Mammalia	ANCESTRAL SPECIES	4	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c #21	ENSGT00940000154431 #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405 #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Theria	DUPLICATION
Theria	DUPLICATION
Theria	ANCESTRAL SPECIES		ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405 #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405 #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Euarchontoglires_A	ANCESTRAL SPECIES	23	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167 #34	ENSGT00940000154957.B #35
Glires	ANCESTRAL SPECIES	24	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.f ##26	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167 #34	ENSGT00940000154957.B #35
Rodentia	ANCESTRAL SPECIES	12	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.a ##26	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Muroidea	ANCESTRAL SPECIES	8	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.a ##26	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000162322 #8	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.a ##26	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Murinae	ANCESTRAL SPECIES	4	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.a ##21	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.a ##26	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Mus	ANCESTRAL SPECIES	20	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000168920	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.a ##21	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000168920	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Mus_B	ANCESTRAL SPECIES	20	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000168920	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Mouse	MODERN SPECIES	15	Evx1 (ENSMUSG00000005503) #7	Hoxa13 (ENSMUSG00000038203) #8	Hoxa11 (ENSMUSG00000038210) #9	Hoxa10 (ENSMUSG00000000938) #10	Hoxa9 (ENSMUSG00000038227) #11	Hoxa7 (ENSMUSG00000038236) #12	Hoxa6 (ENSMUSG00000043219) #13	Hoxa5 (ENSMUSG00000038253) #14	Hoxa4 (ENSMUSG00000000942) #15	Hoxa3 (ENSMUSG00000079560) #16	Hoxa2 (ENSMUSG00000014704) #17	Hoxa1 (ENSMUSG00000029844) #18	Skap2 (ENSMUSG00000059182) #19	Snx10 (ENSMUSG00000038301) #20	Cbx3 (ENSMUSG00000029836) #21	Hnrnpa2b1 (ENSMUSG00000004980) #22	Nfe2l3 (ENSMUSG00000029832) #23	Npvf (ENSMUSG00000029831) #24	4921507P07Rik (ENSMUSG00000029828) #25	Cycs (ENSMUSG00000063694) #26	Osbpl3 (ENSMUSG00000029822) #27	Gsdme (ENSMUSG00000029821) #28	Pals2 (ENSMUSG00000038388) #29	Npy (ENSMUSG00000029819) #30	Stk31 (ENSMUSG00000023403) #31	Fam221a (ENSMUSG00000047115) #32	Ccdc126 (ENSMUSG00000050786) #33	Tra2a (ENSMUSG00000029817) #34	Igf2bp3 (ENSMUSG00000029814) #35	Malsu1 (ENSMUSG00000029815) #36	Gpnmb (ENSMUSG00000029816) #37
Mus_C	ANCESTRAL SPECIES	19	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000168920	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Steppe mouse	MODERN SPECIES	3410	Hoxa11 (ENSMSIG00000009809) #9	ENSMSIG00000009817	Hoxa9 (ENSMSIG00000009832) #11	Hoxa7 (ENSMSIG00000009836) #12	Hoxa6 (ENSMSIG00000009850) #13	ENSMSIG00000009856 #14	Hoxa4 (ENSMSIG00000009874) #15	Hoxa3 (ENSMSIG00000009863) #16	ENSMSIG00000009893	ENSMSIG00000009910	Hoxa2 (ENSMSIG00000009914) #17	Hoxa1 (ENSMSIG00000009971) #18	Skap2 (ENSMSIG00000009994) #19	Snx10 (ENSMSIG00000010059) #20	Cbx3 (ENSMSIG00000010130) #21	Hnrnpa2b1 (ENSMSIG00000010191) #22	Nfe2l3 (ENSMSIG00000010307) #23
spretus	MODERN SPECIES	15	MGP_SPRETEiJ_G0029394 #8	Hoxa11 (MGP_SPRETEiJ_G0029393) #9	Hoxa10 (MGP_SPRETEiJ_G0029392) #10	Hoxa9 (MGP_SPRETEiJ_G0029391) #11	Hoxa7 (MGP_SPRETEiJ_G0029390) #12	Hoxa6 (MGP_SPRETEiJ_G0029389) #13	Hoxa5 (MGP_SPRETEiJ_G0029388) #14	Hoxa4 (MGP_SPRETEiJ_G0029387) #15	Hoxa3 (MGP_SPRETEiJ_G0029386) #16	MGP_SPRETEiJ_G0029385	Hoxa2 (MGP_SPRETEiJ_G0029384) #17	Hoxa1 (MGP_SPRETEiJ_G0029383) #18	Skap2 (MGP_SPRETEiJ_G0029382) #19	Snx10 (MGP_SPRETEiJ_G0029381) #20	MGP_SPRETEiJ_G0029380 ##21	Hnrnpa2b1 (MGP_SPRETEiJ_G0029379) #22	Nfe2l3 (MGP_SPRETEiJ_G0029378) #23	Npvf (MGP_SPRETEiJ_G0029377) #24	4921507P07Rik (MGP_SPRETEiJ_G0029376) #25	Osbpl3 (MGP_SPRETEiJ_G0029375) #27	Gsdme (MGP_SPRETEiJ_G0029374) #28	Pals2 (MGP_SPRETEiJ_G0029373) #29	Npy (MGP_SPRETEiJ_G0029372) #30	Stk31 (MGP_SPRETEiJ_G0029371) #31	Fam221a (MGP_SPRETEiJ_G0029370) #32	Ccdc126 (MGP_SPRETEiJ_G0029369) #33	Tra2a (MGP_SPRETEiJ_G0029368) #34	Igf2bp3 (MGP_SPRETEiJ_G0029367) #35	Malsu1 (MGP_SPRETEiJ_G0029366) #36	Gpnmb (MGP_SPRETEiJ_G0029365) #37	Aoc1l3 (MGP_SPRETEiJ_G0029364)
Ryukyu mouse	MODERN SPECIES	15	Hoxa13 (MGP_CAROLIEiJ_G0028392) #8	Hoxa11 (MGP_CAROLIEiJ_G0028391) #9	Hoxa10 (MGP_CAROLIEiJ_G0028390) #10	Hoxa9 (MGP_CAROLIEiJ_G0028389) #11	Hoxa7 (MGP_CAROLIEiJ_G0028388) #12	Hoxa5 (MGP_CAROLIEiJ_G0028387) #14	Hoxa4 (MGP_CAROLIEiJ_G0028386) #15	MGP_CAROLIEiJ_G0028385	Hoxa3 (MGP_CAROLIEiJ_G0028384) #16	MGP_CAROLIEiJ_G0028383	Hoxa2 (MGP_CAROLIEiJ_G0028382) #17	Hoxa1 (MGP_CAROLIEiJ_G0028381) #18	Skap2 (MGP_CAROLIEiJ_G0028380) #19	MGP_CAROLIEiJ_G0028379 #20	MGP_CAROLIEiJ_G0028378 ##21	Hnrnpa2b1 (MGP_CAROLIEiJ_G0028377) #22	Nfe2l3 (MGP_CAROLIEiJ_G0028376) #23	Npvf (MGP_CAROLIEiJ_G0028375) #24	4921507P07Rik (MGP_CAROLIEiJ_G0028374) #25	Cycs (MGP_CAROLIEiJ_G0028373) #26	Osbpl3 (MGP_CAROLIEiJ_G0028372) #27	Gsdme (MGP_CAROLIEiJ_G0028371) #28	Pals2 (MGP_CAROLIEiJ_G0028370) #29	Npy (MGP_CAROLIEiJ_G0028369) #30	MGP_CAROLIEiJ_G0028368 #31	Fam221a (MGP_CAROLIEiJ_G0028367) #32	Ccdc126 (MGP_CAROLIEiJ_G0028366) #33	MGP_CAROLIEiJ_G0028365	Igf2bp3 (MGP_CAROLIEiJ_G0028364) #35	Malsu1 (MGP_CAROLIEiJ_G0028363) #36	Gpnmb (MGP_CAROLIEiJ_G0028362) #37
Shrew mouse	MODERN SPECIES	11	Hoxa13 (MGP_PahariEiJ_G0022142) #8	Hoxa11 (MGP_PahariEiJ_G0022141) #9	Hoxa10 (MGP_PahariEiJ_G0022140) #10	Hoxa9 (MGP_PahariEiJ_G0022139) #11	Hoxa7 (MGP_PahariEiJ_G0022138) #12	Hoxa6 (MGP_PahariEiJ_G0022137) #13	Hoxa5 (MGP_PahariEiJ_G0022136) #14	Hoxa4 (MGP_PahariEiJ_G0022135) #15	Hoxa3 (MGP_PahariEiJ_G0022134) #16	MGP_PahariEiJ_G0022133	Hoxa2 (MGP_PahariEiJ_G0022132) #17	Hoxa1 (MGP_PahariEiJ_G0022131) #18	Skap2 (MGP_PahariEiJ_G0022130) #19	Snx10 (MGP_PahariEiJ_G0022129) #20	MGP_PahariEiJ_G0022128 ##21	Hnrnpa2b1 (MGP_PahariEiJ_G0022127) #22	Nfe2l3 (MGP_PahariEiJ_G0022126) #23	Npvf (MGP_PahariEiJ_G0022125) #24	4921507P07Rik (MGP_PahariEiJ_G0022124) #25	MGP_PahariEiJ_G0022123 ##26	Osbpl3 (MGP_PahariEiJ_G0022122) #27	Gsdme (MGP_PahariEiJ_G0022121) #28	Pals2 (MGP_PahariEiJ_G0022120) #29	Npy (MGP_PahariEiJ_G0022119) #30	Stk31 (MGP_PahariEiJ_G0022118) #31	Fam221a (MGP_PahariEiJ_G0022117) #32	Ccdc126 (MGP_PahariEiJ_G0022116) #33	Tra2a (MGP_PahariEiJ_G0022115) #34	Igf2bp3 (MGP_PahariEiJ_G0022114) #35	Malsu1 (MGP_PahariEiJ_G0022113) #36	Gpnmb (MGP_PahariEiJ_G0022112) #37
Rat	MODERN SPECIES	14	Hoxa11 (ENSRNOG00000059870) #9	LOC100911668 (ENSRNOG00000065199) #10	Hoxa9 (ENSRNOG00000064322) #11	Hoxa7 (ENSRNOG00000046361) #12	LOC100911511 (ENSRNOG00000048917) #13	LOC103692127 (ENSRNOG00000047951) #14	Hoxa4 (ENSRNOG00000027365) #15	Hoxa3 (ENSRNOG00000006281) #16	Hoxa2 (ENSRNOG00000005968) #17	Hoxa1 (ENSRNOG00000005628) #18	Skap2 (ENSRNOG00000012228) #19	ENSRNOG00000064847	Snx10 (ENSRNOG00000011944) #20	AABR07060577.1 (ENSRNOG00000015328)	Cbx3 (ENSRNOG00000011814) #21	Hnrnpa2b1 (ENSRNOG00000011175) #22	Nfe2l3 (ENSRNOG00000010886) #23	Cux1-ps1 (ENSRNOG00000065301)	ENSRNOG00000062862	Npvf (ENSRNOG00000010806) #24	LOC500124 (ENSRNOG00000010594) #25	Cycs-ps9 (ENSRNOG00000010452) ##26	AC113910.1 (ENSRNOG00000033274)	Osbpl3 (ENSRNOG00000010011) #27	Gsdme (ENSRNOG00000009970) #28	Pals2 (ENSRNOG00000021579) #29	Npy (ENSRNOG00000046449) #30	RGD1564712 (ENSRNOG00000043158)	ENSRNOG00000065775	Stk31 (ENSRNOG00000057554) #31	RGD1563352 (ENSRNOG00000009583)
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Chinese hamster chok1gshd	MODERN SPECIES	212	Hoxa13 (ENSCGRG00001017295) #8	Hoxa11 (ENSCGRG00001014980) #9	Hoxa10 (ENSCGRG00001012738) #10	Hoxa9 (ENSCGRG00001007287) #11	Hoxa7 (ENSCGRG00001019884) #12	Hoxa6 (ENSCGRG00001003922) #13	Hoxa5 (ENSCGRG00001001687) #14	Hoxa4 (ENSCGRG00001000481) #15	Hoxa3 (ENSCGRG00001023867) #16	Hoxa2 (ENSCGRG00001019226) #17	Hoxa1 (ENSCGRG00001018306) #18	ENSCGRG00001016005	Skap2 (ENSCGRG00001015578) #19	Snx10 (ENSCGRG00001006115) #20	Cbx3 (ENSCGRG00001024311) #21	Hnrnpa2b1 (ENSCGRG00001022416) #22	Nfe2l3 (ENSCGRG00001020882) #23	Npvf (ENSCGRG00001013575) #24	4921507P07Rik (ENSCGRG00001011704) #25	Cycs (ENSCGRG00001008806) #26	Osbpl3 (ENSCGRG00001016467) #27	Gsdme (ENSCGRG00001000822) #28	Pals2 (ENSCGRG00001014383) #29	Npy (ENSCGRG00001016547) #30	Stk31 (ENSCGRG00001021953) #31	Fam221a (ENSCGRG00001015242) #32	Ccdc126 (ENSCGRG00001011659) #33	Tra2a (ENSCGRG00001019980) #34	Igf2bp3 (ENSCGRG00001011804) #35	Malsu1 (ENSCGRG00001007836) #36	Gpnmb (ENSCGRG00001018141) #37
Golden Hamster	MODERN SPECIES	822		ENSMAUG00000000426	ENSMAUG00000000446	Evx1 (ENSMAUG00000000608) #7	Hoxa13 (ENSMAUG00000001019) #8	Hoxa11 (ENSMAUG00000001056) #9	Hoxa10 (ENSMAUG00000001122) #10	Hoxa9 (ENSMAUG00000000669) #11	Hoxa7 (ENSMAUG00000001017) #12	Hoxa3 (ENSMAUG00000001129) #16	Hoxa6 (ENSMAUG00000001166) #13	Hoxa5 (ENSMAUG00000002058) #14	ENSMAUG00000002622 #19	Snx10 (ENSMAUG00000003697) #20	ENSMAUG00000004290 ##21	Hnrnpa2b1 (ENSMAUG00000005706) #22	ENSMAUG00000004168	Npvf (ENSMAUG00000006780) #24	4921507P07Rik (ENSMAUG00000007334) #25
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Northern American deer mouse	MODERN SPECIES	16	Hoxa13 (ENSPEMG00000024341) #8	Hoxa11 (ENSPEMG00000019890) #9	ENSPEMG00000025887	ENSPEMG00000020209 #11	ENSPEMG00000025086	Hoxa6 (ENSPEMG00000030268) #13	Hoxa5 (ENSPEMG00000029029) #14	ENSPEMG00000019740 #15	Hoxa3 (ENSPEMG00000028539) #16	Hoxa2 (ENSPEMG00000019520) #17	Hoxa1 (ENSPEMG00000020130) #18	ENSPEMG00000027861	Skap2 (ENSPEMG00000019639) #19	Snx10 (ENSPEMG00000005121) #20	Cbx3 (ENSPEMG00000020155) #21	Hnrnpa2b1 (ENSPEMG00000014384) #22	Nfe2l3 (ENSPEMG00000030696) #23	Npvf (ENSPEMG00000004324) #24	4921507P07Rik (ENSPEMG00000020256) #25	ENSPEMG00000028008 ##26	Osbpl3 (ENSPEMG00000019801) #27	Gsdme (ENSPEMG00000008779) #28	Pals2 (ENSPEMG00000019515) #29	Npy (ENSPEMG00000020414) #30	Stk31 (ENSPEMG00000020643) #31	Fam221a (ENSPEMG00000022606) #32	ENSPEMG00000027992 #33	ENSPEMG00000008564 #34	Igf2bp3 (ENSPEMG00000023450) #35	ENSPEMG00000020458 #36	Gpnmb (ENSPEMG00000001851) #37
Prairie vole	MODERN SPECIES	94	Hoxa13 (ENSMOCG00000000460) #8	Hoxa11 (ENSMOCG00000004073) #9	Hoxa10 (ENSMOCG00000011516) #10	Hoxa9 (ENSMOCG00000017667) #11	Hoxa7 (ENSMOCG00000001247) #12	Hoxa3 (ENSMOCG00000004227) #16	Hoxa6 (ENSMOCG00000010245) #13	Hoxa5 (ENSMOCG00000012515) #14	Hoxa4 (ENSMOCG00000011933) #15	ENSMOCG00000016584	Hoxa2 (ENSMOCG00000019225) #17	Hoxa1 (ENSMOCG00000005031) #18	Skap2 (ENSMOCG00000017060) #19	Snx10 (ENSMOCG00000016046) #20	Cbx3 (ENSMOCG00000008087) ##21	Hnrnpa2b1 (ENSMOCG00000009258) #22	Nfe2l3 (ENSMOCG00000011787) #23	Npvf (ENSMOCG00000009097) #24	4921507P07Rik (ENSMOCG00000011632) #25	ENSMOCG00000012702 ##26	ENSMOCG00000018163 #27	Gsdme (ENSMOCG00000018193) #28	Pals2 (ENSMOCG00000015580) #29	Npy (ENSMOCG00000011513) #30
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	724																ENSNGAG00000017486 #22	Tmprss15 (ENSNGAG00000022148)	Chodl (ENSNGAG00000004103)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1152	Hoxa11 (ENSNGAG00000023780) #9	ENSNGAG00000013764 #10	ENSNGAG00000017228	Hoxa9 (ENSNGAG00000016754) #11	Hoxa7 (ENSNGAG00000021697) #12	Hoxa6 (ENSNGAG00000012897) #13	Hoxa5 (ENSNGAG00000023140) #14	Hoxa4 (ENSNGAG00000022510) #15	Hoxa3 (ENSNGAG00000016765) #16	Hoxa2 (ENSNGAG00000014874) #17	Hoxa1 (ENSNGAG00000021363) #18	Skap2 (ENSNGAG00000016991) #19	ENSNGAG00000010519	Snx10 (ENSNGAG00000006392) #20	ENSNGAG00000024194 #21	Hnrnpa2b1 (ENSNGAG00000015156) #22	Nfe2l3 (ENSNGAG00000023028) #23	Npvf (ENSNGAG00000023484) #24	4921507P07Rik (ENSNGAG00000022528) #25	ENSNGAG00000013657 ##26	ENSNGAG00000003815	ENSNGAG00000024141 #27	ENSNGAG00000024064 #28	Pals2 (ENSNGAG00000024039) #29	Npy (ENSNGAG00000009749) #30	ENSNGAG00000008884	Stk31 (ENSNGAG00000024195) #31	Fam221a (ENSNGAG00000022352) #32	Ccdc126 (ENSNGAG00000021704) #33	ENSNGAG00000006097	Tra2a (ENSNGAG00000023805) #34
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES																	ENSJJAG00000000423 #22
Lesser Egyptian jerboa	MODERN SPECIES	1																ENSJJAG00000000278 #22
Kangaroo rat	MODERN SPECIES	395	Hoxa13 (ENSDORG00000006328) #8	Hoxa11 (ENSDORG00000006326) #9	ENSDORG00000028643	ENSDORG00000029112 #10	Hoxa9 (ENSDORG00000006323) #11	Hoxa7 (ENSDORG00000006321) #12	Hoxa6 (ENSDORG00000006319) #13	Hoxa5 (ENSDORG00000025053) #14	Hoxa3 (ENSDORG00000027678) #16	Hoxa4 (ENSDORG00000006316) #15	Hoxa2 (ENSDORG00000006312) #17	Hoxa1 (ENSDORG00000006311) #18	Skap2 (ENSDORG00000009682) #19	Snx10 (ENSDORG00000028812) #20	ENSDORG00000005487 #21	Hnrnpa2b1 (ENSDORG00000005482) #22	Nfe2l3 (ENSDORG00000027950) #23	Npvf (ENSDORG00000027438) #24	4921507P07Rik (ENSDORG00000004102) #25	Cycs (ENSDORG00000029787) #26	Osbpl3 (ENSDORG00000011217) #27	ENSDORG00000027677 #27	Gsdme (ENSDORG00000004130) #28	Pals2 (ENSDORG00000004129) #29	Npy (ENSDORG00000002630) #30	Stk31 (ENSDORG00000016315) #31	Fam221a (ENSDORG00000028229) #32	Ccdc126 (ENSDORG00000029920) #33	ENSDORG00000028485	Tra2a (ENSDORG00000009361) #34	ENSDORG00000024592
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000162322 #8	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b.m.a #33	ENSGT00940000157167.n #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Eurasian red squirrel	MODERN SPECIES	17	HOXA13 (ENSSVLG00005012374) #8	ENSSVLG00005012350	HOXA11 (ENSSVLG00005012306) #9	HOXA10 (ENSSVLG00005012252) #10	HOXA9 (ENSSVLG00005012091) #11	HOXA7 (ENSSVLG00005012041) #12	HOXA6 (ENSSVLG00005012001) #13	HOXA5 (ENSSVLG00005011967) #14	HOXA4 (ENSSVLG00005011927) #15	HOXA3 (ENSSVLG00005011881) #16	HOXA1 (ENSSVLG00005011664) #18	ENSSVLG00005011503 #19	SNX10 (ENSSVLG00005011242) #20	ENSSVLG00005011185	CBX3 (ENSSVLG00005011150) #21	ENSSVLG00005011063 #22	NFE2L3 (ENSSVLG00005021592) #23	ENSSVLG00005021555	ENSSVLG00005021514	ENSSVLG00005021470	ENSSVLG00005021453	ENSSVLG00005021443	NPVF (ENSSVLG00005021397) #24	ENSSVLG00005021309 #25	ENSSVLG00005021199 #25	ENSSVLG00005021155 #26	OSBPL3 (ENSSVLG00005020998) #27	GSDME (ENSSVLG00005020913) #28	PALS2 (ENSSVLG00005020860) #29	NPY (ENSSVLG00005020816) #30	ENSSVLG00005020771
Marmotini	ANCESTRAL SPECIES	37	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000154150.gd.a	ENSGT00940000153470.a.a.a.b.m.a #33	ENSGT00940000157167.n #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Marmotini_b	ANCESTRAL SPECIES	26	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000154150.gd.a	ENSGT00940000153470.a.a.a.b.m.a #33	ENSGT00940000154530.w	ENSGT01030000235027	ENSGT00940000157167.n #34
Squirrel	MODERN SPECIES	78	EVX1 (ENSSTOG00000025642) #7	HOXA13 (ENSSTOG00000029157) #8	HOXA11 (ENSSTOG00000022674) #9	ENSSTOG00000021212	HOXA9 (ENSSTOG00000028613) #11	HOXA7 (ENSSTOG00000011208) #12	HOXA6 (ENSSTOG00000022675) #13	HOXA5 (ENSSTOG00000011206) #14	ENSSTOG00000024606 #15	HOXA3 (ENSSTOG00000021230) #16	HOXA2 (ENSSTOG00000016362) #17	HOXA1 (ENSSTOG00000024209) #18	SKAP2 (ENSSTOG00000021247) #19	SNX10 (ENSSTOG00000024131) #20	CBX3 (ENSSTOG00000006223) #21	ENSSTOG00000006202 #22	NFE2L3 (ENSSTOG00000014758) #23	NPVF (ENSSTOG00000008873) #24	C7orf31 (ENSSTOG00000008859) #25	OSBPL3 (ENSSTOG00000001755) #27	ENSSTOG00000014905 #28	PALS2 (ENSSTOG00000001908) #29	NPY (ENSSTOG00000020410) #30	ENSSTOG00000021917	ENSSTOG00000033576	STK31 (ENSSTOG00000003577) #31	ENSSTOG00000027960	ENSSTOG00000014113 #32	ENSSTOG00000020371	ENSSTOG00000029732 #32	CCDC126 (ENSSTOG00000021255) #33
Arctic ground squirrel	MODERN SPECIES	223	EVX1 (ENSUPAG00010017335) #7	HOXA13 (ENSUPAG00010017357) #8	HOXA11 (ENSUPAG00010017374) #9	ENSUPAG00010017375	HOXA9 (ENSUPAG00010017383) #11	HOXA7 (ENSUPAG00010017387) #12	HOXA6 (ENSUPAG00010017390) #13	HOXA5 (ENSUPAG00010017397) #14	HOXA4 (ENSUPAG00010017400) #15	HOXA3 (ENSUPAG00010017403) #16	HOXA2 (ENSUPAG00010017405) #17	HOXA1 (ENSUPAG00010017428) #18	SKAP2 (ENSUPAG00010017432) #19	SNX10 (ENSUPAG00010017455) #20	ENSUPAG00010017469 ##21	ENSUPAG00010017471 #22	ENSUPAG00010017632 #23	ENSUPAG00010017638 #23	ENSUPAG00010017645	NPVF (ENSUPAG00010017650) #24	C7orf31 (ENSUPAG00010017656) #25	ENSUPAG00010017667 #26	OSBPL3 (ENSUPAG00010017676) #27	GSDME (ENSUPAG00010017948) #28	PALS2 (ENSUPAG00010017963) #29	NPY (ENSUPAG00010018066) #30	STK31 (ENSUPAG00010018074) #31	ENSUPAG00010018164
Alpin marmot	MODERN SPECIES	26	HOXA13 (ENSMMMG00000006593) #8	HOXA11 (ENSMMMG00000006566) #9	ENSMMMG00000006561	HOXA9 (ENSMMMG00000006550) #11	HOXA7 (ENSMMMG00000006545) #12	HOXA6 (ENSMMMG00000006535) #13	HOXA5 (ENSMMMG00000006523) #14	ENSMMMG00000006511 #15	HOXA3 (ENSMMMG00000006503) #16	HOXA2 (ENSMMMG00000006490) #17	HOXA1 (ENSMMMG00000006456) #18	ENSMMMG00000006435	ENSMMMG00000006429 #19	SNX10 (ENSMMMG00000006398) #20	ENSMMMG00000006360 #21	ENSMMMG00000006197 #22	ENSMMMG00000006190 #23	NPVF (ENSMMMG00000006151) #24	C7orf31 (ENSMMMG00000006134) #25	ENSMMMG00000006125 ##26	OSBPL3 (ENSMMMG00000005837) #27	GSDME (ENSMMMG00000005813) #28	PALS2 (ENSMMMG00000005665) #29	NPY (ENSMMMG00000005649) #30	ENSMMMG00000005635	STK31 (ENSMMMG00000005447) #31	ENSMMMG00000005429 #32	ENSMMMG00000005362	ENSMMMG00000005357 #33	TRA2A (ENSMMMG00000005330) #34	IGF2BP3 (ENSMMMG00000005303) #35
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.f ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Hystricomorpha_a	ANCESTRAL SPECIES	41	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.f ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Guinea pig	MODERN SPECIES	44	EVX1 (ENSCPOG00000011370) #7	HOXA13 (ENSCPOG00000033640) #8	HOXA11 (ENSCPOG00000039723) #9	ENSCPOG00000031122	HOXA9 (ENSCPOG00000011365) #11	HOXA6 (ENSCPOG00000032757) #13	HOXA5 (ENSCPOG00000035800) #14	ENSCPOG00000032985 #15	HOXA3 (ENSCPOG00000030159) #16	HOXA2 (ENSCPOG00000034959) #17	HOXA1 (ENSCPOG00000037658) #18	SKAP2 (ENSCPOG00000000258) #19	ENSCPOG00000037875	SNX10 (ENSCPOG00000006831) #20	CBX3 (ENSCPOG00000015168) #21	HNRNPA2B1 (ENSCPOG00000036630) #22	NFE2L3 (ENSCPOG00000037483) #23	NPVF (ENSCPOG00000013784) #24	C7orf31 (ENSCPOG00000013779) #25	ENSCPOG00000038520 ##26	OSBPL3 (ENSCPOG00000007017) #27	GSDME (ENSCPOG00000015567) #28	PALS2 (ENSCPOG00000015565) #29	NPY (ENSCPOG00000026763) #30	STK31 (ENSCPOG00000032654) #31	FAM221A (ENSCPOG00000010187) #32	CCDC126 (ENSCPOG00000035540) #33	ENSCPOG00000035207	TRA2A (ENSCPOG00000010739) #34	IGF2BP3 (ENSCPOG00000015070) #35	MALSU1 (ENSCPOG00000015067) #36
