGT00940000158643.d	ENSGT00390000011192.wb	ENSGT00940000162578.sc.b.b	ENSGT00940000158757.i	ENSGT00940000156043.ic	ENSGT00940000175494	ENSGT00940000156021.h.b	ENSGT00940000155626.ld.a.a	ENSGT00940000156710.z.b	ENSGT00500000044920.c	ENSGT00390000005261.d	ENSGT00940000157580.a.a.b	ENSGT00510000048726.d	ENSGT00940000156452.a.a.d #22	ENSGT00940000154656.ob.b.c.a	ENSGT00940000156116.B.a	ENSGT00940000164854.b.f.b	ENSGT00940000166988	ENSGT00390000010349.a.a.b	ENSGT00940000155720.c.a.c	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a.a.b.a	ENSGT00950000182772.A.a.b.`b.b.j	ENSGT00940000153463.a.c.b.b	ENSGT01100000263794.a	ENSGT00940000174626.b	ENSGT00940000155077.u.b #26	ENSGT00940000154832.db.a.a #31	ENSGT00940000160091.f.b.a #33
Common carp reference	MODERN SPECIES	28	dcun1d4 (ENSCCRG00000008818)	ENSCCRG00000072074	usp46 (ENSCCRG00000070413)	rasl11b (ENSCCRG00000065537)	SCFD2 (ENSCCRG00000039417)	ENSCCRG00000039407	lnx1 (ENSCCRG00000016556)	gsx2 (ENSCCRG00000072413)	pdgfra (ENSCCRG00000033797)	kita (ENSCCRG00000031619)	srd5a3 (ENSCCRG00000003520)	kdr (ENSCCRG00000033392)	tmem165 (ENSCCRG00000003531)	clocka (ENSCCRG00000023096)	nmu (ENSCCRG00000015667)	daam1b (ENSCCRG00000036171) #22	ENSCCRG00000070276 #23	ENSCCRG00000065747	ENSCCRG00000076845	ENSCCRG00000009170	esr2a (ENSCCRG00000021944)	jag2b (ENSCCRG00000022420)	ENSCCRG00000055228	nudt14 (ENSCCRG00000076961)	btbd6b (ENSCCRG00000030019)	ENSCCRG00000030013	ENSCCRG00000030004	brf1b (ENSCCRG00000055583)	ckbb (ENSCCRG00000023971)	ppp1r13bb (ENSCCRG00000027331)	ENSCCRG00000008044
Golden-line barbel	MODERN SPECIES	1213														clocka (ENSSGRG00000022051)	nmu (ENSSGRG00000022036)	daam1b (ENSSGRG00000020707) #22	ENSSGRG00000020681	ENSSGRG00000020667
Zebrafish	MODERN SPECIES	12	usp46 (ENSDARG00000045343)	rasl11b (ENSDARG00000015611)	ENSDARG00000093336	ENSDARG00000115492	scfd2 (ENSDARG00000040005)	ENSDARG00000043328	lnx1 (ENSDARG00000043323)	gsx2 (ENSDARG00000043322)	pdgfra (ENSDARG00000070494)	kita (ENSDARG00000043317)	kdr (ENSDARG00000017321)	srd5a3 (ENSDARG00000043307)	tmem165 (ENSDARG00000034600)	clocka (ENSDARG00000011703)	nmu (ENSDARG00000043299)	daam1b (ENSDARG00000009689) #22	syne2a (ENSDARG00000030107)	esr2a (ENSDARG00000016454)	jag2b (ENSDARG00000021389)	nudt14 (ENSDARG00000062335)	ENSDARG00000094224	btbd6b (ENSDARG00000032369)	brf1b (ENSDARG00000005002)	xrcc3 (ENSDARG00000017928)	ckbb (ENSDARG00000043257)	ppp1r13bb (ENSDARG00000009142)	atp5mj (ENSDARG00000092873)	ENSDARG00000091135	rtn1b (ENSDARG00000021143) #26	ENSDARG00000092770	ppm1ab (ENSDARG00000043250) #31
Euteleosteomorpha	ANCESTRAL SPECIES	409														ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23
Acanthomorphata	ANCESTRAL SPECIES	59	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a
Cod	MODERN SPECIES	13	ENSGMOG00000020564	ENSGMOG00000011891	ENSGMOG00000011897	ENSGMOG00000011903	ENSGMOG00000031975	ENSGMOG00000004081	ENSGMOG00000018136	ENSGMOG00000010799	ENSGMOG00000010807	ctsbb (ENSGMOG00000010815)	ENSGMOG00000010822	gata4 (ENSGMOG00000010832)	ENSGMOG00000010842	ENSGMOG00000010867	ENSGMOG00000010873	ENSGMOG00000010891 #22	ENSGMOG00000010917 #23	ENSGMOG00000010926	ENSGMOG00000010945	ENSGMOG00000010957	ENSGMOG00000010975	eif2b2 (ENSGMOG00000011032)	tmed10 (ENSGMOG00000011041)	fosab (ENSGMOG00000032190)	ENSGMOG00000011052	ENSGMOG00000011063	ENSGMOG00000025816	DLST (ENSGMOG00000011068)	ENSGMOG00000011081	YLPM1 (ENSGMOG00000011089)	ENSGMOG00000011117
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Pinecone sodierfish	MODERN SPECIES	16	prox1a (ENSMMDG00005022034)	rps6kc1 (ENSMMDG00005022048)	ENSMMDG00005022061	SNX9 (ENSMMDG00005022117)	ENSMMDG00005022952	kcnk2b (ENSMMDG00005022955)	ABHD1 (ENSMMDG00005022961)	fdft1 (ENSMMDG00005023104)	gata4 (ENSMMDG00005023111)	ctsbb (ENSMMDG00005023115)	ENSMMDG00005023117	NCOA7 (ENSMMDG00005023120)	ENSMMDG00005023124	ENSMMDG00005023126	ppp1r13bb (ENSMMDG00005023164)	daam1b (ENSMMDG00005023665) #22	L3HYPDH (ENSMMDG00005023696) #23	kcnh5a (ENSMMDG00005023702)	ENSMMDG00005023704	abcd4 (ENSMMDG00005023733)	ENSMMDG00005023918	vsx2 (ENSMMDG00005023942)	eif2b2 (ENSMMDG00005023950)	tmed10 (ENSMMDG00005023955)	fosab (ENSMMDG00005023962)	ENSMMDG00005023972	JDP2 (ENSMMDG00005024081)	DLST (ENSMMDG00005024090)	ENSMMDG00005024112	ENSMMDG00005024114	YLPM1 (ENSMMDG00005024116)
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Pomacentridae	ANCESTRAL SPECIES	34	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253.e	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Pomacentridae_A	ANCESTRAL SPECIES	33	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253.e	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Amphiprion	ANCESTRAL SPECIES	51	ENSGT00390000009312.a	ENSGT00940000157865	ENSGT00940000177253	ENSGT00940000153511.b.r	ENSGT00950000182856.a.b.b	ENSGT00530000063775.a.b	ENSGT00390000013856	ENSGT01010000222287.B.b.a.b.b.a	ENSGT00530000063503.a.b.g.a.f	ENSGT00530000063503.a.b.g.a.e	ENSGT00940000156078.d	ENSGT00940000155724.r	ENSGT00950000182852.A.a.a.a	ENSGT00390000004660.C.a.a.d	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253.e	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Orange clownfish	MODERN SPECIES	2	ENSAPEG00000021146	ENSAPEG00000021166	syncrip (ENSAPEG00000021185)	snx14 (ENSAPEG00000021243)	NT5E (ENSAPEG00000021409)	mei4 (ENSAPEG00000021444)	HTR1B (ENSAPEG00000000304)	ENSAPEG00000000362	ENSAPEG00000000371	myo6a (ENSAPEG00000000388)	SENP6 (ENSAPEG00000000551)	FILIP1 (ENSAPEG00000000574)	tmem30ab (ENSAPEG00000000604)	ercc4 (ENSAPEG00000000628)	ppp1r13bb (ENSAPEG00000000846)	daam1b (ENSAPEG00000000913) #22	L3HYPDH (ENSAPEG00000000958) #23	kcnh5a (ENSAPEG00000001002)	SGPP1 (ENSAPEG00000001044)	abcd4 (ENSAPEG00000001064)	ENSAPEG00000001198	ENSAPEG00000001297	vsx2 (ENSAPEG00000001332)	eif2b2 (ENSAPEG00000001351)	tmed10 (ENSAPEG00000001388)	fosab (ENSAPEG00000001415)	ENSAPEG00000001432	jdp2b (ENSAPEG00000001618)	ENSAPEG00000001634	DLST (ENSAPEG00000001698)	ENSAPEG00000001710
Clown anemonefish	MODERN SPECIES	677											SENP6 (ENSAOCG00000001966)	FILIP1 (ENSAOCG00000007092)	tmem30ab (ENSAOCG00000007061)	ercc4 (ENSAOCG00000007043)	ppp1r13bb (ENSAOCG00000006986)	daam1b (ENSAOCG00000006875) #22	L3HYPDH (ENSAOCG00000006795) #23	kcnh5a (ENSAOCG00000006770)	SGPP1 (ENSAOCG00000006736)	abcd4 (ENSAOCG00000006717)	ENSAOCG00000006637	vsx2 (ENSAOCG00000006547)	eif2b2 (ENSAOCG00000006456)
Spiny chromis	MODERN SPECIES	653													NCOA7 (ENSAPOG00000020115)	ENSAPOG00000020023	ppp1r13bb (ENSAPOG00000020002)	daam1b (ENSAPOG00000019861) #22	L3HYPDH (ENSAPOG00000019797) #23	kcnh5a (ENSAPOG00000019781)	SGPP1 (ENSAPOG00000019711)	abcd4 (ENSAPOG00000019702)	ENSAPOG00000019610	vsx2 (ENSAPOG00000019555)	eif2b2 (ENSAPOG00000000548)	tmed10 (ENSAPOG00000000540)	fosab (ENSAPOG00000019454)	ENSAPOG00000019449
Bicolor damselfish	MODERN SPECIES	1033				ENSSPAG00000005343	ABHD1 (ENSSPAG00000005331)	ENSSPAG00000005319	ENSSPAG00000005311	ctsbb (ENSSPAG00000005283)	fdft1 (ENSSPAG00000005236)	gata4 (ENSSPAG00000005162)	ENSSPAG00000005149	ENSSPAG00000005121	ENSSPAG00000005110	ENSSPAG00000005094	ppp1r13bb (ENSSPAG00000004966)	daam1b (ENSSPAG00000004896) #22	L3HYPDH (ENSSPAG00000004865) #23	kcnh5a (ENSSPAG00000004834)	ENSSPAG00000004824	abcd4 (ENSSPAG00000004762)	ENSSPAG00000004711
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00730000111174.f	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00730000111174.f	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d.c	ENSGT00950000182902.a.d.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349.p	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00730000111174.f	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d.c	ENSGT00950000182902.a.d.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349.p	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00730000111174.f	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d.c	ENSGT00950000182902.a.d.d	ENSGT00940000166128.c	ENSGT00390000016034	ENSGT00940000158349.p	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00730000111174.f	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Zebra mbuna	MODERN SPECIES	1097	SNX9 (ENSMZEG00005016760)	ENSMZEG00005016750	kcnk2b (ENSMZEG00005016731)	ENSMZEG00005016725	ENSMZEG00005016721	ENSMZEG00005016701	ctsbb (ENSMZEG00005016694)	ctsbb (ENSMZEG00005016681)	fdft1 (ENSMZEG00005016673)	gata4 (ENSMZEG00005016668)	ENSMZEG00005016663	ENSMZEG00005016662	cfap45 (ENSMZEG00005016659)	ENSMZEG00005016655	ppp1r13bb (ENSMZEG00005016646)	daam1b (ENSMZEG00005016609) #22	L3HYPDH (ENSMZEG00005016595) #23	ENSMZEG00005016585	ENSMZEG00005016583	abcd4 (ENSMZEG00005016566)	ENSMZEG00005016539	vsx2 (ENSMZEG00005016530)	eif2b2 (ENSMZEG00005016450)	tmed10 (ENSMZEG00005016445)	fosab (ENSMZEG00005016439)	ENSMZEG00005016427	jdp2b (ENSMZEG00005016423)	ENSMZEG00005016419	DLST (ENSMZEG00005016409)	ENSMZEG00005016401	YLPM1 (ENSMZEG00005016383)
Eastern happy	MODERN SPECIES	6	ENSACLG00000014824	SNX9 (ENSACLG00000014580)	ENSACLG00000014541	kcnk2b (ENSACLG00000014487)	ENSACLG00000014418	ENSACLG00000014401	ENSACLG00000014393	ctsbb (ENSACLG00000014361)	fdft1 (ENSACLG00000014331)	gata4 (ENSACLG00000014316)	ENSACLG00000014282	ENSACLG00000014265	cfap45 (ENSACLG00000014253)	ENSACLG00000014246	ppp1r13bb (ENSACLG00000013884)	daam1b (ENSACLG00000013675) #22	L3HYPDH (ENSACLG00000013408) #23	ENSACLG00000013387	SGPP1 (ENSACLG00000013382)	abcd4 (ENSACLG00000013349)	ENSACLG00000013330	vsx2 (ENSACLG00000013323)	eif2b2 (ENSACLG00000013294)	tmed10 (ENSACLG00000013280)	ENSACLG00000013275	fosab (ENSACLG00000013269)	ENSACLG00000013262	jdp2b (ENSACLG00000013258)	ENSACLG00000013199	DLST (ENSACLG00000013180)	ENSACLG00000013177
P. nyererei	MODERN SPECIES	353	prox1a (ENSPNYG00000009378)	rps6kc1 (ENSPNYG00000009316)	ENSPNYG00000009274	SNX9 (ENSPNYG00000009183)	ENSPNYG00000009021	kcnk2b (ENSPNYG00000008908)	ENSPNYG00000008873	ENSPNYG00000008838	fdft1 (ENSPNYG00000008796)	gata4 (ENSPNYG00000008780)	ENSPNYG00000008766	ENSPNYG00000008713	ENSPNYG00000008699	cfap45 (ENSPNYG00000008667)	ppp1r13bb (ENSPNYG00000008590)	daam1b (ENSPNYG00000008482) #22	L3HYPDH (ENSPNYG00000008417) #23	kcnh5a (ENSPNYG00000008374)	SGPP1 (ENSPNYG00000008350)	abcd4 (ENSPNYG00000008312)	ENSPNYG00000008264	vsx2 (ENSPNYG00000008171)	eif2b2 (ENSPNYG00000008123)	tmed10 (ENSPNYG00000008096)	fosab (ENSPNYG00000008073)	ENSPNYG00000007896	jdp2b (ENSPNYG00000007866)	DLST (ENSPNYG00000007848)	ENSPNYG00000007842	YLPM1 (ENSPNYG00000007791)	esrrb (ENSPNYG00000007760)
Burton s mouthbrooder	MODERN SPECIES	276	SNX9 (ENSHBUG00000011134)	ENSHBUG00000011150	kcnk2b (ENSHBUG00000011176)	ENSHBUG00000011231	ENSHBUG00000011462	ENSHBUG00000011479	ctsbb (ENSHBUG00000011508)	fdft1 (ENSHBUG00000000314)	gata4 (ENSHBUG00000011525)	ENSHBUG00000011535	ENSHBUG00000011597	ENSHBUG00000011601	cfap45 (ENSHBUG00000011608)	ENSHBUG00000011631	ppp1r13bb (ENSHBUG00000011733)	daam1b (ENSHBUG00000011796) #22	L3HYPDH (ENSHBUG00000011810) #23	kcnh5a (ENSHBUG00000011838)	ENSHBUG00000011846	abcd4 (ENSHBUG00000011978)	ENSHBUG00000012052	vsx2 (ENSHBUG00000012075)	eif2b2 (ENSHBUG00000012113)	tmed10 (ENSHBUG00000012126)	fosab (ENSHBUG00000012155)	ENSHBUG00000012204	jdp2b (ENSHBUG00000012218)	ENSHBUG00000012234	DLST (ENSHBUG00000012267)	ENSHBUG00000012272	YLPM1 (ENSHBUG00000012325)
Lyretail cichlid	MODERN SPECIES	338	ENSNBRG00000017813	SNX9 (ENSNBRG00000017834)	ENSNBRG00000017925	kcnk2b (ENSNBRG00000018071)	ENSNBRG00000018096	ENSNBRG00000018131	ENSNBRG00000018182	ctsbb (ENSNBRG00000018306)	fdft1 (ENSNBRG00000018326)	gata4 (ENSNBRG00000018383)	NCOA7 (ENSNBRG00000018393)	ENSNBRG00000018411	cfap45 (ENSNBRG00000018424)	ENSNBRG00000018451	ppp1r13bb (ENSNBRG00000018494)	daam1b (ENSNBRG00000018527) #22	L3HYPDH (ENSNBRG00000018569) #23	ENSNBRG00000018603	SGPP1 (ENSNBRG00000018629)	abcd4 (ENSNBRG00000018653)	ENSNBRG00000018707	vsx2 (ENSNBRG00000018743)	eif2b2 (ENSNBRG00000018798)	tmed10 (ENSNBRG00000018828)	fosab (ENSNBRG00000018852)	ENSNBRG00000018888	jdp2b (ENSNBRG00000018983)	DLST (ENSNBRG00000019002)	ENSNBRG00000019031	ENSNBRG00000019044	YLPM1 (ENSNBRG00000019064)
Nile tilapia	MODERN SPECIES	6	ENSONIG00000013521	SNX9 (ENSONIG00000013524)	ENSONIG00000013537	KCNK2 (ENSONIG00000013538)	ENSONIG00000013541	ABHD1 (ENSONIG00000013550)	ctsbb (ENSONIG00000040884)	ctsbb (ENSONIG00000038588)	fdft1 (ENSONIG00000013551)	gata4 (ENSONIG00000013554)	NCOA7 (ENSONIG00000013557)	HINT3 (ENSONIG00000013561)	ENSONIG00000041404	ENSONIG00000013564	ppp1r13bb (ENSONIG00000013567)	daam1b (ENSONIG00000013573) #22	L3HYPDH (ENSONIG00000013579) #23	KCNH5 (ENSONIG00000013580)	SGPP1 (ENSONIG00000030916)	abcd4 (ENSONIG00000013589)	ENSONIG00000013592	vsx2 (ENSONIG00000013597)	eif2b2 (ENSONIG00000015252)	tmed10 (ENSONIG00000015257)	fosab (ENSONIG00000036571)	ENSONIG00000015266	jdp2b (ENSONIG00000015268)	ENSONIG00000015269	DLST (ENSONIG00000015272)	ENSONIG00000038853	YLPM1 (ENSONIG00000015280)
Midas cichlid	MODERN SPECIES	271	rps6kc1 (ENSACIG00000005250)	ENSACIG00000005222	SNX9 (ENSACIG00000005187)	ENSACIG00000005130	kcnk2b (ENSACIG00000005070)	ENSACIG00000005027	ENSACIG00000004910	ctsbb (ENSACIG00000004873)	fdft1 (ENSACIG00000004817)	gata4 (ENSACIG00000004792)	ENSACIG00000004787	ENSACIG00000004773	ENSACIG00000004761	ENSACIG00000004714	ppp1r13bb (ENSACIG00000004683)	daam1b (ENSACIG00000004636) #22	L3HYPDH (ENSACIG00000004618) #23	kcnh5a (ENSACIG00000004587)	ENSACIG00000004575	abcd4 (ENSACIG00000004535)	ENSACIG00000004498	vsx2 (ENSACIG00000004475)	eif2b2 (ENSACIG00000004446)	tmed10 (ENSACIG00000004425)	fosab (ENSACIG00000004214)	ENSACIG00000004076	jdp2b (ENSACIG00000004052)	DLST (ENSACIG00000004017)	ENSACIG00000004001	YLPM1 (ENSACIG00000003919)	esrrb (ENSACIG00000003902)
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e
Aplocheiloidei	ANCESTRAL SPECIES	36	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000178926	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e
Mangrove rivulus	MODERN SPECIES	70	prox1a (ENSKMAG00000011924)	rps6kc1 (ENSKMAG00000011947)	ENSKMAG00000011979	SNX9 (ENSKMAG00000012008)	ENSKMAG00000012063	kcnk2b (ENSKMAG00000012086)	ENSKMAG00000012115	ENSKMAG00000012175	ctsbb (ENSKMAG00000012243)	fdft1 (ENSKMAG00000012281)	gata4 (ENSKMAG00000012323)	ENSKMAG00000012337	ENSKMAG00000012346	ENSKMAG00000012361	ppp1r13bb (ENSKMAG00000012386)	daam1b (ENSKMAG00000012440) #22	L3HYPDH (ENSKMAG00000012501) #23	KCNH5 (ENSKMAG00000012537)