Hystricomorpha_b	ANCESTRAL SPECIES	39	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Long-tailed chinchilla	MODERN SPECIES	117	EVX1 (ENSCLAG00000010646) #7	HOXA13 (ENSCLAG00000010361) #8	HOXA11 (ENSCLAG00000009905) #9	HOXA10 (ENSCLAG00000015066) #10	HOXA9 (ENSCLAG00000010294) #11	HOXA7 (ENSCLAG00000008671) #12	HOXA6 (ENSCLAG00000006012) #13	HOXA5 (ENSCLAG00000004908) #14	ENSCLAG00000008251 #15	HOXA3 (ENSCLAG00000006878) #16	HOXA2 (ENSCLAG00000016180) #17	HOXA1 (ENSCLAG00000014364) #18	SKAP2 (ENSCLAG00000006785) #19	ENSCLAG00000005337 #20	ENSCLAG00000012267 #21	ENSCLAG00000014058 #22	NFE2L3 (ENSCLAG00000005908) #23	C7orf31 (ENSCLAG00000005045) #25	ENSCLAG00000004661 ##26	OSBPL3 (ENSCLAG00000008517) #27	GSDME (ENSCLAG00000013195) #28	PALS2 (ENSCLAG00000006677) #29	NPY (ENSCLAG00000004780) #30	STK31 (ENSCLAG00000006727) #31	FAM221A (ENSCLAG00000007737) #32	CCDC126 (ENSCLAG00000006880) #33	TRA2A (ENSCLAG00000007917) #34	IGF2BP3 (ENSCLAG00000009835) #35	MALSU1 (ENSCLAG00000008469) #36	GPNMB (ENSCLAG00000004706) #37	NUP42 (ENSCLAG00000007547)
Degu	DUPLICATION
Degu	MODERN SPECIES	445																ENSODEG00000000652 #22
Degu	MODERN SPECIES	56	ENSODEG00000009794 #10	ENSODEG00000009545	HOXA9 (ENSODEG00000009347) #11	HOXA7 (ENSODEG00000008762) #12	HOXA6 (ENSODEG00000007928) #13	HOXA5 (ENSODEG00000007850) #14	ENSODEG00000007568	HOXA3 (ENSODEG00000009161) #16	HOXA2 (ENSODEG00000009002) #17	HOXA1 (ENSODEG00000008589) #18	ENSODEG00000009507	SKAP2 (ENSODEG00000008150) #19	ENSODEG00000019395	SNX10 (ENSODEG00000007480) #20	ENSODEG00000008405 #21	ENSODEG00000008757 #22	NFE2L3 (ENSODEG00000007181) #23	ENSODEG00000007532	ENSODEG00000007198	NPVF (ENSODEG00000009144) #24	ENSODEG00000011380	C7orf31 (ENSODEG00000008263) #25	ENSODEG00000007611 #26	OSBPL3 (ENSODEG00000008161) #27	ENSODEG00000007712 #28	PALS2 (ENSODEG00000007676) #29	NPY (ENSODEG00000008296) #30	ENSODEG00000007836	ENSODEG00000019512	ENSODEG00000019686	ENSODEG00000009491
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	17	CYREN (ENSHGLG00000049991)	WDR91 (ENSHGLG00000004516)	STRA8 (ENSHGLG00000005005)	ENSHGLG00000006398	CNOT4 (ENSHGLG00000011533)	NUP205 (ENSHGLG00000016088)	STMP1 (ENSHGLG00000046204)	SLC13A4 (ENSHGLG00000004963)	FAM180A (ENSHGLG00000005791)	MTPN (ENSHGLG00000042267)	ENSHGLG00000035315	ENSHGLG00000037486	ENSHGLG00000008188	CHRM2 (ENSHGLG00000009212)	ENSHGLG00000009445	ENSHGLG00000010704 #22	PTN (ENSHGLG00000035687)	DGKI (ENSHGLG00000012937)	CREB3L2 (ENSHGLG00000018828)	AKR1D1 (ENSHGLG00000014279)	ENSHGLG00000043652	TRIM24 (ENSHGLG00000005195)	SVOPL (ENSHGLG00000005360)	ATP6V0A4 (ENSHGLG00000006131)	KIAA1549 (ENSHGLG00000009787)	ENSHGLG00000005299	ZC3HAV1 (ENSHGLG00000006700)	TTC26 (ENSHGLG00000009066)	ENSHGLG00000047005	UBN2 (ENSHGLG00000005428)	FMC1 (ENSHGLG00000050501)
Naked mole-rat female	MODERN SPECIES	5	HOXA13 (ENSHGLG00000039960) #8	HOXA11 (ENSHGLG00000009266) #9	HOXA10 (ENSHGLG00000050027) #10	HOXA9 (ENSHGLG00000045326) #11	ENSHGLG00000043027 #12	HOXA5 (ENSHGLG00000016863) #14	HOXA4 (ENSHGLG00000048807) #15	HOXA3 (ENSHGLG00000046038) #16	HOXA2 (ENSHGLG00000017804) #17	HOXA1 (ENSHGLG00000018117) #18	ENSHGLG00000036434	ENSHGLG00000045030	SKAP2 (ENSHGLG00000042970) #19	ENSHGLG00000050650 #20	ENSHGLG00000014772 #21	ENSHGLG00000015396 #22	NFE2L3 (ENSHGLG00000017200) #23	NPVF (ENSHGLG00000017985) #24	ENSHGLG00000041627	ENSHGLG00000016657 #25	ENSHGLG00000010213 ##26	ENSHGLG00000005743	ENSHGLG00000006403	ENSHGLG00000007144	ENSHGLG00000002212	ENSHGLG00000049918	ENSHGLG00000042213	POT1 (ENSHGLG00000003954)	GPR37 (ENSHGLG00000032710)	ENSHGLG00000036156	TMEM229A (ENSHGLG00000039371)
Lagomorpha	ANCESTRAL SPECIES	39	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.e.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Rabbit	MODERN SPECIES	1	EVX1 (ENSOCUG00000015159) #7	HOXA13 (ENSOCUG00000024694) #8	HOXA11 (ENSOCUG00000015170) #9	HOXA10 (ENSOCUG00000029439) #10	HOXA9 (ENSOCUG00000020585) #11	HOXA7 (ENSOCUG00000015183) #12	HOXA5 (ENSOCUG00000029580) #14	ENSOCUG00000015190 #15	HOXA3 (ENSOCUG00000027405) #16	HOXA2 (ENSOCUG00000015205) #17	HOXA1 (ENSOCUG00000015215) #18	ENSOCUG00000022860	SKAP2 (ENSOCUG00000011330) #19	SNX10 (ENSOCUG00000004744) #20	ENSOCUG00000002464 #21	ENSOCUG00000026859 #22	NFE2L3 (ENSOCUG00000003140) #23	ENSOCUG00000030043	NPVF (ENSOCUG00000009530) #24	C7orf31 (ENSOCUG00000009523) #25	ENSOCUG00000025605 ##26	OSBPL3 (ENSOCUG00000007990) #27	GSDME (ENSOCUG00000006691) #28	PALS2 (ENSOCUG00000014659) #29	NPY (ENSOCUG00000010761) #30	STK31 (ENSOCUG00000004738) #31	CCDC126 (ENSOCUG00000012389) #33	ENSOCUG00000037847	TRA2A (ENSOCUG00000024139) #34	IGF2BP3 (ENSOCUG00000008976) #35	MALSU1 (ENSOCUG00000008972) #36
Primates	ANCESTRAL SPECIES	12	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Tarsier	MODERN SPECIES	5236													SKAP2 (ENSTSYG00000002308) #19	SNX10 (ENSTSYG00000008160) #20	CBX3 (ENSTSYG00000037013) #21	HNRNPA2B1 (ENSTSYG00000008124) #22	ENSTSYG00000037450
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00910000146860.b	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00910000146860.b.b	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000154947.f.b	ENSGT00390000015089.d	ENSGT00910000147494
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b.c #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000154947.f.b	ENSGT00390000015089.d	ENSGT00910000147494	ENSGT00940000157167 #34
Gibbon	MODERN SPECIES	7	HOXA11 (ENSNLEG00000014994) #9	ENSNLEG00000018316	HOXA9 (ENSNLEG00000014992) #11	ENSNLEG00000032135 #12	HOXA6 (ENSNLEG00000014990) #13	HOXA4 (ENSNLEG00000014988) #15	HOXA3 (ENSNLEG00000014980) #16	HOXA2 (ENSNLEG00000014978) #17	HOXA1 (ENSNLEG00000014975) #18	ENSNLEG00000035199	SKAP2 (ENSNLEG00000014950) #19	ENSNLEG00000035004	ENSNLEG00000031144	SNX10 (ENSNLEG00000014938) #20	ENSNLEG00000014931 #21	HNRNPA2B1 (ENSNLEG00000014918) #22	NFE2L3 (ENSNLEG00000027718) #23	NPVF (ENSNLEG00000014908) #24	CYCS (ENSNLEG00000014901) ##26	OSBPL3 (ENSNLEG00000014856) #27	GSDME (ENSNLEG00000014837) #28	PALS2 (ENSNLEG00000014829) #29	NPY (ENSNLEG00000014826) #30	STK31 (ENSNLEG00000014801) #31	FAM221A (ENSNLEG00000014799) #32	CCDC126 (ENSNLEG00000014797) #33	ENSNLEG00000031039	TRA2A (ENSNLEG00000014794) #34	IGF2BP3 (ENSNLEG00000014780) #35	MALSU1 (ENSNLEG00000033575) #36	GPNMB (ENSNLEG00000014758) #37
Hominidae	ANCESTRAL SPECIES	11	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b.c #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000154947.f.b	ENSGT00390000015089.d	ENSGT00910000147494	ENSGT00940000157167 #34
Orangutan	MODERN SPECIES	20	HOXA11 (ENSPPYG00000017698) #9	ENSPPYG00000039324	HOXA9 (ENSPPYG00000032755) #11	HOXA7 (ENSPPYG00000017701) #12	HOXA6 (ENSPPYG00000017702) #13	HOXA5 (ENSPPYG00000017703) #14	HOXA4 (ENSPPYG00000017704) #15	ENSPPYG00000017705	HOXA3 (ENSPPYG00000017706) #16	HOXA2 (ENSPPYG00000017707) #17	HOXA1 (ENSPPYG00000029903) #18	SKAP2 (ENSPPYG00000017710) #19	ENSPPYG00000017711	SNX10 (ENSPPYG00000017713) #20	CBX3 (ENSPPYG00000017714) #21	HNRNPA2B1 (ENSPPYG00000017715) #22	NFE2L3 (ENSPPYG00000017716) #23	NPVF (ENSPPYG00000017717) #24	C7orf31 (ENSPPYG00000017718) #25	CYCS (ENSPPYG00000039115) ##26	OSBPL3 (ENSPPYG00000017720) #27	GSDME (ENSPPYG00000017721) #28	PALS2 (ENSPPYG00000017722) #29	NPY (ENSPPYG00000017723) #30	STK31 (ENSPPYG00000017724) #31	FAM221A (ENSPPYG00000017725) #32	CCDC126 (ENSPPYG00000017726) #33	ENSPPYG00000036051	ENSPPYG00000017728 #34	ENSPPYG00000038254	IGF2BP3 (ENSPPYG00000017730) #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	25	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b.c #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000154947.f.b	ENSGT00390000015089.d	ENSGT00910000147494	ENSGT00940000157167 #34
Gorilla	MODERN SPECIES	20	HOXA7 (ENSGGOG00000002220) #12	HOXA6 (ENSGGOG00000002218) #13	HOXA5 (ENSGGOG00000002217) #14	ENSGGOG00000002215 #15	HOXA3 (ENSGGOG00000002213) #16	HOXA2 (ENSGGOG00000002211) #17	HOXA1 (ENSGGOG00000002209) #18	ENSGGOG00000027198	ENSGGOG00000012668	ENSGGOG00000027139	SKAP2 (ENSGGOG00000002146) #19	ENSGGOG00000027200	ENSGGOG00000011876	SNX10 (ENSGGOG00000003419) #20	CBX3 (ENSGGOG00000025853) #21	HNRNPA2B1 (ENSGGOG00000017072) #22	NFE2L3 (ENSGGOG00000025881) #23	NPVF (ENSGGOG00000011997) #24	C7orf31 (ENSGGOG00000016477) #25	CYCS (ENSGGOG00000024588) ##26	OSBPL3 (ENSGGOG00000010510) #27	GSDME (ENSGGOG00000005163) #28	PALS2 (ENSGGOG00000005158) #29	NPY (ENSGGOG00000028114) #30	ENSGGOG00000034995 #31	FAM221A (ENSGGOG00000001295) #32	ENSGGOG00000039812	CCDC126 (ENSGGOG00000026042) #33	TRA2A (ENSGGOG00000009053) #34	ENSGGOG00000039579	IGF2BP3 (ENSGGOG00000010286) #35
Homo/Pan group	ANCESTRAL SPECIES	24	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b.c #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000154947.f.b	ENSGT00390000015089.d	ENSGT00910000147494	ENSGT00940000157167 #34
Pan	ANCESTRAL SPECIES	25	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT01030000234542.b.a.a.a.b.a.b.c.a.b	ENSGT00940000153299.c.b.a.b.a.a.a	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b.c #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000154947.f.b	ENSGT00390000015089.d	ENSGT00910000147494	ENSGT00940000157167 #34
Bonobo	MODERN SPECIES	20	HOXA7 (ENSPPAG00000034362) #12	HOXA6 (ENSPPAG00000039975) #13	HOXA5 (ENSPPAG00000044047) #14	ENSPPAG00000043774 #15	HOXA3 (ENSPPAG00000032603) #16	HOXA2 (ENSPPAG00000035694) #17	HOXA1 (ENSPPAG00000000155) #18	ENSPPAG00000038834	ENSPPAG00000000147	ENSPPAG00000033310	SKAP2 (ENSPPAG00000030605) #19	ENSPPAG00000028025	ENSPPAG00000027824	SNX10 (ENSPPAG00000038529) #20	CBX3 (ENSPPAG00000040392) #21	HNRNPA2B1 (ENSPPAG00000037520) #22	NFE2L3 (ENSPPAG00000027421) #23	NPVF (ENSPPAG00000010942) #24	C7orf31 (ENSPPAG00000043484) #25	CYCS (ENSPPAG00000017160) ##26	OSBPL3 (ENSPPAG00000034347) #27	GSDME (ENSPPAG00000020017) #28	PALS2 (ENSPPAG00000036410) #29	NPY (ENSPPAG00000016967) #30	STK31 (ENSPPAG00000041589) #31	FAM221A (ENSPPAG00000041265) #32	CCDC126 (ENSPPAG00000023938) #33	ENSPPAG00000032686	ENSPPAG00000032195	TRA2A (ENSPPAG00000034382) #34	ENSPPAG00000032190
Chimpanzee	MODERN SPECIES	20	HOXA7 (ENSPTRG00000019017) #12	HOXA6 (ENSPTRG00000039535) #13	ENSPTRG00000019015 #14	HOXA4 (ENSPTRG00000023597) #15	HOXA3 (ENSPTRG00000019012) #16	HOXA2 (ENSPTRG00000019011) #17	HOXA1 (ENSPTRG00000019010) #18	ENSPTRG00000049011	ENSPTRG00000044997	ENSPTRG00000049392	SKAP2 (ENSPTRG00000019007) #19	ENSPTRG00000039177	ENSPTRG00000019006	SNX10 (ENSPTRG00000019004) #20	CBX3 (ENSPTRG00000019003) ##21	HNRNPA2B1 (ENSPTRG00000019002) #22	NFE2L3 (ENSPTRG00000019000) #23	NPVF (ENSPTRG00000018998) #24	C7H7orf31 (ENSPTRG00000018997) #25	CYCS (ENSPTRG00000018996) ##26	OSBPL3 (ENSPTRG00000018995) #27	GSDME (ENSPTRG00000018994) #28	PALS2 (ENSPTRG00000018993) #29	NPY (ENSPTRG00000018992) #30	ENSPTRG00000050945	STK31 (ENSPTRG00000018991) #31	FAM221A (ENSPTRG00000018990) #32	CCDC126 (ENSPTRG00000018989) #33	ENSPTRG00000043234	ENSPTRG00000046014	ENSPTRG00000046677
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a.d.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00910000146860.b.b	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a.d.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00910000146860.b.b	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Vervet Monkey	MODERN SPECIES	13	HOXA13 (ENSCSAG00000014315) #8	HOXA11 (ENSCSAG00000014310) #9	ENSCSAG00000014302	HOXA9 (ENSCSAG00000014297) #11	HOXA7 (ENSCSAG00000014292) #12	HOXA6 (ENSCSAG00000014287) #13	HOXA5 (ENSCSAG00000014278) #14	HOXA4 (ENSCSAG00000014273) #15	HOXA3 (ENSCSAG00000014267) #16	HOXA2 (ENSCSAG00000014262) #17	HOXA1 (ENSCSAG00000014256) #18	SKAP2 (ENSCSAG00000014230) #19	ENSCSAG00000014193	SNX10 (ENSCSAG00000014190) #20	CBX3 (ENSCSAG00000014185) #21	ENSCSAG00000014175 #22	NFE2L3 (ENSCSAG00000014168) #23	NPVF (ENSCSAG00000014160) #24	C7orf31 (ENSCSAG00000014149) #25	OSBPL3 (ENSCSAG00000014122) #27	GSDME (ENSCSAG00000014114) #28	PALS2 (ENSCSAG00000014108) #29	NPY (ENSCSAG00000014088) #30	STK31 (ENSCSAG00000014075) #31	FAM221A (ENSCSAG00000014066) #32	CCDC126 (ENSCSAG00000014057) #33	TRA2A (ENSCSAG00000014051) #34	IGF2BP3 (ENSCSAG00000014023) #35	MALSU1 (ENSCSAG00000013969) #36	GPNMB (ENSCSAG00000013965) #37	NUP42 (ENSCSAG00000013956)
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00940000153395.a.rb.b.b.a	ENSGT00940000167156	ENSGT01030000234542.b.a.a.a.b.a.b.c.a	ENSGT00940000153299.c.b.a.b.a.a.a	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00940000153593.c.b.d.b	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a.d.b.b.a.a.a ##26	ENSGT00390000009405.b.c.a.a.d.b.b.a.a.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00910000146860.b.b	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000154947.f.b
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00940000153395.a.rb.b.b.a	ENSGT00940000167156	ENSGT01030000234542.b.a.a.a.b.a.b.c.a	ENSGT00940000153299.c.b.a.b.a.a.a	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00940000153593.c.b.d.b	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a.d.b.b.a.a.a ##26	ENSGT00390000009405.b.c.a.a.d.b.b.a.a.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000154947.f.b	ENSGT00390000015089.d
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00940000153395.a.rb.b.b.a	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.c.a.a.d.b.b.a.a.a ##26	ENSGT00980000199842.C.a.b	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000153095.g.b.a.b.n.a	ENSGT00940000154957.B #35
Crab-eating macaque	MODERN SPECIES	13	HOXA13 (ENSMFAG00000039716) #8	HOXA11 (ENSMFAG00000044467) #9	HOXA10 (ENSMFAG00000000953) #10	HOXA9 (ENSMFAG00000041407) #11	HOXA7 (ENSMFAG00000058004) #12	HOXA6 (ENSMFAG00000030075) #13	HOXA5 (ENSMFAG00000061184) #14	HOXA4 (ENSMFAG00000038265) #15	HOXA3 (ENSMFAG00000053957) #16	HOXA2 (ENSMFAG00000040635) #17	HOXA1 (ENSMFAG00000034381) #18	ENSMFAG00000025170	SKAP2 (ENSMFAG00000041066) #19	SNX10 (ENSMFAG00000000672) #20	CBX3 (ENSMFAG00000000399) #21	HNRNPA2B1 (ENSMFAG00000002536) #22	NFE2L3 (ENSMFAG00000031568) #23	NPVF (ENSMFAG00000033164) #24	C7orf31 (ENSMFAG00000043369) #25	ENSMFAG00000050012 ##26	ENSMFAG00000047292	OSBPL3 (ENSMFAG00000045859) #27	GSDME (ENSMFAG00000045660) #28	PALS2 (ENSMFAG00000024129) #29	NPY (ENSMFAG00000043708) #30	STK31 (ENSMFAG00000002623) #31	ENSMFAG00000056826	ENSMFAG00000048363	CCDC126 (ENSMFAG00000032312) #33	ENSMFAG00000058711	TRA2A (ENSMFAG00000043211) #34
Pig-tailed macaque	MODERN SPECIES	534	HOXA7 (ENSMNEG00000013840) #12	HOXA6 (ENSMNEG00000013443) #13	HOXA5 (ENSMNEG00000041820) #14	HOXA4 (ENSMNEG00000038108) #15	HOXA3 (ENSMNEG00000045278) #16	HOXA2 (ENSMNEG00000028148) #17	HOXA1 (ENSMNEG00000043463) #18	ENSMNEG00000027963	ENSMNEG00000040022	ENSMNEG00000045177	SKAP2 (ENSMNEG00000029161) #19	ENSMNEG00000001360	ENSMNEG00000027968	SNX10 (ENSMNEG00000032503) #20	ENSMNEG00000039531 ##21	HNRNPA2B1 (ENSMNEG00000029148) #22	NFE2L3 (ENSMNEG00000040959) #23	ENSMNEG00000011490	NPVF (ENSMNEG00000044212) #24	C7orf31 (ENSMNEG00000040993) #25	ENSMNEG00000040882 ##26	OSBPL3 (ENSMNEG00000037365) #27	GSDME (ENSMNEG00000038751) #28	PALS2 (ENSMNEG00000017368) #29	NPY (ENSMNEG00000037164) #30	STK31 (ENSMNEG00000030763) #31	FAM221A (ENSMNEG00000040337) #32	CCDC126 (ENSMNEG00000041538) #33	ENSMNEG00000043436	ENSMNEG00000035994	TRA2A (ENSMNEG00000040670) #34
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00940000153395.a.rb.b.b.a	ENSGT00940000167156	ENSGT01030000234542.b.a.a.a.b.a.b.c.a	ENSGT00940000153299.c.b.a.b.a.a.a	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00940000153593.c.b.d.b	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00910000146860.b.b	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000154947.f.b	ENSGT00390000015089.d	ENSGT00940000157167 #34
Olive baboon	MODERN SPECIES	14	HOXA13 (ENSPANG00000030952) #8	HOXA11 (ENSPANG00000026298) #9	HOXA10 (ENSPANG00000021024)	HOXA9 (ENSPANG00000025913) #11	HOXA7 (ENSPANG00000029246) #12	HOXA6 (ENSPANG00000013799) #13	HOXA5 (ENSPANG00000009594) #14	HOXA4 (ENSPANG00000045376) #15	HOXA3 (ENSPANG00000025912) #16	HOXA2 (ENSPANG00000015067) #17	HOXA1 (ENSPANG00000003403) #18	MAD2L1 (ENSPANG00000004063)	SKAP2 (ENSPANG00000006185) #19	SNX10 (ENSPANG00000006089) #20	ENSPANG00000031037 #21	HNRNPA2B1 (ENSPANG00000021598) #22	NFE2L3 (ENSPANG00000013687) #23	NPVF (ENSPANG00000008672) #24	C7orf31 (ENSPANG00000045080) #25	ENSPANG00000050044 ##26	ENSPANG00000041877	ENSPANG00000047289	ENSPANG00000045545	OSBPL3 (ENSPANG00000019047) #27	GSDME (ENSPANG00000008671) #28	PALS2 (ENSPANG00000014542) #29	ENSPANG00000037890	NPY (ENSPANG00000049695) #30	ENSPANG00000041561	ENSPANG00000042645	STK31 (ENSPANG00000024764) #31
Cercopithecinae_d	ANCESTRAL SPECIES	10	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00940000153395.a.rb.b.b.a	ENSGT00940000167156	ENSGT01030000234542.b.a.a.a.b.a.b.c.a	ENSGT00940000153299.c.b.a.b.a.a.a	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00940000153593.c.b.d.b	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00910000146860.b.b	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000154947.f.b	ENSGT00390000015089.d	ENSGT00940000157167 #34
Sooty mangabey	MODERN SPECIES	98	HOXA6 (ENSCATG00000035243) #13	HOXA5 (ENSCATG00000043876) #14	HOXA7 (ENSCATG00000032186) #12	HOXA4 (ENSCATG00000029977) #15	HOXA3 (ENSCATG00000035121) #16	HOXA2 (ENSCATG00000033672) #17	HOXA1 (ENSCATG00000034436) #18	ENSCATG00000036904	ENSCATG00000033949	ENSCATG00000012253	SKAP2 (ENSCATG00000015604) #19	ENSCATG00000044879	ENSCATG00000044832	SNX10 (ENSCATG00000044201) #20	ENSCATG00000007882 #21	HNRNPA2B1 (ENSCATG00000033325) #22	NFE2L3 (ENSCATG00000040425) #23	ENSCATG00000022058	NPVF (ENSCATG00000042042) #24	C7orf31 (ENSCATG00000010408) #25	OSBPL3 (ENSCATG00000043751) #27	GSDME (ENSCATG00000037274) #28	PALS2 (ENSCATG00000036634) #29	NPY (ENSCATG00000041237) #30	STK31 (ENSCATG00000021541) #31	FAM221A (ENSCATG00000044412) #32	ENSCATG00000040316	CCDC126 (ENSCATG00000033060) #33	ENSCATG00000040046	ENSCATG00000043573	TRA2A (ENSCATG00000041219) #34
Drill	MODERN SPECIES	322	HOXA9 (ENSMLEG00000044371) #11	HOXA7 (ENSMLEG00000043725) #12	HOXA6 (ENSMLEG00000043981) #13	HOXA5 (ENSMLEG00000032881) #14	HOXA3 (ENSMLEG00000039968) #16	ENSMLEG00000033218 #15	HOXA2 (ENSMLEG00000028127) #17	HOXA1 (ENSMLEG00000035357) #18	ENSMLEG00000029093	ENSMLEG00000044382	SKAP2 (ENSMLEG00000044388) #19	ENSMLEG00000041406	ENSMLEG00000044195	SNX10 (ENSMLEG00000017869) #20	CBX3 (ENSMLEG00000043394) #21	HNRNPA2B1 (ENSMLEG00000040848) #22	NFE2L3 (ENSMLEG00000030644) #23