Turquoise killifish	MODERN SPECIES	1613	smyd2b (ENSNFUG00015004273)	ENSNFUG00015004257	PROX1 (ENSNFUG00015004242)	RPS6KC1 (ENSNFUG00015004163)	ENSNFUG00015004139	ENSNFUG00015004132	SNX9 (ENSNFUG00015004002)	KCNK2B (ENSNFUG00015003932)	ABHD1 (ENSNFUG00015003927)	ctsbb (ENSNFUG00015003917)	FDFT1 (ENSNFUG00015003910)	gata4 (ENSNFUG00015003901)	NCOA7 (ENSNFUG00015003895)	ENSNFUG00015003889	ENSNFUG00015003887	DAAM1B (ENSNFUG00015003756) #22	CABZ01039235.1 (ENSNFUG00015003724) #23	kcnh5a (ENSNFUG00015003719)	SGPP1 (ENSNFUG00015003712)	ABCD4 (ENSNFUG00015003638)	ENSNFUG00015003592	ENSNFUG00015003577	UTRN (ENSNFUG00015003325)	EPM2A (ENSNFUG00015003246)	ENSNFUG00015003224	fbxo30b (ENSNFUG00015003214)	GRM1 (ENSNFUG00015003205)	RAB32A (ENSNFUG00015003194)	stxbp5a (ENSNFUG00015003084)	SAMD5 (ENSNFUG00015003021)	sash1a (ENSNFUG00015002986)
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a
NAME_4	ANCESTRAL SPECIES	8	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a	ENSGT00940000164930.b
Mummichog	MODERN SPECIES	2240	prox1a (ENSFHEG00000001147)	rps6kc1 (ENSFHEG00000001150)	ENSFHEG00000001154	SNX9 (ENSFHEG00000001170)	ENSFHEG00000000050	kcnk2b (ENSFHEG00000001196)	ENSFHEG00000001199	ENSFHEG00000001201	ENSFHEG00000001206	ctsbb (ENSFHEG00000001209)	fdft1 (ENSFHEG00000001212)	gata4 (ENSFHEG00000001214)	NCOA7 (ENSFHEG00000001220)	ENSFHEG00000001227	ppp1r13bb (ENSFHEG00000001247)	daam1b (ENSFHEG00000001262) #22	L3HYPDH (ENSFHEG00000001273) #23	kcnh5a (ENSFHEG00000001276)	SGPP1 (ENSFHEG00000001281)	abcd4 (ENSFHEG00000001288)	ENSFHEG00000001297	vsx2 (ENSFHEG00000001302)	batf (ENSFHEG00000001304)	FLVCR2 (ENSFHEG00000001312)	TGFB3 (ENSFHEG00000001318)	esrrb (ENSFHEG00000001330)	YLPM1 (ENSFHEG00000001344)	ENSFHEG00000001353	DLST (ENSFHEG00000001363)	JDP2 (ENSFHEG00000001367)	ENSFHEG00000001372
Sheepshead minnow	MODERN SPECIES	116	prox1a (ENSCVAG00000022069)	rps6kc1 (ENSCVAG00000022089)	ENSCVAG00000022097	SNX9 (ENSCVAG00000022206)	ENSCVAG00000022220	kcnk2b (ENSCVAG00000022243)	ENSCVAG00000022279	ABHD1 (ENSCVAG00000022287)	ctsbb (ENSCVAG00000022308)	fdft1 (ENSCVAG00000022314)	gata4 (ENSCVAG00000022324)	ENSCVAG00000022331	ENSCVAG00000022346	ENSCVAG00000000732	ppp1r13bb (ENSCVAG00000022434)	daam1b (ENSCVAG00000022472) #22	L3HYPDH (ENSCVAG00000022480) #23	kcnh5a (ENSCVAG00000022520)	SGPP1 (ENSCVAG00000022532)	abcd4 (ENSCVAG00000022611)	ENSCVAG00000022663	vsx2 (ENSCVAG00000022693)	batf (ENSCVAG00000022701)	FLVCR2 (ENSCVAG00000022708)	TGFB3 (ENSCVAG00000022713)	esrrb (ENSCVAG00000022733)	YLPM1 (ENSCVAG00000022796)	ENSCVAG00000022806	DLST (ENSCVAG00000022836)	jdp2b (ENSCVAG00000022845)	ENSCVAG00000022851
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.x	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT01030000234625.B.d.d.b.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a
Poecilia	ANCESTRAL SPECIES	9	ENSGT00940000166832	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837.k	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a.f	ENSGT00940000155693.a.a.e
NAME_6	ANCESTRAL SPECIES	2	ENSGT00940000166832	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000168254	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b	ENSGT00940000155747.g.b	ENSGT00940000153433.A.e	ENSGT00440000039837.k	ENSGT00940000154790.b.a.a	ENSGT00930000151014.r	ENSGT00940000155693.a.a.f	ENSGT00940000155693.a.a.e
Sailfin molly	MODERN SPECIES	322														ENSPLAG00000014921	ppp1r13bb (ENSPLAG00000014905)	daam1b (ENSPLAG00000000519) #22	L3HYPDH (ENSPLAG00000014791) #23	kcnh5a (ENSPLAG00000014782)	SGPP1 (ENSPLAG00000014751)	abcd4 (ENSPLAG00000014741)	ENSPLAG00000014699	ENSPLAG00000014652	batf (ENSPLAG00000014633)	FLVCR2 (ENSPLAG00000014624)	TGFB3 (ENSPLAG00000014592)	esrrb (ENSPLAG00000014582)	ENSPLAG00000014558
Amazon molly	MODERN SPECIES	304	smyd2b (ENSPFOG00000003553)	prox1a (ENSPFOG00000003774)	rps6kc1 (ENSPFOG00000003901)	ENSPFOG00000004129	SNX9 (ENSPFOG00000004400)	ENSPFOG00000004737	kcnk2b (ENSPFOG00000004806)	ENSPFOG00000005024	ENSPFOG00000005269	ctsbb (ENSPFOG00000005337)	fdft1 (ENSPFOG00000005358)	gata4 (ENSPFOG00000022572)	NCOA7 (ENSPFOG00000005513)	ENSPFOG00000005680	ppp1r13bb (ENSPFOG00000005703)	daam1b (ENSPFOG00000005990) #22	L3HYPDH (ENSPFOG00000006416) #23	kcnh5a (ENSPFOG00000006503)	ENSPFOG00000006631	abcd4 (ENSPFOG00000006709)	ENSPFOG00000006934	batf (ENSPFOG00000007199)	FLVCR2 (ENSPFOG00000007223)	TGFB3 (ENSPFOG00000007494)	esrrb (ENSPFOG00000007540)	YLPM1 (ENSPFOG00000007687)	ENSPFOG00000007812	ENSPFOG00000024079	DLST (ENSPFOG00000007814)	JDP2 (ENSPFOG00000007886)	JDP2 (ENSPFOG00000007903)
Guppy	MODERN SPECIES	452	prox1a (ENSPREG00000000769)	rps6kc1 (ENSPREG00000000738)	ENSPREG00000000670	SNX9 (ENSPREG00000000638)	ENSPREG00000000624	kcnk2b (ENSPREG00000020326)	ENSPREG00000020313	ENSPREG00000020292	ABHD1 (ENSPREG00000020269)	ctsbb (ENSPREG00000020258)	fdft1 (ENSPREG00000020248)	gata4 (ENSPREG00000020235)	NCOA7 (ENSPREG00000020213)	ENSPREG00000020200	ppp1r13bb (ENSPREG00000020137)	daam1b (ENSPREG00000020021) #22	L3HYPDH (ENSPREG00000019977) #23	kcnh5a (ENSPREG00000019954)	ENSPREG00000019931	abcd4 (ENSPREG00000019886)	ENSPREG00000019814	vsx2 (ENSPREG00000019795)	ENSPREG00000019767	batf (ENSPREG00000019749)	FLVCR2 (ENSPREG00000019720)	ENSPREG00000019682	TGFB3 (ENSPREG00000019674)	esrrb (ENSPREG00000019646)	YLPM1 (ENSPREG00000019611)	ENSPREG00000019593	DLST (ENSPREG00000019575)
Platyfish	MODERN SPECIES	6	rps6kc1 (ENSXMAG00000003715)	ENSXMAG00000003722	SNX9 (ENSXMAG00000003732)	ENSXMAG00000003752	KCNK2 (ENSXMAG00000021485)	ENSXMAG00000024204	ABHD1 (ENSXMAG00000003774)	ctsbb (ENSXMAG00000003780)	fdft1 (ENSXMAG00000003786)	ENSXMAG00000024126	gata4 (ENSXMAG00000009238)	ENSXMAG00000022620	ENSXMAG00000030054	ENSXMAG00000003810	ppp1r13bb (ENSXMAG00000003812)	daam1b (ENSXMAG00000003836) #22	L3HYPDH (ENSXMAG00000003859) #23	kcnh5a (ENSXMAG00000003864)	SGPP1 (ENSXMAG00000022329)	abcd4 (ENSXMAG00000003885)	ENSXMAG00000029801	vsx2 (ENSXMAG00000024293)	batf (ENSXMAG00000025113)	FLVCR2 (ENSXMAG00000003955)	TGFB3 (ENSXMAG00000003970)	esrrb (ENSXMAG00000003978)	YLPM1 (ENSXMAG00000003988)	ENSXMAG00000004000	DLST (ENSXMAG00000022519)	JDP2 (ENSXMAG00000025219)	ENSXMAG00000013196
Oryzias	ANCESTRAL SPECIES	69				ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00530000063775.a.b	ENSGT00940000154550.a	ENSGT00950000182852.A.a.a.a
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00950000182966.A.a.a.i.c.b.a	ENSGT00950000182966.A.a.a.i.c.a.a.a.a	ENSGT00950000182966.A.a.a.i.c.a.a.a.b	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00950000182852.A.a.a.a	ENSGT00940000154550.a	ENSGT00530000063775.a.b	ENSGT00940000155693.a.a	ENSGT00940000164930.b	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000155724.r
Javanese ricefish	MODERN SPECIES	16	zgc:194202 (ENSOJAG00000008217)	ENSOJAG00000008247	ENSOJAG00000008257	ENSOJAG00000008266	SNX9 (ENSOJAG00000008311)	ENSOJAG00000008835	kcnk2b (ENSOJAG00000008846)	ENSOJAG00000008865	ABHD1 (ENSOJAG00000008887)	ctsbb (ENSOJAG00000008909)	fdft1 (ENSOJAG00000009013)	gata4 (ENSOJAG00000009077)	NCOA7 (ENSOJAG00000009107)	ENSOJAG00000009132	ppp1r13bb (ENSOJAG00000009319)	daam1b (ENSOJAG00000010373) #22	L3HYPDH (ENSOJAG00000010931) #23	kcnh5a (ENSOJAG00000010939)	SGPP1 (ENSOJAG00000010992)	abcd4 (ENSOJAG00000011060)	ENSOJAG00000011695	vsx2 (ENSOJAG00000012286)	eif2b2 (ENSOJAG00000012403)	FILIP1 (ENSOJAG00000012428)	COX7A2 (ENSOJAG00000012433)	NT5E (ENSOJAG00000012499)	jdp2b (ENSOJAG00000013063)	ENSOJAG00000013078	fosab (ENSOJAG00000013093)	tmed10 (ENSOJAG00000013126)	SENP6 (ENSOJAG00000013200)
Indian medaka	MODERN SPECIES	22	fosab (ENSOMEG00000020744)	ENSOMEG00000020753	jdp2b (ENSOMEG00000020762)	KCNK2 (ENSOMEG00000020822)	ENSOMEG00000020847	ENSOMEG00000020852	ABHD1 (ENSOMEG00000020885)	ctsbb (ENSOMEG00000020921)	fdft1 (ENSOMEG00000020947)	gata4 (ENSOMEG00000020993)	ENSOMEG00000021005	ENSOMEG00000021020	ENSOMEG00000021030	ENSOMEG00000021063	ppp1r13bb (ENSOMEG00000021175)	daam1b (ENSOMEG00000021362) #22	L3HYPDH (ENSOMEG00000021423) #23	kcnh5a (ENSOMEG00000021461)	abcd4 (ENSOMEG00000021555)	ENSOMEG00000021630	vsx2 (ENSOMEG00000021724)	eif2b2 (ENSOMEG00000021791)	FILIP1 (ENSOMEG00000021826)	COX7A2 (ENSOMEG00000021844)	NT5E (ENSOMEG00000021931)	lrp11 (ENSOMEG00000021973)	pcmt (ENSOMEG00000021999)	nup43 (ENSOMEG00000022035)	lats1 (ENSOMEG00000022074)	rab10 (ENSOMEG00000022106)	KIF3C (ENSOMEG00000022156)
Oryzias_a	ANCESTRAL SPECIES	39	ENSGT00940000168150.b	ENSGT00940000156078.d	ENSGT00940000155724.r	ENSGT01000000221402	ENSGT00950000182902.a.d	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00530000063775.a.b	ENSGT00940000154550.a	ENSGT00950000182852.A.a.a.a	ENSGT00390000007686.b.c.a
Chinese medaka	MODERN SPECIES	62						ENSOSIG00000015725	ENSOSIG00000015729	ABHD1 (ENSOSIG00000015737)	SNX9 (ENSOSIG00000015842)	ctsbb (ENSOSIG00000016460)	fdft1 (ENSOSIG00000016463)	gata4 (ENSOSIG00000016464)	NCOA7 (ENSOSIG00000016507)	ENSOSIG00000017274	ppp1r13bb (ENSOSIG00000017278)	daam1b (ENSOSIG00000017319) #22	L3HYPDH (ENSOSIG00000017384) #23	kcnh5a (ENSOSIG00000017394)	SGPP1 (ENSOSIG00000017405)	ENSOSIG00000017452	vsx2 (ENSOSIG00000018505)	ENSOSIG00000018511	fosab (ENSOSIG00000018516)	tmed10 (ENSOSIG00000018519)	eif2b2 (ENSOSIG00000018531)	jdp2b (ENSOSIG00000018541)	NT5E (ENSOSIG00000018543)	COX7A2 (ENSOSIG00000018546)	FILIP1 (ENSOSIG00000018550)	WDR20 (ENSOSIG00000018554)	hsp90aa1.1 (ENSOSIG00000018570)
Japanese Medaka HdrR	MODERN SPECIES	16	IMPG1 (ENSORLG00000017297)	myo6a (ENSORLG00000017306)	ENSORLG00000017309	ENSORLG00000027607	ABHD1 (ENSORLG00000017314)	SNX9 (ENSORLG00000017321)	ENSORLG00000017323	ENSORLG00000017331	ENSORLG00000017340	ctsbb (ENSORLG00000017347)	fdft1 (ENSORLG00000017362)	gata4 (ENSORLG00000017374)	ENSORLG00000017384	ENSORLG00000027447	ppp1r13bb (ENSORLG00000017405)	daam1b (ENSORLG00000017437) #22	ENSORLG00000017447	ENSORLG00000027814	ENSORLG00000017450	abcd4 (ENSORLG00000017458)	ENSORLG00000017485	ENSORLG00000022205	eif2b2 (ENSORLG00000017494)	tmed10 (ENSORLG00000017499)	fosab (ENSORLG00000024739)	ENSORLG00000017504	jdp2b (ENSORLG00000017506)	NT5E (ENSORLG00000017511)	COX7A2 (ENSORLG00000017514)	FILIP1 (ENSORLG00000017517)	ENSORLG00000017520
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Ballan wrasse	MODERN SPECIES	281	prox1a (ENSLBEG00000012512)	ENSLBEG00000012476	rps6kc1 (ENSLBEG00000012402)	SNX9 (ENSLBEG00000012148)	ENSLBEG00000012058	kcnk2b (ENSLBEG00000012028)	ENSLBEG00000011980	ABHD1 (ENSLBEG00000011941)	ctsbb (ENSLBEG00000011916)	fdft1 (ENSLBEG00000011877)	gata4 (ENSLBEG00000011847)	NCOA7 (ENSLBEG00000011818)	ENSLBEG00000011798	ENSLBEG00000011756	ppp1r13bb (ENSLBEG00000011620)	daam1b (ENSLBEG00000011322) #22	L3HYPDH (ENSLBEG00000011185) #23	kcnh5a (ENSLBEG00000011125)	SGPP1 (ENSLBEG00000011100)	abcd4 (ENSLBEG00000011018)	ENSLBEG00000010926	vsx2 (ENSLBEG00000010732)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Perciformes	ANCESTRAL SPECIES	14	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.td	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Cottioidei	ANCESTRAL SPECIES	23	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Lumpfish	MODERN SPECIES	16	prox1a (ENSCLMG00005008036)	rps6kc1 (ENSCLMG00005008035)	ENSCLMG00005008032	SNX9 (ENSCLMG00005007434)	ENSCLMG00005007418	kcnk2b (ENSCLMG00005020436)	ABHD1 (ENSCLMG00005020431)	ctsbb (ENSCLMG00005020430)	fdft1 (ENSCLMG00005020429)	gata4 (ENSCLMG00005020428)	NCOA7 (ENSCLMG00005020409)	ENSCLMG00005020408	ENSCLMG00005020407	ppp1r13bb (ENSCLMG00005019938)	ENSCLMG00005019926	daam1b (ENSCLMG00005019800) #22	L3HYPDH (ENSCLMG00005019792) #23	KCNH5 (ENSCLMG00005019791)	SGPP1 (ENSCLMG00005019790)	abcd4 (ENSCLMG00005019603)	ENSCLMG00005019594	VSX2 (ENSCLMG00005019574)	eif2b2 (ENSCLMG00005019569)	tmed10 (ENSCLMG00005019567)	fosab (ENSCLMG00005019566)	ENSCLMG00005019544	JDP2 (ENSCLMG00005019541)	ENSCLMG00005019540	DLST (ENSCLMG00005019329)	ENSCLMG00005019321	YLPM1 (ENSCLMG00005019318)
Stickleback	MODERN SPECIES	18	smyd2b (ENSGACG00000010127)	prox1a (ENSGACG00000010140)	rps6kc1 (ENSGACG00000010144)	ENSGACG00000010160	SNX9 (ENSGACG00000010171)	ENSGACG00000010188	kcnk2b (ENSGACG00000010191)	ENSGACG00000010204	ABHD1 (ENSGACG00000010221)	ctsbb (ENSGACG00000010234)	fdft1 (ENSGACG00000010266)	gata4 (ENSGACG00000010274)	NCOA7 (ENSGACG00000010278)	ENSGACG00000010284	ppp1r13bb (ENSGACG00000010288)	daam1b (ENSGACG00000010299) #22	L3HYPDH (ENSGACG00000010318) #23	kcnh5a (ENSGACG00000010336)	SGPP1 (ENSGACG00000010351)	abcd4 (ENSGACG00000010354)	ENSGACG00000010367	eif2b2 (ENSGACG00000010441)	tmed10 (ENSGACG00000010450)	fosab (ENSGACG00000010476)	ENSGACG00000010481	jdp2b (ENSGACG00000010513)	ENSGACG00000010524	DLST (ENSGACG00000010529)	ENSGACG00000010545	YLPM1 (ENSGACG00000010546)	esrrb (ENSGACG00000010561)
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.td	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Pike perch	MODERN SPECIES	4	prox1a (ENSSLUG00000024753)	rps6kc1 (ENSSLUG00000024757)	ENSSLUG00000024761	SNX9 (ENSSLUG00000024777)	ENSSLUG00000024883	KCNK2 (ENSSLUG00000024884)	ENSSLUG00000024885	ABHD1 (ENSSLUG00000024886)	ctsbb (ENSSLUG00000024893)	fdft1 (ENSSLUG00000024901)	gata4 (ENSSLUG00000024907)	NCOA7 (ENSSLUG00000024913)	ENSSLUG00000024916	ENSSLUG00000024920	ppp1r13bb (ENSSLUG00000024949)	daam1b (ENSSLUG00000025047) #22	L3HYPDH (ENSSLUG00000025088) #23	ENSSLUG00000025091	SGPP1 (ENSSLUG00000025093)	abcd4 (ENSSLUG00000025106)	ENSSLUG00000025145	vsx2 (ENSSLUG00000025176)	eif2b2 (ENSSLUG00000025183)	tmed10 (ENSSLUG00000025188)	fosab (ENSSLUG00000025189)	ENSSLUG00000025193	JDP2 (ENSSLUG00000025202)	ENSSLUG00000025204	DLST (ENSSLUG00000025216)	ENSSLUG00000025235	ENSSLUG00000025239
Channel bull blenny	MODERN SPECIES	16	rps6kc1 (ENSCGOG00000009926)	ENSCGOG00000009971	SNX9 (ENSCGOG00000009988)	ENSCGOG00000010582	kcnk2b (ENSCGOG00000010602)	ENSCGOG00000010605	ABHD1 (ENSCGOG00000010606)	ctsbb (ENSCGOG00000010609)	fdft1 (ENSCGOG00000010611)	gata4 (ENSCGOG00000010645)	NCOA7 (ENSCGOG00000010652)	ENSCGOG00000010738	ENSCGOG00000010745	ppp1r13bb (ENSCGOG00000010751)	ENSCGOG00000010907	daam1b (ENSCGOG00000010945) #22	ENSCGOG00000011111	KCNH5 (ENSCGOG00000011116)	SGPP1 (ENSCGOG00000011124)	abcd4 (ENSCGOG00000011151)	ENSCGOG00000011773	vsx2 (ENSCGOG00000013018)	eif2b2 (ENSCGOG00000013036)	tmed10 (ENSCGOG00000013100)	fosab (ENSCGOG00000013115)	ENSCGOG00000013119	jdp2b (ENSCGOG00000013123)	DLST (ENSCGOG00000013131)	ENSCGOG00000013159	YLPM1 (ENSCGOG00000013163)	esrrb (ENSCGOG00000013178)
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00940000153433.A.e
European seabass	MODERN SPECIES	7	PTPN14 (ENSDLAG00005014848)	ENSDLAG00005014736	ENSDLAG00005014708	RPS6KC1 (ENSDLAG00005014671)	ENSDLAG00005014625	ENSDLAG00005013558	ENSDLAG00005028616	ENSDLAG00005013494	ENSDLAG00005013383	ctsbb (ENSDLAG00005013196)	ENSDLAG00005013169	gata4 (ENSDLAG00005013161)	ENSDLAG00005012798	ENSDLAG00005029515	ENSDLAG00005012214	ENSDLAG00005012000 #22	ENSDLAG00005011986 #23	ENSDLAG00005031391	ENSDLAG00005011850	ENSDLAG00005034267	ENSDLAG00005011058	ENSDLAG00005021841	ENSDLAG00005016948	eif2b2 (ENSDLAG00005032222)	tmed10 (ENSDLAG00005010986)	fosab (ENSDLAG00005010958)	ENSDLAG00005010932	ENSDLAG00005026347	ENSDLAG00005010885	ENSDLAG00005027128	ENSDLAG00005010630
Large yellow croaker	MODERN SPECIES	482	prox1a (ENSLCRG00005009483)	rps6kc1 (ENSLCRG00005009484)	ENSLCRG00005009495	SNX9 (ENSLCRG00005009496)	ENSLCRG00005009510	kcnk2b (ENSLCRG00005009511)	ENSLCRG00005009512	ABHD1 (ENSLCRG00005009513)	ctsbb (ENSLCRG00005009524)	fdft1 (ENSLCRG00005009578)	gata4 (ENSLCRG00005009583)	NCOA7 (ENSLCRG00005009596)	si:dkey-25e12.3 (ENSLCRG00005010447)	ENSLCRG00005010449	ppp1r13bb (ENSLCRG00005010456)	daam1b (ENSLCRG00005011689) #22	L3HYPDH (ENSLCRG00005011845) #23	kcnh5a (ENSLCRG00005011847)	SGPP1 (ENSLCRG00005011873)	abcd4 (ENSLCRG00005011891)	ENSLCRG00005012750	vsx2 (ENSLCRG00005013203)	eif2b2 (ENSLCRG00005013207)	tmed10 (ENSLCRG00005013219)	ENSLCRG00005013223	fosab (ENSLCRG00005013224)	ENSLCRG00005013225	jdp2b (ENSLCRG00005013226)	ENSLCRG00005013227	ENSLCRG00005013228	ENSLCRG00005013229
Gilthead seabream	MODERN SPECIES	14	prox1a (ENSSAUG00010023176)	rps6kc1 (ENSSAUG00010023181)	ENSSAUG00010023188	SNX9 (ENSSAUG00010023203)	ENSSAUG00010002790	kcnk2b (ENSSAUG00010002808)	ENSSAUG00010002831	ABHD1 (ENSSAUG00010002895)	ctsbb (ENSSAUG00010003083)	fdft1 (ENSSAUG00010003090)	gata4 (ENSSAUG00010003096)	NCOA7 (ENSSAUG00010003134)	ENSSAUG00010004528	ENSSAUG00010004531	ppp1r13bb (ENSSAUG00010004582)	daam1b (ENSSAUG00010006758) #22	L3HYPDH (ENSSAUG00010006928) #23	kcnh5a (ENSSAUG00010006956)	SGPP1 (ENSSAUG00010007715)	abcd4 (ENSSAUG00010007771)	ENSSAUG00010008793	vsx2 (ENSSAUG00010008905)	eif2b2 (ENSSAUG00010008912)	tmed10 (ENSSAUG00010008915)	fosab (ENSSAUG00010008920)	ENSSAUG00010008923	jdp2b (ENSSAUG00010008924)	ENSSAUG00010008926	DLST (ENSSAUG00010008933)	ENSSAUG00010009351	YLPM1 (ENSSAUG00010009355)
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000168254	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00940000154790.b.b	ENSGT00440000039837	ENSGT00940000153433.A.e
Fugu	MODERN SPECIES	7	prox1a (ENSTRUG00000013890)	rps6kc1 (ENSTRUG00000013791)	ENSTRUG00000031803	SNX9 (ENSTRUG00000013436)	ENSTRUG00000013428	kcnk2b (ENSTRUG00000013276)	ENSTRUG00000012659	ABHD1 (ENSTRUG00000012547)	ctsbb (ENSTRUG00000012315)	fdft1 (ENSTRUG00000012217)	gata4 (ENSTRUG00000012112)	NCOA7 (ENSTRUG00000012001)	ENSTRUG00000025277	ENSTRUG00000011980	ppp1r13bb (ENSTRUG00000011779)	daam1b (ENSTRUG00000011584) #22	ENSTRUG00000011415	SGPP1 (ENSTRUG00000011371)	abcd4 (ENSTRUG00000011285)	ENSTRUG00000011086	ENSTRUG00000026930	eif2b2 (ENSTRUG00000010849)	tmed10 (ENSTRUG00000010739)	fos (ENSTRUG00000010579)	ENSTRUG00000010431	jdp2b (ENSTRUG00000021670)	ENSTRUG00000010067	ENSTRUG00000028021	esrrb (ENSTRUG00000009721)	TGFB3 (ENSTRUG00000009598)	FLVCR2 (ENSTRUG00000019781)
Tetraodon	MODERN SPECIES	5	PTPN14 (ENSTNIG00000016380)	smyd2b (ENSTNIG00000016379)	prox1a (ENSTNIG00000016378)	rps6kc1 (ENSTNIG00000016377)	ENSTNIG00000016376	SNX9 (ENSTNIG00000016375)	ENSTNIG00000016374	kcnk2b (ENSTNIG00000016373)	ENSTNIG00000016372	ABHD1 (ENSTNIG00000016371)	fdft1 (ENSTNIG00000016370)	gata4 (ENSTNIG00000016369)	NCOA7 (ENSTNIG00000016368)	ENSTNIG00000016367	ppp1r13bb (ENSTNIG00000016366)	daam1b (ENSTNIG00000016365) #22	kcnh5a (ENSTNIG00000016364)	SGPP1 (ENSTNIG00000016363)	abcd4 (ENSTNIG00000016362)	ENSTNIG00000016361	ENSTNIG00000016360	eif2b2 (ENSTNIG00000016359)	tmed10 (ENSTNIG00000016358)	fosab (ENSTNIG00000016357)	ENSTNIG00000016356	jdp2b (ENSTNIG00000016355)	ENSTNIG00000016354	ENSTNIG00000016353	esrrb (ENSTNIG00000016352)	TGFB3 (ENSTNIG00000016351)	FLVCR2 (ENSTNIG00000016350)
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e
Climbing perch	MODERN SPECIES	15	ENSATEG00000009814	ENSATEG00000027949	ENSATEG00000009787	ENSATEG00000009730	ENSATEG00000009677	ENSATEG00000009586	ENSATEG00000009575	ctsbb (ENSATEG00000008504)	ENSATEG00000008409	gata4 (ENSATEG00000008328)	ENSATEG00000029505	ENSATEG00000008225	HINT3 (ENSATEG00000026864)	ENSATEG00000008155	ENSATEG00000027953	ENSATEG00000007294 #22	ENSATEG00000007263 #23	ENSATEG00000007202	ENSATEG00000007157	ENSATEG00000007206	ENSATEG00000007137	eif2b2 (ENSATEG00000007102)	tmed10 (ENSATEG00000027216)	fosab (ENSATEG00000006737)	ENSATEG00000006400	ENSATEG00000006378	ENSATEG00000025438	DLST (ENSATEG00000006339)	ENSATEG00000006311	YLPM1 (ENSATEG00000006214)	ENSATEG00000006182
Siamese fighting fish	MODERN SPECIES	13	rps6kc1 (ENSBSLG00000015461)	ENSBSLG00000015369	SNX9 (ENSBSLG00000013570)	ENSBSLG00000013407	kcnk2b (ENSBSLG00000013371)	ENSBSLG00000013217	ABHD1 (ENSBSLG00000013108)	ctsbb (ENSBSLG00000011798)	fdft1 (ENSBSLG00000011660)	gata4 (ENSBSLG00000011585)	NCOA7 (ENSBSLG00000010837)	ENSBSLG00000010745	ENSBSLG00000010642	ppp1r13bb (ENSBSLG00000009560)	ENSBSLG00000009534	daam1b (ENSBSLG00000009464) #22	L3HYPDH (ENSBSLG00000009452) #23	kcnh5a (ENSBSLG00000009363)	SGPP1 (ENSBSLG00000009354)	abcd4 (ENSBSLG00000008462)	vsx2 (ENSBSLG00000008381)	eif2b2 (ENSBSLG00000008254)	tmed10 (ENSBSLG00000008221)	fosab (ENSBSLG00000008210)	ENSBSLG00000008204	JDP2 (ENSBSLG00000008200)	ENSBSLG00000008123	DLST (ENSBSLG00000007996)	ENSBSLG00000007977	YLPM1 (ENSBSLG00000007846)	esrrb (ENSBSLG00000007771)
Zig-zag eel	MODERN SPECIES	16	RPS6KC1 (ENSMAMG00000020585)	ENSMAMG00000020581	ENSMAMG00000025814	ENSMAMG00000020556	ENSMAMG00000020549	ENSMAMG00000025008	ENSMAMG00000020534	ctsbb (ENSMAMG00000020531)	ENSMAMG00000020523	gata4 (ENSMAMG00000020506)	ENSMAMG00000020498	ENSMAMG00000020489	ENSMAMG00000020482	ENSMAMG00000020447	ENSMAMG00000018056	ENSMAMG00000017978 #22	ENSMAMG00000017966 #23	ENSMAMG00000017947	ENSMAMG00000017937	ENSMAMG00000017858	ENSMAMG00000017836	eif2b2 (ENSMAMG00000017801)	tmed10 (ENSMAMG00000017781)	fosab (ENSMAMG00000024747)	ENSMAMG00000017536	ENSMAMG00000026076	ENSMAMG00000017509	DLST (ENSMAMG00000027751)	ENSMAMG00000017474	YLPM1 (ENSMAMG00000017450)	ENSMAMG00000017424
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000155141.x	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Seriola	ANCESTRAL SPECIES	4	ENSGT00940000161092	ENSGT00940000154242.a.d	ENSGT00940000165962	ENSGT00390000004923.B	ENSGT00940000165540	ENSGT00940000165084	ENSGT00940000158687.a.a	ENSGT00950000183212.B	ENSGT00390000017252	ENSGT00550000075009	ENSGT00940000160284	ENSGT00390000013853	ENSGT00940000158299.a	ENSGT00940000157269.a.a	ENSGT00940000173326	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00940000154297.A.g.b	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837
Yellowtail amberjack	MODERN SPECIES	2579							znf513a (ENSSLDG00000013483)	snx17 (ENSSLDG00000013436)	atraid (ENSSLDG00000013407)	eif2b4 (ENSSLDG00000013386)	nme6 (ENSSLDG00000013345)	ENSSLDG00000013331	CHRNA2 (ENSSLDG00000013323)	ptk2bb (ENSSLDG00000013211)	ENSSLDG00000013181	daam1b (ENSSLDG00000013098) #22	L3HYPDH (ENSSLDG00000013034) #23	kcnh5a (ENSSLDG00000013002)	ENSSLDG00000012980	abcd4 (ENSSLDG00000012878)	ENSSLDG00000012826
Greater amberjack	MODERN SPECIES	10	sox7 (ENSSDUG00000013596)	ENSSDUG00000013598	ENSSDUG00000013616	ENSSDUG00000013728	FNDC4 (ENSSDUG00000014323)	ENSSDUG00000014334	znf513a (ENSSDUG00000014347)	snx17 (ENSSDUG00000014375)	atraid (ENSSDUG00000014431)	eif2b4 (ENSSDUG00000014451)	nme6 (ENSSDUG00000014494)	ENSSDUG00000014521	CHRNA2 (ENSSDUG00000014529)	ptk2bb (ENSSDUG00000014546)	ENSSDUG00000014582	daam1b (ENSSDUG00000014610) #22	L3HYPDH (ENSSDUG00000014690) #23	kcnh5a (ENSSDUG00000014701)	SGPP1 (ENSSDUG00000014727)	abcd4 (ENSSDUG00000014738)	ENSSDUG00000014824	vsx2 (ENSSDUG00000014864)	eif2b2 (ENSSDUG00000014892)	tmed10 (ENSSDUG00000014920)	fosab (ENSSDUG00000014939)	fosab (ENSSDUG00000015050)	ENSSDUG00000015080	jdp2b (ENSSDUG00000015263)	ENSSDUG00000015277	DLST (ENSSDUG00000015306)	ENSSDUG00000015329
Barramundi perch	MODERN SPECIES	162	rps6kc1 (ENSLCAG00010009227)	ENSLCAG00010009222	SNX9 (ENSLCAG00010008944)	ENSLCAG00010008845	kcnk2b (ENSLCAG00010008840)	ENSLCAG00010008833	ABHD1 (ENSLCAG00010008827)	ctsbb (ENSLCAG00010008813)	fdft1 (ENSLCAG00010008793)	ENSLCAG00010008788	gata4 (ENSLCAG00010008778)	NCOA7 (ENSLCAG00010008775)	si:dkey-25e12.3 (ENSLCAG00010008769)	ENSLCAG00010008765	ppp1r13bb (ENSLCAG00010008755)	daam1b (ENSLCAG00010008688) #22	L3HYPDH (ENSLCAG00010008674) #23	KCNH5 (ENSLCAG00010008671)	SGPP1 (ENSLCAG00010008665)	abcd4 (ENSLCAG00010008552)	ENSLCAG00010008524	vsx2 (ENSLCAG00010008520)	eif2b2 (ENSLCAG00010008491)	tmed10 (ENSLCAG00010008470)	fosab (ENSLCAG00010008466)	ENSLCAG00010008465	jdp2b (ENSLCAG00010008462)	ENSLCAG00010008454	DLST (ENSLCAG00010008407)	ENSLCAG00010008381	YLPM1 (ENSLCAG00010008365)
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00940000155656	ENSGT00530000063085.A.a	ENSGT00940000156557.h	ENSGT00940000164041.b.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00950000182902.a.d	ENSGT00940000166128	ENSGT00390000016034	ENSGT00940000158349	ENSGT00940000175851	ENSGT00940000155141.w.a	ENSGT00510000047616.a.b	ENSGT00510000047616.a.a	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a #22	ENSGT00940000156540.b	ENSGT00940000158836.a.b	ENSGT00950000182955.a.a.b	ENSGT00940000165253	ENSGT00940000157776.c.a	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000164930.b	ENSGT00940000155693.a.a	ENSGT00930000151014.r	ENSGT00940000154790.b.a.a	ENSGT00440000039837	ENSGT00940000153433.A.e	ENSGT00940000155747.g.b
Turbot	MODERN SPECIES	12	ENSSMAG00000033798	ENSSMAG00000012264	YLPM1 (ENSSMAG00000012182)	ENSSMAG00000012176	DLST (ENSSMAG00000012118)	ENSSMAG00000012103	ENSSMAG00000012096	fosab (ENSSMAG00000012082)	tmed10 (ENSSMAG00000022433)	eif2b2 (ENSSMAG00000012038)	ENSSMAG00000012357	ENSSMAG00000012400	ENSSMAG00000012436	ENSSMAG00000012504	ENSSMAG00000012524	ENSSMAG00000012563 #22	ENSSMAG00000012682	ENSSMAG00000012751	ENSSMAG00000012765	ENSSMAG00000012775	gata4 (ENSSMAG00000012793)	ENSSMAG00000012802	ctsbb (ENSSMAG00000012842)	ENSSMAG00000012908	ENSSMAG00000012915	ENSSMAG00000012945	ENSSMAG00000012973	ENSSMAG00000013039	RPS6KC1 (ENSSMAG00000013161)	ENSSMAG00000013176	ENSSMAG00000013183
Tongue sole	MODERN SPECIES	17	prox1a (ENSCSEG00000020639)	rps6kc1 (ENSCSEG00000020571)	ENSCSEG00000020566	SNX9 (ENSCSEG00000020557)	ENSCSEG00000020554	kcnk2b (ENSCSEG00000020551)	ENSCSEG00000020550	ABHD1 (ENSCSEG00000020549)	ctsbb (ENSCSEG00000020545)	fdft1 (ENSCSEG00000020538)	gata4 (ENSCSEG00000020533)	ENSCSEG00000020531	ENSCSEG00000020528	si:dkey-25e12.3 (ENSCSEG00000020525)	ppp1r13bb (ENSCSEG00000020508)	daam1b (ENSCSEG00000020438) #22	kcnh5a (ENSCSEG00000020428)	SGPP1 (ENSCSEG00000020422)	batf (ENSCSEG00000020408)	FLVCR2 (ENSCSEG00000020397)	TGFB3 (ENSCSEG00000020391)	esrrb (ENSCSEG00000020387)	YLPM1 (ENSCSEG00000020366)	ENSCSEG00000020361	DLST (ENSCSEG00000019781)	jdp2b (ENSCSEG00000019774)	ENSCSEG00000019751	fosab (ENSCSEG00000019716)	tmed10 (ENSCSEG00000019711)	eif2b2 (ENSCSEG00000019706)	fez2b (ENSCSEG00000019701)
Tiger tail seahorse	MODERN SPECIES	340	ptk2bb (ENSHCOG00000007778)	ENSHCOG00000007787	zc3h14 (ENSHCOG00000007792)	batf (ENSHCOG00000007809)	FLVCR2 (ENSHCOG00000000262)	esrrb (ENSHCOG00000007835)	ENSHCOG00000007850	ENSHCOG00000007858	ENSHCOG00000007864	jdp2b (ENSHCOG00000007868)	ENSHCOG00000007878	fosab (ENSHCOG00000007886)	tmed10 (ENSHCOG00000007895)	eif2b2 (ENSHCOG00000007914)	ppp1r13bb (ENSHCOG00000007945)	daam1b (ENSHCOG00000008052) #22	L3HYPDH (ENSHCOG00000008061) #23	kcnh5a (ENSHCOG00000008109)	SGPP1 (ENSHCOG00000008121)	abcd4 (ENSHCOG00000008159)	ENSHCOG00000008207	vsx2 (ENSHCOG00000008242)	ENSHCOG00000008251	psmb6 (ENSHCOG00000008258)	spint1b (ENSHCOG00000008268)	ENSHCOG00000008285	CEP170B (ENSHCOG00000008298)	ENSHCOG00000008311	ckbb (ENSHCOG00000008329)	cdc42bpb (ENSHCOG00000008423)	vipas39 (ENSHCOG00000008444)
Protacanthopterygii	ANCESTRAL SPECIES	167																ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000155293.a.b	ENSGT00940000156540.b	ENSGT00940000154832.db.a #31	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000154045.b	ENSGT00940000164854.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b
Salmoninae	ANCESTRAL SPECIES	4	ENSGT00940000159576	ENSGT00940000162208.`c.b	ENSGT00950000182919.A.p.d.a	ENSGT00940000155625.ib	ENSGT00940000164536.a.a	ENSGT00390000000509.c	ENSGT00950000183068.b.c.b.d	ENSGT00390000000155.b.a.j	ENSGT00940000166084.A.a.b.b.a.b.a.b.b.b.b	ENSGT00940000157191.d.e	ENSGT01050000244838.D.a.b.d	ENSGT00950000182982.C.c.b.i	ENSGT00390000000358.z.a	ENSGT01030000234912.c	ENSGT00940000155141.w.a.g	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000155293.a.b	ENSGT00940000156540.b	ENSGT00940000154832.db.a #31	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000154045.b.d.b	ENSGT00940000164854.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b
Salmoninae_a	ANCESTRAL SPECIES	23	ENSGT00390000006493.q	ENSGT00390000018686.f	ENSGT00950000182919.A.p.d.b	ENSGT00940000155625.hb	ENSGT00940000164536.a.a	ENSGT00390000000509.c	ENSGT00950000183068.b.c.b.d	ENSGT00390000000155.b.a.j	ENSGT00940000166084.A.a.b.b.a.b.a.b.b.b.b	ENSGT00940000157191.d.e	ENSGT01050000244838.D.a.b.d	ENSGT00950000182982.C.c.b.i	ENSGT00390000000358.z.a	ENSGT01030000234912.c	ENSGT00940000155141.w.a.g	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000155293.a.b	ENSGT00940000156540.b	ENSGT00940000154832.db.a #31	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000154045.b.d.b	ENSGT00940000164854.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00390000006493.q	ENSGT00390000018686.f	ENSGT00950000182919.A.p.d.b	ENSGT00940000155625.hb	ENSGT00940000164536.a.a	ENSGT00390000000509.c	ENSGT00950000183068.b.c.b.d	ENSGT00390000000155.b.a.j	ENSGT00940000166084.A.a.b.b.a.b.a.b.b.b.b	ENSGT00940000157191.d.e	ENSGT01050000244838.D.a.b.d	ENSGT00950000182982.C.c.b.i	ENSGT00390000000358.z.a	ENSGT01030000234912.c	ENSGT00940000155141.w.a.g	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000155293.a.b	ENSGT00940000156540.b	ENSGT00940000154832.db.a #31	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000154656.ob.b.jb	ENSGT00940000156116.B	ENSGT00940000154045.b.d.b	ENSGT00940000164854.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b
Rainbow trout	MODERN SPECIES	29	ccnc (ENSOMYG00000020818)	ENSOMYG00000020882	pgm3 (ENSOMYG00000020940)	ENSOMYG00000021065	ENSOMYG00000009507	ENSOMYG00000009528	tent5ab (ENSOMYG00000009561)	ENSOMYG00000062807	ENSOMYG00000069665	elovl4b (ENSOMYG00000009576)	ENSOMYG00000009587	rnf146 (ENSOMYG00000009593)	ENSOMYG00000009607	ENSOMYG00000060150	ENSOMYG00000009827	ENSOMYG00000010433 #22	ENSOMYG00000010727 #23	ENSOMYG00000010734	ENSOMYG00000010751	ENSOMYG00000010770 #31	ENSOMYG00000010780	ENSOMYG00000010801	ENSOMYG00000010809	ENSOMYG00000010935	ENSOMYG00000011187	esr2a (ENSOMYG00000011232)	ENSOMYG00000017424	ENSOMYG00000048362	ENSOMYG00000011459	ENSOMYG00000064915	ENSOMYG00000013924