Rhinopithecus	ANCESTRAL SPECIES	122									ENSGT00940000159856	ENSGT00390000006009.a.a.a	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000160741	ENSGT00390000004832.c.b	ENSGT00940000156193	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000001360	ENSGT00940000155420.b	ENSGT00390000014787	ENSGT00390000009030	ENSGT00390000006762	ENSGT00940000155932	ENSGT00940000155585	ENSGT00390000000378.d.a	ENSGT00940000156009.A	ENSGT00510000047471	ENSGT00940000160488	ENSGT00940000161343	ENSGT00950000183203.d.g	ENSGT00390000018559.t
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	3092											SKAP2 (ENSRROG00000039303) #19	ENSRROG00000034782	ENSRROG00000038765	SNX10 (ENSRROG00000034286) #20	CBX3 (ENSRROG00000035467) #21	ENSRROG00000020443 #22	NFE2L3 (ENSRROG00000031247) #23
Golden snub-nosed monkey	MODERN SPECIES	2234									ANKFN1 (ENSRROG00000036166)	NOG (ENSRROG00000017173)	C17orf67 (ENSRROG00000040355)	DGKE (ENSRROG00000035418)	TRIM25 (ENSRROG00000036932)	COIL (ENSRROG00000014024)	SCPEP1 (ENSRROG00000022333)	ENSRROG00000008368 #22	AKAP1 (ENSRROG00000010936)	ENSRROG00000034421
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	1813										ENSRBIG00000024934	ENSRBIG00000028714 #19	ENSRBIG00000038300	ENSRBIG00000041502	ENSRBIG00000030128 #20	ENSRBIG00000029041 ##21	ENSRBIG00000015923 #22	NFE2L3 (ENSRBIG00000044283) #23
Black snub-nosed monkey	MODERN SPECIES	442										ANKFN1 (ENSRBIG00000038242)	C17orf67 (ENSRBIG00000034669)	DGKE (ENSRBIG00000040729)	TRIM25 (ENSRBIG00000042817)	COIL (ENSRBIG00000034489)	SCPEP1 (ENSRBIG00000000764)	ENSRBIG00000039719 #22	AKAP1 (ENSRBIG00000033113)
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00910000146860.b	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Cebidae	ANCESTRAL SPECIES	9	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00910000146860.b	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Cebidae_a	ANCESTRAL SPECIES	7	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT01090000260040.b.b.b.b.b	ENSGT00390000015236 #25	ENSGT00390000009405.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00910000146860.b	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000153566.a.h
Bolivian squirrel monkey	MODERN SPECIES	112	HOXA13 (ENSSBOG00000024071) #8	HOXA11 (ENSSBOG00000020434) #9	HOXA10 (ENSSBOG00000033844) #10	HOXA9 (ENSSBOG00000033572) #11	HOXA7 (ENSSBOG00000023282) #12	HOXA6 (ENSSBOG00000026859) #13	HOXA5 (ENSSBOG00000027127) #14	ENSSBOG00000026625 #15	HOXA3 (ENSSBOG00000031444) #16	HOXA2 (ENSSBOG00000024057) #17	HOXA1 (ENSSBOG00000022017) #18	ENSSBOG00000035175	SKAP2 (ENSSBOG00000022367) #19	SNX10 (ENSSBOG00000026009) #20	ENSSBOG00000029159 #21	HNRNPA2B1 (ENSSBOG00000005245) #22	NFE2L3 (ENSSBOG00000028975) #23	ENSSBOG00000028454	ENSSBOG00000027366	NPVF (ENSSBOG00000020608) #24	ENSSBOG00000027136	C7orf31 (ENSSBOG00000030318) #25	OSBPL3 (ENSSBOG00000031298) #27	GSDME (ENSSBOG00000023554) #28	PALS2 (ENSSBOG00000020815) #29	NPY (ENSSBOG00000023880) #30	ENSSBOG00000006781	STK31 (ENSSBOG00000033536) #31	FAM221A (ENSSBOG00000021284) #32	ENSSBOG00000032133	CCDC126 (ENSSBOG00000018628) #33
Capuchin	MODERN SPECIES	45	EVX1 (ENSCCAG00000030309) #7	HOXA13 (ENSCCAG00000028264) #8	HOXA11 (ENSCCAG00000035880) #9	HOXA10 (ENSCCAG00000034574) #10	HOXA9 (ENSCCAG00000029541) #11	HOXA7 (ENSCCAG00000024332) #12	HOXA6 (ENSCCAG00000010092) #13	HOXA5 (ENSCCAG00000029402) #14	HOXA4 (ENSCCAG00000027072) #15	HOXA3 (ENSCCAG00000023332) #16	HOXA2 (ENSCCAG00000027236) #17	HOXA1 (ENSCCAG00000023769) #18	SKAP2 (ENSCCAG00000034754) #19	SNX10 (ENSCCAG00000029733) #20	CBX3 (ENSCCAG00000027804) #21	HNRNPA2B1 (ENSCCAG00000029074) #22	NFE2L3 (ENSCCAG00000031243) #23	ENSCCAG00000022491	NPVF (ENSCCAG00000030493) #24	ENSCCAG00000020933	C7orf31 (ENSCCAG00000003818) #25	ENSCCAG00000026670 ##26	OSBPL3 (ENSCCAG00000037568) #27	GSDME (ENSCCAG00000026650) #28	PALS2 (ENSCCAG00000037294) #29	NPY (ENSCCAG00000031249) #30	STK31 (ENSCCAG00000027635) #31	FAM221A (ENSCCAG00000037127) #32	ENSCCAG00000026868	CCDC126 (ENSCCAG00000034455) #33	ENSCCAG00000023919
Marmoset	MODERN SPECIES	20	HOXA10 (ENSCJAG00000081224) #10	HOXA9 (ENSCJAG00000038531) #11	HOXA7 (ENSCJAG00000080800) #12	HOXA6 (ENSCJAG00000077854) #13	HOXA5 (ENSCJAG00000047690) #14	HOXA4 (ENSCJAG00000008058) #15	HOXA3 (ENSCJAG00000043202) #16	HOXA2 (ENSCJAG00000008032) #17	HOXA1 (ENSCJAG00000008024) #18	ENSCJAG00000080948	ENSCJAG00000074413	ENSCJAG00000072929	SKAP2 (ENSCJAG00000007979) #19	SNX10 (ENSCJAG00000060087) #20	CBX3 (ENSCJAG00000007952) ##21	HNRNPA2B1 (ENSCJAG00000007908) #22	NFE2L3 (ENSCJAG00000007897) #23	ENSCJAG00000087067	ENSCJAG00000075759	ENSCJAG00000084957	NPVF (ENSCJAG00000007888) #24	C7orf31 (ENSCJAG00000063137) #25	ENSCJAG00000074356 ##26	ENSCJAG00000071449	OSBPL3 (ENSCJAG00000007746) #27	GSDME (ENSCJAG00000007718) #28	PALS2 (ENSCJAG00000007689) #29	NPY (ENSCJAG00000078083) #30	STK31 (ENSCJAG00000007625) #31	FAM221A (ENSCJAG00000007603) #32	CCDC126 (ENSCJAG00000039115) #33
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	651	KIFBP (ENSANAG00000023947)	ENSANAG00000024391	ENSANAG00000038214	DDX21 (ENSANAG00000038109)	ENSANAG00000017521	DDX50 (ENSANAG00000017785)	STOX1 (ENSANAG00000025724)	CCAR1 (ENSANAG00000023002)	TET1 (ENSANAG00000028392)	SLC25A16 (ENSANAG00000020312)	DNA2 (ENSANAG00000037527)	RUFY2 (ENSANAG00000032945)	HNRNPH3 (ENSANAG00000024326)	PBLD (ENSANAG00000035799)	ATOH7 (ENSANAG00000019535)	ENSANAG00000020524 #22	MYPN (ENSANAG00000011534)	HERC4 (ENSANAG00000012094)	SIRT1 (ENSANAG00000035959)	DNAJC12 (ENSANAG00000032830)	CTNNA3 (ENSANAG00000017798)	LRRTM3 (ENSANAG00000037749)
Mas night monkey	MODERN SPECIES	442	HOXA13 (ENSANAG00000027275) #8	HOXA11 (ENSANAG00000023241) #9	HOXA10 (ENSANAG00000024989) #10	HOXA9 (ENSANAG00000027317) #11	HOXA7 (ENSANAG00000033107) #12	HOXA6 (ENSANAG00000021101) #13	HOXA5 (ENSANAG00000034612) #14	HOXA4 (ENSANAG00000036216) #15	HOXA3 (ENSANAG00000021432) #16	HOXA2 (ENSANAG00000025238) #17	HOXA1 (ENSANAG00000037615) #18	ENSANAG00000025984	SKAP2 (ENSANAG00000029886) #19	SNX10 (ENSANAG00000021914) #20	CBX3 (ENSANAG00000022611) #21	ENSANAG00000033016 #22	NFE2L3 (ENSANAG00000027774) #23	NPVF (ENSANAG00000035252) #24	C7orf31 (ENSANAG00000027077) #25	ENSANAG00000033583	ENSANAG00000028593 ##26	ENSANAG00000033111	OSBPL3 (ENSANAG00000028296) #27	ENSANAG00000021188	ENSANAG00000026482	GSDME (ENSANAG00000035451) #28	PALS2 (ENSANAG00000022814) #29	NPY (ENSANAG00000024297) #30	STK31 (ENSANAG00000029927) #31	FAM221A (ENSANAG00000025669) #32	ENSANAG00000030837
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007.c #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Bushbaby	MODERN SPECIES	143	EVX1 (ENSOGAG00000031221) #7	HOXA13 (ENSOGAG00000028983) #8	HOXA11 (ENSOGAG00000012389) #9	HOXA10 (ENSOGAG00000012385) #10	HOXA9 (ENSOGAG00000015000) #11	HOXA7 (ENSOGAG00000032482) #12	HOXA6 (ENSOGAG00000012384) #13	HOXA5 (ENSOGAG00000031153) #14	HOXA4 (ENSOGAG00000028670) #15	HOXA3 (ENSOGAG00000027664) #16	HOXA2 (ENSOGAG00000012372) #17	HOXA1 (ENSOGAG00000012370) #18	SKAP2 (ENSOGAG00000012366) #19	ENSOGAG00000004065 #20	ENSOGAG00000016583 ##21	ENSOGAG00000015353 #22	NFE2L3 (ENSOGAG00000015349) #23	C7orf31 (ENSOGAG00000015803) #25	OSBPL3 (ENSOGAG00000003401) #27	GSDME (ENSOGAG00000003400) #28	PALS2 (ENSOGAG00000003397) #29	NPY (ENSOGAG00000024572) #30	STK31 (ENSOGAG00000013559) #31	FAM221A (ENSOGAG00000013551) #32	CCDC126 (ENSOGAG00000024333) #33	TRA2A (ENSOGAG00000009733) #34	IGF2BP3 (ENSOGAG00000017159) #35	MALSU1 (ENSOGAG00000017157) #36	GPNMB (ENSOGAG00000017155) #37	NUP42 (ENSOGAG00000017153)	KLHL7 (ENSOGAG00000017098)
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007.c #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000004428.a.h.d.a.b	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167 #34	ENSGT00940000154957.B #35
Mouse lemur	MODERN SPECIES	2	EVX1 (ENSMICG00000031887) #7	HOXA13 (ENSMICG00000043155) #8	HOXA11 (ENSMICG00000033824) #9	HOXA10 (ENSMICG00000027113) #10	HOXA9 (ENSMICG00000045382) #11	HOXA7 (ENSMICG00000028330) #12	HOXA5 (ENSMICG00000046770) #14	ENSMICG00000046352	HOXA3 (ENSMICG00000030351) #16	HOXA2 (ENSMICG00000047950) #17	HOXA1 (ENSMICG00000041792) #18	ENSMICG00000030368	SKAP2 (ENSMICG00000000466) #19	SNX10 (ENSMICG00000036618) #20	CBX3 (ENSMICG00000033535) #21	ENSMICG00000030570 #22	NFE2L3 (ENSMICG00000032091) #23	NPVF (ENSMICG00000000759) #24	C7orf31 (ENSMICG00000000758) #25	ENSMICG00000045862 ##26	OSBPL3 (ENSMICG00000000756) #27	GSDME (ENSMICG00000000755) #28	PALS2 (ENSMICG00000004206) #29	ENSMICG00000046424	NPY (ENSMICG00000000511) #30	ENSMICG00000042222	STK31 (ENSMICG00000012021) #31	FAM221A (ENSMICG00000038246) #32	CCDC126 (ENSMICG00000044703) #33	ENSMICG00000046270	ENSMICG00000044121
Lemuriformes_a	ANCESTRAL SPECIES	66	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007.c #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.a.a.a.b.a.b.a.b.a #26	ENSGT00390000009405.a.a.a.b.a.b.a.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000004428.a.h.d.a.b	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167 #34
Greater bamboo lemur	MODERN SPECIES	586	EVX1 (ENSPSMG00000014785) #7	HOXA13 (ENSPSMG00000014769) #8	HOXA11 (ENSPSMG00000014731) #9	ENSPSMG00000014718	ENSPSMG00000014712	HOXA9 (ENSPSMG00000014704) #11	HOXA7 (ENSPSMG00000014695) #12	HOXA6 (ENSPSMG00000014685) #13	HOXA5 (ENSPSMG00000014678) #14	HOXA3 (ENSPSMG00000014673) #16	HOXA2 (ENSPSMG00000014668) #17	HOXA1 (ENSPSMG00000014634) #18	SKAP2 (ENSPSMG00000014602) #19	SNX10 (ENSPSMG00000014541) #20	ENSPSMG00000014512 #21	HNRNPA2B1 (ENSPSMG00000014452) #22	NFE2L3 (ENSPSMG00000014366) #23	NPVF (ENSPSMG00000014349) #24	C7orf31 (ENSPSMG00000014334) #25	ENSPSMG00000014288 #26	ENSPSMG00000014277	OSBPL3 (ENSPSMG00000014087) #27	GSDME (ENSPSMG00000013865) #28	PALS2 (ENSPSMG00000013808) #29	NPY (ENSPSMG00000013748) #30	ENSPSMG00000013730	STK31 (ENSPSMG00000013704) #31	FAM221A (ENSPSMG00000013578) #32	CCDC126 (ENSPSMG00000013520) #33	TRA2A (ENSPSMG00000013516) #34	ENSPSMG00000013507 ##35
Laurasiatheria	ANCESTRAL SPECIES	22	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154431.e.b #22
Hedgehog	MODERN SPECIES	13573																HNRNPA2B1 (ENSEEUG00000014880) #22
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00390000009854	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.p ##26	ENSGT00390000009405.b.o.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Camelidae	ANCESTRAL SPECIES	2	ENSGT00930000152153	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000159522 #16	ENSGT00940000155029.c.a	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.f.c.b ##22	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.o.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Alpaca	MODERN SPECIES	1205													ENSVPAG00000010420	SNX10 (ENSVPAG00000010419) #20	CBX3 (ENSVPAG00000010418) #21	HNRNPA2B1 (ENSVPAG00000010417) #22	NFE2L3 (ENSVPAG00000010416) #23	NPVF (ENSVPAG00000010415) #24	C7orf31 (ENSVPAG00000010414) #25
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.p ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479
Cetacea	ANCESTRAL SPECIES	13	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT01030000235330.c.a	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.o.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565
Blue whale	MODERN SPECIES	20	EVX1 (ENSBMSG00010013302) #7	HOXA13 (ENSBMSG00010013314) #8	HOXA11 (ENSBMSG00010013325) #9	HOXA10 (ENSBMSG00010013344) #10	HOXA9 (ENSBMSG00010013373) #11	HOXA7 (ENSBMSG00010013396) #12	HOXA6 (ENSBMSG00010013414) #13	HOXA5 (ENSBMSG00010013430) #14	HOXA4 (ENSBMSG00010013444) #15	HOXA3 (ENSBMSG00010013449) #16	HOXA2 (ENSBMSG00010013466) #17	ENSBMSG00010013476 #18	SKAP2 (ENSBMSG00010013495) #19	SNX10 (ENSBMSG00010013517) #20	ENSBMSG00010013565 ##21	ENSBMSG00010013581 #22	NFE2L3 (ENSBMSG00010013602) #23	ENSBMSG00010013621	NPVF (ENSBMSG00010013643) #24	C7orf31 (ENSBMSG00010013660) #25	ENSBMSG00010013701 ##26	ENSBMSG00010013713	OSBPL3 (ENSBMSG00010013742) #27	GSDME (ENSBMSG00010007757) #28	PALS2 (ENSBMSG00010007846) #29	ENSBMSG00010007884	ENSBMSG00010007893	NPY (ENSBMSG00010007905) #30	ENSBMSG00010007911	ENSBMSG00010007916	ENSBMSG00010007922 #31
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.f.d ##22	ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT01030000235330.c.a	ENSGT00390000003271 #24	ENSGT00390000009405.b.o.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479
Sperm whale	MODERN SPECIES	16	EVX1 (ENSPCTG00005006960) #7	HOXA13 (ENSPCTG00005006985) #8	HOXA11 (ENSPCTG00005000283) #9	ENSPCTG00005000317	ENSPCTG00005000324 #10	HOXA9 (ENSPCTG00005000359) #11	HOXA7 (ENSPCTG00005000380) #12	HOXA6 (ENSPCTG00005000391) #13	HOXA5 (ENSPCTG00005000400) #14	HOXA4 (ENSPCTG00005000409) #15	HOXA2 (ENSPCTG00005000420) #17	HOXA1 (ENSPCTG00005000429) #18	SKAP2 (ENSPCTG00005000453) #19	SNX10 (ENSPCTG00005000481) #20	ENSPCTG00005000501 ##21	HNRNPA2B1 (ENSPCTG00005000537) #22	NFE2L3 (ENSPCTG00005000589) #23	ENSPCTG00005000600	NPVF (ENSPCTG00005000613) #24	ENSPCTG00005000629 ##26	ENSPCTG00005000640	OSBPL3 (ENSPCTG00005000674) #27	GSDME (ENSPCTG00005000772) #28	MPP6 (ENSPCTG00005000805) #29	NPY (ENSPCTG00005000824) #30	ENSPCTG00005000837 #31	ENSPCTG00005000876 #31	FAM221A (ENSPCTG00005000900) #32	ADAM22 (ENSPCTG00005001052)	SRI (ENSPCTG00005001464)	STEAP4 (ENSPCTG00005001543)
Odontoceti_a	ANCESTRAL SPECIES	13	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000009405.b.o.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000001447.pb.a	ENSGT00390000003271 #24	ENSGT00390000009405.b.o.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155196.n.a	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565
Vaquita	MODERN SPECIES	20	EVX1 (ENSPSNG00000014065) #7	HOXA13 (ENSPSNG00000014146) #8	HOXA11 (ENSPSNG00000014203) #9	HOXA10 (ENSPSNG00000014245) #10	HOXA9 (ENSPSNG00000014307) #11	HOXA7 (ENSPSNG00000014456) #12	HOXA6 (ENSPSNG00000014504) #13	HOXA5 (ENSPSNG00000014558) #14	HOXA4 (ENSPSNG00000014619) #15	HOXA3 (ENSPSNG00000014676) #16	HOXA2 (ENSPSNG00000014724) #17	HOXA1 (ENSPSNG00000014773) #18	SKAP2 (ENSPSNG00000014836) #19	SNX10 (ENSPSNG00000014940) #20	ENSPSNG00000015118 ##21	ENSPSNG00000015202 #22	NFE2L3 (ENSPSNG00000015368) #23	ENSPSNG00000015465	NPVF (ENSPSNG00000015564) #24	ENSPSNG00000015619 ##26	OSBPL3 (ENSPSNG00000015710) #27	ENSPSNG00000015897	GSDME (ENSPSNG00000015923) #28	PALS2 (ENSPSNG00000016078) #29	NPY (ENSPSNG00000016221) #30	ENSPSNG00000016288 #31	ENSPSNG00000016445 #31	FAM221A (ENSPSNG00000016541) #32	ADAM22 (ENSPSNG00000016901)	SRI (ENSPSNG00000018120)	STEAP4 (ENSPSNG00000018328)
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000001447.pb.a	ENSGT00390000003271 #24	ENSGT00390000009405.b.o.b.a ##26	ENSGT00940000155957 #27	ENSGT00940000155196.n.a	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565
Beluga whale	MODERN SPECIES	72	EVX1 (ENSDLEG00000009229) #7	HOXA13 (ENSDLEG00000009264) #8	HOXA11 (ENSDLEG00000009292) #9	HOXA10 (ENSDLEG00000009312) #10	HOXA9 (ENSDLEG00000009337) #11	HOXA7 (ENSDLEG00000009351) #12	HOXA6 (ENSDLEG00000009363) #13	HOXA5 (ENSDLEG00000009373) #14	HOXA4 (ENSDLEG00000009384) #15	HOXA3 (ENSDLEG00000009412) #16	HOXA2 (ENSDLEG00000009422) #17	HOXA1 (ENSDLEG00000009441) #18	SKAP2 (ENSDLEG00000009464) #19	SNX10 (ENSDLEG00000009511) #20	CBX3 (ENSDLEG00000009530) ##21	HNRNPA2B1 (ENSDLEG00000009544) #22	NFE2L3 (ENSDLEG00000009586) #23	ENSDLEG00000009623	NPVF (ENSDLEG00000009634) #24	ENSDLEG00000009662 ##26	OSBPL3 (ENSDLEG00000009692) #27	ENSDLEG00000009794	GSDME (ENSDLEG00000009804) #28	ENSDLEG00000009832	MPP6 (ENSDLEG00000009849) #29	NPY (ENSDLEG00000009897) #30	STK31 (ENSDLEG00000009920) #31	FAM221A (ENSDLEG00000010001) #32	ADAM22 (ENSDLEG00000010449)	SRI (ENSDLEG00000015160)	STEAP4 (ENSDLEG00000015175)
Narwhal	MODERN SPECIES	306	EVX1 (ENSMMNG00015006342) #7	HOXA13 (ENSMMNG00015006328) #8	HOXA11 (ENSMMNG00015006318) #9	ENSMMNG00015006310	HOXA9 (ENSMMNG00015006287) #11	HOXA7 (ENSMMNG00015006271) #12	HOXA6 (ENSMMNG00015006261) #13	HOXA5 (ENSMMNG00015006249) #14	HOXA4 (ENSMMNG00015006236) #15	HOXA3 (ENSMMNG00015006227) #16	HOXA2 (ENSMMNG00015006212) #17	HOXA1 (ENSMMNG00015006195) #18	SKAP2 (ENSMMNG00015006170) #19	SNX10 (ENSMMNG00015006146) #20	CBX3 (ENSMMNG00015006116) #21	ENSMMNG00015006029 #22	NFE2L3 (ENSMMNG00015005990) #23	ENSMMNG00015005975	ENSMMNG00015005956	NPVF (ENSMMNG00015005934) #24	ENSMMNG00015005923 ##26	ENSMMNG00015005917	OSBPL3 (ENSMMNG00015005858) #27	GSDME (ENSMMNG00015005808) #28	PALS2 (ENSMMNG00015005747) #29	NPY (ENSMMNG00015005716) #30	ENSMMNG00015005679 #31	ENSMMNG00015005655 #31	FAM221A (ENSMMNG00015005604) #32	ADAM22 (ENSMMNG00015005547)	SRI (ENSMMNG00015005495)
Pecora	ANCESTRAL SPECIES	11	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.p.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479
Percora_a	ANCESTRAL SPECIES	11	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.p.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	87	EVX1 (ENSMMSG00000008787) #7	HOXA13 (ENSMMSG00000008765) #8	HOXA11 (ENSMMSG00000008748) #9	HOXA10 (ENSMMSG00000008727) #10	HOXA9 (ENSMMSG00000008679) #11	HOXA7 (ENSMMSG00000008650) #12	HOXA6 (ENSMMSG00000008621) #13	HOXA5 (ENSMMSG00000008606) #14	HOXA4 (ENSMMSG00000008591) #15	HOXA3 (ENSMMSG00000008574) #16	HOXA2 (ENSMMSG00000008551) #17	HOXA1 (ENSMMSG00000008512) #18	SKAP2 (ENSMMSG00000008475) #19	SNX10 (ENSMMSG00000008398) #20	CBX3 (ENSMMSG00000008333) #21	ENSMMSG00000008126 #22	NFE2L3 (ENSMMSG00000008071) #23	ENSMMSG00000008040 ##22	NPVF (ENSMMSG00000008017) #24	C7orf31 (ENSMMSG00000007922) #25	ENSMMSG00000007897 ##26	ENSMMSG00000007886	OSBPL3 (ENSMMSG00000007737) #27	GSDME (ENSMMSG00000007631) #28	PALS2 (ENSMMSG00000007548) #29	NPY (ENSMMSG00000007524) #30	STK31 (ENSMMSG00000007029) #31	FAM221A (ENSMMSG00000006804) #32	ADAM22 (ENSMMSG00000005953)	SRI (ENSMMSG00000005792)	STEAP4 (ENSMMSG00000013499)
Siberian musk deer	MODERN SPECIES	87	FKBP9 (ENSMMSG00000013301)	KBTBD2 (ENSMMSG00000013277)	AVL9 (ENSMMSG00000013195)	LSM5 (ENSMMSG00000013162)	PDE1C (ENSMMSG00000013039)	PPP1R17 (ENSMMSG00000012998)	ITPRID1 (ENSMMSG00000012854)	NEUROD6 (ENSMMSG00000012842)	ADCYAP1R1 (ENSMMSG00000011609)	GHRHR (ENSMMSG00000011527)	AQP1 (ENSMMSG00000011496)	MINDY4 (ENSMMSG00000011375)	ENSMMSG00000011350	CRHR2 (ENSMMSG00000011057)	GARS1 (ENSMMSG00000010996)	ENSMMSG00000010861 #22	GGCT (ENSMMSG00000010811)	NOD1 (ENSMMSG00000010746)	ZNRF2 (ENSMMSG00000010692)	MTURN (ENSMMSG00000010670)	PLEKHA8 (ENSMMSG00000010578)	FKBP14 (ENSMMSG00000010546)	SCRN1 (ENSMMSG00000010472)	WIPF3 (ENSMMSG00000010392)	PRR15 (ENSMMSG00000010370)	CHN2 (ENSMMSG00000009425)	CPVL (ENSMMSG00000009268)	TRIL (ENSMMSG00000009241)	CREB5 (ENSMMSG00000009091)	ENSMMSG00000009066	JAZF1 (ENSMMSG00000009021)
Bovidae	ANCESTRAL SPECIES	12	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.p.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479