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00390000006493.q	ENSGT00390000018686.f	ENSGT00950000182919.A.p.d.b	ENSGT00940000155625.hb	ENSGT00940000164536.a.a	ENSGT00390000000509.c	ENSGT00950000183068.b.c.b.d	ENSGT00390000000155.b.a.j	ENSGT00940000166084.A.a.b.b.a.b.a.b.b.b.b	ENSGT00940000157191.d.e	ENSGT01050000244838.D.a.b.d	ENSGT00950000182982.C.c.b.i	ENSGT00390000000358.z.a	ENSGT01030000234912.c	ENSGT00940000155141.w.a.g	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000155293.a.b	ENSGT00940000156540.b	ENSGT00940000154832.db.a #31	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000154656.ob.b.jb	ENSGT00940000156116.B	ENSGT00940000154045.b.d.b	ENSGT00940000164854.b	ENSGT01060000249188.C.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a
Coho salmon	MODERN SPECIES	3	ENSOKIG00005032193	ENSOKIG00005032207	FAXC (ENSOKIG00005032250)	ccnc (ENSOKIG00005032263)	ngs (ENSOKIG00005032328)	pgm3 (ENSOKIG00005032389)	ENSOKIG00005032780	PRSS35 (ENSOKIG00005032810)	ENSOKIG00005032818	tent5ab (ENSOKIG00005032826)	elovl4b (ENSOKIG00005032845)	SOGA3 (ENSOKIG00005032857)	rnf146 (ENSOKIG00005032893)	ENSOKIG00005032902	NCOA7 (ENSOKIG00005002028)	daam1b (ENSOKIG00005002313) #22	L3HYPDH (ENSOKIG00005002900) #23	ENSOKIG00005002912	kcnh5a (ENSOKIG00005002928)	ppm1ab (ENSOKIG00005002953) #31	ENSOKIG00005002963	SGPP1 (ENSOKIG00005002983)	atp5mj (ENSOKIG00005002992)	ppp1r13bb (ENSOKIG00005003082)	ENSOKIG00005003272	esr2a (ENSOKIG00005003323)	NUDT14 (ENSOKIG00005003451)	ENSOKIG00005003588	ENSOKIG00005003905	brf1b (ENSOKIG00005003915)	btbd6b (ENSOKIG00005003931)
Chinook salmon	MODERN SPECIES	29	vegfab (ENSOTSG00005028785)	mrps18a (ENSOTSG00005028786)	rsph9 (ENSOTSG00005028787)	FAXC (ENSOTSG00005028789)	ccnc (ENSOTSG00005028790)	ngs (ENSOTSG00005028791)	pgm3 (ENSOTSG00005028792)	ENSOTSG00005028795	PRSS35 (ENSOTSG00005028796)	ENSOTSG00005028799	tent5ab (ENSOTSG00005028801)	SOGA3 (ENSOTSG00005028802)	rnf146 (ENSOTSG00005028804)	ENSOTSG00005028805	ENSOTSG00005028807	daam1b (ENSOTSG00005028810) #22	L3HYPDH (ENSOTSG00005029057) #23	ENSOTSG00005029058	kcnh5a (ENSOTSG00005029061)	ENSOTSG00005029065	ENSOTSG00005029066	ppp1r13bb (ENSOTSG00005029086)	ENSOTSG00005000405	ENSOTSG00005000410	esr2a (ENSOTSG00005000418)	nudt14 (ENSOTSG00005000425)	jag2b (ENSOTSG00005000443)	ENSOTSG00005000617	ENSOTSG00005000620	brf1b (ENSOTSG00005000623)	btbd6b (ENSOTSG00005000629)
Salmo	ANCESTRAL SPECIES	26	ENSGT00390000006493.q	ENSGT00390000018686.f	ENSGT00950000182919.A.p.d.b	ENSGT00940000155625.hb	ENSGT00940000164536.a.a.e	ENSGT00390000000509.c	ENSGT00950000183068.b.c.b.d	ENSGT00390000000155.b.a.j	ENSGT00940000166084.A.a.b.b.a.b.a.b.b.b.b	ENSGT00940000157191.d.e	ENSGT01050000244838.D.a.b.d	ENSGT00950000182982.C.c.b.i	ENSGT00390000000358.z.a	ENSGT01030000234912.c	ENSGT00940000155141.w.a.g	ENSGT00940000156452.a.a #22	ENSGT00390000002032 #23	ENSGT00940000155293.a.b	ENSGT00940000156540.b	ENSGT00940000154832.db.a #31	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000154045.b.d.b	ENSGT00940000164854.b	ENSGT00950000182952.A.b.d.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000091665	ENSSSAG00000089509	ccnc (ENSSSAG00000101349)	ENSSSAG00000054419	pgm3 (ENSSSAG00000054445)	ENSSSAG00000054591	ENSSSAG00000054605	ENSSSAG00000082073	ENSSSAG00000104153	tent5ab (ENSSSAG00000096833)	elovl4b (ENSSSAG00000101417)	ENSSSAG00000054629	rnf146 (ENSSSAG00000097788)	ENSSSAG00000054644	ENSSSAG00000054665	ENSSSAG00000054782 #22	l3hypdh (ENSSSAG00000056589) #23	ENSSSAG00000056595	ENSSSAG00000056603	ENSSSAG00000099972 #31	ENSSSAG00000106076	ENSSSAG00000056632	ENSSSAG00000117777	ENSSSAG00000105896	ENSSSAG00000056834	ENSSSAG00000095374	ENSSSAG00000064438	esr2a (ENSSSAG00000064457)	ENSSSAG00000111831	ENSSSAG00000064498	ENSSSAG00000064561
River trout	MODERN SPECIES	28	FAXC (ENSSTUG00000032357)	ccnc (ENSSTUG00000032267)	ngs (ENSSTUG00000032256)	pgm3 (ENSSTUG00000032088)	ENSSTUG00000032059	PRSS35 (ENSSTUG00000032052)	ENSSTUG00000032046	ENSSTUG00000032039	tent5ab (ENSSTUG00000032026)	elovl4b (ENSSTUG00000032014)	ENSSTUG00000031992	SOGA3 (ENSSTUG00000031975)	rnf146 (ENSSTUG00000031972)	ENSSTUG00000031958	NCOA7 (ENSSTUG00000031055)	daam1b (ENSSTUG00000030979) #22	L3HYPDH (ENSSTUG00000030971) #23	ENSSTUG00000030968	kcnh5a (ENSSTUG00000030961)	ppm1ab (ENSSTUG00000030957) #31	ENSSTUG00000030945	ENSSTUG00000030936	atp5mj (ENSSTUG00000030934)	ppp1r13bb (ENSSTUG00000029560)	ENSSTUG00000029516	ENSSTUG00000029496	esr2a (ENSSTUG00000029385)	ENSSTUG00000029371	nudt14 (ENSSTUG00000029361)	jag2b (ENSSTUG00000028616)	btg3 (ENSSTUG00000028568)
Huchen	MODERN SPECIES	946									ENSHHUG00000008986	tent5ab (ENSHHUG00000008991)	elovl4b (ENSHHUG00000008993)	ENSHHUG00000009009	rnf146 (ENSHHUG00000009010)	ENSHHUG00000009019	NCOA7 (ENSHHUG00000009040)	daam1b (ENSHHUG00000009116) #22	L3HYPDH (ENSHHUG00000009138) #23	ENSHHUG00000009148	kcnh5a (ENSHHUG00000009157)	ppm1ab (ENSHHUG00000009204) #31	ENSHHUG00000009233	ENSHHUG00000009256	atp5mj (ENSHHUG00000009268)	ENSHHUG00000009275	ENSHHUG00000009282
Northern pike	MODERN SPECIES	17	rsph9 (ENSELUG00000005279)	tmem63a (ENSELUG00000005379)	POU3F2 (ENSELUG00000005415)	FAXC (ENSELUG00000005429)	ccnc (ENSELUG00000005452)	ngs (ENSELUG00000005514)	pgm3 (ENSELUG00000005550)	ENSELUG00000005594	PRSS35 (ENSELUG00000005604)	tent5ab (ENSELUG00000005625)	elovl4b (ENSELUG00000005650)	SOGA3 (ENSELUG00000005668)	rnf146 (ENSELUG00000005677)	CUG2 (ENSELUG00000026123)	ENSELUG00000005724	daam1b (ENSELUG00000005906) #22	L3HYPDH (ENSELUG00000005970) #23	ENSELUG00000000191	kcnh5a (ENSELUG00000006048)	ENSELUG00000006072 #31	ENSELUG00000006090	SGPP1 (ENSELUG00000006101)	68MP (ENSELUG00000034362)	ppp1r13bb (ENSELUG00000006197)	ENSELUG00000006255	esr2a (ENSELUG00000006276)	nudt14 (ENSELUG00000024951)	jag2b (ENSELUG00000006466)	brf1b (ENSELUG00000006533)	btbd6b (ENSELUG00000006498)	ENSELUG00000006581
Osteoglossocephalai	ANCESTRAL SPECIES	329														ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00390000017718	ENSGT00950000182767.b.a.a	ENSGT00390000013814	ENSGT00730000111160
Clupeocephala	ANCESTRAL SPECIES	305								ENSGT00390000015369	ENSGT00940000166933	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b	ENSGT01010000222987	ENSGT00940000154383.b	ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00390000017718	ENSGT00950000182767.b.a.a	ENSGT00940000169554	ENSGT00390000013814	ENSGT00730000111160
Otomorpha	ANCESTRAL SPECIES	284									ENSGT00940000166933	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b	ENSGT01010000222987	ENSGT00940000154383.b	ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00730000111160	ENSGT00390000013814	ENSGT00950000182767.b.a.b.a	ENSGT00940000169554	ENSGT00950000182767.b.a.a	ENSGT00390000017718	ENSGT00390000016736.a.i	ENSGT00940000155583	ENSGT00390000002201	ENSGT00550000074807.d.a.b	ENSGT00940000163080.b
Otophysi	ANCESTRAL SPECIES	21	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00940000177331	ENSGT00390000005163	ENSGT00940000166933	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b	ENSGT01010000222987	ENSGT00940000154383.b	ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00730000111160	ENSGT00390000013814	ENSGT00940000169554	ENSGT00950000182767.b.a.a	ENSGT00390000017718	ENSGT00390000016736.a.i	ENSGT00940000155583	ENSGT00390000002201	ENSGT00550000074807.d.a.b	ENSGT00940000163080.b	ENSGT00940000162391
Characiphysae	ANCESTRAL SPECIES	59	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00940000155076.a.c	ENSGT00940000158683.a.a.a.b	ENSGT00940000177331	ENSGT00390000005163	ENSGT00940000166933	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b	ENSGT01010000222987	ENSGT00940000154383.b	ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00730000111160	ENSGT00390000013814	ENSGT00940000169554	ENSGT00950000182767.b.a.a	ENSGT00390000017718	ENSGT00390000016736.a.i	ENSGT00940000155583	ENSGT00390000002201	ENSGT00550000074807.d.a.b	ENSGT00940000163080.b	ENSGT00940000162391
Channel catfish	MODERN SPECIES	28	ENSIPUG00000011000	ENSIPUG00000011075	ENSIPUG00000011090	ENSIPUG00000011117	ENSIPUG00000011145	ENSIPUG00000011150	ENSIPUG00000011160	ENSIPUG00000011170	ENSIPUG00000011186	ENSIPUG00000011194	ENSIPUG00000011206	ENSIPUG00000011226	ptp4a2a (ENSIPUG00000011240)	ppp1r13ba (ENSIPUG00000011282)	sdsl (ENSIPUG00000011383)	DAAM1 (ENSIPUG00000011453) #22	gpr135 (ENSIPUG00000011650)	jkamp (ENSIPUG00000011656) #24	ENSIPUG00000011680	LRFN5 (ENSIPUG00000011711)	ENSIPUG00000011730	ANKEF1 (ENSIPUG00000011763)	khk (ENSIPUG00000011822)	emilin1 (ENSIPUG00000011880)	ENSIPUG00000011917	gpn1 (ENSIPUG00000011938)	stmn4l (ENSIPUG00000011959)	il17a/f1 (ENSIPUG00000012002)	ENSIPUG00000012017	lrrc57 (ENSIPUG00000012051)	brms1la (ENSIPUG00000012080)
Characiphysae_b	ANCESTRAL SPECIES	44	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00940000155076.a.c	ENSGT00940000158683.a.a.a.b	ENSGT00940000177331	ENSGT00390000005163	ENSGT00940000166933	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b	ENSGT01010000222987	ENSGT00940000154383.b	ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00730000111160	ENSGT00390000013814	ENSGT00940000169554	ENSGT00950000182767.b.a.a	ENSGT00390000017718	ENSGT00390000016736.a.i	ENSGT00940000155583	ENSGT00390000002201	ENSGT00550000074807.d.a.b	ENSGT00940000163080.b	ENSGT00940000162391
Characoidei	ANCESTRAL SPECIES	64	ENSGT00390000002030	ENSGT00390000007753.b	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00940000177331	ENSGT00390000005163	ENSGT00940000166933	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b	ENSGT01010000222987	ENSGT00940000154383.b	ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296
Mexicana tetra	MODERN SPECIES	24	ENSAMXG00000033005	ENSAMXG00000042401	ENSAMXG00000031585	ENSAMXG00000031235	ENSAMXG00000043240	rtraf (ENSAMXG00000043321)	ENSAMXG00000030098	ENSAMXG00000030097	gjb9a (ENSAMXG00000043873)	ENSAMXG00000038657	ptp4a2a (ENSAMXG00000010746)	ENSAMXG00000041044	ppp1r13ba (ENSAMXG00000041345)	ENSAMXG00000033581	sdsl (ENSAMXG00000042192)	DAAM1 (ENSAMXG00000035129) #22	GPR135 (ENSAMXG00000025719)	jkamp (ENSAMXG00000042443) #24	ENSAMXG00000019390	ENSAMXG00000043335	ENSAMXG00000035202	ENSAMXG00000033311	ENSAMXG00000039694	ENSAMXG00000034813	LRFN5 (ENSAMXG00000044055)	ENSAMXG00000042599
Red-bellied piranha	MODERN SPECIES	352											megf6 (ENSPNAG00000004489)	MECOM (ENSPNAG00000004449)	NYAP2 (ENSPNAG00000004400)	IRS1 (ENSPNAG00000004388)	rhbdd1 (ENSPNAG00000028604)	DAAM1 (ENSPNAG00000004380) #22	GPR135 (ENSPNAG00000006925)	jkamp (ENSPNAG00000028404) #24	ENSPNAG00000028382
Electric eel	MODERN SPECIES	38	gnpnat1 (ENSEEEG00000012638)	socs4 (ENSEEEG00000012640)	ENSEEEG00000012642	gch1 (ENSEEEG00000012647)	SAMD4A (ENSEEEG00000012648)	ero1a (ENSEEEG00000012650)	gpr137c (ENSEEEG00000012796)	TXNDC16 (ENSEEEG00000012798)	ptger2a (ENSEEEG00000012800)	NID2 (ENSEEEG00000012808)	rtraf (ENSEEEG00000012809)	gjb9a (ENSEEEG00000012813)	ptp4a2a (ENSEEEG00000012814)	ppp1r13ba (ENSEEEG00000012827)	sdsl (ENSEEEG00000013126)	DAAM1 (ENSEEEG00000013144) #22	GPR135 (ENSEEEG00000013197)	jkamp (ENSEEEG00000013199) #24	ENSEEEG00000013202	LRFN5 (ENSEEEG00000013204)	pnn (ENSEEEG00000013205)	gemin2 (ENSEEEG00000013206)	ENSEEEG00000013220	ENSEEEG00000013225	FBXO33 (ENSEEEG00000013230)	fam177a1 (ENSEEEG00000013232)	ppp2r3c (ENSEEEG00000013235)	PRORP (ENSEEEG00000013257)	psma6a (ENSEEEG00000013266)	nfkbiab (ENSEEEG00000013274)	INSM2 (ENSEEEG00000013313)
Cyprinoidei	ANCESTRAL SPECIES	24	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00940000177331	ENSGT00390000005163	ENSGT00940000166933	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b	ENSGT00940000154383.b	ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00730000111160	ENSGT00390000013814	ENSGT00950000182767.b.a.a	ENSGT00390000017718	ENSGT00390000016736.a.i	ENSGT00940000155583	ENSGT00390000002201	ENSGT00550000074807.d.a.b	ENSGT00940000163080.b	ENSGT00940000162391	ENSGT00950000183139.B.o.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000156452.a.b.a #22
Goldfish	MODERN SPECIES	2488																ENSCARG00000062516 #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000156452.a.b.a #22
Golden-line barbel	MODERN SPECIES	53	ero1a (ENSSGRG00000030915)	gpr137c (ENSSGRG00000030913)	TXNDC16 (ENSSGRG00000030912)	ptger2a (ENSSGRG00000030911)	ENSSGRG00000030910	ENSSGRG00000030909	ENSSGRG00000030908	ENSSGRG00000030907	NID2 (ENSSGRG00000030905)	rtraf (ENSSGRG00000030883)	ENSSGRG00000030880	gjb9a (ENSSGRG00000030878)	ptp4a2a (ENSSGRG00000030874)	ppp1r13ba (ENSSGRG00000030873)	sdsl (ENSSGRG00000030872)	DAAM1 (ENSSGRG00000030580) #22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	482																ENSGT00940000156452.a.b.b.a #22	ENSGT00950000182998.A.a	ENSGT00390000018097.f #24	ENSGT00940000167646	ENSGT00940000158296.g	ENSGT00730000111160.ab	ENSGT00390000013814.p	ENSGT00950000182767.b.a.a.d	ENSGT00390000017718.k	ENSGT00390000016736.a.i.f	ENSGT00940000155583.e	ENSGT00390000002201.a	ENSGT00550000074807.d.a.b.b	ENSGT00940000163080.b.a	ENSGT00940000162391.h	ENSGT00950000183139.B.o.b.a
Cyprininae_a	ANCESTRAL SPECIES	108																ENSGT00940000156452.a.b.b.a #22	ENSGT00950000182998.A.a	ENSGT00390000018097.f #24	ENSGT00940000158296.g	ENSGT00730000111160.ab	ENSGT00390000013814.p	ENSGT00950000182767.b.a.a.d	ENSGT00390000017718.k	ENSGT00390000016736.a.i.f	ENSGT00940000155583.e	ENSGT00390000002201.a	ENSGT00550000074807.d.a.b.b	ENSGT00940000163080.b.a	ENSGT00940000162391.h	ENSGT00950000183139.B.o.b.a	ENSGT00940000164711.b.a.a.b
Common carp reference	MODERN SPECIES	30	SAMD4A (ENSCCRG00000048720)	ero1a (ENSCCRG00000052708)	gpr137c (ENSCCRG00000067457)	TXNDC16 (ENSCCRG00000003585)	ptger2a (ENSCCRG00000007345)	NID2 (ENSCCRG00000025445)	ENSCCRG00000003571	ENSCCRG00000056575	ENSCCRG00000003572	ENSCCRG00000029859	rtraf (ENSCCRG00000003563)	ENSCCRG00000003555	gjb9a (ENSCCRG00000081454)	ptp4a2a (ENSCCRG00000070328)	ppp1r13ba (ENSCCRG00000003365)	ENSCCRG00000024081 #22	ENSCCRG00000064633	ENSCCRG00000052984	ENSCCRG00000065996	ENSCCRG00000027982	pnn (ENSCCRG00000062426)	gemin2 (ENSCCRG00000041294)	ENSCCRG00000043064	ENSCCRG00000063684	fam177a1 (ENSCCRG00000081145)	ENSCCRG00000038588	RALGAPA1 (ENSCCRG00000048497)	INSM2 (ENSCCRG00000058693)	brms1la (ENSCCRG00000080869)	lrrc57 (ENSCCRG00000052981)	ENSCCRG00000014198