Bovinae	ANCESTRAL SPECIES	8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00960000190781	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.p.a ##26	ENSGT00940000155957 #27	ENSGT00940000154796.C.b.b	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000164601.f	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B
American bison	DUPLICATION
American bison	MODERN SPECIES	3216	ENSBBBG00000023700	DYNC1H1 (ENSBBBG00000006196)	ENSBBBG00000023788	HSP90AA1 (ENSBBBG00000023932)	WDR20 (ENSBBBG00000023985)	ENSBBBG00000024008	CINP (ENSBBBG00000024144)	TECPR2 (ENSBBBG00000006291)	ENSBBBG00000024185	RCOR1 (ENSBBBG00000000286)	ENSBBBG00000024266	TRAF3 (ENSBBBG00000008712)	CDC42BPB (ENSBBBG00000024454)	LBHD2 (ENSBBBG00000024466)	ENSBBBG00000006381	ENSBBBG00000024496 #22	EIF5 (ENSBBBG00000024526)	MARK3 (ENSBBBG00000007721)	ENSBBBG00000006806	CKB (ENSBBBG00000024829)	TRMT61A (ENSBBBG00000006541)	BAG5 (ENSBBBG00000006546)	ENSBBBG00000024856	ENSBBBG00000024861	ENSBBBG00000008050	KLC1 (ENSBBBG00000025259)	ENSBBBG00000025291	PPP1R13B (ENSBBBG00000025430)	ENSBBBG00000025488	RD3L (ENSBBBG00000011601)	TDRD9 (ENSBBBG00000011627)
American bison	MODERN SPECIES	3278	ENSBBBG00000020482 #8	HOXA11 (ENSBBBG00000020500) #9	ENSBBBG00000020506	ENSBBBG00000005537 #11	HOXA7 (ENSBBBG00000020511) #12	HOXA6 (ENSBBBG00000020515) #13	HOXA5 (ENSBBBG00000020518) #14	ENSBBBG00000020521 #15	HOXA3 (ENSBBBG00000005541) #16	HOXA2 (ENSBBBG00000020536) #17	HOXA1 (ENSBBBG00000020558) #18	ENSBBBG00000005551	SKAP2 (ENSBBBG00000020584) #19	SNX10 (ENSBBBG00000006863) #20	ENSBBBG00000020651 ##21	ENSBBBG00000007053 #22	NFE2L3 (ENSBBBG00000020743) #23	NPVF (ENSBBBG00000020751) #24	C7orf31 (ENSBBBG00000005601) #25	ENSBBBG00000020786 ##26	OSBPL3 (ENSBBBG00000021014) #27	ENSBBBG00000021036	GSDME (ENSBBBG00000021137) #28	PALS2 (ENSBBBG00000021173) #29	NPY (ENSBBBG00000021182) #30	STK31 (ENSBBBG00000005696) #31	FAM221A (ENSBBBG00000021312) #32	ENSBBBG00000021325	ADAM22 (ENSBBBG00000021555)	SRI (ENSBBBG00000021602)
Bos	ANCESTRAL SPECIES	8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00960000190781	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.p.a ##26	ENSGT00940000155957 #27	ENSGT00940000154796.C.b.b	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000164601.f	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B
Bos_b	ANCESTRAL SPECIES	7	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00960000190781	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00940000157883.a.b.e.b.e.a.a	ENSGT00940000155957 #27	ENSGT00940000154796.C.b.b	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565
Hybrid Bos Indicus	MODERN SPECIES	23	HOXA11 (ENSBIXG00005015251) #9	HOXA10 (ENSBIXG00005015278) #10	HOXA9 (ENSBIXG00005015312) #11	HOXA7 (ENSBIXG00005015346) #12	HOXA6 (ENSBIXG00005002254) #13	HOXA5 (ENSBIXG00005015377) #14	HOXA4 (ENSBIXG00005015410) #15	HOXA3 (ENSBIXG00005015435) #16	HOXA2 (ENSBIXG00005015454) #17	HOXA1 (ENSBIXG00005015513) #18	ENSBIXG00005007546	SKAP2 (ENSBIXG00005002343) #19	ENSBIXG00005015618	SNX10 (ENSBIXG00005015700) #20	CBX3 (ENSBIXG00005015743) #21	ENSBIXG00005015830 #22	NFE2L3 (ENSBIXG00005015851) #23	NPVF (ENSBIXG00005015893) #24	C7orf31 (ENSBIXG00005015905) #25	ENSBIXG00005015956	OSBPL3 (ENSBIXG00005016040) #27	ENSBIXG00005016073	GSDME (ENSBIXG00005016114) #28	ENSBIXG00005016118	PALS2 (ENSBIXG00005016242) #29	NPY (ENSBIXG00005005722) #30	STK31 (ENSBIXG00005016477) #31	ENSBIXG00005016514	ADAM22 (ENSBIXG00005016837)	SRI (ENSBIXG00005016923)	ENSBIXG00005007515
Bos_a	ANCESTRAL SPECIES	12	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00960000190781	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.p.a ##26	ENSGT00940000155957 #27	ENSGT00940000154796.C.b.b	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000164601.f	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B
Wild yak	MODERN SPECIES	1550	ENSBMUG00000002455	ENSBMUG00000002522 #9	ENSBMUG00000002543	HOXA9 (ENSBMUG00000002568) #11	HOXA7 (ENSBMUG00000002587) #12	HOXA6 (ENSBMUG00000002606) #13	HOXA5 (ENSBMUG00000002631) #14	ENSBMUG00000002645 #15	HOXA3 (ENSBMUG00000002664) #16	HOXA2 (ENSBMUG00000002681) #17	HOXA1 (ENSBMUG00000002735) #18	ENSBMUG00000002753	SKAP2 (ENSBMUG00000002819) #19	SNX10 (ENSBMUG00000002905) #20	CBX3 (ENSBMUG00000002936) #21	ENSBMUG00000003049 #22	NFE2L3 (ENSBMUG00000003080) #23
Domestic yak	MODERN SPECIES	23	HOXA13 (ENSBGRG00000002092) #8	HOXA11 (ENSBGRG00000002077) #9	hoxA10 (ENSBGRG00000002072)	HOXA9 (ENSBGRG00000002058) #11	HOXA7 (ENSBGRG00000002048) #12	HOXA6 (ENSBGRG00000002039) #13	HOXA5 (ENSBGRG00000002031) #14	HOXA4 (ENSBGRG00000002016) #15	HOXA3 (ENSBGRG00000001999) #16	HOXA2 (ENSBGRG00000001989) #17	HOXA1 (ENSBGRG00000001963) #18	ENSBGRG00000001956	SKAP2 (ENSBGRG00000001745) #19	SNX10 (ENSBGRG00000001644) #20	ENSBGRG00000001597 ##21	ENSBGRG00000001515 #22	NFE2L3 (ENSBGRG00000001498) #23	NPVF (ENSBGRG00000001474) #24	C7orf31 (ENSBGRG00000001447) #25	ENSBGRG00000001429	OSBPL3 (ENSBGRG00000001354) #27	ENSBGRG00000001326	GSDME (ENSBGRG00000001265) #28	PALS2 (ENSBGRG00000001147) #29	NPY (ENSBGRG00000001085) #30	STK31 (ENSBGRG00000000834) #31	FAM221A (ENSBGRG00000000639) #32	ENSBGRG00000000609	ADAM22 (ENSBGRG00000000282)	SRI (ENSBGRG00000021029)	STEAP4 (ENSBGRG00000020969)
Caprinae	ANCESTRAL SPECIES	10	ENSGT00700000106050	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00940000157883.a.b.e.b.e.a.b.a	ENSGT00940000157883.a.b.e.b.e.a.a	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565
Rambouillet Sheep	MODERN SPECIES	20	HOXA13 (ENSOARG00020000130) #8	ENSOARG00020000154	HOXA11 (ENSOARG00020000170) #9	ENSOARG00020000180	HOXA9 (ENSOARG00020000214) #11	HOXA7 (ENSOARG00020000223) #12	HOXA6 (ENSOARG00020000238) #13	HOXA5 (ENSOARG00020000251) #14	HOXA4 (ENSOARG00020000267) #15	HOXA3 (ENSOARG00020000280) #16	HOXA2 (ENSOARG00020000291) #17	HOXA1 (ENSOARG00020000312) #18	SKAP2 (ENSOARG00020000333) #19	SNX10 (ENSOARG00020000354) #20	ENSOARG00020000374 #21	HNRNPA2B1 (ENSOARG00020000397) #22	NFE2L3 (ENSOARG00020000455) #23	ENSOARG00020000488	NPVF (ENSOARG00020000502) #24	CYCS (ENSOARG00020000536)	OSBPL3 (ENSOARG00020000582) #27	GSDME (ENSOARG00020000709) #28	PALS2 (ENSOARG00020000732) #29	NPY (ENSOARG00020000795) #30	STK31 (ENSOARG00020000834) #31	FAM221A (ENSOARG00020000940) #32	ADAM22 (ENSOARG00020001114)	SRI (ENSOARG00020001780)	STEAP4 (ENSOARG00020001847)	TEX47 (ENSOARG00020001862)	STEAP1 (ENSOARG00020001900)
Goat	MODERN SPECIES	23	EVX1 (ENSCHIG00000015016) #7	HOXA13 (ENSCHIG00000008199) #8	HOXA11 (ENSCHIG00000020568) #9	HOXA10 (ENSCHIG00000014836) #10	HOXA9 (ENSCHIG00000004716) #11	HOXA7 (ENSCHIG00000021947) #12	HOXA6 (ENSCHIG00000015611) #13	HOXA5 (ENSCHIG00000005534) #14	HOXA4 (ENSCHIG00000019699) #15	HOXA3 (ENSCHIG00000014179) #16	HOXA2 (ENSCHIG00000024428) #17	HOXA1 (ENSCHIG00000023757) #18	SKAP2 (ENSCHIG00000011784) #19	SNX10 (ENSCHIG00000021478) #20	CBX3 (ENSCHIG00000010019) #21	ENSCHIG00000022444 #22	NFE2L3 (ENSCHIG00000009777) #23	NPVF (ENSCHIG00000021793) #24	C7orf31 (ENSCHIG00000012874) #25	ENSCHIG00000025853	OSBPL3 (ENSCHIG00000017106) #27	GSDME (ENSCHIG00000026791) #28	PALS2 (ENSCHIG00000018994) #29	NPY (ENSCHIG00000007443) #30	STK31 (ENSCHIG00000018707) #31	FAM221A (ENSCHIG00000010375) #32	ADAM22 (ENSCHIG00000021489)	SRI (ENSCHIG00000015421)	STEAP4 (ENSCHIG00000008525)	TEX47 (ENSCHIG00000008630)	ZNF804B (ENSCHIG00000015623)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	8	USP53 (ENSCHYG00000019385)	MYOZ2 (ENSCHYG00000019531)	SYNPO2 (ENSCHYG00000019608)	SEC24D (ENSCHYG00000019930)	METTL14 (ENSCHYG00000020653)	ENSCHYG00000020777	PRSS12 (ENSCHYG00000020827)	NDST3 (ENSCHYG00000021158)	TRAM1L1 (ENSCHYG00000021312)	ENSCHYG00000021359	NDST4 (ENSCHYG00000021418)	UGT8 (ENSCHYG00000021551)	ENSCHYG00000021625	ENSCHYG00000021651	ARSJ (ENSCHYG00000021686)	ENSCHYG00000021709 #22	CAMK2D (ENSCHYG00000021900)	ENSCHYG00000013660	LARP7 (ENSCHYG00000016420)	ZGRF1 (ENSCHYG00000016563)	NEUROG2 (ENSCHYG00000016884)	ALPK1 (ENSCHYG00000016924)	TIFA (ENSCHYG00000017159)	AP1AR (ENSCHYG00000017199)	FAM241A (ENSCHYG00000017369)	ENSCHYG00000017401	ENSCHYG00000017419	PITX2 (ENSCHYG00000017532)	ENPEP (ENSCHYG00000017750)	ELOVL6 (ENSCHYG00000018333)	ENSCHYG00000018367
Yarkand deer	MODERN SPECIES	9	EVX1 (ENSCHYG00000007735) #7	HOXA13 (ENSCHYG00000007767) #8	HOXA11 (ENSCHYG00000007789) #9	ENSCHYG00000007809	HOXA9 (ENSCHYG00000007842) #11	HOXA7 (ENSCHYG00000007865) #12	HOXA6 (ENSCHYG00000007892) #13	HOXA5 (ENSCHYG00000007908) #14	HOXA4 (ENSCHYG00000007930) #15	HOXA3 (ENSCHYG00000007949) #16	HOXA2 (ENSCHYG00000007974) #17	HOXA1 (ENSCHYG00000007989) #18	SKAP2 (ENSCHYG00000008025) #19	SNX10 (ENSCHYG00000008200) #20	ENSCHYG00000008298 ##21	ENSCHYG00000008354 #22	NFE2L3 (ENSCHYG00000008565) #23	NPVF (ENSCHYG00000008663) #24	C7orf31 (ENSCHYG00000008694) #25	ENSCHYG00000008826 ##26	OSBPL3 (ENSCHYG00000008908) #27	GSDME (ENSCHYG00000009207) #28	PALS2 (ENSCHYG00000009307) #29	ENSCHYG00000009467 #30	STK31 (ENSCHYG00000009576) #31	FAM221A (ENSCHYG00000010664) #32	ADAM22 (ENSCHYG00000010910)	SRI (ENSCHYG00000012106)	STEAP4 (ENSCHYG00000012322)	ZNF804B (ENSCHYG00000012375)	TEX47 (ENSCHYG00000012413)
Suina	ANCESTRAL SPECIES	19	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.f ##21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.q.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00530000063186.b.a
Pig	MODERN SPECIES	9	HIBADH (ENSSSCG00000016695)	EVX1 (ENSSSCG00000016696) #7	HOXA13 (ENSSSCG00000062559) #8	HOXA11 (ENSSSCG00000016698) #9	HOXA10 (ENSSSCG00000021204) #10	HOXA9 (ENSSSCG00000028997) #11	HOXA7 (ENSSSCG00000016701) #12	HOXA5 (ENSSSCG00000016703) #14	ENSSSCG00000016704	HOXA3 (ENSSSCG00000016705) #16	HOXA2 (ENSSSCG00000016706) #17	HOXA1 (ENSSSCG00000016707) #18	SKAP2 (ENSSSCG00000016708) #19	SNX10 (ENSSSCG00000037598) #20	CBX3 (ENSSSCG00000016711) ##21	ENSSSCG00000036350 #22	NFE2L3 (ENSSSCG00000026894) #23	NPVF (ENSSSCG00000036611) #24	C7orf31 (ENSSSCG00000033313) #25	ENSSSCG00000034622	CYCS (ENSSSCG00000016714)	OSBPL3 (ENSSSCG00000016715) #27	GSDME (ENSSSCG00000016716) #28	PALS2 (ENSSSCG00000016717) #29	NPY (ENSSSCG00000016718) #30	ENSSSCG00000037148	ENSSSCG00000016719 #31	ENSSSCG00000056164 #31	FAM221A (ENSSSCG00000038792) #32	UPP1 (ENSSSCG00000030388)	C7orf57 (ENSSSCG00000033266)
Chacoan peccary	MODERN SPECIES	77	EVX1 (ENSCWAG00000009983) #7	HOXA13 (ENSCWAG00000010027) #8	HOXA11 (ENSCWAG00000010061) #9	HOXA10 (ENSCWAG00000010088) #10	HOXA9 (ENSCWAG00000000059) #11	HOXA7 (ENSCWAG00000000085) #12	HOXA6 (ENSCWAG00000000104) #13	HOXA5 (ENSCWAG00000000120) #14	ENSCWAG00000000132 #15	HOXA3 (ENSCWAG00000000149) #16	HOXA2 (ENSCWAG00000000162) #17	HOXA1 (ENSCWAG00000000172) #18	SKAP2 (ENSCWAG00000000198) #19	SNX10 (ENSCWAG00000000244) #20	ENSCWAG00000000333 ##21	HNRNPA2B1 (ENSCWAG00000000378) #22	NFE2L3 (ENSCWAG00000000464) #23	NPVF (ENSCWAG00000000489) #24	C7orf31 (ENSCWAG00000000512) #25	ENSCWAG00000000536 ##26	OSBPL3 (ENSCWAG00000000578) #27	ENSCWAG00000000638	GSDME (ENSCWAG00000000655) #28	PALS2 (ENSCWAG00000000694) #29	NPY (ENSCWAG00000000744) #30	STK31 (ENSCWAG00000000802) #31	FAM221A (ENSCWAG00000001136) #32	UPP1 (ENSCWAG00000001201)	C7orf57 (ENSCWAG00000001234)	SUN3 (ENSCWAG00000001274)	HUS1 (ENSCWAG00000001301)
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Chiroptera	ANCESTRAL SPECIES	24	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Megabat	MODERN SPECIES	1056														SNX10 (ENSPVAG00000006298) #20	CBX3 (ENSPVAG00000006297) ##21	HNRNPA2B1 (ENSPVAG00000006296) #22	NFE2L3 (ENSPVAG00000006295) #23
Microchiroptera	ANCESTRAL SPECIES	24	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Microbat	MODERN SPECIES	989	EVX1 (ENSMLUG00000007499) #7	HOXA13 (ENSMLUG00000008332) #8	HOXA11 (ENSMLUG00000008300) #9	ENSMLUG00000027272	HOXA7 (ENSMLUG00000008289) #12	HOXA6 (ENSMLUG00000014517) #13	HOXA5 (ENSMLUG00000028593) #14	ENSMLUG00000022220 ##15	HOXA3 (ENSMLUG00000014502) #16	HOXA2 (ENSMLUG00000014499) #17	HOXA1 (ENSMLUG00000014496) #18	ENSMLUG00000023915 #19	ENSMLUG00000014485 #19	SNX10 (ENSMLUG00000000285) #20	CBX3 (ENSMLUG00000007591) #21	ENSMLUG00000007578 #22	NFE2L3 (ENSMLUG00000007549) #23	ENSMLUG00000023699	C7orf31 (ENSMLUG00000016521) #25	ENSMLUG00000009521 ##26	OSBPL3 (ENSMLUG00000011152) #27	GSDME (ENSMLUG00000011133) #28	PALS2 (ENSMLUG00000006787) #29	NPY (ENSMLUG00000004126) #30	STK31 (ENSMLUG00000010598) #31	FAM221A (ENSMLUG00000013979) #32	CCDC126 (ENSMLUG00000010591) #33	TRA2A (ENSMLUG00000013972) #34	IGF2BP3 (ENSMLUG00000008451) #35	MALSU1 (ENSMLUG00000027691) #36	GPNMB (ENSMLUG00000008423) #37
Greater horseshoe bat	MODERN SPECIES	12	HOXA13 (ENSRFEG00010007129) #8	HOXA11 (ENSRFEG00010007153) #9	ENSRFEG00010007175	HOXA9 (ENSRFEG00010007211) #11	HOXA7 (ENSRFEG00010007246) #12	HOXA6 (ENSRFEG00010007277) #13	HOXA5 (ENSRFEG00010007299) #14	HOXA4 (ENSRFEG00010007327) #15	HOXA3 (ENSRFEG00010007370) #16	HOXA2 (ENSRFEG00010007382) #17	HOXA1 (ENSRFEG00010007395) #18	SKAP2 (ENSRFEG00010007437) #19	ENSRFEG00010007479	SNX10 (ENSRFEG00010007496) #20	CBX3 (ENSRFEG00010007556) #21	HNRNPA2B1 (ENSRFEG00010007611) #22	NFE2L3 (ENSRFEG00010007944) #23	ENSRFEG00010007962	NPVF (ENSRFEG00010007973) #24	C7orf31 (ENSRFEG00010008020) #25	ENSRFEG00010008111 ##26	OSBPL3 (ENSRFEG00010008157) #27	GSDME (ENSRFEG00010008316) #28	PALS2 (ENSRFEG00010008380) #29	ENSRFEG00010008487	ENSRFEG00010008531	NPY (ENSRFEG00010008575) #30	STK31 (ENSRFEG00010008639) #31	FAM221A (ENSRFEG00010009279) #32	CCDC126 (ENSRFEG00010009346) #33	TRA2A (ENSRFEG00010009374) #34
Equus	ANCESTRAL SPECIES	13	ENSGT00940000155255	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT01000000214669	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00940000157883.a.b.e.b	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Donkey	MODERN SPECIES		ENSEASG00005000084	HIBADH (ENSEASG00005000063)	EVX1 (ENSEASG00005000033) #7	HOXA13 (ENSEASG00005022194) #8	HOXA11 (ENSEASG00005022180) #9	HOXA10 (ENSEASG00005022176) #10	ENSEASG00005022172 #11	ENSEASG00005028567 #12	HOXA5 (ENSEASG00005034554) #14	HOXA3 (ENSEASG00005035791) #16	HOXA2 (ENSEASG00005033684) #17	HOXA1 (ENSEASG00005030120) #18	SKAP2 (ENSEASG00005022133) #19	SNX10 (ENSEASG00005022123) #20	CBX3 (ENSEASG00005022119) #21	HNRNPA2B1 (ENSEASG00005022108) #22	NFE2L3 (ENSEASG00005022104) #23	ENSEASG00005022095	NPVF (ENSEASG00005022093) #24	C7orf31 (ENSEASG00005022075) #25	CYCS (ENSEASG00005038171)	OSBPL3 (ENSEASG00005022065) #27	GSDME (ENSEASG00005022048) #28	PALS2 (ENSEASG00005022041) #29	NPY (ENSEASG00005025389) #30	STK31 (ENSEASG00005022020) #31	FAM221A (ENSEASG00005022011) #32	CCDC126 (ENSEASG00005022005) #33	TRA2A (ENSEASG00005022002) #34	IGF2BP3 (ENSEASG00005021998) #35	MALSU1 (ENSEASG00005021994) #36
Horse	MODERN SPECIES	25	ENSECAG00000054721	HIBADH (ENSECAG00000016863)	EVX1 (ENSECAG00000014337) #7	HOXA13 (ENSECAG00000038185) #8	HOXA11 (ENSECAG00000058817) #9	HOXA10 (ENSECAG00000012577) #10	HOXA9 (ENSECAG00000054482) #11	HOXA7 (ENSECAG00000054772) #12	HOXA6 (ENSECAG00000000575) #13	HOXA5 (ENSECAG00000000461) #14	HOXA3 (ENSECAG00000022055) #16	HOXA2 (ENSECAG00000000451) #17	HOXA1 (ENSECAG00000021767) #18	SKAP2 (ENSECAG00000020343) #19	SNX10 (ENSECAG00000013745) #20	HNRNPA2B1 (ENSECAG00000000782) #22	NFE2L3 (ENSECAG00000021973) #23	ENSECAG00000058694	NPVF (ENSECAG00000021063) #24	C4H7orf31 (ENSECAG00000016478) #25	CYCS (ENSECAG00000014330)	OSBPL3 (ENSECAG00000023989) #27	GSDME (ENSECAG00000021145) #28	PALS2 (ENSECAG00000009638) #29	NPY (ENSECAG00000008726) #30	STK31 (ENSECAG00000021842) #31	FAM221A (ENSECAG00000021316) #32	ENSECAG00000055994	CCDC126 (ENSECAG00000019742) #33	TRA2A (ENSECAG00000011508) #34	ENSECAG00000060279 #35
Carnivora	ANCESTRAL SPECIES	15	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Felidae	ANCESTRAL SPECIES	13	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.n.a.a.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35
Cat	MODERN SPECIES	1	EVX1 (ENSFCAG00000023523) #7	HOXA13 (ENSFCAG00000041347) #8	HOXA11 (ENSFCAG00000007945) #9	HOXA10 (ENSFCAG00000025359) #10	HOXA9 (ENSFCAG00000036304) #11	HOXA7 (ENSFCAG00000022150) #12	HOXA6 (ENSFCAG00000034134) #13	HOXA5 (ENSFCAG00000045684) #14	HOXA4 (ENSFCAG00000035258) #15	HOXA3 (ENSFCAG00000028952) #16	HOXA2 (ENSFCAG00000007939) #17	HOXA1 (ENSFCAG00000007937) #18	SKAP2 (ENSFCAG00000025910) #19	SNX10 (ENSFCAG00000041224) #20	ENSFCAG00000034520 ##21	HNRNPA2B1 (ENSFCAG00000027765) #22	NFE2L3 (ENSFCAG00000031293) #23	NPVF (ENSFCAG00000008467) #24	CA2H7orf31 (ENSFCAG00000023175) #25	ENSFCAG00000036552 ##26	ENSFCAG00000034184	OSBPL3 (ENSFCAG00000010032) #27	GSDME (ENSFCAG00000014873) #28	PALS2 (ENSFCAG00000014869) #29	NPY (ENSFCAG00000010966) #30	STK31 (ENSFCAG00000028451) #31	FAM221A (ENSFCAG00000028026) #32	CCDC126 (ENSFCAG00000032411) #33	ENSFCAG00000049378	TRA2A (ENSFCAG00000005361) #34	IGF2BP3 (ENSFCAG00000030786) #35
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.n.a.a.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT01030000235027	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Tiger	MODERN SPECIES	97	TAX1BP1 (ENSPTIG00000021227)	HIBADH (ENSPTIG00000010859)	ENSPTIG00000011221	ENSPTIG00000011682 #8	HOXA11 (ENSPTIG00000011979) #9	ENSPTIG00000012506	HOXA9 (ENSPTIG00000013356) #11	HOXA7 (ENSPTIG00000013517) #12	HOXA6 (ENSPTIG00000014100) #13	ENSPTIG00000014314 #15	HOXA2 (ENSPTIG00000014716) #17	HOXA1 (ENSPTIG00000015859) #18	SKAP2 (ENSPTIG00000016077) #19	SNX10 (ENSPTIG00000017994) #20	CBX3 (ENSPTIG00000019324) #21	ENSPTIG00000019833 #22	NFE2L3 (ENSPTIG00000000753) #23
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.n.a.a.a ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
leopard	MODERN SPECIES	9	EVX1 (ENSPPRG00000007045) #7	HOXA13 (ENSPPRG00000007567) #8	HOXA11 (ENSPPRG00000008199) #9	HOXA10 (ENSPPRG00000009005) #10	HOXA9 (ENSPPRG00000009245) #11	HOXA7 (ENSPPRG00000009429) #12	HOXA6 (ENSPPRG00000009699) #13	HOXA5 (ENSPPRG00000009947) #14	HOXA4 (ENSPPRG00000010242) #15	HOXA3 (ENSPPRG00000010844) #16	HOXA2 (ENSPPRG00000011302) #17	HOXA1 (ENSPPRG00000011916) #18	SKAP2 (ENSPPRG00000012204) #19	SNX10 (ENSPPRG00000014532) #20	CBX3 (ENSPPRG00000016142) #21	HNRNPA2B1 (ENSPPRG00000019212) #22	NFE2L3 (ENSPPRG00000021279) #23	ENSPPRG00000022533	NPVF (ENSPPRG00000023448) #24	C7orf31 (ENSPPRG00000023165) #25	ENSPPRG00000000193 ##26	OSBPL3 (ENSPPRG00000006524) #27	GSDME (ENSPPRG00000008422) #28	PALS2 (ENSPPRG00000008805) #29	NPY (ENSPPRG00000009455) #30	ENSPPRG00000009566	STK31 (ENSPPRG00000012594) #31	FAM221A (ENSPPRG00000013560) #32	CCDC126 (ENSPPRG00000014486) #33	TRA2A (ENSPPRG00000015216) #34	ENSPPRG00000020147
lion	MODERN SPECIES	2	EVX1 (ENSPLOG00000007612) #7	HOXA13 (ENSPLOG00000007596) #8	HOXA11 (ENSPLOG00000007576) #9	ENSPLOG00000007559	HOXA9 (ENSPLOG00000007540) #11	HOXA7 (ENSPLOG00000007529) #12	HOXA6 (ENSPLOG00000007517) #13	HOXA5 (ENSPLOG00000007500) #14	HOXA4 (ENSPLOG00000007478) #15	HOXA3 (ENSPLOG00000007461) #16	HOXA2 (ENSPLOG00000007449) #17	HOXA1 (ENSPLOG00000007430) #18	SKAP2 (ENSPLOG00000007389) #19	SNX10 (ENSPLOG00000007289) #20	CBX3 (ENSPLOG00000007256) #21	ENSPLOG00000007132 #22	NFE2L3 (ENSPLOG00000007066) #23	NPVF (ENSPLOG00000007044) #24	C7orf31 (ENSPLOG00000007012) #25	ENSPLOG00000006975 ##26	OSBPL3 (ENSPLOG00000006925) #27	GSDME (ENSPLOG00000006850) #28	PALS2 (ENSPLOG00000006803) #29	NPY (ENSPLOG00000006774) #30	STK31 (ENSPLOG00000006529) #31	FAM221A (ENSPLOG00000006376) #32	CCDC126 (ENSPLOG00000006333) #33	TRA2A (ENSPLOG00000006313) #34	IGF2BP3 (ENSPLOG00000006261) #35	MALSU1 (ENSPLOG00000006242) #36	GPNMB (ENSPLOG00000006176) #37
Caniformia	ANCESTRAL SPECIES	11	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000172584.c.a	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT00940000154957.B #35
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000172584.c.a	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT00940000154957.B #35
Mustelinae	ANCESTRAL SPECIES	9	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000172584.c.a	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Ferret	MODERN SPECIES	251	HIBADH (ENSMPUG00000004863)	EVX1 (ENSMPUG00000004859) #7	HOXA13 (ENSMPUG00000004851) #8	HOXA11 (ENSMPUG00000004822) #9	HOXA10 (ENSMPUG00000004815) #10	HOXA9 (ENSMPUG00000004809) #11	HOXA7 (ENSMPUG00000004789) #12	HOXA6 (ENSMPUG00000004779) #13	HOXA5 (ENSMPUG00000004770) #14	HOXA4 (ENSMPUG00000004732) #15	HOXA3 (ENSMPUG00000004727) #16	HOXA2 (ENSMPUG00000004721) #17	HOXA1 (ENSMPUG00000004711) #18	SKAP2 (ENSMPUG00000004697) #19	SNX10 (ENSMPUG00000004686) #20	ENSMPUG00000004554 #22	NFE2L3 (ENSMPUG00000004526) #23	ENSMPUG00000004517	NPVF (ENSMPUG00000004494) #24	C7orf31 (ENSMPUG00000004447) #25
American mink	MODERN SPECIES	24	EVX1 (ENSNVIG00000012041) #7	HOXA13 (ENSNVIG00000012062) #8	HOXA11 (ENSNVIG00000012100) #9	ENSNVIG00000012110	HOXA9 (ENSNVIG00000012124) #11	HOXA7 (ENSNVIG00000012126) #12	HOXA6 (ENSNVIG00000012136) #13	HOXA5 (ENSNVIG00000012142) #14	HOXA4 (ENSNVIG00000012149) #15	HOXA3 (ENSNVIG00000012162) #16	HOXA2 (ENSNVIG00000012184) #17	HOXA1 (ENSNVIG00000012214) #18	SKAP2 (ENSNVIG00000012244) #19	SNX10 (ENSNVIG00000012303) #20	ENSNVIG00000012362 ##21	HNRNPA2B1 (ENSNVIG00000012375) #22	NFE2L3 (ENSNVIG00000012449) #23	NPVF (ENSNVIG00000012461) #24	C7orf31 (ENSNVIG00000012476) #25	CYCS (ENSNVIG00000012505) ##26	OSBPL3 (ENSNVIG00000012516) #27	GSDME (ENSNVIG00000012676) #28	PALS2 (ENSNVIG00000012778) #29	NPY (ENSNVIG00000012797) #30	STK31 (ENSNVIG00000012817) #31	FAM221A (ENSNVIG00000012920) #32	ENSNVIG00000012983	CC126 (ENSNVIG00000012995) #33	TRA2A (ENSNVIG00000013005) #34	ENSNVIG00000013044	IGF2BP3 (ENSNVIG00000013056) #35
Ursidae	ANCESTRAL SPECIES	12	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000172584.c.a	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT00940000154957.B #35
Ursus	ANCESTRAL SPECIES	31	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00940000154191.i.a	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00910000147494	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
American black bear	MODERN SPECIES	2042															ENSUAMG00000025629 ##21	HNRNPA2B1 (ENSUAMG00000025628) #22	NFE2L3 (ENSUAMG00000025627) #23
Polar bear	MODERN SPECIES	133	JAZF1 (ENSUMAG00000001899)	ENSUMAG00000001876	ENSUMAG00000001866	HIBADH (ENSUMAG00000001860)	ENSUMAG00000001853	ENSUMAG00000001814 #9	ENSUMAG00000001810	HOXA9 (ENSUMAG00000001801) #11	HOXA6 (ENSUMAG00000001790) #13	ENSUMAG00000001784 #15	HOXA1 (ENSUMAG00000001758) #18	ENSUMAG00000001750	SKAP2 (ENSUMAG00000001740) #19	SNX10 (ENSUMAG00000001732) #20	CBX3 (ENSUMAG00000001725) #21	HNRNPA2B1 (ENSUMAG00000001699) #22	ENSUMAG00000001694 #23	NPVF (ENSUMAG00000001665) #24	C7orf31 (ENSUMAG00000001572) #25	CYCS (ENSUMAG00000001559) ##26	OSBPL3 (ENSUMAG00000001527) #27	GSDME (ENSUMAG00000001516) #28	PALS2 (ENSUMAG00000001507) #29	NPY (ENSUMAG00000001496) #30	STK31 (ENSUMAG00000001224) #31	FAM221A (ENSUMAG00000001201) #32	ENSUMAG00000001194	CCDC126 (ENSUMAG00000001190) #33	ENSUMAG00000001188	TRA2A (ENSUMAG00000001181) #34	IGF2BP3 (ENSUMAG00000000428) #35
Giant Panda	MODERN SPECIES		ENSAMEG00000031450	HOXA13 (ENSAMEG00000024587) #8	HOXA11 (ENSAMEG00000027072) #9	HOXA10 (ENSAMEG00000031295) #10	HOXA9 (ENSAMEG00000005885) #11	HOXA7 (ENSAMEG00000005891) #12	HOXA6 (ENSAMEG00000005892) #13	HOXA5 (ENSAMEG00000024900) #14	ENSAMEG00000005902 #15	HOXA3 (ENSAMEG00000005904) #16	HOXA2 (ENSAMEG00000005913) #17	HOXA1 (ENSAMEG00000005924) #18	SKAP2 (ENSAMEG00000005928) #19	SNX10 (ENSAMEG00000005948) #20	ENSAMEG00000005969 ##21	ENSAMEG00000005983 #22	NFE2L3 (ENSAMEG00000006017) #23	NPVF (ENSAMEG00000006024) #24	C7orf31 (ENSAMEG00000006032) #25	ENSAMEG00000025231	CYCS (ENSAMEG00000006039) ##26	OSBPL3 (ENSAMEG00000006045) #27	GSDME (ENSAMEG00000006101) #28	PALS2 (ENSAMEG00000006125) #29	NPY (ENSAMEG00000006179) #30	ENSAMEG00000025096 #31	ENSAMEG00000009006 #31	FAM221A (ENSAMEG00000008998) #32	ENSAMEG00000026042	CCDC126 (ENSAMEG00000025403) #33	TRA2A (ENSAMEG00000003501) #34
Canidae	ANCESTRAL SPECIES	22	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000172584.c.a	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Red fox	MODERN SPECIES	12	ENSVVUG00000024762	HOXA13 (ENSVVUG00000024771) #8	HOXA11 (ENSVVUG00000024785) #9	HOXA10 (ENSVVUG00000024786) #10	HOXA9 (ENSVVUG00000024790) #11	HOXA7 (ENSVVUG00000024792) #12	HOXA6 (ENSVVUG00000024793) #13	HOXA5 (ENSVVUG00000024796) #14	ENSVVUG00000024797 #15	HOXA3 (ENSVVUG00000024799) #16	HOXA2 (ENSVVUG00000024801) #17	HOXA1 (ENSVVUG00000024810) #18	SKAP2 (ENSVVUG00000024816) #19	SNX10 (ENSVVUG00000000134) #20	CBX3 (ENSVVUG00000000259) #21	HNRNPA2B1 (ENSVVUG00000000484) #22	NFE2L3 (ENSVVUG00000000512) #23	NPVF (ENSVVUG00000000561) #24	CUNH7orf31 (ENSVVUG00000000577) #25	CYCS (ENSVVUG00000000599) ##26	OSBPL3 (ENSVVUG00000000677) #27	GSDME (ENSVVUG00000000725) #28	MPP6 (ENSVVUG00000000752) #29	ENSVVUG00000000829 #30	STK31 (ENSVVUG00000000857) #31	FAM221A (ENSVVUG00000000974) #32	CCDC126 (ENSVVUG00000001003) #33	TRA2A (ENSVVUG00000001045) #34	IGF2BP3 (ENSVVUG00000001063) #35	GPNMB (ENSVVUG00000001105) #37	KLHL7 (ENSVVUG00000001128)
Canis_lupus	ANCESTRAL SPECIES	24	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00570000080653	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000172584.c.a	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Dog	MODERN SPECIES	5	HOXA13 (ENSCAFG00845016263) #8	HOXA11 (ENSCAFG00845016202) #9	HOXA10 (ENSCAFG00845016148) #10	HOXA9 (ENSCAFG00845011412) #11	HOXA7 (ENSCAFG00845011385) #12	HOXA6 (ENSCAFG00845011371) #13	HOXA5 (ENSCAFG00845011359) #14	HOXA4 (ENSCAFG00845011344) #15	HOXA3 (ENSCAFG00845011325) #16	HOXA2 (ENSCAFG00845011307) #17	HOXA1 (ENSCAFG00845011289) #18	SKAP2 (ENSCAFG00845011216) #19	ENSCAFG00845011197	SNX10 (ENSCAFG00845011117) #20	CBX3 (ENSCAFG00845011066) #21	HNRNPA2B1 (ENSCAFG00845010976) #22	NFE2L3 (ENSCAFG00845010931) #23	ENSCAFG00845010833	NPVF (ENSCAFG00845010780) #24	C14H7orf31 (ENSCAFG00845010734) #25	CYCS (ENSCAFG00845010713) ##26	OSBPL3 (ENSCAFG00845010396) #27	GSDME (ENSCAFG00845010323) #28	MPP6 (ENSCAFG00845010118) #29	NPY (ENSCAFG00845010065) #30	STK31 (ENSCAFG00845009751) #31	CCDC126 (ENSCAFG00845009637) #33	TRA2A (ENSCAFG00845009542) #34	IGF2BP3 (ENSCAFG00845009383) #35	MALSU1 (ENSCAFG00845009341) #36	ENSCAFG00845009315 #37
Dingo	MODERN SPECIES	288	HOXA13 (ENSCAFG00020003636) #8	HOXA11 (ENSCAFG00020003610) #9	HOXA10 (ENSCAFG00020003608) #10	HOXA9 (ENSCAFG00020003604) #11	HOXA7 (ENSCAFG00020003603) #12	HOXA6 (ENSCAFG00020003596) #13	HOXA5 (ENSCAFG00020003593) #14	HOXA4 (ENSCAFG00020003583) #15	HOXA3 (ENSCAFG00020003578) #16	HOXA2 (ENSCAFG00020003576) #17	HOXA1 (ENSCAFG00020003564) #18	ENSCAFG00020003544	SKAP2 (ENSCAFG00020003533) #19	SNX10 (ENSCAFG00020003504) #20	CBX3 (ENSCAFG00020003494) #21	HNRNPA2B1 (ENSCAFG00020003488) #22	NFE2L3 (ENSCAFG00020003483) #23	NPVF (ENSCAFG00020003466) #24	C7orf31 (ENSCAFG00020003415) #25	CYCS (ENSCAFG00020003401) ##26	OSBPL3 (ENSCAFG00020003002) #27	GSDME (ENSCAFG00020002948) #28	PALS2 (ENSCAFG00020002914) #29	ENSCAFG00020002904 #30	STK31 (ENSCAFG00020002807) #31	FAM221A (ENSCAFG00020002776) #32	ENSCAFG00020002771	CCDC126 (ENSCAFG00020002769) #33	TRA2A (ENSCAFG00020002745) #34	IGF2BP3 (ENSCAFG00020002709) #35	MALSU1 (ENSCAFG00020002703) #36
Atlantogenata	ANCESTRAL SPECIES	7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405 #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Afrotheria	ANCESTRAL SPECIES	5	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00940000154431.f ##22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405 #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Tenrec	MODERN SPECIES	3012															CBX3 (ENSETEG00000018579) #21	HNRNPA2B1 (ENSETEG00000018577) #22	NFE2L3 (ENSETEG00000018575) #23
Xenarthra	ANCESTRAL SPECIES	1290														ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23
Sloth	MODERN SPECIES	13300															CBX3 (ENSCHOG00000013843) #21	HNRNPA2B1 (ENSCHOG00000013832) #22
Armadillo	MODERN SPECIES	1682														SNX10 (ENSDNOG00000045458) #20	ENSDNOG00000006250 #21	ENSDNOG00000012928 #22	NFE2L3 (ENSDNOG00000012919) #23
Theria	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Artiodactyla_a	DUPLICATION
Artiodactyla_a	DUPLICATION
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.a ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.a ##22
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES		ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573
Percora_a	ANCESTRAL SPECIES		ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573
Bovidae	ANCESTRAL SPECIES		ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573
Caprinae	DUPLICATION
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES	23	ENSGT00390000015971	ENSGT00940000156042	ENSGT00900000141099	ENSGT00940000156508	ENSGT00940000157476	ENSGT00940000161673	ENSGT00940000161000	ENSGT00390000003836	ENSGT00510000049635	ENSGT00940000156098	ENSGT00940000155406	ENSGT00940000162225	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000155918	ENSGT00940000154431.e.a.a.a.a.a.a ##22	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000161191.A	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.g	ENSGT00390000000950.c.b	ENSGT00940000163804	ENSGT00390000015073	ENSGT01020000230354.A.b	ENSGT00390000011228.b.b	ENSGT00390000007160.a.b	ENSGT00940000156380	ENSGT00940000163231
Rambouillet Sheep	MODERN SPECIES	4	COMMD3 (ENSOARG00020024334)	BMI1 (ENSOARG00020024353)	SPAG6 (ENSOARG00020024405)	PIP4K2A (ENSOARG00020024466)	ARMC3 (ENSOARG00020024507)	MSRB2 (ENSOARG00020024574)	PTF1A (ENSOARG00020024582)	ENSOARG00020024601	OTUD1 (ENSOARG00020024691)	KIAA1217 (ENSOARG00020024750)	ARHGAP21 (ENSOARG00020025002)	PRTFDC1 (ENSOARG00020025193)	ENKUR (ENSOARG00020025225)	THNSL1 (ENSOARG00020025238)	GPR158 (ENSOARG00020025256)	ENSOARG00020025314 ##22	MYO3A (ENSOARG00020025333)	GAD2 (ENSOARG00020025435)	FZD8 (ENSOARG00020025454)	OPTN (ENSOARG00020003222)	PHYH (ENSOARG00020003287)	SEPHS1 (ENSOARG00020003364)	ENSOARG00020003435	PRPF18 (ENSOARG00020003496)	FRMD4A (ENSOARG00020003547)	FAM107B (ENSOARG00020003835)	HSPA14 (ENSOARG00020003953)	SUV39H2 (ENSOARG00020004144)	DCLRE1C (ENSOARG00020004240)	MEIG1 (ENSOARG00020004468)	ENSOARG00020004485
Goat	MODERN SPECIES	4	BMI1 (ENSCHIG00000016716)	SPAG6 (ENSCHIG00000025023)	PIP4K2A (ENSCHIG00000022526)	ENSCHIG00000007754	ARMC3 (ENSCHIG00000023741)	MSRB2 (ENSCHIG00000014549)	PTF1A (ENSCHIG00000024165)	C10orf67 (ENSCHIG00000014515)	OTUD1 (ENSCHIG00000011814)	KIAA1217 (ENSCHIG00000022589)	ARHGAP21 (ENSCHIG00000018776)	PRTFDC1 (ENSCHIG00000019326)	ENKUR (ENSCHIG00000009363)	GPR158 (ENSCHIG00000025773)	ENSCHIG00000013726	ENSCHIG00000011148 ##22	MYO3A (ENSCHIG00000015900)	GAD2 (ENSCHIG00000021003)	FZD8 (ENSCHIG00000026810)	OPTN (ENSCHIG00000017855)	MCM10 (ENSCHIG00000021952)	UCMA (ENSCHIG00000025422)	PHYH (ENSCHIG00000022569)	SEPHS1 (ENSCHIG00000027098)	BEND7 (ENSCHIG00000018500)	PRPF18 (ENSCHIG00000000499)	FRMD4A (ENSCHIG00000011717)	ENSCHIG00000021073	CDNF (ENSCHIG00000019216)	HSPA14 (ENSCHIG00000022952)	ENSCHIG00000020944
Caprinae	ANCESTRAL SPECIES	3	ENSGT01030000234515.a.b.b	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a.a.b ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a.d	ENSGT01060000248544.a.a.b.a.a.c	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573
Goat	MODERN SPECIES	26	CERS4 (ENSCHIG00000006098)	ENSCHIG00000021021	NDUFA7 (ENSCHIG00000009187)	RPS28 (ENSCHIG00000017787)	KANK3 (ENSCHIG00000012453)	ANGPTL4 (ENSCHIG00000023643)	ENSCHIG00000022426	ENSCHIG00000016628	HNRNPM (ENSCHIG00000026313)	PRAM1 (ENSCHIG00000006566)	ZNF414 (ENSCHIG00000003887)	MYO1F (ENSCHIG00000015009)	ADAMTS10 (ENSCHIG00000025021)	ACTL9 (ENSCHIG00000009183)	OR2Z1 (ENSCHIG00000009977)	ENSCHIG00000015823 ##22	ENSCHIG00000015838	ENSCHIG00000022235	ENSCHIG00000026329	ADGRE1 (ENSCHIG00000021647)	VAV1 (ENSCHIG00000011155)	SH2D3A (ENSCHIG00000025393)	TRIP10 (ENSCHIG00000022584)	GPR108 (ENSCHIG00000009700)	C3 (ENSCHIG00000008320)	TNFSF14 (ENSCHIG00000020880)	ENSCHIG00000026611	ENSCHIG00000004302	TUBB4A (ENSCHIG00000020195)	DENND1C (ENSCHIG00000017569)	CRB3 (ENSCHIG00000023021)
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00940000154431.e.a.a.a.a.b ##22	ENSGT00730000111029.e.b	ENSGT00950000183005.b.c.b.`b	ENSGT00940000160844	ENSGT00940000154431.e.a.a.b.a.c ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170
Rambouillet Sheep	MODERN SPECIES	21	FBN3 (ENSOARG00020011123)	CERS4 (ENSOARG00020012847)	ENSOARG00020012973	NDUFA7 (ENSOARG00020013027)	RPS28 (ENSOARG00020013105)	KANK3 (ENSOARG00020013158)	ANGPTL4 (ENSOARG00020013214)	RAB11B (ENSOARG00020013395)	ENSOARG00020013505	HNRNPM (ENSOARG00020013599)	ZNF414 (ENSOARG00020013759)	MYO1F (ENSOARG00020013845)	ADAMTS10 (ENSOARG00020014322)	ACTL9 (ENSOARG00020014551)	OR2Z1 (ENSOARG00020014568)	ENSOARG00020014583 ##22	ENSOARG00020014632	ENSOARG00020014669 ##22	ENSOARG00020014729	ENSOARG00020014890	ENSOARG00020014938	ENSOARG00020015222	VAV1 (ENSOARG00020015323)	SH2D3A (ENSOARG00020016038)	TRIP10 (ENSOARG00020016180)	GPR108 (ENSOARG00020016672)	C3 (ENSOARG00020016763)	ENSOARG00020016803	ENSOARG00020016859	ENSOARG00020017608	ENSOARG00020018946
Bovinae	ANCESTRAL SPECIES	2	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b
American bison	MODERN SPECIES	3349	ENSBBBG00000008608	NDUFA7 (ENSBBBG00000019425)	ENSBBBG00000019442	KANK3 (ENSBBBG00000019486)	ANGPTL4 (ENSBBBG00000005269)	ENSBBBG00000005273	MARCHF2 (ENSBBBG00000019538)	HNRNPM (ENSBBBG00000019587)	PRAM1 (ENSBBBG00000019627)	ZNF414 (ENSBBBG00000019648)	MYO1F (ENSBBBG00000005170)	ENSBBBG00000005155	ENSBBBG00000019753	ACTL9 (ENSBBBG00000019764)	OR2Z1 (ENSBBBG00000005355)	ENSBBBG00000019780 ##22	ENSBBBG00000005363	ENSBBBG00000019818	ENSBBBG00000019840	ENSBBBG00000019855	ADGRE1 (ENSBBBG00000007466)	VAV1 (ENSBBBG00000020126)	SH2D3A (ENSBBBG00000020159)	TRIP10 (ENSBBBG00000005456)	ENSBBBG00000005466	C3 (ENSBBBG00000008781)	TNFSF14 (ENSBBBG00000007961)	CD70 (ENSBBBG00000020534)	ENSBBBG00000007050	TUBB4A (ENSBBBG00000000506)	ENSBBBG00000020590
Bos	ANCESTRAL SPECIES	3	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b
Bos_a	ANCESTRAL SPECIES	2	ENSGT00910000144227.s.a.h	ENSGT00390000006553	ENSGT00910000144227.s.b	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b
Domestic yak	MODERN SPECIES	27	CERS4 (ENSBGRG00000024900)	ENSBGRG00000025012	NDUFA7 (ENSBGRG00000025025)	ENSBGRG00000025044	KANK3 (ENSBGRG00000025061)	ANGPTL4 (ENSBGRG00000025096)	ENSBGRG00000025122	MARCHF2 (ENSBGRG00000025151)	HNRNPM (ENSBGRG00000025188)	ZNF414 (ENSBGRG00000025292)	MYO1F (ENSBGRG00000025321)	ADAMTS10 (ENSBGRG00000025401)	ENSBGRG00000025413	ACTL9 (ENSBGRG00000025424)	OR2Z1 (ENSBGRG00000025427)	ENSBGRG00000025442 ##22	ENSBGRG00000025450	ENSBGRG00000025464	ENSBGRG00000025483	ADGRE1 (ENSBGRG00000025588)	VAV1 (ENSBGRG00000025777)	SH2D3A (ENSBGRG00000025904)	TRIP10 (ENSBGRG00000025920)	GPR108 (ENSBGRG00000025958)	C3 (ENSBGRG00000025983)	TNFSF14 (ENSBGRG00000025997)	CD70 (ENSBGRG00000026005)	ENSBGRG00000026014	ENSBGRG00000026022	TUBB4A (ENSBGRG00000026030)	ENSBGRG00000000364
Bos_b	ANCESTRAL SPECIES	2	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00390000018316.b.b.h	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005005696	NDUFA7 (ENSBIXG00005010207)	RPS28 (ENSBIXG00005010232)	KANK3 (ENSBIXG00005000822)	ANGPTL4 (ENSBIXG00005010288)	ENSBIXG00005010314	MARCHF2 (ENSBIXG00005000850)	HNRNPM (ENSBIXG00005010359)	PRAM1 (ENSBIXG00005010383)	ZNF414 (ENSBIXG00005010399)	MYO1F (ENSBIXG00005000747)	ADAMTS10 (ENSBIXG00005000887)	NFILZ (ENSBIXG00005010493)	ACTL9 (ENSBIXG00005010501)	OR2Z1 (ENSBIXG00005000894)	ENSBIXG00005010532 ##22	ENSBIXG00005000932	ENSBIXG00005010956	VAV1 (ENSBIXG00005001021)	SH2D3A (ENSBIXG00005011216)	TRIP10 (ENSBIXG00005001055)	GPR108 (ENSBIXG00005011263)	C3 (ENSBIXG00005001069)	TNFSF14 (ENSBIXG00005011303)	CD70 (ENSBIXG00005011321)	TNFSF9 (ENSBIXG00005001080)	ENSBIXG00005001088	ENSBIXG00005011344	TUBB4A (ENSBIXG00005001091)	DENND1C (ENSBIXG00005011411)	CRB3 (ENSBIXG00005000466)
Cow	MODERN SPECIES	26	CERS4 (ENSBTAG00000003434)	CD320 (ENSBTAG00000004403)	NDUFA7 (ENSBTAG00000052280)	RPS28 (ENSBTAG00000002468)	KANK3 (ENSBTAG00000002469)	ANGPTL4 (ENSBTAG00000002473)	RAB11B (ENSBTAG00000002475)	MARCHF2 (ENSBTAG00000021036)	HNRNPM (ENSBTAG00000021039)	PRAM1 (ENSBTAG00000021041)	ZNF414 (ENSBTAG00000007660)	MYO1F (ENSBTAG00000007661)	ADAMTS10 (ENSBTAG00000014207)	ACTL9 (ENSBTAG00000011255)	OR2Z1 (ENSBTAG00000051841)	ENSBTAG00000054873 ##22	ENSBTAG00000053612 ##22	ENSBTAG00000052571	ENSBTAG00000049797	ENSBTAG00000038981	ADGRE1 (ENSBTAG00000007901)	VAV1 (ENSBTAG00000039160)	SH2D3A (ENSBTAG00000013857)	TRIP10 (ENSBTAG00000047424)	GPR108 (ENSBTAG00000017291)	C3 (ENSBTAG00000017280)	TNFSF14 (ENSBTAG00000012223)	CD70 (ENSBTAG00000009752)	TNFSF9 (ENSBTAG00000046266)	ENSBTAG00000054505	TUBB4A (ENSBTAG00000021013)
Siberian musk deer	MODERN SPECIES	99	FBN3 (ENSMMSG00000003200)	CERS4 (ENSMMSG00000003402)	ENSMMSG00000003437	NDUFA7 (ENSMMSG00000003447)	RPS28 (ENSMMSG00000003457)	KANK3 (ENSMMSG00000003473)	ANGPTL4 (ENSMMSG00000003494)	RAB11B (ENSMMSG00000003516)	MARCHF2 (ENSMMSG00000003527)	ENSMMSG00000003560	ZNF414 (ENSMMSG00000003602)	MYO1F (ENSMMSG00000003634)	ADAMTS10 (ENSMMSG00000003662)	ACTL9 (ENSMMSG00000003682)	OR2Z1 (ENSMMSG00000003688)	ENSMMSG00000003695 ##22	ENSMMSG00000003703	ENSMMSG00000003728	ENSMMSG00000006263	ENSMMSG00000006306	ADGRE1 (ENSMMSG00000006398)	ENSMMSG00000006913	VAV1 (ENSMMSG00000006975)	SH2D3A (ENSMMSG00000007295)	TRIP10 (ENSMMSG00000007373)	GPR108 (ENSMMSG00000007474)	C3 (ENSMMSG00000007580)	TNFSF14 (ENSMMSG00000007629)	CD70 (ENSMMSG00000007672)	ENSMMSG00000007708	ENSMMSG00000007741