Goldfish	MODERN SPECIES	772											ENSCARG00000039789	ENSCARG00000039779	ENSCARG00000039763	ppp1r13ba (ENSCARG00000036508)	sdsl (ENSCARG00000036437)	DAAM1 (ENSCARG00000035132) #22	GPR135 (ENSCARG00000031225)	jkamp (ENSCARG00000031197) #24	ENSCARG00000031183	LRFN5 (ENSCARG00000031178)	ENSCARG00000031160
Cyprininae	ANCESTRAL SPECIES	214	ENSGT00940000177331.a.b.a	ENSGT00940000157901.s.b	ENSGT00390000005163.g.a	ENSGT00940000166933.c.b	ENSGT00390000007753.b.g	ENSGT00940000153986.a.a	ENSGT01050000244902.b.c.a.a.d	ENSGT00940000157901.s.a	ENSGT00390000005163.g.b	ENSGT00940000166933.d	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b.b	ENSGT00940000154383.b.a	ENSGT00940000153463.a.c.a.d	ENSGT00940000160713	ENSGT00940000156452.a.b.b.b #22	ENSGT00950000182998.A.b	ENSGT00390000018097.e #24	ENSGT00940000158296.h	ENSGT00730000111160.bb	ENSGT00390000013814.o	ENSGT00950000182767.b.a.a.c	ENSGT00390000017718.l	ENSGT00390000016736.a.i.e	ENSGT00940000155583.f	ENSGT00390000002201.b	ENSGT00550000074807.d.a.b.a	ENSGT00940000163080.b.b	ENSGT00940000162391.g	ENSGT00950000183139.B.o.a.a	ENSGT00940000164711.b.a.a.a
Goldfish	MODERN SPECIES	36	FBXO33 (ENSCARG00000018310)	ENSCARG00000018247	gemin2 (ENSCARG00000018174)	pnn (ENSCARG00000018163)	LRFN5 (ENSCARG00000018161)	ENSCARG00000017992	ENSCARG00000017922	GCH1 (ENSCARG00000067875)	ENSCARG00000067860	socs4 (ENSCARG00000067856)	gnpnat1 (ENSCARG00000067845)	ptger2a (ENSCARG00000067837)	NID2 (ENSCARG00000067644)	rtraf (ENSCARG00000067602)	ENSCARG00000067595	DAAM1 (ENSCARG00000065505) #22	GPR135 (ENSCARG00000065371)	jkamp (ENSCARG00000065361) #24	ENSCARG00000065354	lgals3b (ENSCARG00000065341)	fbxo34 (ENSCARG00000065335)	atg14 (ENSCARG00000065316)	ENSCARG00000065301	ero1a (ENSCARG00000064921)	gpr137c (ENSCARG00000064890)	ptp4a2a (ENSCARG00000064765)	gjb9a (ENSCARG00000064755)	ENSCARG00000064750	ENSCARG00000064696	rtraf (ENSCARG00000064677)	NID2 (ENSCARG00000064408)
Cyprininae_a	ANCESTRAL SPECIES	24	ENSGT00390000002030.s	ENSGT00390000013481.c.a.e	ENSGT00940000157933.a	ENSGT00390000007753.b.h	ENSGT00940000153986.a.b	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a.c	ENSGT00940000177331.a.b.a	ENSGT00940000157901.s.b	ENSGT00390000005163.g.a	ENSGT00940000166933.c.b	ENSGT01030000234513.A.a.a.a.b.d.b.b	ENSGT00940000154383.b.a	ENSGT00940000153463.a.c.a.d	ENSGT00940000160713	ENSGT00940000156452.a.b.b.b #22	ENSGT00950000182998.A.b	ENSGT00390000018097.e #24	ENSGT00940000158296.h	ENSGT00730000111160.bb	ENSGT00390000013814.o	ENSGT00950000182767.b.a.a.c	ENSGT00390000017718.l	ENSGT00390000016736.a.i.e	ENSGT00940000155583.f	ENSGT00390000002201.b	ENSGT00550000074807.d.a.b.a	ENSGT00940000163080.b.b	ENSGT00940000162391.g	ENSGT00950000183139.B.o.a.a	ENSGT00940000164711.b.a.a.a
Common carp reference	MODERN SPECIES	4	socs4 (ENSCCRG00000004183)	wdhd1 (ENSCCRG00000075583)	gch1 (ENSCCRG00000080529)	SAMD4A (ENSCCRG00000076406)	ero1a (ENSCCRG00000003606)	gpr137c (ENSCCRG00000060829)	ENSCCRG00000067518	ptger2a (ENSCCRG00000025440)	NID2 (ENSCCRG00000021161)	rtraf (ENSCCRG00000080546)	ENSCCRG00000021169	gjb9a (ENSCCRG00000060688)	ptp4a2a (ENSCCRG00000064890)	ppp1r13ba (ENSCCRG00000021197)	sdsl (ENSCCRG00000023893)	ENSCCRG00000040785 #22	jkamp (ENSCCRG00000065708) #24	ENSCCRG00000053200	pnn (ENSCCRG00000072866)	gemin2 (ENSCCRG00000049220)	ENSCCRG00000041257	ENSCCRG00000057055	fam177a1 (ENSCCRG00000037991)	ppp2r3c (ENSCCRG00000038005)	PRORP (ENSCCRG00000004163)	nfkbiab (ENSCCRG00000039028)	INSM2 (ENSCCRG00000039035)	RALGAPA1 (ENSCCRG00000004287)	brms1la (ENSCCRG00000014144)	lrrc57 (ENSCCRG00000014153)	il17a/f2 (ENSCCRG00000014161)
Golden-line barbel	MODERN SPECIES	970	wdhd1 (ENSSGRG00000036518)	gch1 (ENSSGRG00000036914)	SAMD4A (ENSSGRG00000036920)	ero1a (ENSSGRG00000036988)	gpr137c (ENSSGRG00000037785)	ptger2a (ENSSGRG00000037788)	ENSSGRG00000037789	ENSSGRG00000037792	ENSSGRG00000037793	rtraf (ENSSGRG00000037801)	ENSSGRG00000037993	gjb9a (ENSSGRG00000037995)	ptp4a2a (ENSSGRG00000038001)	ppp1r13ba (ENSSGRG00000038043)	sdsl (ENSSGRG00000038052)	DAAM1 (ENSSGRG00000038099) #22	GPR135 (ENSSGRG00000038680)	jkamp (ENSSGRG00000038682) #24
Zebrafish	MODERN SPECIES	8	ENSDARG00000113158	SAMD4A (ENSDARG00000075759)	ero1a (ENSDARG00000015228)	gpr137c (ENSDARG00000045289)	TXNDC16 (ENSDARG00000032256)	ptger2a (ENSDARG00000011434)	NID2 (ENSDARG00000075707)	rtraf (ENSDARG00000009253)	ENSDARG00000057681	ENSDARG00000101501	gjb9a (ENSDARG00000003925)	ENSDARG00000111008	ptp4a2a (ENSDARG00000087443)	ppp1r13ba (ENSDARG00000004377)	sdsl (ENSDARG00000074698)	DAAM1 (ENSDARG00000015059) #22	GPR135 (ENSDARG00000028586)	jkamp (ENSDARG00000028581) #24	ENSDARG00000089320	LRFN5 (ENSDARG00000071230)	pnn (ENSDARG00000015851)	gemin2 (ENSDARG00000015638)	ENSDARG00000099973	FBXO33 (ENSDARG00000075400)	fam177a1 (ENSDARG00000079636)	ppp2r3c (ENSDARG00000043972)	PRORP (ENSDARG00000075057)	psma6a (ENSDARG00000019398)	nfkbiab (ENSDARG00000007693)	INSM2 (ENSDARG00000020655)	RALGAPA1 (ENSDARG00000076889)
Clupeiformes	ANCESTRAL SPECIES	25									ENSGT00390000015369	ENSGT00940000166933	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b	ENSGT00940000154383.b	ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000158296	ENSGT00730000111160	ENSGT00390000013814	ENSGT00950000182767.b.a.b.a	ENSGT00950000182767.b.a.a	ENSGT00390000017718	ENSGT00390000016736.a.i	ENSGT00940000155583	ENSGT00390000002201	ENSGT00550000074807.d.b	ENSGT00940000163080.b	ENSGT00940000162391	ENSGT00950000183139.B.p
Atlantic herring	MODERN SPECIES	5	wdr32 (ENSCHAG00000012418)	CPXM1 (ENSCHAG00000011638)	ENSCHAG00000011607	manba (ENSCHAG00000011342)	ENSCHAG00000011331	ENSCHAG00000011310	ENSCHAG00000011293	DCTN1 (ENSCHAG00000009951)	adprs (ENSCHAG00000009891)	ENSCHAG00000009872	ENSCHAG00000009864	gjb9a (ENSCHAG00000009826)	ptp4a2a (ENSCHAG00000009811)	ppp1r13ba (ENSCHAG00000006186)	sdsl (ENSCHAG00000006069)	DAAM1 (ENSCHAG00000005975) #22	GPR135 (ENSCHAG00000005954)	jkamp (ENSCHAG00000005874) #24	LRFN5 (ENSCHAG00000005852)	ENSCHAG00000005846	pnn (ENSCHAG00000005723)	gemin2 (ENSCHAG00000005697)	ENSCHAG00000005442	FBXO33 (ENSCHAG00000005414)	fam177a1 (ENSCHAG00000005317)	ppp2r3c (ENSCHAG00000005187)	PRORP (ENSCHAG00000005147)	psma6b (ENSCHAG00000005047)	nfkbiab (ENSCHAG00000005020)	INSM2 (ENSCHAG00000004941)	RALGAPA1 (ENSCHAG00000002656)
Euteleosteomorpha	ANCESTRAL SPECIES	255								ENSGT00390000015369	ENSGT00940000166933	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b	ENSGT01010000222987	ENSGT00940000154383.b	ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00390000017718	ENSGT00950000182767.b.a.a	ENSGT00950000182767.b.a.b.a	ENSGT00390000013814	ENSGT00730000111160
Protacanthopterygii	ANCESTRAL SPECIES	22	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00940000163836.b	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000002751	ENSGT00390000015784	ENSGT00390000015369	ENSGT00940000166933	ENSGT01030000234921	ENSGT01030000234513.A.a.a.a.b.d.b	ENSGT00940000154383.b	ENSGT00940000153463.a.c.a	ENSGT00940000160713	ENSGT00940000156452.a.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000167646	ENSGT00940000158296	ENSGT00730000111160	ENSGT00390000013814	ENSGT00950000182767.b.a.b.a	ENSGT00950000182767.b.a.a	ENSGT00390000017718	ENSGT00390000016736.a.i	ENSGT00940000155583	ENSGT00390000002201	ENSGT00550000074807.d.a.a.b	ENSGT00940000163080.b	ENSGT00940000162391
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	125	ENSGT00940000161549.a.a	ENSGT00940000158601.h	ENSGT00940000163836.b.d	ENSGT00940000155654.w	ENSGT00390000018116.c	ENSGT00940000157283.e	ENSGT00390000002751.i	ENSGT00390000015784.p	ENSGT00970000198157	ENSGT00940000166933.a	ENSGT01030000234921.a	ENSGT01030000234513.A.a.a.a.b.d.b.f	ENSGT00940000154383.b.d	ENSGT00940000153463.a.c.a.e	ENSGT00940000160713	ENSGT00940000156452.a.b.c #22	ENSGT00390000018097.b #24	ENSGT00940000158296.i
Salmoninae_a	ANCESTRAL SPECIES	8	ENSGT00940000161549.a.a	ENSGT00940000158601.h	ENSGT00940000163836.b.d	ENSGT00940000155654.w	ENSGT00390000018116.c	ENSGT00940000157283.e	ENSGT00390000002751.i	ENSGT01000000220557	ENSGT00970000198157	ENSGT00940000166933.a	ENSGT01030000234921.a	ENSGT01030000234513.A.a.a.a.b.d.b.f	ENSGT00940000154383.b.d	ENSGT00940000153463.a.c.a.e	ENSGT00940000160713	ENSGT00940000156452.a.b.c #22	ENSGT00390000018097.b #24	ENSGT00940000158296.i	ENSGT00730000111160.cb	ENSGT00390000013814.l	ENSGT00950000182767.b.a.a.f	ENSGT00390000017718.j	ENSGT00390000016736.a.i.c	ENSGT00390000002201.c	ENSGT00550000074807.d.b	ENSGT00940000163080.b.d	ENSGT00940000162391.c.a	ENSGT00950000183139.B.p.a	ENSGT00940000164711.b.a.a.d	ENSGT00940000158474.g	ENSGT00950000182980.a.b.a.b.a.a.f.b.b
Salmo	ANCESTRAL SPECIES	8	ENSGT00940000167604	ENSGT00940000161549.a.a	ENSGT00940000158601.h	ENSGT00940000163836.b.d	ENSGT00940000155654.w	ENSGT00390000018116.c	ENSGT00940000157283.e	ENSGT00390000002751.i	ENSGT01000000220557	ENSGT00940000166933.a	ENSGT01030000234921.a	ENSGT01030000234513.A.a.a.a.b.d.b.f	ENSGT00940000154383.b.d	ENSGT00940000153463.a.c.a.e	ENSGT00940000160713	ENSGT00940000156452.a.b.c #22	ENSGT00390000018097.b #24	ENSGT00940000158296.i	ENSGT00730000111160.cb	ENSGT00390000013814.l	ENSGT00950000182767.b.a.a.f	ENSGT00390000017718.j	ENSGT00390000016736.a.i.c	ENSGT00390000002201.c	ENSGT00550000074807.d.b	ENSGT00940000163080.b.d	ENSGT00940000162391.c.a	ENSGT00950000183139.B.p.a	ENSGT00940000164711.b.a.a.d	ENSGT00940000158474.g	ENSGT00950000182980.a.b.a.b.a.a.f.b.b
Atlantic salmon	MODERN SPECIES		scfd1 (ENSSSAG00000071642)	g2e3 (ENSSSAG00000071501)	PRKD1 (ENSSSAG00000066101)	ENSSSAG00000116615	ENSSSAG00000065930	ehd4 (ENSSSAG00000108761)	rcor1 (ENSSSAG00000112622)	ankrd9 (ENSSSAG00000083291)	tecpr2 (ENSSSAG00000065872)	ENSSSAG00000065864	ENSSSAG00000065866	ENSSSAG00000065859	gjb9a (ENSSSAG00000103454)	ptp4a2a (ENSSSAG00000102587)	ppp1r13ba (ENSSSAG00000065785)	ENSSSAG00000099373 #22	jkamp (ENSSSAG00000064146) #24	ENSSSAG00000108718	LRFN5 (ENSSSAG00000064144)	pnn (ENSSSAG00000097864)	gemin2 (ENSSSAG00000064105)	ENSSSAG00000064093	ENSSSAG00000089895	fam177a1 (ENSSSAG00000119733)	kiaa0391 (ENSSSAG00000063995)	nfkbiab (ENSSSAG00000063988)	INSM2 (ENSSSAG00000117096)	ralgapa1 (ENSSSAG00000009786)	brms1la (ENSSSAG00000009012)	ENSSSAG00000006332	ENSSSAG00000116888
River trout	MODERN SPECIES	26	ENSSTUG00000024321	ENSSTUG00000024324	SPTBN5 (ENSSTUG00000024338)	ehd4 (ENSSTUG00000024369)	traf3 (ENSSTUG00000024386)	rcor1 (ENSSTUG00000024431)	ankrd9 (ENSSTUG00000024472)	tecpr2 (ENSSTUG00000024493)	ENSSTUG00000024531	cinp (ENSSTUG00000024541)	ENSSTUG00000024561	ENSSTUG00000024588	ptp4a2a (ENSSTUG00000024611)	ppp1r13ba (ENSSTUG00000024637)	sdsl (ENSSTUG00000025065)	DAAM1 (ENSSTUG00000025112) #22	jkamp (ENSSTUG00000025369) #24	LRFN5 (ENSSTUG00000025413)	ENSSTUG00000025418	ENSSTUG00000025432	pnn (ENSSTUG00000025435)	gemin2 (ENSSTUG00000025445)	ENSSTUG00000025496	FBXO33 (ENSSTUG00000025548)	fam177a1 (ENSSTUG00000025554)	PRORP (ENSSTUG00000025597)	ENSSTUG00000025636	nfkbiab (ENSSTUG00000025662)	INSM2 (ENSSTUG00000025675)	RALGAPA1 (ENSSTUG00000025741)	brms1la (ENSSTUG00000026788)
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00940000161549.a.a	ENSGT00940000158601.h	ENSGT00940000163836.b.d	ENSGT00940000155654.w	ENSGT00390000018116.c	ENSGT00940000157283.e	ENSGT00390000002751.i	ENSGT01000000220557	ENSGT00970000198157	ENSGT00940000166933.a	ENSGT01030000234921.a	ENSGT01030000234513.A.a.a.a.b.d.b.f	ENSGT00940000154383.b.d	ENSGT00940000153463.a.c.a.e	ENSGT00940000160713	ENSGT00940000156452.a.b.c #22	ENSGT00390000018097.b #24	ENSGT00940000158296.i	ENSGT00730000111160.cb	ENSGT00390000013814.l	ENSGT00950000182767.b.a.a.f	ENSGT00390000017718.j	ENSGT00390000016736.a.i.c	ENSGT00390000002201.c	ENSGT00550000074807.d.b	ENSGT00940000163080.b.d	ENSGT00940000162391.c.a.b	ENSGT00950000183139.B.p.a	ENSGT00940000158474.g	ENSGT00950000182980.a.b.a.b.a.a.f.b.b	ENSGT00940000171001
Rainbow trout	MODERN SPECIES	10	ehd4 (ENSOMYG00000038344)	traf3 (ENSOMYG00000038356)	rcor1 (ENSOMYG00000038409)	ankrd9 (ENSOMYG00000038432)	tecpr2 (ENSOMYG00000038473)	ENSOMYG00000069940	ENSOMYG00000038497	ENSOMYG00000038529	ENSOMYG00000038566	ENSOMYG00000038607	ENSOMYG00000038654	gjb9a (ENSOMYG00000038659)	ptp4a2a (ENSOMYG00000038666)	ppp1r13ba (ENSOMYG00000038761)	sdsl (ENSOMYG00000038875)	ENSOMYG00000039006 #22	jkamp (ENSOMYG00000039232) #24	ENSOMYG00000039253	ENSOMYG00000075552	ENSOMYG00000063347	pnn (ENSOMYG00000039267)	gemin2 (ENSOMYG00000039307)	ENSOMYG00000039413	ENSOMYG00000039476	fam177a1 (ENSOMYG00000039486)	PRORP (ENSOMYG00000039492)	ENSOMYG00000049551	ENSOMYG00000039553	nfkbiab (ENSOMYG00000039584)	ENSOMYG00000076840	INSM2 (ENSOMYG00000039590)
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00940000161549.a.a	ENSGT00940000158601.h	ENSGT00940000163836.b.d	ENSGT00940000155654.w	ENSGT00390000018116.c	ENSGT00940000157283.e	ENSGT00390000002751.i	ENSGT01000000220557	ENSGT00390000015369.f.b	ENSGT00940000166933.a	ENSGT01030000234921.a	ENSGT01030000234513.A.a.a.a.b.d.b.f	ENSGT00940000154383.b.d	ENSGT00940000153463.a.c.a.e	ENSGT00940000160713	ENSGT00940000156452.a.b.c #22	ENSGT00390000018097.b #24	ENSGT00940000158296.i	ENSGT00730000111160.cb	ENSGT00390000013814.l	ENSGT00950000182767.b.a.a.f	ENSGT00390000017718.j	ENSGT00390000016736.a.i.c	ENSGT00390000002201.c	ENSGT00550000074807.d.b	ENSGT00940000163080.b.d	ENSGT00940000162391.c.a.b	ENSGT00950000183139.B.p.a	ENSGT00940000158474.g	ENSGT00950000182980.a.b.a.b.a.a.f.b.b	ENSGT00940000171001
Coho salmon	MODERN SPECIES	27	ENSOKIG00005015169	SPTBN5 (ENSOKIG00005015182)	ehd4 (ENSOKIG00005015357)	traf3 (ENSOKIG00005015369)	rcor1 (ENSOKIG00005015403)	ankrd9 (ENSOKIG00005015430)	tecpr2 (ENSOKIG00005015437)	ENSOKIG00005015478	ENSOKIG00005015487	ADPRS (ENSOKIG00005015514)	ENSOKIG00005015530	ENSOKIG00005015542	ptp4a2a (ENSOKIG00005015544)	ppp1r13ba (ENSOKIG00005015586)	sdsl (ENSOKIG00005015817)	DAAM1 (ENSOKIG00005015857) #22	jkamp (ENSOKIG00005016058) #24	ENSOKIG00005016104	ENSOKIG00005016108	LRFN5 (ENSOKIG00005016116)	ENSOKIG00005016117	pnn (ENSOKIG00005016126)	gemin2 (ENSOKIG00005016143)	ENSOKIG00005016177	ENSOKIG00005016196	fam177a1 (ENSOKIG00005016201)	PRORP (ENSOKIG00005016212)	ENSOKIG00005016224	nfkbiab (ENSOKIG00005016240)	INSM2 (ENSOKIG00005016248)	RALGAPA1 (ENSOKIG00005016321)
Chinook salmon	MODERN SPECIES	2895	ehd4 (ENSOTSG00005046411)	traf3 (ENSOTSG00005046408)	rcor1 (ENSOTSG00005046406)	ankrd9 (ENSOTSG00005046405)	tecpr2 (ENSOTSG00005046403)	ENSOTSG00005046401	ENSOTSG00005046400	adprs (ENSOTSG00005046399)	ENSOTSG00005046395	ENSOTSG00005046393	gjb9a (ENSOTSG00005046391)	ptp4a2a (ENSOTSG00005046389)	ENSOTSG00005046388	ppp1r13ba (ENSOTSG00005046386)	sdsl (ENSOTSG00005046384)	DAAM1 (ENSOTSG00005046274) #22	jkamp (ENSOTSG00005046271) #24	LRFN5 (ENSOTSG00005046270)	ENSOTSG00005046269	pnn (ENSOTSG00005046268)	gemin2 (ENSOTSG00005046267)	ENSOTSG00005046265	FBXO33 (ENSOTSG00005046263)	fam177a1 (ENSOTSG00005046261)	PRORP (ENSOTSG00005046259)	ENSOTSG00005046257	nfkbiab (ENSOTSG00005046256)	INSM2 (ENSOTSG00005046255)	RALGAPA1 (ENSOTSG00005033600)	ttc7b (ENSOTSG00005029963)	ENSOTSG00005029935