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000010861	NDUFA7 (ENSCHYG00000010918)	RPS28 (ENSCHYG00000010962)	KANK3 (ENSCHYG00000011010)	ANGPTL4 (ENSCHYG00000011094)	RAB11B (ENSCHYG00000011222)	MARCHF2 (ENSCHYG00000011284)	HNRNPM (ENSCHYG00000011387)	ENSCHYG00000011848	ZNF414 (ENSCHYG00000011878)	MYO1F (ENSCHYG00000012026)	ADAMTS10 (ENSCHYG00000012363)	NFILZ (ENSCHYG00000012650)	ACTL9 (ENSCHYG00000012673)	OR2Z1 (ENSCHYG00000012698)	ENSCHYG00000012730 ##22	ENSCHYG00000012744 ##22	ENSCHYG00000012759	ENSCHYG00000012824	ENSCHYG00000013160	ENSCHYG00000013324	ADGRE1 (ENSCHYG00000013389)	VAV1 (ENSCHYG00000013476)	SH2D3A (ENSCHYG00000014306)	TRIP10 (ENSCHYG00000014436)	GPR108 (ENSCHYG00000014861)	C3 (ENSCHYG00000015491)	TNFSF14 (ENSCHYG00000016323)	CD70 (ENSCHYG00000016394)	ENSCHYG00000016453	ENSCHYG00000016483
Pecora	ANCESTRAL SPECIES		ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a
Percora_a	ANCESTRAL SPECIES		ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a
Bovidae	ANCESTRAL SPECIES		ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a
Bovinae	ANCESTRAL SPECIES	2	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573
Bos	ANCESTRAL SPECIES	3	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573
Bos_a	ANCESTRAL SPECIES	2	ENSGT00390000006553	ENSGT00910000144227.s.b	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00950000183005.b.c.b.ab	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573
Wild yak	MODERN SPECIES	346	CERS4 (ENSBMUG00000025834)	ENSBMUG00000025817	ENSBMUG00000025808	NDUFA7 (ENSBMUG00000025804)	KANK3 (ENSBMUG00000025802)	ANGPTL4 (ENSBMUG00000025787)	ENSBMUG00000025784	MARCHF2 (ENSBMUG00000025779)	HNRNPM (ENSBMUG00000025771)	PRAM1 (ENSBMUG00000025757)	ZNF414 (ENSBMUG00000025755)	MYO1F (ENSBMUG00000025738)	ADAMTS10 (ENSBMUG00000025711)	ACTL9 (ENSBMUG00000025640)	OR2Z1 (ENSBMUG00000025633)	ENSBMUG00000025627 ##22	ENSBMUG00000025621	ENSBMUG00000025618	ENSBMUG00000025598	ADGRE1 (ENSBMUG00000025559)	VAV1 (ENSBMUG00000025463)	SH2D3A (ENSBMUG00000025416)	TRIP10 (ENSBMUG00000025404)	GPR108 (ENSBMUG00000025394)	C3 (ENSBMUG00000025382)
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00390000018316.b.b.h	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573
Cow	MODERN SPECIES	26	CD320 (ENSBTAG00000004403)	NDUFA7 (ENSBTAG00000052280)	RPS28 (ENSBTAG00000002468)	KANK3 (ENSBTAG00000002469)	ANGPTL4 (ENSBTAG00000002473)	RAB11B (ENSBTAG00000002475)	MARCHF2 (ENSBTAG00000021036)	HNRNPM (ENSBTAG00000021039)	PRAM1 (ENSBTAG00000021041)	ZNF414 (ENSBTAG00000007660)	MYO1F (ENSBTAG00000007661)	ADAMTS10 (ENSBTAG00000014207)	ACTL9 (ENSBTAG00000011255)	OR2Z1 (ENSBTAG00000051841)	ENSBTAG00000054873 ##22	ENSBTAG00000053612 ##22	ENSBTAG00000052571	ENSBTAG00000049797	ENSBTAG00000038981	ADGRE1 (ENSBTAG00000007901)	VAV1 (ENSBTAG00000039160)	SH2D3A (ENSBTAG00000013857)	TRIP10 (ENSBTAG00000047424)	GPR108 (ENSBTAG00000017291)	C3 (ENSBTAG00000017280)	TNFSF14 (ENSBTAG00000012223)	CD70 (ENSBTAG00000009752)	TNFSF9 (ENSBTAG00000046266)	ENSBTAG00000054505	TUBB4A (ENSBTAG00000021013)	ENSBTAG00000051810
Caprinae	ANCESTRAL SPECIES	3	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a.a.b ##22	ENSGT00940000154431.e.a.a.a.b ##22	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a.d	ENSGT01060000248544.a.a.b.a.a.c	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020012973	NDUFA7 (ENSOARG00020013027)	RPS28 (ENSOARG00020013105)	KANK3 (ENSOARG00020013158)	ANGPTL4 (ENSOARG00020013214)	RAB11B (ENSOARG00020013395)	ENSOARG00020013505	HNRNPM (ENSOARG00020013599)	ZNF414 (ENSOARG00020013759)	MYO1F (ENSOARG00020013845)	ADAMTS10 (ENSOARG00020014322)	ACTL9 (ENSOARG00020014551)	OR2Z1 (ENSOARG00020014568)	ENSOARG00020014583 ##22	ENSOARG00020014632	ENSOARG00020014669 ##22	ENSOARG00020014729	ENSOARG00020014890	ENSOARG00020014938	ENSOARG00020015222	VAV1 (ENSOARG00020015323)	SH2D3A (ENSOARG00020016038)	TRIP10 (ENSOARG00020016180)	GPR108 (ENSOARG00020016672)	C3 (ENSOARG00020016763)	ENSOARG00020016803	ENSOARG00020016859	ENSOARG00020017608	ENSOARG00020018946	CD70 (ENSOARG00020019022)	ENSOARG00020019063
Yarkand deer	MODERN SPECIES	32	NDUFA7 (ENSCHYG00000010918)	RPS28 (ENSCHYG00000010962)	KANK3 (ENSCHYG00000011010)	ANGPTL4 (ENSCHYG00000011094)	RAB11B (ENSCHYG00000011222)	MARCHF2 (ENSCHYG00000011284)	HNRNPM (ENSCHYG00000011387)	ENSCHYG00000011848	ZNF414 (ENSCHYG00000011878)	MYO1F (ENSCHYG00000012026)	ADAMTS10 (ENSCHYG00000012363)	NFILZ (ENSCHYG00000012650)	ACTL9 (ENSCHYG00000012673)	OR2Z1 (ENSCHYG00000012698)	ENSCHYG00000012730 ##22	ENSCHYG00000012744 ##22	ENSCHYG00000012759	ENSCHYG00000012824	ENSCHYG00000013160	ENSCHYG00000013324	ADGRE1 (ENSCHYG00000013389)	VAV1 (ENSCHYG00000013476)	SH2D3A (ENSCHYG00000014306)	TRIP10 (ENSCHYG00000014436)	GPR108 (ENSCHYG00000014861)	C3 (ENSCHYG00000015491)	TNFSF14 (ENSCHYG00000016323)	CD70 (ENSCHYG00000016394)	ENSCHYG00000016453	ENSCHYG00000016483	TUBB4A (ENSCHYG00000016548)
Camelidae	ANCESTRAL SPECIES	61	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000155404	ENSGT00950000183005.b.c.b	ENSGT00940000154431.e.a.a.a ##22	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428
Arabian camel	MODERN SPECIES	14	TRAPPC5 (ENSCDRG00005014599)	RETN (ENSCDRG00005014619)	STXBP2 (ENSCDRG00005014709)	PCP2 (ENSCDRG00005015159)	PET100 (ENSCDRG00005015254)	XAB2 (ENSCDRG00005015338)	CAMSAP3 (ENSCDRG00005015416)	PNPLA6 (ENSCDRG00005015644)	MCOLN1 (ENSCDRG00005016454)	ZNF358 (ENSCDRG00005016504)	TEX45 (ENSCDRG00005016523)	PEX11G (ENSCDRG00005016590)	ARHGEF18 (ENSCDRG00005016630)	INSR (ENSCDRG00005016879)	ENSCDRG00005017114	ENSCDRG00005017145 ##22	ENSCDRG00005017166	ENSCDRG00005017246	ADGRE1 (ENSCDRG00005017351)	VAV1 (ENSCDRG00005017664)	SH2D3A (ENSCDRG00005017906)	TRIP10 (ENSCDRG00005017930)	GPR108 (ENSCDRG00005017978)	C3 (ENSCDRG00005018821)	TNFSF14 (ENSCDRG00005021938)	CD70 (ENSCDRG00005021939)	TUBB4A (ENSCDRG00005021940)	DENND1C (ENSCDRG00005021941)	CRB3 (ENSCDRG00005021942)	SLC25A23 (ENSCDRG00005021943)	SLC25A41 (ENSCDRG00005021944)
Artiodactyla_a	DUPLICATION
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.a ##22
Camelidae	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.a ##22
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	14	NDUFA7 (ENSCDRG00005011397)	RPS28 (ENSCDRG00005011369)	KANK3 (ENSCDRG00005011269)	ANGPTL4 (ENSCDRG00005011142)	RAB11B (ENSCDRG00005011000)	MARCHF2 (ENSCDRG00005010915)	HNRNPM (ENSCDRG00005010751)	PRAM1 (ENSCDRG00005010701)	ZNF414 (ENSCDRG00005010644)	MYO1F (ENSCDRG00005008914)	ADAMTS10 (ENSCDRG00005014083)	ACTL9 (ENSCDRG00005014023)	OR2Z1 (ENSCDRG00005013991)	ZNF558 (ENSCDRG00005013914)	ENSCDRG00005013882	ENSCDRG00005013818 ##22	ENSCDRG00005013776 ##22	ACP5 (ENSCDRG00005013727)	ELOF1 (ENSCDRG00005013660)	CNN1 (ENSCDRG00005013601)	ECSIT (ENSCDRG00005013448)	ZNF653 (ENSCDRG00005013182)	ELAVL3 (ENSCDRG00005013106)	ENSCDRG00005013045	PRKCSH (ENSCDRG00005012807)	ODAD3 (ENSCDRG00005012731)	RGL3 (ENSCDRG00005012652)	EPOR (ENSCDRG00005012547)	SWSAP1 (ENSCDRG00005012518)	PLPPR2 (ENSCDRG00005012344)	CCDC159 (ENSCDRG00005012172)
Arabian camel	MODERN SPECIES	14	RPS28 (ENSCDRG00005011369)	KANK3 (ENSCDRG00005011269)	ANGPTL4 (ENSCDRG00005011142)	RAB11B (ENSCDRG00005011000)	MARCHF2 (ENSCDRG00005010915)	HNRNPM (ENSCDRG00005010751)	PRAM1 (ENSCDRG00005010701)	ZNF414 (ENSCDRG00005010644)	MYO1F (ENSCDRG00005008914)	ADAMTS10 (ENSCDRG00005014083)	ACTL9 (ENSCDRG00005014023)	OR2Z1 (ENSCDRG00005013991)	ZNF558 (ENSCDRG00005013914)	ENSCDRG00005013882	ENSCDRG00005013818 ##22	ENSCDRG00005013776 ##22	ACP5 (ENSCDRG00005013727)	ELOF1 (ENSCDRG00005013660)	CNN1 (ENSCDRG00005013601)	ECSIT (ENSCDRG00005013448)	ZNF653 (ENSCDRG00005013182)	ELAVL3 (ENSCDRG00005013106)	ENSCDRG00005013045	PRKCSH (ENSCDRG00005012807)	ODAD3 (ENSCDRG00005012731)	RGL3 (ENSCDRG00005012652)	EPOR (ENSCDRG00005012547)	SWSAP1 (ENSCDRG00005012518)	PLPPR2 (ENSCDRG00005012344)	CCDC159 (ENSCDRG00005012172)	TMEM205 (ENSCDRG00005012111)
Artiodactyla_b	DUPLICATION
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.a.c ##22
Pecora	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.a.c ##22
Percora_a	ANCESTRAL SPECIES		ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT00940000159680	ENSGT00390000000053	ENSGT00390000016735	ENSGT00940000154431.e.a.a.b.a.c ##22	ENSGT00940000160844	ENSGT00950000183005.b.c.b.`b	ENSGT00940000155404	ENSGT00940000154146.b.b.b	ENSGT00940000157375	ENSGT00390000000427	ENSGT00390000014215	ENSGT00940000162948	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00390000016884	ENSGT00940000162025	ENSGT00940000160045
Bovidae	ANCESTRAL SPECIES		ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT00940000159680	ENSGT00390000000053	ENSGT00390000016735	ENSGT00940000154431.e.a.a.b.a.c ##22	ENSGT00940000160844	ENSGT00950000183005.b.c.b.`b	ENSGT00730000111029.e.b	ENSGT00940000155404	ENSGT00940000154146.b.b.b	ENSGT00940000157375	ENSGT00390000000427	ENSGT00390000014215	ENSGT00940000162948	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00390000016884	ENSGT00940000162025
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT00940000159680	ENSGT00390000000053	ENSGT00390000016735	ENSGT00940000154431.e.a.a.b.a.c ##22	ENSGT00950000183069.b	ENSGT00940000160844	ENSGT00730000111029.e.b	ENSGT00950000183005.b.c.b.`b	ENSGT00940000155404	ENSGT00940000154146.b.b.b	ENSGT00940000157375	ENSGT00390000000427	ENSGT00390000014215	ENSGT00940000162948	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00390000016884
Bos	ANCESTRAL SPECIES	3	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT00940000159680	ENSGT00390000000053	ENSGT00390000016735	ENSGT00940000154431.e.a.a.b.a.c ##22	ENSGT00940000160844	ENSGT00730000111029.e.b	ENSGT00950000183005.b.c.b.`b	ENSGT00940000155404	ENSGT00940000154146.b.b.b	ENSGT00940000157375	ENSGT00390000000427	ENSGT00390000014215	ENSGT00940000162948	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00390000016884.c.a	ENSGT00940000162025
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT00940000159680	ENSGT00390000000053	ENSGT00390000016735	ENSGT00940000154431.e.a.a.b.a.c ##22	ENSGT00940000160844	ENSGT00730000111029.e.b	ENSGT00950000183005.b.c.b.`b	ENSGT00940000155404	ENSGT00940000157375	ENSGT00390000000427	ENSGT00390000014215	ENSGT00940000162948	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00390000016884.c.a	ENSGT00940000162025	ENSGT00940000160045
Hybrid Bos Indicus	MODERN SPECIES	26	RAB3D (ENSBIXG00005002375)	TMEM205 (ENSBIXG00005028717)	CCDC159 (ENSBIXG00005028811)	PLPPR2 (ENSBIXG00005028866)	SWSAP1 (ENSBIXG00005002261)	EPOR (ENSBIXG00005028886)	RGL3 (ENSBIXG00005005047)	ODAD3 (ENSBIXG00005005087)	PRKCSH (ENSBIXG00005029013)	ELAVL3 (ENSBIXG00005005114)	ZNF653 (ENSBIXG00005007608)	ECSIT (ENSBIXG00005002005)	CNN1 (ENSBIXG00005005140)	ENSBIXG00005005151	ACP5 (ENSBIXG00005029121)	ENSBIXG00005029129 ##22	ZNF558 (ENSBIXG00005001808)	ENSBIXG00005001780	ENSBIXG00005001771	INSR (ENSBIXG00005001709)	ARHGEF18 (ENSBIXG00005029209)	PEX11G (ENSBIXG00005001595)	TEX45 (ENSBIXG00005005271)	ZNF358 (ENSBIXG00005000371)	MCOLN1 (ENSBIXG00005009077)	PNPLA6 (ENSBIXG00005009237)	CAMSAP3 (ENSBIXG00005000457)	XAB2 (ENSBIXG00005009311)	PCP2 (ENSBIXG00005009330)	ENSBIXG00005009355	STXBP2 (ENSBIXG00005009382)
Cow	MODERN SPECIES	26	RAB3D (ENSBTAG00000002148)	TMEM205 (ENSBTAG00000016429)	CCDC159 (ENSBTAG00000032292)	PLPPR2 (ENSBTAG00000008192)	SWSAP1 (ENSBTAG00000008196)	EPOR (ENSBTAG00000008197)	RGL3 (ENSBTAG00000008198)	ODAD3 (ENSBTAG00000008201)	PRKCSH (ENSBTAG00000008202)	ELAVL3 (ENSBTAG00000014412)	ZNF653 (ENSBTAG00000014415)	ECSIT (ENSBTAG00000015049)	CNN1 (ENSBTAG00000011207)	ELOF1 (ENSBTAG00000038151)	ACP5 (ENSBTAG00000004826)	ENSBTAG00000038680 ##22	ZNF557 (ENSBTAG00000030929)	ENSBTAG00000046336	ENSBTAG00000047612	INSR (ENSBTAG00000012687)	ARHGEF18 (ENSBTAG00000040507)	PEX11G (ENSBTAG00000018894)	TEX45 (ENSBTAG00000002629)	ZNF358 (ENSBTAG00000046837)	MCOLN1 (ENSBTAG00000005592)	PNPLA6 (ENSBTAG00000032137)	CAMSAP3 (ENSBTAG00000011356)	XAB2 (ENSBTAG00000011360)	PET100 (ENSBTAG00000048824)	PCP2 (ENSBTAG00000008906)	STXBP2 (ENSBTAG00000009178)
Bos_a	ANCESTRAL SPECIES	2	ENSGT00510000049338	ENSGT00940000157552	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT00940000159680	ENSGT00390000000053	ENSGT00390000016735	ENSGT00940000154431.e.a.a.b.a.c ##22	ENSGT00940000160844	ENSGT00730000111029.e.b	ENSGT00950000183005.b.c.b.`b	ENSGT00940000155404	ENSGT00940000154146.b.b.b	ENSGT00940000157375	ENSGT00390000000427	ENSGT00390000014215	ENSGT00940000162948	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00390000016884.c.a	ENSGT00940000162025
Domestic yak	MODERN SPECIES	27	TSPAN16 (ENSBGRG00000011677)	RAB3D (ENSBGRG00000011945)	ENSBGRG00000012091	PLPPR2 (ENSBGRG00000012325)	SWSAP1 (ENSBGRG00000012516)	EPOR (ENSBGRG00000012531)	ENSBGRG00000012601	ODAD3 (ENSBGRG00000012691)	PRKCSH (ENSBGRG00000013054)	ELAVL3 (ENSBGRG00000013231)	ZNF653 (ENSBGRG00000013329)	ECSIT (ENSBGRG00000013448)	CNN1 (ENSBGRG00000013580)	ELOF1 (ENSBGRG00000013781)	ACP5 (ENSBGRG00000013885)	ENSBGRG00000014054 ##22	ZNF558 (ENSBGRG00000014085)	ENSBGRG00000014240	ENSBGRG00000014264	INSR (ENSBGRG00000014314)	ARHGEF18 (ENSBGRG00000014851)	PEX11G (ENSBGRG00000015477)	TEX45 (ENSBGRG00000015591)	ZNF358 (ENSBGRG00000015732)	MCOLN1 (ENSBGRG00000015800)	PNPLA6 (ENSBGRG00000016196)	ENSBGRG00000017526	ENSBGRG00000017610	XAB2 (ENSBGRG00000017678)	ENSBGRG00000018074	PCP2 (ENSBGRG00000018290)
Wild yak	MODERN SPECIES	347	RAB3D (ENSBMUG00000000442)	CCDC159 (ENSBMUG00000000394)	PLPPR2 (ENSBMUG00000000352)	SWSAP1 (ENSBMUG00000000331)	EPOR (ENSBMUG00000000317)	RGL3 (ENSBMUG00000000298)	ODAD3 (ENSBMUG00000000250)	PRKCSH (ENSBMUG00000000129)	ELAVL3 (ENSBMUG00000026073)	ZNF653 (ENSBMUG00000026068)	ECSIT (ENSBMUG00000026061)	CNN1 (ENSBMUG00000026059)	ELOF1 (ENSBMUG00000026057)	ACP5 (ENSBMUG00000026050)	ENSBMUG00000026048	ENSBMUG00000026045 ##22	ENSBMUG00000026043	ZNF558 (ENSBMUG00000026040)	ENSBMUG00000026036	ENSBMUG00000026035	INSR (ENSBMUG00000026033)	ENSBMUG00000026032	ARHGEF18 (ENSBMUG00000026030)	PEX11G (ENSBMUG00000026029)	ENSBMUG00000026027	ENSBMUG00000026024	MCOLN1 (ENSBMUG00000026020)	PNPLA6 (ENSBMUG00000026008)	ENSBMUG00000026000	XAB2 (ENSBMUG00000025998)	ENSBMUG00000025997
American bison	MODERN SPECIES	3349	ENSBBBG00000008561	ENSBBBG00000017753	CCDC159 (ENSBBBG00000017776)	PLPPR2 (ENSBBBG00000017792)	SWSAP1 (ENSBBBG00000004385)	EPOR (ENSBBBG00000017814)	RGL3 (ENSBBBG00000017909)	ODAD3 (ENSBBBG00000017977)	PRKCSH (ENSBBBG00000018010)	ELAVL3 (ENSBBBG00000007581)	ZNF653 (ENSBBBG00000018040)	ENSBBBG00000018064	CNN1 (ENSBBBG00000018096)	ELOF1 (ENSBBBG00000018120)	ACP5 (ENSBBBG00000018149)	ENSBBBG00000004463 ##22	ENSBBBG00000018189	ZNF558 (ENSBBBG00000008764)	ENSBBBG00000018240	ENSBBBG00000018257	INSR (ENSBBBG00000018333)	ARHGEF18 (ENSBBBG00000004493)	PEX11G (ENSBBBG00000018399)	TEX45 (ENSBBBG00000004501)	ZNF358 (ENSBBBG00000004503)	MCOLN1 (ENSBBBG00000004511)	PNPLA6 (ENSBBBG00000018732)	CAMSAP3 (ENSBBBG00000004734)	XAB2 (ENSBBBG00000018857)	PET100 (ENSBBBG00000018886)	PCP2 (ENSBBBG00000004777)
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000157552	ENSGT00390000016298.a	ENSGT00390000008201	ENSGT00940000158145	ENSGT00390000007170	ENSGT00940000160315	ENSGT00940000161935	ENSGT00940000153116.C.b	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000160257	ENSGT00390000005147	ENSGT00940000159680	ENSGT00390000000053	ENSGT00390000016735	ENSGT00940000154431.e.a.a.b.a.c ##22	ENSGT00940000160844	ENSGT00950000183005.b.c.b.`b	ENSGT00730000111029.e.b	ENSGT00940000154431.e.a.a.a.a.b ##22	ENSGT00940000155404	ENSGT00940000154146.b.b.b	ENSGT00940000157375	ENSGT00390000000427	ENSGT00390000014215	ENSGT00940000162948	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00390000016884
Goat	MODERN SPECIES	26	TSPAN16 (ENSCHIG00000010405)	RAB3D (ENSCHIG00000014720)	TMEM205 (ENSCHIG00000007462)	CCDC159 (ENSCHIG00000025060)	PLPPR2 (ENSCHIG00000008665)	SWSAP1 (ENSCHIG00000010252)	EPOR (ENSCHIG00000008595)	RGL3 (ENSCHIG00000017717)	PRKCSH (ENSCHIG00000013274)	ELAVL3 (ENSCHIG00000003436)	ZNF653 (ENSCHIG00000012969)	ECSIT (ENSCHIG00000021558)	CNN1 (ENSCHIG00000019758)	ELOF1 (ENSCHIG00000012527)	ACP5 (ENSCHIG00000014322)	ENSCHIG00000026095 ##22	ZNF558 (ENSCHIG00000025659)	ENSCHIG00000019523	INSR (ENSCHIG00000014171)	ENSCHIG00000013820	ARHGEF18 (ENSCHIG00000014970)	PEX11G (ENSCHIG00000008993)	TEX45 (ENSCHIG00000021310)	ZNF358 (ENSCHIG00000009326)	MCOLN1 (ENSCHIG00000004859)	PNPLA6 (ENSCHIG00000012296)	CAMSAP3 (ENSCHIG00000006791)	XAB2 (ENSCHIG00000011512)	ENSCHIG00000025309	ENSCHIG00000020226	ZNF333 (ENSCHIG00000014600)
Rambouillet Sheep	MODERN SPECIES	15	GNAL (ENSOARG00020023323)	IMPA2 (ENSOARG00020023443)	CIDEA (ENSOARG00020023476)	TUBB6 (ENSOARG00020023513)	AFG3L2 (ENSOARG00020023557)	PRELID3A (ENSOARG00020023717)	SPIRE1 (ENSOARG00020023807)	CEP76 (ENSOARG00020024273)	PSMG2 (ENSOARG00020024375)	PTPN2 (ENSOARG00020024400)	LDLRAD4 (ENSOARG00020024567)	FAM210A (ENSOARG00020024589)	ENSOARG00020024610	MC5R (ENSOARG00020024660)	MC2R (ENSOARG00020024677)	ENSOARG00020024696 ##22	SETBP1 (ENSOARG00020024713)	SLC14A2 (ENSOARG00020024734)	SLC14A1 (ENSOARG00020024788)	SIGLEC15 (ENSOARG00020024818)	EPG5 (ENSOARG00020024844)	ENSOARG00020024920	PSTPIP2 (ENSOARG00020024936)	ATP5F1A (ENSOARG00020025008)	HAUS1 (ENSOARG00020025030)	C18orf25 (ENSOARG00020025062)	RNF165 (ENSOARG00020006346)	LOXHD1 (ENSOARG00020006581)	ST8SIA5 (ENSOARG00020009312)	PIAS2 (ENSOARG00020009642)	KATNAL2 (ENSOARG00020009912)
Siberian musk deer	MODERN SPECIES	99	TMEM205 (ENSMMSG00000001291)	CCDC159 (ENSMMSG00000001312)	PLPPR2 (ENSMMSG00000001348)	SWSAP1 (ENSMMSG00000001378)	EPOR (ENSMMSG00000001392)	RGL3 (ENSMMSG00000001453)	ODAD3 (ENSMMSG00000001498)	PRKCSH (ENSMMSG00000001600)	ELAVL3 (ENSMMSG00000001618)	ZNF653 (ENSMMSG00000001627)	ECSIT (ENSMMSG00000001650)	CNN1 (ENSMMSG00000001681)	ENSMMSG00000001700	ACP5 (ENSMMSG00000001717)	ENSMMSG00000001726	ENSMMSG00000001738 ##22	ZNF558 (ENSMMSG00000001749)	ENSMMSG00000001771	ENSMMSG00000001779	INSR (ENSMMSG00000001802)	ENSMMSG00000001857	ENSMMSG00000001865	ARHGEF18 (ENSMMSG00000001884)	PEX11G (ENSMMSG00000001906)	TEX45 (ENSMMSG00000001917)	ZNF358 (ENSMMSG00000001933)	MCOLN1 (ENSMMSG00000001946)	PNPLA6 (ENSMMSG00000002007)	CAMSAP3 (ENSMMSG00000002454)	XAB2 (ENSMMSG00000002541)	PET100 (ENSMMSG00000002583)
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000156050	ENSGT00950000183063.d	ENSGT00940000156138	ENSGT00940000156015	ENSGT00390000004581	ENSGT00940000156670	ENSGT00390000004327	ENSGT01030000234528.B.b.b	ENSGT00940000164888	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Cetacea	DUPLICATION
Cetacea	ANCESTRAL SPECIES		ENSGT00940000156454	ENSGT00940000156050	ENSGT00950000183063.d	ENSGT00940000156138	ENSGT00940000156015	ENSGT00390000004581	ENSGT00940000156670	ENSGT01030000234528.B.b.b	ENSGT00940000164888	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d.a ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000156454	ENSGT00940000156050	ENSGT00950000183063.d	ENSGT00940000156138	ENSGT00940000156015	ENSGT00390000004581	ENSGT00940000156670	ENSGT01030000234528.B.b.b	ENSGT00940000164888	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d.a ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000156454	ENSGT00940000156050	ENSGT00950000183063.d	ENSGT00940000156138	ENSGT00940000156015	ENSGT00390000004581	ENSGT00940000156670	ENSGT01030000234528.B.b.b	ENSGT00940000164888	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d.a ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000156454	ENSGT00940000156050	ENSGT00950000183063.d	ENSGT00940000156138	ENSGT00940000156015	ENSGT00390000004581	ENSGT00940000156670	ENSGT01030000234528.B.b.b	ENSGT00940000164888	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d.a ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT01000000221911	ENSGT00910000144211.n.a
Vaquita	MODERN SPECIES		EIF4G3 (ENSPSNG00000002080)	ENSPSNG00000002247	ECE1 (ENSPSNG00000002321)	ALPL (ENSPSNG00000002481)	RAP1GAP (ENSPSNG00000002603)	USP48 (ENSPSNG00000002817)	HSPG2 (ENSPSNG00000002933)	ENSPSNG00000003096	ENSPSNG00000003113	CDC42 (ENSPSNG00000003130)	WNT4 (ENSPSNG00000003148)	ZBTB40 (ENSPSNG00000003174)	EPHA8 (ENSPSNG00000000007)	C1QA (ENSPSNG00000000010)	C1QC (ENSPSNG00000000012)	ENSPSNG00000000015 ##22	C1QB (ENSPSNG00000000017)	EPHB2 (ENSPSNG00000000028)	LACTBL1 (ENSPSNG00000000066)	TEX46 (ENSPSNG00000000083)	KDM1A (ENSPSNG00000000123)	LUZP1 (ENSPSNG00000000172)	ENSPSNG00000000186	HTR1D (ENSPSNG00000000194)	HNRNPR (ENSPSNG00000000225)	ZNF436 (ENSPSNG00000000263)	TCEA3 (ENSPSNG00000000283)	ASAP3 (ENSPSNG00000000355)	E2F2 (ENSPSNG00000000429)	ID3 (ENSPSNG00000000452)	ENSPSNG00000000461
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000156454	ENSGT00940000156050	ENSGT00950000183063.d	ENSGT00940000156138	ENSGT00940000156015	ENSGT00390000004581	ENSGT00940000156670	ENSGT01030000234528.B.b.b	ENSGT00940000164888	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d.a ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT01000000221911	ENSGT00910000144211.n.a
Beluga whale	MODERN SPECIES	51	ENSDLEG00000015424	EIF4G3 (ENSDLEG00000015184)	ECE1 (ENSDLEG00000015064)	ALPL (ENSDLEG00000015032)	RAP1GAP (ENSDLEG00000014902)	USP48 (ENSDLEG00000013908)	ENSDLEG00000011698	ENSDLEG00000011504	ENSDLEG00000011489	CDC42 (ENSDLEG00000011472)	WNT4 (ENSDLEG00000011446)	ZBTB40 (ENSDLEG00000011404)	EPHA8 (ENSDLEG00000011365)	C1QA (ENSDLEG00000011355)	C1QC (ENSDLEG00000011346)	ENSDLEG00000011334 ##22	C1QB (ENSDLEG00000011312)	EPHB2 (ENSDLEG00000011282)	LACTBL1 (ENSDLEG00000011226)	TEX46 (ENSDLEG00000011203)	KDM1A (ENSDLEG00000011095)	LUZP1 (ENSDLEG00000011042)	ENSDLEG00000011025	ENSDLEG00000011020	HNRNPR (ENSDLEG00000010998)	ZNF436 (ENSDLEG00000010986)	TCEA3 (ENSDLEG00000010970)	ASAP3 (ENSDLEG00000010923)	E2F2 (ENSDLEG00000010907)	ID3 (ENSDLEG00000010895)	ENSDLEG00000010866
Sperm whale	MODERN SPECIES	14	DDOST (ENSPCTG00005013160)	PINK1 (ENSPCTG00005013111)	HP1BP3 (ENSPCTG00005013029)	EIF4G3 (ENSPCTG00005011686)	ECE1 (ENSPCTG00005010951)	USP48 (ENSPCTG00005009884)	LDLRAD2 (ENSPCTG00005009746)	HSPG2 (ENSPCTG00005008915)	ENSPCTG00005008800	ENSPCTG00005008783	CDC42 (ENSPCTG00005008689)	ZBTB40 (ENSPCTG00005008541)	EPHA8 (ENSPCTG00005008456)	C1QA (ENSPCTG00005008429)	C1QC (ENSPCTG00005008412)	ENSPCTG00005008386 ##22	C1QB (ENSPCTG00005008370)	TEX46 (ENSPCTG00005008344)	KDM1A (ENSPCTG00005008204)	ENSPCTG00005008174	LUZP1 (ENSPCTG00005008166)	HTR1D (ENSPCTG00005008157)	ENSPCTG00005008139	HNRNPR (ENSPCTG00005008005)	ZNF436 (ENSPCTG00005007973)	ENSPCTG00005007963	ENSPCTG00005007949	ENSPCTG00005007932	RPL11 (ENSPCTG00005007888)	ELOA (ENSPCTG00005007856)	PITHD1 (ENSPCTG00005007836)
Blue whale	MODERN SPECIES		ECE1 (ENSBMSG00010002793)	ENSBMSG00010002832	ALPL (ENSBMSG00010002842)	RAP1GAP (ENSBMSG00010002928)	USP48 (ENSBMSG00010003171)	LDLRAD2 (ENSBMSG00010003226)	HSPG2 (ENSBMSG00010003268)	ENSBMSG00010003362	ENSBMSG00010003370	CDC42 (ENSBMSG00010003378)	WNT4 (ENSBMSG00010003390)	ZBTB40 (ENSBMSG00010003402)	EPHA8 (ENSBMSG00010003417)	C1QA (ENSBMSG00010003427)	C1QC (ENSBMSG00010003431)	ENSBMSG00010003435 ##22	C1QB (ENSBMSG00010003440)	EPHB2 (ENSBMSG00010003449)	LACTBL1 (ENSBMSG00010003484)	TEX46 (ENSBMSG00010003491)	KDM1A (ENSBMSG00010003502)	LUZP1 (ENSBMSG00010003518)	ENSBMSG00010004733	HTR1D (ENSBMSG00010004745)	HNRNPR (ENSBMSG00010004760)	ZNF436 (ENSBMSG00010004782)	TCEA3 (ENSBMSG00010004788)	ASAP3 (ENSBMSG00010004825)	E2F2 (ENSBMSG00010004902)	ID3 (ENSBMSG00010004913)	ENSBMSG00010004917
Cetacea	DUPLICATION
Cetacea	ANCESTRAL SPECIES	10	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b	ENSGT00940000159279	ENSGT00530000063627.b	ENSGT00940000162632	ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000018895.a	ENSGT00940000159458	ENSGT00940000158378	ENSGT00940000160779	ENSGT00940000154487.A	ENSGT00940000156392.a	ENSGT00940000154431.e.a.a.b.a.d.b.a ##22	ENSGT00950000182802.A.ab.a.a.a.a.b.b.a	ENSGT00940000165328	ENSGT00940000158516	ENSGT00910000146751	ENSGT00730000111265	ENSGT00940000158617	ENSGT00900000143555	ENSGT00390000012671	ENSGT00940000159661	ENSGT00530000063679.A	ENSGT00940000154110.b	ENSGT01010000227180	ENSGT00940000156558	ENSGT00940000158013	ENSGT00550000074787
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b	ENSGT00940000159279	ENSGT00530000063627.b	ENSGT00940000162632	ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000018895.a	ENSGT00940000159458	ENSGT00940000158378	ENSGT00940000160779	ENSGT00940000154487.A	ENSGT00940000156392.a	ENSGT00940000154431.e.a.a.b.a.d.b.a ##22	ENSGT00950000182802.A.ab.a.a.a.a.b.b.a	ENSGT00940000165328	ENSGT00940000158516	ENSGT00910000146751	ENSGT00730000111265	ENSGT00940000158617	ENSGT00900000143555	ENSGT00390000012671	ENSGT00940000159661	ENSGT00530000063679.A	ENSGT00940000154110.b	ENSGT01010000227180	ENSGT00940000156558	ENSGT00940000158013	ENSGT00550000074787
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b	ENSGT00940000159279	ENSGT00530000063627.b	ENSGT00940000162632	ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000018895.a	ENSGT00940000159458	ENSGT00940000158378	ENSGT00940000160779	ENSGT00940000154487.A	ENSGT00940000156392.a	ENSGT00940000154431.e.a.a.b.a.d.b.a ##22	ENSGT00940000165328	ENSGT00940000158516	ENSGT00910000146751	ENSGT00730000111265	ENSGT00940000158617	ENSGT00900000143555	ENSGT00390000012671	ENSGT00940000159661	ENSGT00530000063679.A	ENSGT00940000154110.b	ENSGT01010000227180	ENSGT00940000156558	ENSGT00940000158013	ENSGT00550000074787	ENSGT00390000009110.`b.b
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b	ENSGT00940000159279	ENSGT00530000063627.b	ENSGT00940000162632	ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000018895.a	ENSGT00940000159458	ENSGT00940000158378	ENSGT00940000160779	ENSGT00940000154487.A	ENSGT00940000156392.a	ENSGT00940000154431.e.a.a.b.a.d.b.a ##22	ENSGT00830000128380.m.a	ENSGT00940000165328	ENSGT00940000158516	ENSGT00910000146751	ENSGT00730000111265	ENSGT00940000158617	ENSGT00900000143555	ENSGT00390000012671	ENSGT00940000159661	ENSGT00530000063679.A	ENSGT00940000154110.b	ENSGT01010000227180	ENSGT00940000156558	ENSGT00940000158013	ENSGT00550000074787
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b	ENSGT00940000159279	ENSGT00530000063627.b	ENSGT00940000162632	ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000018895.a	ENSGT00940000159458	ENSGT00390000011666.g	ENSGT00940000158378	ENSGT00940000160779	ENSGT00940000154487.A	ENSGT00940000156392.a	ENSGT00940000154431.e.a.a.b.a.d.b.a ##22	ENSGT00950000182802.A.bb.j	ENSGT00830000128380.m.a	ENSGT00940000165328	ENSGT00940000158516	ENSGT00910000146751	ENSGT00730000111265	ENSGT00940000158617	ENSGT00900000143555	ENSGT00390000012671	ENSGT00940000159661	ENSGT00530000063679.A	ENSGT00940000154110.b	ENSGT01010000227180	ENSGT00940000156558	ENSGT00940000158013
Beluga whale	MODERN SPECIES	111	MAATS1 (ENSDLEG00000008809)	COX17 (ENSDLEG00000008752)	POPDC2 (ENSDLEG00000008716)	ENSDLEG00000008698	ADPRH (ENSDLEG00000008689)	CD80 (ENSDLEG00000008659)	TIMMDC1 (ENSDLEG00000008620)	POGLUT1 (ENSDLEG00000008589)	TMEM39A (ENSDLEG00000008559)	ARHGAP31 (ENSDLEG00000008531)	ENSDLEG00000008505	B4GALT4 (ENSDLEG00000008476)	UPK1B (ENSDLEG00000008444)	CUNH3orf30 (ENSDLEG00000008393)	IGSF11 (ENSDLEG00000008349)	ENSDLEG00000008307 ##22	ENSDLEG00000008285	ENSDLEG00000008262	ENSDLEG00000008238	LSAMP (ENSDLEG00000008170)	ENSDLEG00000008129	GAP43 (ENSDLEG00000013057)	ENSDLEG00000013048	ZBTB20 (ENSDLEG00000013028)	ENSDLEG00000013020	TIGIT (ENSDLEG00000013002)	DRD3 (ENSDLEG00000012960)	QTRT2 (ENSDLEG00000012943)	CCDC191 (ENSDLEG00000012911)	ZDHHC23 (ENSDLEG00000012890)	GRAMD1C (ENSDLEG00000012274)
Narwhal	MODERN SPECIES	297	CFAP91 (ENSMMNG00015011132)	COX17 (ENSMMNG00015011097)	POPDC2 (ENSMMNG00015011073)	PLA1A (ENSMMNG00015011043)	ADPRH (ENSMMNG00015011032)	CD80 (ENSMMNG00015011018)	TIMMDC1 (ENSMMNG00015010992)	POGLUT1 (ENSMMNG00015010971)	TMEM39A (ENSMMNG00015010956)	ARHGAP31 (ENSMMNG00015010940)	ENSMMNG00015010930	B4GALT4 (ENSMMNG00015010913)	UPK1B (ENSMMNG00015010881)	ENSMMNG00015010866	IGSF11 (ENSMMNG00015010829)	ENSMMNG00015010814 ##22	ENSMMNG00015010799	ENSMMNG00015010784	LSAMP (ENSMMNG00015010725)	ENSMMNG00015010697	GAP43 (ENSMMNG00015010690)	ENSMMNG00015010680	ENSMMNG00015010673	ENSMMNG00015010661	ZBTB20 (ENSMMNG00015010641)	ENSMMNG00015010631	TIGIT (ENSMMNG00015010619)	DRD3 (ENSMMNG00015010590)	QTRT2 (ENSMMNG00015010546)	CCDC191 (ENSMMNG00015010364)	ENSMMNG00015010331
Sperm whale	MODERN SPECIES		ENSPCTG00005000375	NR1I2 (ENSPCTG00005000415)	MAATS1 (ENSPCTG00005000475)	COX17 (ENSPCTG00005000524)	POPDC2 (ENSPCTG00005000544)	PLA1A (ENSPCTG00005000562)	CD80 (ENSPCTG00005000604)	TIMMDC1 (ENSPCTG00005000635)	POGLUT1 (ENSPCTG00005000664)	TMEM39A (ENSPCTG00005000687)	ARHGAP31 (ENSPCTG00005000706)	B4GALT4 (ENSPCTG00005000732)	UPK1B (ENSPCTG00005000759)	TEX55 (ENSPCTG00005000780)	IGSF11 (ENSPCTG00005000799)	ENSPCTG00005000829 ##22	ENSPCTG00005000839	ENSPCTG00005000851	LSAMP (ENSPCTG00005000878)	GAP43 (ENSPCTG00005000921)	ENSPCTG00005000939	ZBTB20 (ENSPCTG00005000948)	ENSPCTG00005000960	TIGIT (ENSPCTG00005000972)	DRD3 (ENSPCTG00005001005)	QTRT2 (ENSPCTG00005001045)	CCDC191 (ENSPCTG00005001112)	ZDHHC23 (ENSPCTG00005001160)	GRAMD1C (ENSPCTG00005001183)	ATP6V1A (ENSPCTG00005001229)	NAA50 (ENSPCTG00005001279)
Blue whale	MODERN SPECIES	15	NR1I2 (ENSBMSG00010000354)	CFAP91 (ENSBMSG00010000406)	COX17 (ENSBMSG00010000448)	POPDC2 (ENSBMSG00010000468)	PLA1A (ENSBMSG00010000505)	ADPRH (ENSBMSG00010000570)	CD80 (ENSBMSG00010000583)	TIMMDC1 (ENSBMSG00010000604)	POGLUT1 (ENSBMSG00010000630)	TMEM39A (ENSBMSG00010000652)	ARHGAP31 (ENSBMSG00010000696)	B4GALT4 (ENSBMSG00010000721)	UPK1B (ENSBMSG00010000745)	ENSBMSG00010000768	IGSF11 (ENSBMSG00010000864)	ENSBMSG00010000908 ##22	ENSBMSG00010000924	ENSBMSG00010000936	LSAMP (ENSBMSG00010000974)	ENSBMSG00010000999	GAP43 (ENSBMSG00010001011)	ENSBMSG00010001034	ZBTB20 (ENSBMSG00010001050)	TIGIT (ENSBMSG00010001066)	DRD3 (ENSBMSG00010001092)	QTRT2 (ENSBMSG00010001137)	CCDC191 (ENSBMSG00010001180)	ZDHHC23 (ENSBMSG00010001211)	GRAMD1C (ENSBMSG00010001254)	ATP6V1A (ENSBMSG00010001372)	ENSBMSG00010001407
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.a.d.b.b ##22
Blue whale	MODERN SPECIES	14	SUGP1 (ENSBMSG00010002719)	MAU2 (ENSBMSG00010002666)	GATAD2A (ENSBMSG00010002620)	TSSK6 (ENSBMSG00010002611)	YJEFN3 (ENSBMSG00010002588)	CILP2 (ENSBMSG00010002559)	ENSBMSG00010002498	ENSBMSG00010002474	LPAR2 (ENSBMSG00010002465)	GMIP (ENSBMSG00010002416)	ATP13A1 (ENSBMSG00010002333)	ENSBMSG00010002309	OR7C1 (ENSBMSG00010002299)	ENSBMSG00010002290	ENSBMSG00010002274	ENSBMSG00010002262 ##22	ZNF317 (ENSBMSG00010002252)	ENSBMSG00010002239	OR7G3 (ENSBMSG00010002228)	ENSBMSG00010002222	ENSBMSG00010002204	ENSBMSG00010002193	CHI3L1 (ENSBMSG00010002172)	MYBPH (ENSBMSG00010002132)	ENSBMSG00010002106	MYOG (ENSBMSG00010002092)	PPFIA4 (ENSBMSG00010001825)	TMEM183A (ENSBMSG00010001791)	ENSBMSG00010001771	ENSBMSG00010001762	ENSBMSG00010001707
Pecora	ANCESTRAL SPECIES	16	ENSGT00950000183063.d	ENSGT01010000229896	ENSGT00940000156138	ENSGT00940000156015	ENSGT00390000004581	ENSGT00940000156670	ENSGT00390000004327	ENSGT01030000234528.B.b.b	ENSGT00940000164888	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Yarkand deer	MODERN SPECIES	31	ALPL (ENSCHYG00000005079)	ENSCHYG00000005193	RAP1GAP (ENSCHYG00000005242)	USP48 (ENSCHYG00000005594)	ENSCHYG00000005895 ##26	HSPG2 (ENSCHYG00000005998)	ENSCHYG00000006438	ENSCHYG00000006459	ENSCHYG00000006531	CDC42 (ENSCHYG00000006559)	WNT4 (ENSCHYG00000006643)	ZBTB40 (ENSCHYG00000006725)	EPHA8 (ENSCHYG00000007086)	C1QA (ENSCHYG00000007174)	C1QC (ENSCHYG00000007194)	ENSCHYG00000007207 ##22	C1QB (ENSCHYG00000007220)	EPHB2 (ENSCHYG00000007261)	LACTBL1 (ENSCHYG00000007423)	TEX46 (ENSCHYG00000007471)	KDM1A (ENSCHYG00000007485)	LUZP1 (ENSCHYG00000007580)	ENSCHYG00000007625	HNRNPR (ENSCHYG00000007645)	ZNF436 (ENSCHYG00000007725)	TCEA3 (ENSCHYG00000007755)	ASAP3 (ENSCHYG00000007826)	ENSCHYG00000008133	E2F2 (ENSCHYG00000008150)	ID3 (ENSCHYG00000008187)	RPL11 (ENSCHYG00000008204)
Percora_a	ANCESTRAL SPECIES	5	ENSGT01010000229896	ENSGT00940000156138	ENSGT00940000156015	ENSGT00390000004581	ENSGT00940000156670	ENSGT00390000004327	ENSGT01030000234528.B.b.b	ENSGT00940000164888	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000153675.a.a.a.b	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Bovidae	ANCESTRAL SPECIES	8	ENSGT01010000229896	ENSGT00940000156138	ENSGT00940000156015	ENSGT00390000004581	ENSGT00940000156670	ENSGT00390000004327	ENSGT01030000234528.B.b.b	ENSGT00940000164888.a	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000153675.a.a.a.b	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000156050	ENSGT00950000183063.d	ENSGT01010000229896	ENSGT00940000156138	ENSGT00940000156015	ENSGT00940000156670	ENSGT00390000004327	ENSGT01030000234528.B.b.b	ENSGT00940000164888.a	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Bos	ANCESTRAL SPECIES	6	ENSGT00940000156050	ENSGT00950000183063.d	ENSGT01010000229896	ENSGT00940000156138	ENSGT00940000156015	ENSGT00940000156670	ENSGT00390000004327	ENSGT01030000234528.B.b.b	ENSGT00940000164888.a	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d ##22	ENSGT00940000161091	ENSGT00940000155503.j	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Bos_b	ANCESTRAL SPECIES	20	ENSGT00940000156050	ENSGT00950000183063.d	ENSGT01010000229896	ENSGT00940000156138	ENSGT00940000156015	ENSGT00940000156670	ENSGT00390000004327	ENSGT01030000234528.B.b.b	ENSGT00940000164888.a	ENSGT00940000153675.a.a.b.e.a	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d ##22	ENSGT00940000161091	ENSGT00940000155503.j	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Hybrid Bos Indicus	MODERN SPECIES	11	EIF4G3 (ENSBIXG00005004936)	ECE1 (ENSBIXG00005005026)	ALPL (ENSBIXG00005028957)	ENSBIXG00005002114	RAP1GAP (ENSBIXG00005002007)	USP48 (ENSBIXG00005001908)	HSPG2 (ENSBIXG00005005253)	ENSBIXG00005005267	ENSBIXG00005029233	ENSBIXG00005001567	CDC42 (ENSBIXG00005001558)	WNT4 (ENSBIXG00005030836)	EPHA8 (ENSBIXG00005030812)	ZBTB40 (ENSBIXG00005030774)	C1QC (ENSBIXG00005030754)	ENSBIXG00005030749 ##22	C1QB (ENSBIXG00005030741)	EPHB2 (ENSBIXG00005030712)	LACTBL1 (ENSBIXG00005030699)	TEX46 (ENSBIXG00005030685)	KDM1A (ENSBIXG00005030666)	LUZP1 (ENSBIXG00005030651)	ENSBIXG00005030641	HNRNPR (ENSBIXG00005030608)	ZNF436 (ENSBIXG00005030572)	TCEA3 (ENSBIXG00005030565)	ASAP3 (ENSBIXG00005030546)	E2F2 (ENSBIXG00005030535)	ID3 (ENSBIXG00005030525)	ELOA (ENSBIXG00005030482)	ENSBIXG00005030463
Cow	MODERN SPECIES	11	EIF4G3 (ENSBTAG00000040215)	ECE1 (ENSBTAG00000002977)	ALPL (ENSBTAG00000008951)	RAP1GAP (ENSBTAG00000008952)	USP48 (ENSBTAG00000006940)	HSPG2 (ENSBTAG00000017122)	ENSBTAG00000030269	CELA3B (ENSBTAG00000013085)	ENSBTAG00000040602	CDC42 (ENSBTAG00000001700)	WNT4 (ENSBTAG00000051083)	ZBTB40 (ENSBTAG00000016448)	EPHA8 (ENSBTAG00000020102)	C1QA (ENSBTAG00000007153)	C1QC (ENSBTAG00000011193)	ENSBTAG00000011195 ##22	C1QB (ENSBTAG00000011196)	EPHB2 (ENSBTAG00000045902)	LACTBL1 (ENSBTAG00000030413)	TEX46 (ENSBTAG00000053631)	KDM1A (ENSBTAG00000009500)	LUZP1 (ENSBTAG00000009502)	HTR1D (ENSBTAG00000040329)	HNRNPR (ENSBTAG00000016578)	ZNF436 (ENSBTAG00000002594)	TCEA3 (ENSBTAG00000038865)	ASAP3 (ENSBTAG00000012263)	E2F2 (ENSBTAG00000014400)	ID3 (ENSBTAG00000030425)	RPL11 (ENSBTAG00000020905)	ELOA (ENSBTAG00000026585)
Bos_a	ANCESTRAL SPECIES	46	ENSGT00940000156454	ENSGT00940000156050	ENSGT00950000183063.d	ENSGT00940000156138	ENSGT00940000156015	ENSGT00940000156670	ENSGT00390000004327	ENSGT01030000234528.B.b.b	ENSGT00940000164888.a	ENSGT00940000153675.a.a.b.f.t	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d ##22	ENSGT00940000161091	ENSGT00940000155503.j	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00390000002428.a.g.a	ENSGT00490000043398
Wild yak	MODERN SPECIES	1753							ENSBMUG00000015287	ENSBMUG00000015270	ENSBMUG00000015259	CDC42 (ENSBMUG00000015235)	WNT4 (ENSBMUG00000015211)	ZBTB40 (ENSBMUG00000015163)	EPHA8 (ENSBMUG00000015108)	C1QA (ENSBMUG00000015089)	C1QC (ENSBMUG00000015067)	ENSBMUG00000015061 ##22	C1QB (ENSBMUG00000015055)	EPHB2 (ENSBMUG00000014918)	LACTBL1 (ENSBMUG00000014535)	TEX46 (ENSBMUG00000014525)	KDM1A (ENSBMUG00000014489)	LUZP1 (ENSBMUG00000014443)	HTR1D (ENSBMUG00000014427)	HNRNPR (ENSBMUG00000014402)	ZNF436 (ENSBMUG00000014346)	TCEA3 (ENSBMUG00000014332)	ASAP3 (ENSBMUG00000014291)	E2F2 (ENSBMUG00000014201)	ID3 (ENSBMUG00000014128)	ELOA (ENSBMUG00000014096)	PITHD1 (ENSBMUG00000014027)
Domestic yak	MODERN SPECIES	11	ENSBGRG00000000750	ECE1 (ENSBGRG00000000770)	ALPL (ENSBGRG00000000875)	RAP1GAP (ENSBGRG00000000964)	USP48 (ENSBGRG00000001116)	ENSBGRG00000003230	ENSBGRG00000003236	ENSBGRG00000003260	ENSBGRG00000003268	CDC42 (ENSBGRG00000003276)	WNT4 (ENSBGRG00000003297)	ZBTB40 (ENSBGRG00000003315)	EPHA8 (ENSBGRG00000003384)	C1QA (ENSBGRG00000003422)	C1QC (ENSBGRG00000003430)	ENSBGRG00000003435 ##22	C1QB (ENSBGRG00000003451)	EPHB2 (ENSBGRG00000003473)	ENSBGRG00000003557	LACTBL1 (ENSBGRG00000003569)	TEX46 (ENSBGRG00000003590)	KDM1A (ENSBGRG00000003651)	LUZP1 (ENSBGRG00000003910)	ENSBGRG00000003957	HNRNPR (ENSBGRG00000003976)	ZNF436 (ENSBGRG00000004113)	TCEA3 (ENSBGRG00000004156)	ASAP3 (ENSBGRG00000004358)	E2F2 (ENSBGRG00000004509)	ID3 (ENSBGRG00000004562)	ELOA (ENSBGRG00000004602)