Huchen	MODERN SPECIES	511			ehd4 (ENSHHUG00000019758)	traf3 (ENSHHUG00000019740)	rcor1 (ENSHHUG00000019728)	ankrd9 (ENSHHUG00000019726)	tecpr2 (ENSHHUG00000019674)	ENSHHUG00000019669	cinp (ENSHHUG00000019659)	ENSHHUG00000019651	ENSHHUG00000019630	ENSHHUG00000019628	ptp4a2a (ENSHHUG00000019614)	ppp1r13ba (ENSHHUG00000019561)	sdsl (ENSHHUG00000019548)	DAAM1 (ENSHHUG00000019472) #22	jkamp (ENSHHUG00000019457) #24	KLF6 (ENSHHUG00000019446)	pitrm1 (ENSHHUG00000019254)	PFKP (ENSHHUG00000018999)	ENSHHUG00000018995	ENSHHUG00000018993	wdr37 (ENSHHUG00000018941)	gtpbp4 (ENSHHUG00000018847)	LARP4B (ENSHHUG00000018820)
Salmoninae	ANCESTRAL SPECIES	232	ENSGT00950000183024.a.b.a.j	ENSGT00940000160678.a	ENSGT00940000158601.g	ENSGT00940000163836.b.c	ENSGT00940000155654.x	ENSGT00390000018116.d	ENSGT00940000157283.f	ENSGT00390000002751.j	ENSGT00390000015784.o	ENSGT00390000015369.f.a	ENSGT00940000166933.b	ENSGT01030000234921.b	ENSGT01030000234513.A.a.a.a.b.d.b.e	ENSGT00940000154383.b.c	ENSGT00940000153463.a.c.a.f	ENSGT00940000156452.a.b.d #22	ENSGT00950000182998.A	ENSGT00390000018097.a #24	ENSGT00940000167646	ENSGT00940000158296.j	ENSGT00730000111160.db	ENSGT00390000013814.k	ENSGT00950000182767.b.a.b.a	ENSGT00950000182767.b.a.a.e	ENSGT00390000017718.i	ENSGT00390000016736.a.i.d	ENSGT00940000155583	ENSGT00390000002201.d	ENSGT00390000002201.c	ENSGT00550000074807.d.b	ENSGT00940000163080.b.d
Salmoninae_a	ANCESTRAL SPECIES	42	ENSGT00950000183024.a.b.a.j	ENSGT00940000160678.a.mc	ENSGT00940000158601.g	ENSGT00940000163836.b.c	ENSGT00940000155654.x	ENSGT00390000018116.d	ENSGT00940000157283.f	ENSGT00390000002751.j	ENSGT00390000015784.o	ENSGT00390000015369.f.a	ENSGT00940000166933.b	ENSGT01030000234921.b	ENSGT01030000234513.A.a.a.a.b.d.b.e	ENSGT00940000154383.b.c	ENSGT00940000153463.a.c.a.f	ENSGT00940000156452.a.b.d #22	ENSGT00950000182998.A	ENSGT00390000018097.a #24	ENSGT00940000167646	ENSGT00940000158296.j	ENSGT00730000111160.db	ENSGT00390000013814.k	ENSGT00950000182767.b.a.b.a	ENSGT00950000182767.b.a.a.e	ENSGT00390000017718.i	ENSGT00390000016736.a.i.d	ENSGT00940000155583	ENSGT00390000002201.d	ENSGT00550000074807.d.a.a.b	ENSGT00940000163080.b.c	ENSGT00940000162391.c.b
Salmo	ANCESTRAL SPECIES	11	ENSGT00950000182865.b.a.a.b	ENSGT00950000183024.a.b.a.j	ENSGT00940000160678.a.mc	ENSGT00940000158601.g	ENSGT00940000163836.b.c	ENSGT00940000155654.x	ENSGT00390000018116.d	ENSGT00940000157283.f	ENSGT00390000002751.j	ENSGT00390000015784.o	ENSGT00390000015369.f.a	ENSGT00940000166933.b	ENSGT01030000234513.A.a.a.a.b.d.b.e	ENSGT00940000154383.b.c	ENSGT00940000153463.a.c.a.f	ENSGT00940000156452.a.b.d #22	ENSGT00950000182998.A	ENSGT00390000018097.a #24	ENSGT00940000158296.j	ENSGT00730000111160.db	ENSGT00390000013814.k	ENSGT00950000182767.b.a.b.a	ENSGT00950000182767.b.a.a.e	ENSGT00390000017718.i	ENSGT00390000016736.a.i.d	ENSGT00940000155583	ENSGT00390000002201.d	ENSGT00550000074807.d.a.a.b	ENSGT00940000163080.b.c	ENSGT00940000162391.c.b	ENSGT00950000183139.B.p.b
Atlantic salmon	MODERN SPECIES	28	scfd1 (ENSSSAG00000064292)	ENSSSAG00000064280	PRKD1 (ENSSSAG00000062230)	ENSSSAG00000095362	EHD4 (ENSSSAG00000061846)	traf3 (ENSSSAG00000098239)	rcor1 (ENSSSAG00000061641)	ankrd9 (ENSSSAG00000098525)	tecpr2 (ENSSSAG00000061252)	ENSSSAG00000061220	ENSSSAG00000061178	ENSSSAG00000061094	TP4A2 (ENSSSAG00000061024)	gjb9a (ENSSSAG00000061045)	ppp1r13ba (ENSSSAG00000060251)	DAAM1 (ENSSSAG00000087745) #22	ENSSSAG00000104130	jkamp (ENSSSAG00000050164) #24	LRFN5 (ENSSSAG00000050145)	ENSSSAG00000094043	pnn (ENSSSAG00000050088)	ENSSSAG00000102820	gemin2 (ENSSSAG00000050057)	ENSSSAG00000049967	ENSSSAG00000049942	fam177a1 (ENSSSAG00000113959)	ppp2r3c (ENSSSAG00000049873)	PSMA6 (ENSSSAG00000049820)	IKBA (ENSSSAG00000049805)	INSM2 (ENSSSAG00000049795)	RALGAPA1 (ENSSSAG00000003445)
River trout	MODERN SPECIES	17	foxg1a (ENSSTUG00000008963)	ehd4 (ENSSTUG00000008965)	traf3 (ENSSTUG00000008970)	rcor1 (ENSSTUG00000008996)	ankrd9 (ENSSTUG00000009091)	tecpr2 (ENSSTUG00000009101)	ENSSTUG00000009287	cinp (ENSSTUG00000009290)	adprs (ENSSTUG00000009304)	ENSSTUG00000009323	ENSSTUG00000009362	gjb9a (ENSSTUG00000009367)	ptp4a2a (ENSSTUG00000009380)	ppp1r13ba (ENSSTUG00000009403)	ENSSTUG00000009556	DAAM1 (ENSSTUG00000009594) #22	GPR135 (ENSSTUG00000009740)	jkamp (ENSSTUG00000009745) #24	ENSSTUG00000009820	LRFN5 (ENSSTUG00000009823)	pnn (ENSSTUG00000009832)	gemin2 (ENSSTUG00000009849)	ENSSTUG00000009895	FBXO33 (ENSSTUG00000010073)	fam177a1 (ENSSTUG00000010082)	ppp2r3c (ENSSTUG00000010089)	PRORP (ENSSTUG00000010162)	PSMA6 (ENSSTUG00000010190)	nfkbiab (ENSSTUG00000010218)	INSM2 (ENSSTUG00000010228)	RALGAPA1 (ENSSTUG00000010317)
Oncorhynchus	ANCESTRAL SPECIES	35	ENSGT00950000183024.a.b.a.j	ENSGT00940000160678.a.mc	ENSGT00940000158601.g	ENSGT00940000163836.b.c	ENSGT00940000155654.x	ENSGT00390000018116.d	ENSGT00940000157283.f	ENSGT00390000002751.j	ENSGT00390000015784.o	ENSGT00390000015369.f.a	ENSGT00940000166933.b	ENSGT01030000234921.b	ENSGT01030000234513.A.a.a.a.b.d.b.e	ENSGT00940000154383.b.c	ENSGT00940000153463.a.c.a.f	ENSGT00940000156452.a.b.d #22	ENSGT00950000182998.A	ENSGT00390000018097.a #24	ENSGT00940000167646	ENSGT00940000158296.j	ENSGT00730000111160.db	ENSGT00390000013814.k	ENSGT00950000182767.b.a.a.e	ENSGT00390000017718.i	ENSGT00390000016736.a.i.d	ENSGT00940000155583	ENSGT00390000002201.d	ENSGT00550000074807.d.a.a.b	ENSGT00940000163080.b.c	ENSGT00940000162391.c.b	ENSGT00950000183139.B.p.b
Rainbow trout	MODERN SPECIES	17	ehd4 (ENSOMYG00000016759)	traf3 (ENSOMYG00000016665)	rcor1 (ENSOMYG00000016642)	ankrd9 (ENSOMYG00000016639)	tecpr2 (ENSOMYG00000016480)	ENSOMYG00000016463	ENSOMYG00000016441	adprs (ENSOMYG00000016426)	ENSOMYG00000016381	ENSOMYG00000016372	gjb9a (ENSOMYG00000016366)	ptp4a2a (ENSOMYG00000016357)	ppp1r13ba (ENSOMYG00000016065)	ENSOMYG00000063532	ENSOMYG00000063622	DAAM1 (ENSOMYG00000015953) #22	ENSOMYG00000015935	jkamp (ENSOMYG00000015897) #24	ENSOMYG00000015878	ENSOMYG00000015864	ENSOMYG00000070153	ENSOMYG00000039363	ENSOMYG00000036650	ENSOMYG00000062862	ENSOMYG00000051409	pnn (ENSOMYG00000015809)	gemin2 (ENSOMYG00000063200)	ENSOMYG00000015770	ENSOMYG00000047333	fam177a1 (ENSOMYG00000047331)	ppp2r3c (ENSOMYG00000047318)
Oncorhynchus_a	ANCESTRAL SPECIES	50	ENSGT00950000182865.b.a.a.b	ENSGT00950000183024.a.b.a.j	ENSGT00940000160678.a.mc	ENSGT00940000158601.g	ENSGT00940000163836.b.c	ENSGT00940000155654.x	ENSGT00390000018116.d	ENSGT00940000157283.f	ENSGT00390000002751.j	ENSGT00390000015784.o	ENSGT00390000015369.f.a	ENSGT00940000166933.b	ENSGT01030000234513.A.a.a.a.b.d.b.e	ENSGT00940000154383.b.c	ENSGT00940000153463.a.c.a.f	ENSGT00940000156452.a.b.d #22	ENSGT00950000182998.A	ENSGT00390000018097.a #24	ENSGT00940000158296.j	ENSGT00730000111160.db	ENSGT00390000013814.k	ENSGT00950000182767.b.a.a.e	ENSGT00390000017718.i	ENSGT00390000016736.a.i.d	ENSGT00940000155583	ENSGT00390000002201.d	ENSGT00550000074807.d.a.a.b	ENSGT00940000163080.b.c	ENSGT00940000162391.c.b	ENSGT00950000183139.B.p.b	ENSGT00940000164711.b.a.a.c
Chinook salmon	MODERN SPECIES	32	g2e3 (ENSOTSG00005010384)	PRKD1 (ENSOTSG00005009868)	foxg1a (ENSOTSG00005009863)	ehd4 (ENSOTSG00005009861)	traf3 (ENSOTSG00005009856)	rcor1 (ENSOTSG00005009854)	ankrd9 (ENSOTSG00005009851)	tecpr2 (ENSOTSG00005009824)	ENSOTSG00005009823	cinp (ENSOTSG00005009822)	adprs (ENSOTSG00005009821)	ENSOTSG00005009805	gjb9a (ENSOTSG00005009804)	ptp4a2a (ENSOTSG00005009803)	ppp1r13ba (ENSOTSG00005009789)	DAAM1 (ENSOTSG00005009788) #22	GPR135 (ENSOTSG00005009787)	jkamp (ENSOTSG00005009776) #24	LRFN5 (ENSOTSG00005009775)	pnn (ENSOTSG00005009767)	gemin2 (ENSOTSG00005009611)	ENSOTSG00005009428	FBXO33 (ENSOTSG00005009425)	fam177a1 (ENSOTSG00005009424)	ppp2r3c (ENSOTSG00005009304)	PSMA6 (ENSOTSG00005009303)	nfkbiab (ENSOTSG00005009302)	RALGAPA1 (ENSOTSG00005009218)	brms1la (ENSOTSG00005009211)	ttc7b (ENSOTSG00005005751)	ENSOTSG00005005673
Coho salmon	MODERN SPECIES	5	g2e3 (ENSOKIG00005017163)	PRKD1 (ENSOKIG00005017209)	foxg1a (ENSOKIG00005017459)	ehd4 (ENSOKIG00005017477)	traf3 (ENSOKIG00005017502)	rcor1 (ENSOKIG00005017567)	ankrd9 (ENSOKIG00005017627)	tecpr2 (ENSOKIG00005017637)	ENSOKIG00005017666	cinp (ENSOKIG00005017705)	adprs (ENSOKIG00005017679)	ENSOKIG00005017716	gjb9a (ENSOKIG00005017744)	ptp4a2a (ENSOKIG00005017772)	ppp1r13ba (ENSOKIG00005017786)	DAAM1 (ENSOKIG00005017891) #22	GPR135 (ENSOKIG00005017995)	jkamp (ENSOKIG00005018004) #24	ENSOKIG00005018059	LRFN5 (ENSOKIG00005018073)	pnn (ENSOKIG00005018092)	ENSOKIG00005018177	FBXO33 (ENSOKIG00005018251)	fam177a1 (ENSOKIG00005018259)	ppp2r3c (ENSOKIG00005018268)	PRORP (ENSOKIG00005018377)	PSMA6 (ENSOKIG00005018423)	nfkbiab (ENSOKIG00005018457)	INSM2 (ENSOKIG00005018473)	RALGAPA1 (ENSOKIG00005018677)	brms1la (ENSOKIG00005021443)
Huchen	MODERN SPECIES	219	PRKD1 (ENSHHUG00000028102)	foxg1a (ENSHHUG00000028099)	ehd4 (ENSHHUG00000028086)	traf3 (ENSHHUG00000028079)	rcor1 (ENSHHUG00000028042)	ankrd9 (ENSHHUG00000028038)	tecpr2 (ENSHHUG00000028010)	ENSHHUG00000028002	cinp (ENSHHUG00000027989)	adprs (ENSHHUG00000027965)	ENSHHUG00000027941	ENSHHUG00000027939	gjb9a (ENSHHUG00000027935)	ptp4a2a (ENSHHUG00000027913)	ppp1r13ba (ENSHHUG00000027845)	DAAM1 (ENSHHUG00000027825) #22	GPR135 (ENSHHUG00000027817)	jkamp (ENSHHUG00000027811) #24
Northern pike	MODERN SPECIES	14	foxg1a (ENSELUG00000004275)	ENSELUG00000004283	ENSELUG00000004347	ehd4 (ENSELUG00000004390)	traf3 (ENSELUG00000004411)	rcor1 (ENSELUG00000004430)	ankrd9 (ENSELUG00000004434)	tecpr2 (ENSELUG00000004453)	ENSELUG00000004470	cinp (ENSELUG00000034143)	adprs (ENSELUG00000004479)	ENSELUG00000004533	ptp4a2a (ENSELUG00000004582)	ppp1r13ba (ENSELUG00000004656)	sdsl (ENSELUG00000004730)	DAAM1 (ENSELUG00000004862) #22	GPR135 (ENSELUG00000004738)	jkamp (ENSELUG00000004921) #24	ENSELUG00000004960	ENSELUG00000013619	ENSELUG00000005017	LRFN5 (ENSELUG00000005030)	pnn (ENSELUG00000005070)	gemin2 (ENSELUG00000005266)	ENSELUG00000000148	FBXO33 (ENSELUG00000005562)	fam177a1 (ENSELUG00000005577)	ppp2r3c (ENSELUG00000005598)	PRORP (ENSELUG00000005618)	PSMA6 (ENSELUG00000005656)	nfkbia (ENSELUG00000000176)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000156452.b #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000156452.b #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000156452.b #22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000156452.b #22
Denticle herring	MODERN SPECIES		elavl2 (ENSDCDG00000004298)	adh8a (ENSDCDG00000004391)	metap1 (ENSDCDG00000004459)	OTOF (ENSDCDG00000004576)	ENSDCDG00000004744	DCTN1 (ENSDCDG00000004926)	txlnbb (ENSDCDG00000015046)	GJE1 (ENSDCDG00000015050)	PTK2B (ENSDCDG00000015072)	ENSDCDG00000015417	plaat1l (ENSDCDG00000015418)	ENSDCDG00000015424	ENSDCDG00000015431	ENSDCDG00000015432	sdsl (ENSDCDG00000015433)	ENSDCDG00000015434 #22	ENSDCDG00000015440	GPR135 (ENSDCDG00000015441)	jkamp (ENSDCDG00000015442) #24	LRFN5 (ENSDCDG00000015445)	ENSDCDG00000015452	ENSDCDG00000015457	ENSDCDG00000015460	pnn (ENSDCDG00000015462)	gemin2 (ENSDCDG00000015473)	ENSDCDG00000015493	ENSDCDG00000015524	FBXO33 (ENSDCDG00000015691)	fam177a1 (ENSDCDG00000015695)	ppp2r3c (ENSDCDG00000015701)	PRORP (ENSDCDG00000015757)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000156452.b #22
Acanthomorphata	ANCESTRAL SPECIES	421																ENSGT00940000156452.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24
Euacanthomorphacea	ANCESTRAL SPECIES	65	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000154245.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000161352.e	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a	ENSGT00390000003303	ENSGT00390000015102.a.b
Percomorphaceae	ANCESTRAL SPECIES	58	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000154245.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000161352.e	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a	ENSGT00390000003303	ENSGT00390000015102.a.b
Tiger tail seahorse	MODERN SPECIES	419										ENSHCOG00000019122	ccn6 (ENSHCOG00000019108)	fam241a (ENSHCOG00000019093)	jkamp (ENSHCOG00000019089) #24	GPR135 (ENSHCOG00000019069)	ENSHCOG00000019058	ENSHCOG00000019042 #22	ENSHCOG00000018990	ENSHCOG00000018980	ENSHCOG00000018970
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000154245.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.a.a	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000154713.B	ENSGT00940000154245.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000163359.a.b	ENSGT00940000162083	ENSGT00940000159071.y.b	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT01030000235133	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.a.a	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303
Atherinomorphae	ANCESTRAL SPECIES	45			ENSGT00390000002237	ENSGT00590000083139.c	ENSGT00390000009688	ENSGT00940000163359.a.b	ENSGT00940000162083	ENSGT00940000159071.y.b.e.a	ENSGT00940000159071.y.b.e.b	ENSGT00940000156946	ENSGT00940000154713.B	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT01030000235133.a.b	ENSGT00940000155887.a	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00390000011980.a.j	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.a.a	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303
Cyprinodontiformes	ANCESTRAL SPECIES	23	ENSGT00950000183136.a.a	ENSGT00940000154785.A	ENSGT00940000156087.b	ENSGT00390000016577.a	ENSGT00910000145250	ENSGT00410000026259	ENSGT00940000163359.a.b	ENSGT00940000162083	ENSGT00940000159071.y.b.e.a	ENSGT00940000159071.y.b.e.b	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT01030000235133.a.b	ENSGT00940000155887.a	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00390000011980.a.j	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.a.a	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00390000006240	ENSGT00940000154730.a	ENSGT00940000155490.b	ENSGT00730000112193	ENSGT00390000006979.b	ENSGT00550000074847	ENSGT00940000159462.a.a	ENSGT00390000001830	ENSGT00950000183075.a.a.a.b.db	ENSGT00940000159071.y.b.e.a	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT01030000235133.a.b	ENSGT00940000155887.a	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT00390000011980.a.j	ENSGT01100000263483.E.b.a.a.a	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00390000006240	ENSGT00940000154730.a	ENSGT00940000155490.b	ENSGT00730000112193	ENSGT00390000006979.b	ENSGT00550000074847	ENSGT00940000159462.a.a	ENSGT00390000001830	ENSGT00950000183075.a.a.a.b.db	ENSGT00940000159071.y.b.e.a	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT01030000235133.a.b	ENSGT00940000155887.a	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT00390000011980.a.j	ENSGT01100000263483.E.b.a.a.a	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303
Platyfish	MODERN SPECIES	10	PRIMA1 (ENSXMAG00000013586)	asb2b (ENSXMAG00000013587)	OTUB2 (ENSXMAG00000013596)	DDX24 (ENSXMAG00000013600)	ENSXMAG00000023720	ENSXMAG00000013610	atxn3 (ENSXMAG00000022016)	ENSXMAG00000029729	UBR1 (ENSXMAG00000013626)	CCDC85C (ENSXMAG00000028397)	enpep (ENSXMAG00000013706)	LRIT3 (ENSXMAG00000013742)	fam241a (ENSXMAG00000021205)	jkamp (ENSXMAG00000013744) #24	GPR135 (ENSXMAG00000013746)	ENSXMAG00000013747 #22	ENSXMAG00000013756	ENSXMAG00000023436	gja10a (ENSXMAG00000013762)	ENSXMAG00000024793	ENSXMAG00000013764	gabrr2a (ENSXMAG00000009234)	ENSXMAG00000021831	syne3 (ENSXMAG00000024025)	ENSXMAG00000027302	ENSXMAG00000021631	ENSXMAG00000021392	ENSXMAG00000027338	CLMN (ENSXMAG00000012164)	dicer1 (ENSXMAG00000015721)	ENSXMAG00000024336
Poecilia	ANCESTRAL SPECIES	10	ENSGT00390000006240	ENSGT00940000154730.a	ENSGT00940000155490.b	ENSGT00730000112193	ENSGT00390000006979.b	ENSGT00550000074847	ENSGT00940000159462.a.a	ENSGT00390000001830	ENSGT00950000183075.a.a.a.b.db	ENSGT00940000159071.y.b.e.a	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT00390000011980.a.j	ENSGT01100000263483.E.b.a.a.a	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b
NAME_6	ANCESTRAL SPECIES	6	ENSGT00390000006240	ENSGT00940000154730.a	ENSGT00940000155490.b	ENSGT00730000112193	ENSGT00390000006979.b	ENSGT00550000074847	ENSGT00940000159462.a.a	ENSGT00390000001830	ENSGT00950000183075.a.a.a.b.db	ENSGT00940000159071.y.b.e.a	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT00390000011980.a.j	ENSGT01100000263483.E.b.a.a.a	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b
Amazon molly	MODERN SPECIES	305	PRIMA1 (ENSPFOG00000011405)	FAM181A (ENSPFOG00000020291)	asb2b (ENSPFOG00000011343)	ENSPFOG00000011298	OTUB2 (ENSPFOG00000022892)	DDX24 (ENSPFOG00000011214)	ENSPFOG00000011180	atxn3 (ENSPFOG00000011116)	UBR1 (ENSPFOG00000010539)	CCDC85C (ENSPFOG00000010489)	enpep (ENSPFOG00000010136)	lrit3b (ENSPFOG00000010091)	fam241a (ENSPFOG00000010085)	jkamp (ENSPFOG00000010047) #24	GPR135 (ENSPFOG00000020290)	ENSPFOG00000009631 #22	ENSPFOG00000009463	ENSPFOG00000009427	gja10a (ENSPFOG00000020289)	ENSPFOG00000009264	gabrr2a (ENSPFOG00000009107)	syne3 (ENSPFOG00000008988)	ENSPFOG00000008878	ENSPFOG00000008875	CLMN (ENSPFOG00000008839)	dicer1 (ENSPFOG00000008531)	gsc (ENSPFOG00000008510)	FLRT2 (ENSPFOG00000008499)	mgst1.1 (ENSPFOG00000008473)	zgc:152658 (ENSPFOG00000008461)	galcb (ENSPFOG00000008040)
NAME_4	ANCESTRAL SPECIES	18	ENSGT00390000006240	ENSGT00940000154730.a	ENSGT00940000155490.b	ENSGT00390000006979.b	ENSGT00550000074847	ENSGT00940000159462.a.a	ENSGT00390000001830	ENSGT00950000183075.a.a.a.b.db	ENSGT00940000159071.y.b.e.a	ENSGT00940000159071.y.b.f	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT00390000011980.a.j	ENSGT01100000263483.E.b.a.a.a	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b
Sheepshead minnow	MODERN SPECIES	814															GPR135 (ENSCVAG00000019789)	ENSCVAG00000019798 #22	ENSCVAG00000019807	ENSCVAG00000019813	gja10a (ENSCVAG00000019824)	ENSCVAG00000019857	gabrr2a (ENSCVAG00000019904)	syne3 (ENSCVAG00000019952)	ENSCVAG00000020006	CLMN (ENSCVAG00000020014)	dicer1 (ENSCVAG00000020035)	gsc (ENSCVAG00000000515)
Mummichog	MODERN SPECIES	620										ENSFHEG00000002521	enpep (ENSFHEG00000002514)	lrit3b (ENSFHEG00000002486)	ENSFHEG00000002464	jkamp (ENSFHEG00000002476) #24	GPR135 (ENSFHEG00000002459)	ENSFHEG00000002452 #22	ENSFHEG00000002444	ENSFHEG00000002421	gja10a (ENSFHEG00000002396)	ENSFHEG00000002389	gabrr2a (ENSFHEG00000002379)	syne3 (ENSFHEG00000002363)
Aplocheiloidei	ANCESTRAL SPECIES	483															ENSGT00950000182998.A	ENSGT00940000156452.b #22
Mangrove rivulus	MODERN SPECIES	508	ENSKMAG00000011133	fgfr3 (ENSKMAG00000011175)	letm1 (ENSKMAG00000011368)	nsd2 (ENSKMAG00000011430)	jade1 (ENSKMAG00000011484)	asmt2 (ENSKMAG00000011527)	pgrmc2 (ENSKMAG00000011556)	ENSKMAG00000011589	ahsa1b (ENSKMAG00000011676)	cdca4 (ENSKMAG00000011707)	ENSKMAG00000011730	lrit3b (ENSKMAG00000011743)	jkamp (ENSKMAG00000011758) #24	fam241a (ENSKMAG00000011779)	GPR135 (ENSKMAG00000011784)	ENSKMAG00000011793 #22
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000154071.A.h	ENSGT00940000155959	ENSGT00940000155517	ENSGT01100000263497.C	ENSGT00940000161329	ENSGT00940000157418.b	ENSGT00940000156512.b.a	ENSGT00940000156512.a	ENSGT00440000035378.d	ENSGT00720000108846.a	ENSGT00940000156810.b.a.b	ENSGT00390000014318	ENSGT00940000156005	ENSGT00940000158846	ENSGT00390000018097 #24	ENSGT00940000156452.b #22	ENSGT00940000154677.b.a	ENSGT00940000156886.D	ENSGT00510000047831	ENSGT00940000161107	ENSGT00940000161610	ENSGT00940000159896	ENSGT00730000111119	ENSGT00940000159456	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Oryzias_a	ANCESTRAL SPECIES	44	ENSGT00940000154071.A.h	ENSGT00940000155959	ENSGT00940000155517	ENSGT01100000263497.C	ENSGT00940000161329	ENSGT00940000157418.b	ENSGT00940000156512.b.a	ENSGT00940000182028	ENSGT00440000035378.d	ENSGT00720000108846.a	ENSGT00940000156810.b.a.b	ENSGT00390000014318	ENSGT00940000156005	ENSGT00940000158846	ENSGT00390000018097 #24	ENSGT00940000156452.b #22	ENSGT00940000154677.b.a	ENSGT00940000156886.D	ENSGT00510000047831	ENSGT00940000161107	ENSGT00940000161610	ENSGT00940000159896	ENSGT00730000111119	ENSGT00940000159456	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Japanese Medaka HdrR	MODERN SPECIES	14	tmx1 (ENSORLG00000008892)	frmd6 (ENSORLG00000008880)	gng2 (ENSORLG00000008863)	dusp23a (ENSORLG00000008858)	txlnbb (ENSORLG00000026561)	ENSORLG00000024933	ENSORLG00000025518	fuca2 (ENSORLG00000008832)	TATDN3 (ENSORLG00000008804)	COQ8A (ENSORLG00000019784)	exd2 (ENSORLG00000019790)	numb (ENSORLG00000018813)	ENSORLG00000028290	GALNT16 (ENSORLG00000008784)	jkamp (ENSORLG00000008744) #24	ENSORLG00000008721 #22	ENSORLG00000023887	hadhab (ENSORLG00000008697)	RPS6KA5 (ENSORLG00000008665)	ENSORLG00000026694	mbip (ENSORLG00000008632)	nkx2.1 (ENSORLG00000029254)	ENSORLG00000024864	NKX2-8 (ENSORLG00000008612)	pax9 (ENSORLG00000022000)	ENSORLG00000026009	slc25a21 (ENSORLG00000008606)	plekhh1 (ENSORLG00000008578)	ENSORLG00000023746	ENSORLG00000023299	rmnd1 (ENSORLG00000018795)
Chinese medaka	MODERN SPECIES	999																ENSOSIG00000005191 #22	ENSOSIG00000005945	hadhab (ENSOSIG00000005956)	ENSOSIG00000007034	mbip (ENSOSIG00000007054)	nkx2.1 (ENSOSIG00000007057)
Oryzias_b	ANCESTRAL SPECIES	71	ENSGT00940000154071.A.h	ENSGT00940000155959	ENSGT00940000155517	ENSGT01100000263497.C	ENSGT00940000161329	ENSGT00940000157418.b	ENSGT00940000156512.b.a	ENSGT00940000156512.a	ENSGT00440000035378.d	ENSGT00720000108846.a	ENSGT00940000156810.b.a.b	ENSGT00390000014318	ENSGT00940000156005	ENSGT00940000158846	ENSGT00390000018097 #24	ENSGT00940000156452.b #22	ENSGT00940000164115.B.b.d.l.b	ENSGT00940000154677.b.a	ENSGT00940000156886.D	ENSGT00510000047831	ENSGT00940000161107	ENSGT00940000161610	ENSGT00940000159896	ENSGT00730000111119	ENSGT00940000159456	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00730000111123
Indian medaka	MODERN SPECIES		COQ8A (ENSOMEG00000023393)	krit1 (ENSOMEG00000023406)	cyp51 (ENSOMEG00000023434)	ENSOMEG00000023464	ENSOMEG00000023478	MTERF1 (ENSOMEG00000023485)	dus3l (ENSOMEG00000023500)	ENSOMEG00000023503	cndp2 (ENSOMEG00000023514)	RECQL4 (ENSOMEG00000023534)	slc39a4 (ENSOMEG00000023543)	exd2 (ENSOMEG00000023552)	numb (ENSOMEG00000023564)	GALNT16 (ENSOMEG00000023575)	jkamp (ENSOMEG00000023589) #24	ENSOMEG00000023597 #22	ENSOMEG00000023634	ENSOMEG00000023647	ENSOMEG00000023650	hadhab (ENSOMEG00000023658)	RPS6KA5 (ENSOMEG00000023672)	mbip (ENSOMEG00000023679)	nkx2.1 (ENSOMEG00000023684)	NKX2-8 (ENSOMEG00000023686)	pax9 (ENSOMEG00000023688)	slc25a21 (ENSOMEG00000023698)	plekhh1 (ENSOMEG00000023711)	rmnd1 (ENSOMEG00000023717)	ENSOMEG00000023719	ENSOMEG00000023726	STX11 (ENSOMEG00000023731)
Ovalentaria_B	ANCESTRAL SPECIES	121																ENSGT00940000156452.b #22	ENSGT00940000177099	ENSGT00940000158228.b
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000156452.b #22
Midas cichlid	MODERN SPECIES	1035																ENSACIG00000003235 #22
Pomacentridae	DUPLICATION
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000156452.b.a #22
Bicolor damselfish	MODERN SPECIES	2148																ENSSPAG00000004047 #22	ENSSPAG00000003966 #22	ENSSPAG00000003948	ENSSPAG00000003929	ENSSPAG00000003919
Pomacentridae	ANCESTRAL SPECIES	393																ENSGT00940000156452.b.b #22	ENSGT00940000177099
Pomacentridae_A	ANCESTRAL SPECIES	190															ENSGT00940000177099	ENSGT00940000156452.b.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000154340.A	ENSGT00940000156627.b	ENSGT00940000154713.B	ENSGT00390000018121	ENSGT00940000156728	ENSGT00910000144274	ENSGT00390000013159	ENSGT00940000158993	ENSGT00940000162083	ENSGT00940000156946.j	ENSGT00990000203829	ENSGT01100000263524.I
Amphiprion	ANCESTRAL SPECIES	224															ENSGT00940000177099	ENSGT00940000156452.b.b #22	ENSGT00950000182998.A	ENSGT00390000018097 #24	ENSGT00940000154340.A	ENSGT00940000156627.b	ENSGT00940000154713.B	ENSGT00390000018121	ENSGT00940000156728	ENSGT00910000144274	ENSGT00390000013159	ENSGT00940000158993	ENSGT00940000162083	ENSGT00940000156946.j	ENSGT00990000203829	ENSGT00390000004599.j	ENSGT01100000263524.I
Orange clownfish	MODERN SPECIES	9	ENSAPEG00000006324	ENSAPEG00000006360	ENSAPEG00000006380	ENSAPEG00000006399	ENSAPEG00000006420	ENSAPEG00000006479	ENSAPEG00000006492	ENSAPEG00000006517	ENSAPEG00000006541	APOB (ENSAPEG00000006597)	ldah (ENSAPEG00000006758)	alkbh1 (ENSAPEG00000006841)	ENSAPEG00000006891	ENSAPEG00000006900	ENSAPEG00000006922	ENSAPEG00000006976 #22	ENSAPEG00000007520	ENSAPEG00000007541	GPR135 (ENSAPEG00000007560)	jkamp (ENSAPEG00000007572) #24	fam241a (ENSAPEG00000007625)	lrit3b (ENSAPEG00000007633)	ENSAPEG00000007704	commd8 (ENSAPEG00000007737)	atp10d (ENSAPEG00000007748)	dapp1 (ENSAPEG00000007866)	lamtor3 (ENSAPEG00000007885)	osr1 (ENSAPEG00000007915)	HHIPL1 (ENSAPEG00000007926)	enpep (ENSAPEG00000007986)	ENSAPEG00000008582
Clown anemonefish	MODERN SPECIES	2673														ENSAOCG00000020006	ENSAOCG00000019995	ENSAOCG00000019900 #22
Spiny chromis	MODERN SPECIES	2380															ENSAPOG00000006962	ENSAPOG00000006942 #22	GPR135 (ENSAPOG00000006859)	jkamp (ENSAPOG00000006850) #24	fam241a (ENSAPOG00000006819)
Bicolor damselfish	MODERN SPECIES	2148															ENSSPAG00000004047 #22	ENSSPAG00000003966 #22	ENSSPAG00000003948	ENSSPAG00000003929	ENSSPAG00000003919
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT01100000263483.E.b.a.a.b
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000161352.e	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.a.b
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.a.b	ENSGT01100000263483.E.b.a.b
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	160	dapp1 (ENSLBEG00000007889)	atp10d (ENSLBEG00000007926)	commd8 (ENSLBEG00000007999)	ENSLBEG00000008016	ENSLBEG00000008049	GABRG1 (ENSLBEG00000008070)	ENSLBEG00000008110	ENSLBEG00000008146	rrh (ENSLBEG00000008172)	enpep (ENSLBEG00000008259)	lrit3b (ENSLBEG00000008413)	ENSLBEG00000008422	jkamp (ENSLBEG00000008442) #24	GPR135 (ENSLBEG00000008474)	ENSLBEG00000008484 #22	ENSLBEG00000008510 #22	ENSLBEG00000008555	ENSLBEG00000008586	gja10a (ENSLBEG00000008641)	ANKRD6 (ENSLBEG00000008663)	rragd (ENSLBEG00000008694)	gabrr2a (ENSLBEG00000008742)	syne3 (ENSLBEG00000008784)	ENSLBEG00000008839	dicer1 (ENSLBEG00000008928)
Ballan wrasse	MODERN SPECIES	160	lamtor3 (ENSLBEG00000007853)	dapp1 (ENSLBEG00000007889)	atp10d (ENSLBEG00000007926)	commd8 (ENSLBEG00000007999)	ENSLBEG00000008016	ENSLBEG00000008049	GABRG1 (ENSLBEG00000008070)	ENSLBEG00000008110	ENSLBEG00000008146	rrh (ENSLBEG00000008172)	enpep (ENSLBEG00000008259)	lrit3b (ENSLBEG00000008413)	ENSLBEG00000008422	jkamp (ENSLBEG00000008442) #24	GPR135 (ENSLBEG00000008474)	ENSLBEG00000008484 #22	ENSLBEG00000008510 #22	ENSLBEG00000008555	ENSLBEG00000008586	gja10a (ENSLBEG00000008641)	ANKRD6 (ENSLBEG00000008663)	rragd (ENSLBEG00000008694)	gabrr2a (ENSLBEG00000008742)	syne3 (ENSLBEG00000008784)	ENSLBEG00000008839	dicer1 (ENSLBEG00000008928)
Eupecaria_B	ANCESTRAL SPECIES	30	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT01100000263483.E.b.a.a.b
Eupecaria_C	ANCESTRAL SPECIES	40	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000161352.e	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b
Gilthead seabream	MODERN SPECIES	7	syne3 (ENSSAUG00010019693)	gabrr2a (ENSSAUG00010019692)	rragd (ENSSAUG00010019689)	ANKRD6 (ENSSAUG00010019687)	gja10a (ENSSAUG00010019685)	ENSSAUG00010019674	ENSSAUG00010019672	ENSSAUG00010019670	ENSSAUG00010019668	jkamp (ENSSAUG00010019666) #24	ENSSAUG00010019664	lrit3b (ENSSAUG00010019662)	enpep (ENSSAUG00010019647)	rrh (ENSSAUG00010019635)	GPR135 (ENSSAUG00010019631)	ENSSAUG00010019556 #22	ENSSAUG00010019548	ENSSAUG00010019545	SPTLC2 (ENSSAUG00010018435)	ENSSAUG00010018350	adh5 (ENSSAUG00010017106)	metap1 (ENSSAUG00010016989)	eif4eb (ENSSAUG00010016925)	zgc:100846 (ENSSAUG00010016922)	ENSSAUG00010016913	kiaa1109 (ENSSAUG00010016812)	ENSSAUG00010016805	sntg2 (ENSSAUG00010016803)	TPO (ENSSAUG00010016769)	ENSSAUG00010016764	ENSSAUG00010016757
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	16	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000161352.e	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b
European seabass	MODERN SPECIES	2	lamtor3 (ENSDLAG00005017937)	dapp1 (ENSDLAG00005026970)	atp10d (ENSDLAG00005017172)	commd8 (ENSDLAG00005017077)	ENSDLAG00005016996	ENSDLAG00005034857	ENSDLAG00005016961	ENSDLAG00005016931	ENSDLAG00005016924	rrh (ENSDLAG00005016912)	ENSDLAG00005016662	lrit3b (ENSDLAG00005016643)	ENSDLAG00005016636	ENSDLAG00005027400 #24	ENSDLAG00005016582	ENSDLAG00005015623 #22	ENSDLAG00005015569	ENSDLAG00005015525	gja10a (ENSDLAG00005015516)	ENSDLAG00005015497	ENSDLAG00005014114	ENSDLAG00005003984	rragd (ENSDLAG00005034769)	gabrr2a (ENSDLAG00005033998)	syne3 (ENSDLAG00005015426)	CLMN (ENSDLAG00005015362)	DICER1 (ENSDLAG00005015215)	GSC (ENSDLAG00005031602)	ENSDLAG00005026676	ENSDLAG00005031505	ENSDLAG00005032541
Large yellow croaker	MODERN SPECIES	477	egln3 (ENSLCRG00005010568)	sptssa (ENSLCRG00005010569)	eapp (ENSLCRG00005010570)	PRKD1 (ENSLCRG00005010588)	foxg1a (ENSLCRG00005013720)	ehd4 (ENSLCRG00005013724)	g2e3 (ENSLCRG00005013765)	dhrs13a.1 (ENSLCRG00005013768)	ENSLCRG00005013769	rrh (ENSLCRG00005013770)	enpep (ENSLCRG00005013775)	lrit3b (ENSLCRG00005013888)	fam241a (ENSLCRG00005013890)	jkamp (ENSLCRG00005013891) #24	GPR135 (ENSLCRG00005013893)	ENSLCRG00005013904 #22	ENSLCRG00005014260	ENSLCRG00005014264	ENSLCRG00005014267	ENSLCRG00005014269	ENSLCRG00005014282	esr2b (ENSLCRG00005014772)	ENSLCRG00005014810	gphb5 (ENSLCRG00005014819)	KCNH5 (ENSLCRG00005014823)	wdr89 (ENSLCRG00005016122)	ENSLCRG00005016123	vrk1 (ENSLCRG00005016125)	ENSLCRG00005016135	ak7b (ENSLCRG00005000083)	galcb (ENSLCRG00005000160)
Perciformes	ANCESTRAL SPECIES	34	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.a.b	ENSGT01100000263483.E.b.a.b
Cottioidei	ANCESTRAL SPECIES	45	ENSGT00910000145250	ENSGT00390000016904	ENSGT00390000016577.a	ENSGT00940000156087.b	ENSGT00940000154785.A	ENSGT00950000183136.a.a	ENSGT00390000002237	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000161352.e	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303
Lumpfish	MODERN SPECIES	14	adi1 (ENSCLMG00005014039)	dnal1 (ENSCLMG00005014035)	ENSCLMG00005012347	PALS1 (ENSCLMG00005012278)	ccdc88c (ENSCLMG00005011622)	GPR68 (ENSCLMG00005011618)	DGLUCY (ENSCLMG00005011435)	ENSCLMG00005011429	ENSCLMG00005011428	rrh (ENSCLMG00005011419)	enpep (ENSCLMG00005011411)	fam241a (ENSCLMG00005011407)	jkamp (ENSCLMG00005011406) #24	ENSCLMG00005011405	GPR135 (ENSCLMG00005011403)	ENSCLMG00005010956 #22	ENSCLMG00005010523	ENSCLMG00005010521	ENSCLMG00005010520	ENSCLMG00005010519	gja10a (ENSCLMG00005010517)	rragd (ENSCLMG00005010516)	ENSCLMG00005010515	ENSCLMG00005010514	gabrr2a (ENSCLMG00005010512)	syne3 (ENSCLMG00005010511)	ENSCLMG00005010510	dicer1 (ENSCLMG00005009566)	gsc (ENSCLMG00005009560)	ENSCLMG00005009559	FLRT2 (ENSCLMG00005009557)
Stickleback	MODERN SPECIES	103				PALS1 (ENSGACG00000001891)	ccdc88c (ENSGACG00000001898)	GPR68 (ENSGACG00000001915)	DGLUCY (ENSGACG00000001939)	ENSGACG00000001946	ENSGACG00000001954	rrh (ENSGACG00000001957)	enpep (ENSGACG00000001963)	lrit3b (ENSGACG00000001983)	fam241a (ENSGACG00000001986)	jkamp (ENSGACG00000001988) #24	GPR135 (ENSGACG00000001995)	ENSGACG00000001996 #22	ENSGACG00000002001	ENSGACG00000002017
Perciformes_a	ANCESTRAL SPECIES	44	ENSGT00940000153168.C.a.b	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b
Pike perch	MODERN SPECIES	39	zgc:123321 (ENSSLUG00000019814)	lamtor3 (ENSSLUG00000019817)	dapp1 (ENSSLUG00000019821)	atp10d (ENSSLUG00000019829)	commd8 (ENSSLUG00000019840)	ENSSLUG00000019850	ENSSLUG00000019864	GABRG1 (ENSSLUG00000019882)	ENSSLUG00000020092	ENSSLUG00000020100	rrh (ENSSLUG00000020103)	enpep (ENSSLUG00000020114)	fam241a (ENSSLUG00000020138)	jkamp (ENSSLUG00000020140) #24	GPR135 (ENSSLUG00000020142)	ENSSLUG00000020187 #22	ENSSLUG00000021440	ENSSLUG00000021476	ENSSLUG00000021480	gja10a (ENSSLUG00000021482)	ENSSLUG00000021485	rragd (ENSSLUG00000021487)	gabrr2a (ENSSLUG00000021493)	syne3 (ENSSLUG00000021504)	CLMN (ENSSLUG00000021513)	dicer1 (ENSSLUG00000021548)	gsc (ENSSLUG00000021670)	FLRT2 (ENSSLUG00000021673)	nubpl (ENSSLUG00000005625)	ARHGAP5 (ENSSLUG00000005743)	ENSSLUG00000005747
Channel bull blenny	MODERN SPECIES	14	ENSCGOG00000007550	rdh14a (ENSCGOG00000007552)	zgc:123321 (ENSCGOG00000007554)	lamtor3 (ENSCGOG00000007557)	dapp1 (ENSCGOG00000007573)	atp10d (ENSCGOG00000007577)	ENSCGOG00000007725	ENSCGOG00000007753	GABRG1 (ENSCGOG00000008746)	ENSCGOG00000008772	ENSCGOG00000008810	rrh (ENSCGOG00000008818)	fam241a (ENSCGOG00000008868)	jkamp (ENSCGOG00000008872) #24	GPR135 (ENSCGOG00000008890)	ENSCGOG00000008895 #22	ENSCGOG00000008906	gja10a (ENSCGOG00000008929)	ENSCGOG00000008941	rragd (ENSCGOG00000008947)	syne3 (ENSCGOG00000008989)	ENSCGOG00000009009	dicer1 (ENSCGOG00000009036)	gsc (ENSCGOG00000009724)	ENSCGOG00000009733	ENSCGOG00000009740	FLRT2 (ENSCGOG00000009749)	ENSCGOG00000009750	ENSCGOG00000009752	galcb (ENSCGOG00000009787)	ak7b (ENSCGOG00000010200)
Tetraodontidae	ANCESTRAL SPECIES	127								ENSGT00940000159056.h	ENSGT00440000039367	ENSGT00940000156864.c	ENSGT00950000183031.A.a.b	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000153577.B	ENSGT00940000161060	ENSGT00940000155554	ENSGT00390000015102.a.b	ENSGT00390000003303
Tetraodon	MODERN SPECIES	1	adi1 (ENSTNIG00000000538)	trappc12 (ENSTNIG00000018768)	eipr1 (ENSTNIG00000018767)	MYT1L (ENSTNIG00000008296)	PXDN (ENSTNIG00000008295)	ENSTNIG00000008294	ENSTNIG00000000889	ENSTNIG00000008293	syne3 (ENSTNIG00000008292)	gabrr2a (ENSTNIG00000008291)	rragd (ENSTNIG00000008290)	lrit3b (ENSTNIG00000008289)	fam241a (ENSTNIG00000008288)	jkamp (ENSTNIG00000008287) #24	GPR135 (ENSTNIG00000008286)	ENSTNIG00000008285 #22	setd3 (ENSTNIG00000008284)	BCL11B (ENSTNIG00000008283)	naalad2 (ENSTNIG00000002171)	ENSTNIG00000004398	vrk1 (ENSTNIG00000006426)
Fugu	MODERN SPECIES	11	ENSTRUG00000027115	ENSTRUG00000027246	ENSTRUG00000029758	gsc (ENSTRUG00000006728)	ENSTRUG00000032094	cnep1r1 (ENSTRUG00000028315)	CLMN (ENSTRUG00000026698)	syne3 (ENSTRUG00000005974)	gabrr2a (ENSTRUG00000005681)	rragd (ENSTRUG00000029894)	lrit3b (ENSTRUG00000032702)	fam241a (ENSTRUG00000030162)	jkamp (ENSTRUG00000030178) #24	jkamp (ENSTRUG00000028171) #24	GPR135 (ENSTRUG00000005249)	ENSTRUG00000029789 #22	setd3 (ENSTRUG00000003791)	setd3 (ENSTRUG00000031774)	BCL11B (ENSTRUG00000003531)	RRAGD (ENSTRUG00000030438)	lrit3b (ENSTRUG00000031304)	ENSTRUG00000005423	ENSTRUG00000032213	ENSTRUG00000031506	ENSTRUG00000032878	vrk1 (ENSTRUG00000007835)	ENSTRUG00000026546	ak7b (ENSTRUG00000008091)	galcb (ENSTRUG00000008387)	HHIPL1 (ENSTRUG00000002127)	rtn4ip1 (ENSTRUG00000003765)
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT01100000263483.E.b.a.a.b
Carangaria	ANCESTRAL SPECIES	10	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b	ENSGT00940000155554
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b	ENSGT00940000155554
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	481							ENSLCAG00010000382	ENSLCAG00010000386	rrh (ENSLCAG00010000390)	enpep (ENSLCAG00010000536)	lrit3b (ENSLCAG00010000818)	fam241a (ENSLCAG00010000822)	jkamp (ENSLCAG00010000826) #24	ENSLCAG00010000831	GPR135 (ENSLCAG00010000833)	ENSLCAG00010000851 #22	map3k7 (ENSLCAG00010000882)	ENSLCAG00010000888	gja10a (ENSLCAG00010000892)	rragd (ENSLCAG00010000911)
Barramundi perch	MODERN SPECIES	877														ENSLCAG00010022920	GPR135 (ENSLCAG00010022922)	ENSLCAG00010022930 #22
Seriola	ANCESTRAL SPECIES	3	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT01090000260070.D.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a.c.b.a.a	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b
Greater amberjack	MODERN SPECIES	62	atp10d (ENSSDUG00000021005)	ENSSDUG00000021027	commd8 (ENSSDUG00000021031)	ENSSDUG00000021040	ENSSDUG00000021071	GABRG1 (ENSSDUG00000021234)	ENSSDUG00000021258	ENSSDUG00000021269	ENSSDUG00000021277	rrh (ENSSDUG00000021290)	enpep (ENSSDUG00000021313)	lrit3b (ENSSDUG00000021362)	ENSSDUG00000021371	jkamp (ENSSDUG00000021377) #24	GPR135 (ENSSDUG00000021398)	ENSSDUG00000021411 #22	ENSSDUG00000021462	ENSSDUG00000021470	gja10a (ENSSDUG00000021476)	ENSSDUG00000021480	ENSSDUG00000021492	ENSSDUG00000021525	ENSSDUG00000021569	ENSSDUG00000021582	rragd (ENSSDUG00000021595)	gabrr2a (ENSSDUG00000021625)	syne3 (ENSSDUG00000021629)	CLMN (ENSSDUG00000021644)	dicer1 (ENSSDUG00000021652)	gsc (ENSSDUG00000021690)	FLRT2 (ENSSDUG00000021694)
Yellowtail amberjack	MODERN SPECIES	3240	dapp1 (ENSSLDG00000013366)	ENSSLDG00000013355	atp10d (ENSSLDG00000013315)	commd8 (ENSSLDG00000013291)	ENSSLDG00000013268	ENSSLDG00000013153	GABRG1 (ENSSLDG00000013115)	ENSSLDG00000013101	ENSSLDG00000013088	rrh (ENSSLDG00000013069)	enpep (ENSSLDG00000013029)	lrit3b (ENSSLDG00000013009)	ENSSLDG00000012997	jkamp (ENSSLDG00000012969) #24	GPR135 (ENSSLDG00000012952)	ENSSLDG00000012562 #22	ENSSLDG00000012442	ENSSLDG00000012423	gja10a (ENSSLDG00000012410)	ENSSLDG00000012347	ANKRD6 (ENSSLDG00000012301)	rragd (ENSSLDG00000012262)	gabrr2a (ENSSLDG00000012214)	syne3 (ENSSLDG00000012177)	CLMN (ENSSLDG00000012157)	dicer1 (ENSSLDG00000012087)	gsc (ENSSLDG00000012066)
Pleuronectoidei	ANCESTRAL SPECIES	77	ENSGT00940000153168.C.a.b	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000157266.a	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22
Turbot	MODERN SPECIES	8	ENSSMAG00000013289	ENSSMAG00000013320	ENSSMAG00000013346	ENSSMAG00000013362	ENSSMAG00000033470	ENSSMAG00000013373	ENSSMAG00000026866	ENSSMAG00000028545	ENSSMAG00000013391	ENSSMAG00000013451	ENSSMAG00000013456	ENSSMAG00000013483	ENSSMAG00000013577	ENSSMAG00000013584 #24	ENSSMAG00000024234	ENSSMAG00000015151 #22	ENSSMAG00000015132	ENSSMAG00000023267	ENSSMAG00000035287
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00940000158993	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000156627.b	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000161352.e	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000178787	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT01100000263483.E.b.a.a.b
Zig-zag eel	MODERN SPECIES	14	lamtor3 (ENSMAMG00000016360)	dapp1 (ENSMAMG00000016381)	atp10d (ENSMAMG00000016401)	commd8 (ENSMAMG00000025871)	ENSMAMG00000016457	ENSMAMG00000016472	ENSMAMG00000016487	ENSMAMG00000016509	rrh (ENSMAMG00000016514)	ENSMAMG00000016540	lrit3b (ENSMAMG00000016590)	ENSMAMG00000027692	ENSMAMG00000016613	ENSMAMG00000016620 #24	ENSMAMG00000016628	ENSMAMG00000016640 #22	ENSMAMG00000028303	ENSMAMG00000016710	gja10a (ENSMAMG00000016721)	gabrr2a (ENSMAMG00000016732)	syne3 (ENSMAMG00000016750)	ENSMAMG00000016773	ENSMAMG00000016779	ENSMAMG00000016788	dicer1 (ENSMAMG00000016806)	ENSMAMG00000028445	gsc (ENSMAMG00000016890)	ENSMAMG00000027497	ENSMAMG00000006681	galcb (ENSMAMG00000016911)	ak7b (ENSMAMG00000016942)
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00940000162083	ENSGT00940000158993	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B	ENSGT00940000160193	ENSGT00390000014316.c.a	ENSGT00990000203829	ENSGT01100000263524.I	ENSGT00940000156946	ENSGT00940000154340.A	ENSGT00390000018097 #24	ENSGT00950000182998.A	ENSGT00940000156452.b #22	ENSGT00940000169464	ENSGT00940000158228.b	ENSGT00950000182892.b	ENSGT01090000260070.D.b	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c	ENSGT00440000039367	ENSGT00940000159056.h	ENSGT00940000156287	ENSGT00940000160635	ENSGT00940000158937.a	ENSGT01100000263483.E.b.a.b	ENSGT01100000263483.E.b.a.a.b	ENSGT00390000003303	ENSGT00390000015102.a.b
Climbing perch	MODERN SPECIES	3	ENSATEG00000016032	ENSATEG00000028632	lamtor3 (ENSATEG00000015106)	dapp1 (ENSATEG00000015093)	atp10d (ENSATEG00000014982)	commd8 (ENSATEG00000014944)	ENSATEG00000014896	ENSATEG00000014858	ENSATEG00000014822	ENSATEG00000027950	ENSATEG00000014779	ENSATEG00000014454	ENSATEG00000014405	ENSATEG00000014381 #24	ENSATEG00000014367	ENSATEG00000014304 #22	ENSATEG00000014277	ENSATEG00000028619	ENSATEG00000014248	gja10a (ENSATEG00000014235)	rragd (ENSATEG00000027221)	gabrr2a (ENSATEG00000014189)	syne3 (ENSATEG00000014170)	CLMN (ENSATEG00000014147)	dicer1 (ENSATEG00000014048)	gsc (ENSATEG00000014030)	ENSATEG00000014023	ENSATEG00000014013	galcb (ENSATEG00000013940)	ak7b (ENSATEG00000013849)	ENSATEG00000013816
Siamese fighting fish	MODERN SPECIES	12	ENSBSLG00000023514	GPR68 (ENSBSLG00000023491)	GABRG1 (ENSBSLG00000023471)	commd8 (ENSBSLG00000023453)	atp10d (ENSBSLG00000023312)	dapp1 (ENSBSLG00000023299)	lamtor3 (ENSBSLG00000023277)	osr1 (ENSBSLG00000023265)	ENSBSLG00000023240	ENSBSLG00000023235	rrh (ENSBSLG00000023225)	enpep (ENSBSLG00000023147)	fam241a (ENSBSLG00000023132)	jkamp (ENSBSLG00000023069) #24	GPR135 (ENSBSLG00000023062)	ENSBSLG00000022948 #22	ENSBSLG00000022841	ENSBSLG00000022813	ENSBSLG00000022794	gja10a (ENSBSLG00000022504)	rragd (ENSBSLG00000022474)	gabrr2a (ENSBSLG00000022429)	syne3 (ENSBSLG00000022381)	CLMN (ENSBSLG00000022329)	dicer1 (ENSBSLG00000021344)	gsc (ENSBSLG00000021209)	FLRT2 (ENSBSLG00000021201)	ENSBSLG00000021106	ENSBSLG00000020931	ENSBSLG00000020240	galcb (ENSBSLG00000019867)
Pinecone sodierfish	MODERN SPECIES	14	lamtor3 (ENSMMDG00005006464)	zgc:123321 (ENSMMDG00005006465)	rdh14a (ENSMMDG00005006466)	osr1 (ENSMMDG00005006467)	sult3st4 (ENSMMDG00005006469)	alkbh1 (ENSMMDG00005006475)	slirp (ENSMMDG00005006478)	adck1 (ENSMMDG00005006484)	nrxn3a (ENSMMDG00005006505)	ENSMMDG00005007041	dio2 (ENSMMDG00005007042)	ENSMMDG00005007044	pomk (ENSMMDG00005007046)	TSHR (ENSMMDG00005007048)	STON2 (ENSMMDG00005007052)	ENSMMDG00005007065 #22	ENSMMDG00005007147	ENSMMDG00005007198	gja10a (ENSMMDG00005007201)	ENSMMDG00005007205	rragd (ENSMMDG00005007206)	gabrr2a (ENSMMDG00005007216)	syne3 (ENSMMDG00005007221)	ENSMMDG00005007224	ENSMMDG00005007225	dicer1 (ENSMMDG00005007238)	gsc (ENSMMDG00005007373)	FLRT2 (ENSMMDG00005007376)	zgc:152658 (ENSMMDG00005007377)	galcb (ENSMMDG00005007382)	ak7b (ENSMMDG00005007403)
Elephant shark	MODERN SPECIES	1513	naa30 (ENSCMIG00000000905) #9	ENSCMIG00000000909 #10	SLC35F4 (ENSCMIG00000000913) #11	ENSCMIG00000000919 #12	actr10 (ENSCMIG00000000930) #13	ENSCMIG00000000948	psma3 (ENSCMIG00000001027) #14	arid4a (ENSCMIG00000001314) #15	ENSCMIG00000001560 ##17	timm9 (ENSCMIG00000001565)	ENSCMIG00000001573 #19	ENSCMIG00000001587 #19	irf2bpl (ENSCMIG00000001619)	dact1 (ENSCMIG00000001648) #20	ENSCMIG00000001652	daam1b (ENSCMIG00000001686) #22	L3HYPDH (ENSCMIG00000001723) #23	jkamp (ENSCMIG00000001735) #24	ENSCMIG00000001750	ENSCMIG00000001771	acat2 (ENSCMIG00000001776)	LRFN5 (ENSCMIG00000001782)	gemin2 (ENSCMIG00000001812)	trappc6b (ENSCMIG00000001830)	pnn (ENSCMIG00000001851)	ENSCMIG00000001900	FBXO33 (ENSCMIG00000001932)	zgc:153383 (ENSCMIG00000001938)	ppp2r3c (ENSCMIG00000001986)	ENSCMIG00000002136	psma6 (ENSCMIG00000002150)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000156452 #22
Lamprey	MODERN SPECIES	6103													wdr74 (ENSPMAG00000000842)	ENSPMAG00000000838	kif6 (ENSPMAG00000000829)	daam1b (ENSPMAG00000000819) #22	mocs1 (ENSPMAG00000000810)	commd1 (ENSPMAG00000000808)	b3gnt2a (ENSPMAG00000010427)	eif1ad (ENSPMAG00000000805)	ENSPMAG00000000785
Ciona	ANCESTRAL SPECIES																	ENSGT00940000156452 #22
Ciona intestinalis	MODERN SPECIES	1	ENSCING00000020103	ENSCING00000017363	ENSCING00000020338	ENSCING00000020128	ENSCING00000013920	ENSCING00000024414	ENSCING00000021719	ENSCING00000006319	ENSCING00000022397	ENSCING00000013922	ENSCING00000020311	ciatpsyna (ENSCING00000006323)	ENSCING00000024674	ENSCING00000009891	ENSCING00000022004	ENSCING00000006310 #22	ENSCING00000021024	ENSCING00000019257	ENSCING00000013919	ENSCING00000023360	ENSCING00000000152	ENSCING00000010498	ENSCING00000006309	ENSCING00000006286	ENSCING00000019518	ENSCING00000006261	ENSCING00000006259	ENSCING00000006255	ENSCING00000013918	ENSCING00000006253	ENSCING00000022565