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000156050	ENSGT00950000183063.d	ENSGT00940000156138	ENSGT00940000156015	ENSGT00390000004581	ENSGT00940000156670	ENSGT00390000004327	ENSGT01030000234528.B.b.b	ENSGT00940000164888.a	ENSGT00940000153675.a.a.a.b	ENSGT00940000159654	ENSGT00930000151052	ENSGT00940000160469	ENSGT00940000162143	ENSGT00940000161227	ENSGT00940000154431.e.a.a.b.a.d ##22	ENSGT00940000161091	ENSGT00940000155503	ENSGT00450000040404.a	ENSGT00390000007769	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT00940000163614.g.a	ENSGT00940000153511.a	ENSGT00940000153587.b	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a	ENSGT00390000002428.a.g.a
Goat	MODERN SPECIES	11	ENSCHIG00000023654	ECE1 (ENSCHIG00000023984)	ALPL (ENSCHIG00000012120)	RAP1GAP (ENSCHIG00000024073)	USP48 (ENSCHIG00000023316)	HSPG2 (ENSCHIG00000014793)	ENSCHIG00000004503	ENSCHIG00000026534	ENSCHIG00000011827	ENSCHIG00000013977	WNT4 (ENSCHIG00000026576)	ZBTB40 (ENSCHIG00000007943)	EPHA8 (ENSCHIG00000023334)	C1QA (ENSCHIG00000024710)	C1QC (ENSCHIG00000011222)	ENSCHIG00000015804 ##22	C1QB (ENSCHIG00000017414)	EPHB2 (ENSCHIG00000022795)	LACTBL1 (ENSCHIG00000024958)	TEX46 (ENSCHIG00000008997)	KDM1A (ENSCHIG00000009169)	LUZP1 (ENSCHIG00000026939)	ENSCHIG00000009762	ENSCHIG00000011193	HNRNPR (ENSCHIG00000024030)	ENSCHIG00000023575	TCEA3 (ENSCHIG00000016911)	ASAP3 (ENSCHIG00000014521)	E2F2 (ENSCHIG00000007326)	ID3 (ENSCHIG00000024360)	RPL11 (ENSCHIG00000020543)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	11	BOLL (ENSOARG00020012643)	MARS2 (ENSOARG00020012596)	RFTN2 (ENSOARG00020012524)	ENSOARG00020012334	HSP10 (ENSOARG00020012227)	ENSOARG00020012172	COQ10B (ENSOARG00020011999)	SF3B1 (ENSOARG00020011806)	ANKRD44 (ENSOARG00020010197)	PGAP1 (ENSOARG00020009268)	C2orf66 (ENSOARG00020009210)	GTF3C3 (ENSOARG00020009036)	ENSOARG00020008885	HECW2 (ENSOARG00020008825)	STK17B (ENSOARG00020008783)	ENSOARG00020008748 ##22	DNAH7 (ENSOARG00020008105)	SLC39A10 (ENSOARG00020008005)	ENSOARG00020007907	ENSOARG00020007893	TMEFF2 (ENSOARG00020007844)	CAVIN2 (ENSOARG00020007809)	ENSOARG00020007703	MYO1B (ENSOARG00020007023)	ENSOARG00020006933	CNTNAP5 (ENSOARG00020006735)	ENSOARG00020006673	ENSOARG00020006612	ENSOARG00020006595	ENSOARG00020006557	ENSOARG00020006534
Rambouillet Sheep	MODERN SPECIES	11	EIF4G3 (ENSOARG00020021895)	ECE1 (ENSOARG00020021243)	ALPL (ENSOARG00020021104)	RAP1GAP (ENSOARG00020020068)	USP48 (ENSOARG00020018641)	LDLRAD2 (ENSOARG00020018553)	HSPG2 (ENSOARG00020017786)	ENSOARG00020017750	ENSOARG00020017679	ENSOARG00020017583	WNT4 (ENSOARG00020017488)	ZBTB40 (ENSOARG00020017357)	EPHA8 (ENSOARG00020017175)	C1QA (ENSOARG00020017135)	C1QC (ENSOARG00020017086)	ENSOARG00020017024 ##22	C1QB (ENSOARG00020016982)	EPHB2 (ENSOARG00020016163)	LACTBL1 (ENSOARG00020016054)	TEX46 (ENSOARG00020016013)	KDM1A (ENSOARG00020015208)	LUZP1 (ENSOARG00020015164)	ENSOARG00020015143	ENSOARG00020015124	HNRNPR (ENSOARG00020014959)	ZNF436 (ENSOARG00020014925)	TCEA3 (ENSOARG00020014896)	ASAP3 (ENSOARG00020014082)	E2F2 (ENSOARG00020013979)	ID3 (ENSOARG00020013911)	RPL11 (ENSOARG00020013779)
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.b ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.b ##22
Pecora	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.b ##22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.b ##22
Bovidae	ANCESTRAL SPECIES		ENSGT01090000259995.b.b.a.a.b.h.b.b	ENSGT01090000259995.b.b.a.a.a	ENSGT01090000260018.C.b.a.b	ENSGT01090000259995.b.a.a.a.a.a.b	ENSGT01090000259995.b.a.a.a.b	ENSGT01090000259995.b.a.a.a.a.a.a	ENSGT01090000260018.A.a.a.b.b.s.b	ENSGT01090000260018.A.a.a.b.b.t	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.a.a	ENSGT01090000260018.A.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.b.b	ENSGT01100000263548.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00940000154431.e.a.a.b.b ##22	ENSGT01090000260018.A.a.a.b.b.s.a.d	ENSGT01090000260018.A.a.a.b.a.g.b	ENSGT01090000260018.A.a.a.b.a.g.a	ENSGT01090000260018.A.a.a.b.b.s.a.c	ENSGT01090000260018.A.a.a.b.a.h	ENSGT01090000259995.a.a.b.a.b.b.f	ENSGT01090000259995.a.a.a	ENSGT00390000010671	ENSGT00570000079564	ENSGT00390000018500.a	ENSGT01100000263552.g.b.a.a	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.b	ENSGT01090000259995.a.a.b.a.a.a.a
Bovinae	ANCESTRAL SPECIES	2	ENSGT01090000259995.b.b.a.a.b.h.b.a	ENSGT01090000259995.b.b.a.a.b.h.a.a.b.a	ENSGT01090000259995.b.b.a.a.b.h.b.b	ENSGT01090000259995.b.b.a.a.a	ENSGT01090000260018.C.b.a.b	ENSGT01090000259995.b.a.a.a.a.a.b	ENSGT01090000259995.b.a.a.a.b	ENSGT01090000259995.b.a.a.a.a.a.a	ENSGT01090000260018.A.a.a.b.b.t	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.a.a	ENSGT01090000260018.A.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00940000154431.e.a.a.b.b ##22	ENSGT01090000260018.A.a.a.b.b.s.a.d	ENSGT01090000260018.A.a.a.b.a.g.b	ENSGT01090000260018.A.a.a.b.a.g.a	ENSGT01090000260018.A.a.a.b.b.s.a.c	ENSGT01090000260018.A.a.a.b.a.h	ENSGT01090000259995.a.a.b.a.b.b.f	ENSGT01090000259995.a.a.a	ENSGT00390000010671	ENSGT00570000079564	ENSGT00390000018500.a	ENSGT01100000263552.g.b.a.a	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.b	ENSGT01090000259995.a.a.b.a.a.a.a
American bison	MODERN SPECIES	2141																ENSBBBG00000020996 ##22
Bos	ANCESTRAL SPECIES	3	ENSGT01090000259995.b.b.a.a.b.h.b.a	ENSGT01090000259995.b.b.a.a.b.h.a.a.b.a	ENSGT01090000259995.b.b.a.a.b.h.b.b	ENSGT01090000259995.b.b.a.a.a	ENSGT01090000260018.C.b.a.b	ENSGT01090000259995.b.a.a.a.a.a.b	ENSGT01090000259995.b.a.a.a.b	ENSGT01090000259995.b.a.a.a.a.a.a	ENSGT01090000260018.A.a.a.b.b.t	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.a.a	ENSGT01090000260018.A.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00940000154431.e.a.a.b.b ##22	ENSGT01090000260018.A.a.a.b.b.s.a.d	ENSGT01090000260018.A.a.a.b.a.g.b	ENSGT01090000260018.A.a.a.b.a.g.a	ENSGT01090000260018.A.a.a.b.b.s.a.c	ENSGT01090000260018.A.a.a.b.a.h	ENSGT01090000259995.a.a.b.a.b.b.f	ENSGT01090000259995.a.a.a	ENSGT00390000010671	ENSGT00570000079564	ENSGT00390000018500.a	ENSGT01100000263552.g.b.a.a	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.b	ENSGT01090000259995.a.a.b.a.a.a.a
Bos_a	ANCESTRAL SPECIES	2	ENSGT01090000259995.b.b.a.a.b.h.b.a	ENSGT01090000259995.b.b.a.a.b.h.a.a.b.a	ENSGT01090000259995.b.b.a.a.b.h.b.b	ENSGT01090000259995.b.b.a.a.a	ENSGT01090000260018.C.b.a.b	ENSGT01090000259995.b.a.a.a.a.a.b	ENSGT01090000259995.b.a.a.a.b	ENSGT01090000259995.b.a.a.a.a.a.a	ENSGT01090000260018.A.a.a.b.b.t	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.a.a	ENSGT01090000260018.A.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00940000154431.e.a.a.b.b ##22	ENSGT01090000260018.A.a.a.b.b.s.a.d	ENSGT01090000260018.A.a.a.b.a.g.b	ENSGT01090000260018.A.a.a.b.a.g.a	ENSGT01090000260018.A.a.a.b.b.s.a.c	ENSGT01090000260018.A.a.a.b.a.h	ENSGT01090000259995.a.a.b.a.b.b.f	ENSGT01090000259995.a.a.a	ENSGT00390000010671	ENSGT00570000079564	ENSGT00390000018500.a	ENSGT00940000154411.`b.i.f	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.b	ENSGT01090000259995.a.a.b.a.a.a.a
Domestic yak	MODERN SPECIES	27	ENSBGRG00000016008	ENSBGRG00000016239	ENSBGRG00000016263	ENSBGRG00000016275	OR2L13 (ENSBGRG00000016291)	ENSBGRG00000016308	OR2M4 (ENSBGRG00000016369)	ENSBGRG00000016395	ENSBGRG00000016443	OR2T6 (ENSBGRG00000016459)	OR2T1 (ENSBGRG00000016512)	OR2T27 (ENSBGRG00000016528)	ENSBGRG00000016544	OR2T11 (ENSBGRG00000016559)	OR2G6 (ENSBGRG00000016586)	ENSBGRG00000016599 ##22	ENSBGRG00000016624	ENSBGRG00000004256	ENSBGRG00000004269	ENSBGRG00000004291	ENSBGRG00000004320	ENSBGRG00000004338	ENSBGRG00000004353	ENSBGRG00000004389	LYPD8 (ENSBGRG00000004410)	SH3BP5L (ENSBGRG00000004447)	ENSBGRG00000004486	ZNF692 (ENSBGRG00000004523)	ENSBGRG00000004763	PGBD2 (ENSBGRG00000004785)	ENSBGRG00000004822
Bos_b	ANCESTRAL SPECIES	2	ENSGT01090000259995.b.b.a.a.b.h.b.a	ENSGT01090000259995.b.b.a.a.b.h.a.a.b.a	ENSGT01090000259995.b.b.a.a.b.h.b.b	ENSGT01090000259995.b.b.a.a.a	ENSGT01090000260018.C.b.a.b	ENSGT01090000259995.b.a.a.a.a.a.b	ENSGT01090000259995.b.a.a.a.b	ENSGT01090000259995.b.a.a.a.a.a.a	ENSGT01090000260018.A.a.a.b.b.t	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.a.a	ENSGT01090000260018.A.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00940000154431.e.a.a.b.b ##22	ENSGT01090000260018.A.a.a.b.b.s.a.d	ENSGT01090000260018.A.a.a.b.a.g.b	ENSGT01090000260018.A.a.a.b.a.g.a	ENSGT01090000260018.A.a.a.b.b.s.a.c	ENSGT01090000260018.A.a.a.b.a.h	ENSGT01090000259995.a.a.b.a.b.b.f	ENSGT01090000259995.a.a.a	ENSGT00390000010671	ENSGT00570000079564	ENSGT00390000018500.a	ENSGT01100000263552.g.b.a.a	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.b	ENSGT01090000259995.a.a.b.a.a.a.a
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005027180	ENSBIXG00005027184	ENSBIXG00005027197	OR2L13 (ENSBIXG00005004682)	ENSBIXG00005004686	ENSBIXG00005027211	OR2M4 (ENSBIXG00005027222)	ENSBIXG00005027236	ENSBIXG00005027275	OR2T6 (ENSBIXG00005027290)	OR2T1 (ENSBIXG00005004699)	OR2T27 (ENSBIXG00005027314)	ENSBIXG00005006943	OR2T11 (ENSBIXG00005005618)	OR2G6 (ENSBIXG00005027373)	ENSBIXG00005027392 ##22	ENSBIXG00005027403	ENSBIXG00005005622	ENSBIXG00005004719	ENSBIXG00005027448	ENSBIXG00005027460	ENSBIXG00005004728	ENSBIXG00005004732	ENSBIXG00005027521	SH3BP5L (ENSBIXG00005027559)	ENSBIXG00005027579	ZNF692 (ENSBIXG00005027650)	PGBD2 (ENSBIXG00005027678)	ENSBIXG00005027690	ENSBIXG00005027696	ENSBIXG00005027721
Cow	MODERN SPECIES	26	OR2L2B (ENSBTAG00000051864)	OR2L2C (ENSBTAG00000049479)	OR2L3C (ENSBTAG00000052782)	OR2L13 (ENSBTAG00000013691)	OR2T22 (ENSBTAG00000048025)	OR2M16 (ENSBTAG00000009497)	OR2M4 (ENSBTAG00000030722)	OR2M10 (ENSBTAG00000019925)	OR2T4 (ENSBTAG00000049083)	OR2T6 (ENSBTAG00000045644)	OR2T1 (ENSBTAG00000024653)	OR2T27 (ENSBTAG00000030719)	OR2T2 (ENSBTAG00000034743)	OR2T11 (ENSBTAG00000003551)	OR2G6 (ENSBTAG00000027768)	ENSBTAG00000054428 ##22	OR2T29 (ENSBTAG00000021098)	OR2T3 (ENSBTAG00000053601)	OR2T3C (ENSBTAG00000048753)	OR2T55 (ENSBTAG00000052410)	ENSBTAG00000030714	OR2AV13 (ENSBTAG00000047519)	OR2Z2 (ENSBTAG00000016065)	MGC137030 (ENSBTAG00000024809)	LYPD8 (ENSBTAG00000030711)	SH3BP5L (ENSBTAG00000002645)	ZNF672 (ENSBTAG00000046984)	ZNF692 (ENSBTAG00000021115)	PGBD2 (ENSBTAG00000019814)	OR2AV1 (ENSBTAG00000046200)	OR2AV14 (ENSBTAG00000046953)
Caprinae	ANCESTRAL SPECIES	3	ENSGT01090000259995.b.b.a.a.b.h.b.a.d	ENSGT01090000259995.b.b.a.a.b.h.a.a.b.a	ENSGT01090000259995.b.b.a.a.b.h.a.a.a	ENSGT01090000259995.b.b.a.a.a	ENSGT01090000260018.C.b.a.b	ENSGT01090000259995.b.a.a.a.b	ENSGT01090000259995.b.a.a.a.a.a.a	ENSGT01090000260018.A.a.a.b.b.s.b	ENSGT01090000260018.A.a.a.b.b.t	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.a.a	ENSGT01090000260018.A.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.b.b.m	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00940000154431.e.a.a.b.b ##22	ENSGT01090000260018.A.a.a.b.b.s.a.d	ENSGT01090000260018.A.a.a.b.a.g.b	ENSGT01090000260018.A.a.a.b.a.g.a	ENSGT01090000260018.A.a.a.b.b.s.a.c	ENSGT01090000260018.A.a.a.b.a.h	ENSGT01090000259995.a.a.b.a.b.b.f	ENSGT01090000259995.a.a.a	ENSGT00390000010671	ENSGT00570000079564	ENSGT00390000018500.a	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.b	ENSGT01090000259995.a.a.b.a.a.a.a
Goat	MODERN SPECIES	26	ENSCHIG00000003560	ENSCHIG00000009146	ENSCHIG00000003088	ENSCHIG00000001411	ENSCHIG00000012107	ENSCHIG00000006487	ENSCHIG00000022739	OR2M4 (ENSCHIG00000001481)	ENSCHIG00000012055	ENSCHIG00000012542	ENSCHIG00000026910	OR2T1 (ENSCHIG00000001420)	ENSCHIG00000006401	OR2T11 (ENSCHIG00000022429)	OR2G6 (ENSCHIG00000002099)	ENSCHIG00000008431 ##22	ENSCHIG00000018731	ENSCHIG00000010616	ENSCHIG00000009490	ENSCHIG00000022428	ENSCHIG00000008999	ENSCHIG00000014028	ENSCHIG00000021690	LYPD8 (ENSCHIG00000018982)	SH3BP5L (ENSCHIG00000009447)	ZNF672 (ENSCHIG00000007515)	ZNF692 (ENSCHIG00000015907)	ENSCHIG00000022233	PGBD2 (ENSCHIG00000004584)	ENSCHIG00000006176	PLPP2 (ENSCHIG00000026941)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	302	PAXIP1 (ENSMMSG00000007585)	HTR5A (ENSMMSG00000007561)	INSIG1 (ENSMMSG00000007539)	EN2 (ENSMMSG00000007514)	ENSMMSG00000007461	ENSMMSG00000007453	RBM33 (ENSMMSG00000007384)	SHH (ENSMMSG00000007351)	RNF32 (ENSMMSG00000007083)	LMBR1 (ENSMMSG00000006852)	NOM1 (ENSMMSG00000006749)	MNX1 (ENSMMSG00000006716)	UBE3C (ENSMMSG00000006524)	DNAJB6 (ENSMMSG00000006445)	ENSMMSG00000006376	ENSMMSG00000006288 ##22	NCAPG2 (ENSMMSG00000006253)	ESYT2 (ENSMMSG00000005840)	ENSMMSG00000005740	ENSMMSG00000005668	VIPR2 (ENSMMSG00000005608)
Siberian musk deer	MODERN SPECIES	64	SMIM3 (ENSMMSG00000002397)	DCTN4 (ENSMMSG00000002358)	RBM22 (ENSMMSG00000002304)	MYOZ3 (ENSMMSG00000002283)	SYNPO (ENSMMSG00000002258)	NDST1 (ENSMMSG00000002217)	ENSMMSG00000002199	CD74 (ENSMMSG00000002175)	TCOF1 (ENSMMSG00000002050)	ARSI (ENSMMSG00000002014)	CAMK2A (ENSMMSG00000001943)	SLC6A7 (ENSMMSG00000001903)	CDX1 (ENSMMSG00000001895)	PDGFRB (ENSMMSG00000001819)	CSF1R (ENSMMSG00000001755)	ENSMMSG00000001734 ##22	HMGXB3 (ENSMMSG00000001693)	SLC26A2 (ENSMMSG00000001663)	ENSMMSG00000001654	PDE6A (ENSMMSG00000001576)	PPARGC1B (ENSMMSG00000001527)	ARHGEF37 (ENSMMSG00000001496)
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.b ##22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.a.b.b ##22
Sperm whale	MODERN SPECIES	11	HAPLN4 (ENSPCTG00005012308)	TM6SF2 (ENSPCTG00005012374)	SUGP1 (ENSPCTG00005012419)	TSSK6 (ENSPCTG00005012651)	NDUFA13 (ENSPCTG00005012668)	YJEFN3 (ENSPCTG00005012712)	CILP2 (ENSPCTG00005012782)	ENSPCTG00005012911	ENSPCTG00005012928	LPAR2 (ENSPCTG00005012960)	GMIP (ENSPCTG00005012997)	ATP13A1 (ENSPCTG00005013057)	ENSPCTG00005013134	ENSPCTG00005013155	ENSPCTG00005013185	ENSPCTG00005013280 ##22	OR7G3 (ENSPCTG00005013334)	ZNF317 (ENSPCTG00005013391)	ENSPCTG00005013462	ENSPCTG00005013486	OR1M1 (ENSPCTG00005013520)	ENSPCTG00005013549	ENSPCTG00005013683	ENSPCTG00005014021	ENSPCTG00005014073	ENSPCTG00005014150	ENSPCTG00005014212	MAN2B1 (ENSPCTG00005014341)	NFIX (ENSPCTG00005015199)	LYL1 (ENSPCTG00005015333)	TRMT1 (ENSPCTG00005015397)
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.b ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.b ##22
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.b ##22
Blue whale	MODERN SPECIES	14	TMIGD2 (ENSBMSG00010004047)	SHD (ENSBMSG00010004056)	YJU2 (ENSBMSG00010004085)	EBI3 (ENSBMSG00010004101)	ANKRD24 (ENSBMSG00010004125)	SIRT6 (ENSBMSG00010004161)	CREB3L3 (ENSBMSG00010004181)	MAP2K2 (ENSBMSG00010004206)	PIAS4 (ENSBMSG00010004230)	EEF2 (ENSBMSG00010006690)	ENSBMSG00010006760	ATCAY (ENSBMSG00010006778)	ZFR2 (ENSBMSG00010006830)	ZNF555 (ENSBMSG00010007047)	ENSBMSG00010007074	ENSBMSG00010007090 ##22	ENSBMSG00010007121	ENSBMSG00010007140	ENSBMSG00010007156	ENSBMSG00010007176	TLE2 (ENSBMSG00010007244)	TLE5 (ENSBMSG00010007577)	GNA11 (ENSBMSG00010007614)	GNA15 (ENSBMSG00010007638)	S1PR4 (ENSBMSG00010007650)	NCLN (ENSBMSG00010007666)	CELF5 (ENSBMSG00010007695)	NFIC (ENSBMSG00010007764)	ENSBMSG00010007983	DOHH (ENSBMSG00010008048)	FZR1 (ENSBMSG00010008072)
Pecora	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.b ##22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.b ##22
Siberian musk deer	MODERN SPECIES	57	MTRES1 (ENSMMSG00000009604)	CD24 (ENSMMSG00000009656)	ENSMMSG00000009682	QRSL1 (ENSMMSG00000009700)	RTN4IP1 (ENSMMSG00000009752)	CRYBG1 (ENSMMSG00000009812)	ATG5 (ENSMMSG00000009989)	PRDM1 (ENSMMSG00000010156)	PREP (ENSMMSG00000010324)	POPDC3 (ENSMMSG00000010364)	BVES (ENSMMSG00000010405)	ENSMMSG00000010511	LIN28B (ENSMMSG00000010589)	HACE1 (ENSMMSG00000010633)	ENSMMSG00000010683	ENSMMSG00000010701 ##22	GRIK2 (ENSMMSG00000010751)	ASCC3 (ENSMMSG00000011234)	SIM1 (ENSMMSG00000011342)	ENSMMSG00000011367	MCHR2 (ENSMMSG00000011392)	PRDM13 (ENSMMSG00000011437)	ENSMMSG00000011452	ENSMMSG00000011528	ENSMMSG00000012283	ENSMMSG00000012312	PNISR (ENSMMSG00000012362)	COQ3 (ENSMMSG00000012403)	FAXC (ENSMMSG00000012455)	FBXL4 (ENSMMSG00000012478)	POU3F2 (ENSMMSG00000012495)
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Mustelinae	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Ferret	MODERN SPECIES	163	ARL6IP5 (ENSMPUG00000016965)	LMOD3 (ENSMPUG00000016967)	FRMD4B (ENSMPUG00000016969)	MITF (ENSMPUG00000016972)	FOXP1 (ENSMPUG00000017001)	EIF4E3 (ENSMPUG00000017002)	PROK2 (ENSMPUG00000017003)	RYBP (ENSMPUG00000017004)	SHQ1 (ENSMPUG00000017006)	GXYLT2 (ENSMPUG00000017007)	PPP4R2 (ENSMPUG00000017008)	PDZRN3 (ENSMPUG00000017009)	ENSMPUG00000017010	CNTN3 (ENSMPUG00000017011)	ENSMPUG00000020109	ENSMPUG00000017012 ##22	CHL1 (ENSMPUG00000017013)	ENSMPUG00000020110	CNTN6 (ENSMPUG00000017014)	CNTN4 (ENSMPUG00000017015)	IL5RA (ENSMPUG00000017016)	TRNT1 (ENSMPUG00000017017)	CRBN (ENSMPUG00000017018)	LRRN1 (ENSMPUG00000020111)	ENSMPUG00000017019	ENSMPUG00000017021	SUMF1 (ENSMPUG00000017022)	ENSMPUG00000017028	ITPR1 (ENSMPUG00000017024)	BHLHE40 (ENSMPUG00000017029)	ENSMPUG00000017030
Felidae	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Panthera	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
lion	MODERN SPECIES	84												ENSPLOG00000017718	ENSPLOG00000017773	ENSPLOG00000017878	ZNF169 (ENSPLOG00000017893)	ENSPLOG00000017938 ##22	PTPDC1 (ENSPLOG00000017990)	BARX1 (ENSPLOG00000018016)	PHF2 (ENSPLOG00000018086)	FAM120A (ENSPLOG00000018324)	WNK2 (ENSPLOG00000019349)
Tiger	MODERN SPECIES	415			ENSPTIG00000007164	ATF6B (ENSPTIG00000007106)	FKBPL (ENSPTIG00000009195)	PRRT1 (ENSPTIG00000007094)	PPT2 (ENSPTIG00000007070)	EGFL8 (ENSPTIG00000007041)	AGPAT1 (ENSPTIG00000007014)	RNF5 (ENSPTIG00000007005)	AGER (ENSPTIG00000006921)	PBX2 (ENSPTIG00000006899)	GPSM3 (ENSPTIG00000006883)	NOTCH4 (ENSPTIG00000006842)	ENSPTIG00000006816	ENSPTIG00000006805 ##22	ENSPTIG00000006752	ENSPTIG00000006731	BTNL2 (ENSPTIG00000006701)	ENSPTIG00000006461	HLA-DRA (ENSPTIG00000006439)	ENSPTIG00000006308	ENSPTIG00000006266	HLA-DOB (ENSPTIG00000006225)	TAP2 (ENSPTIG00000006162)	PSMB8 (ENSPTIG00000006141)	TAP1 (ENSPTIG00000006078)	PSMB9 (ENSPTIG00000006050)	HLA-DMB (ENSPTIG00000006035)	HLA-DMA (ENSPTIG00000006011)	ENSPTIG00000006002
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Primates	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Bushbaby	MODERN SPECIES	135	ENSOGAG00000032115	FOXN3 (ENSOGAG00000001733)	TTC8 (ENSOGAG00000013285)	EML5 (ENSOGAG00000005378)	ZC3H14 (ENSOGAG00000005373)	PTPN21 (ENSOGAG00000009190)	SPATA7 (ENSOGAG00000009184)	KCNK10 (ENSOGAG00000004424)	ENSOGAG00000028840	GPR65 (ENSOGAG00000000929)	GALC (ENSOGAG00000000928)	ENSOGAG00000028921	ENSOGAG00000029610	FLRT2 (ENSOGAG00000016533)	ENSOGAG00000027786	ENSOGAG00000031950 ##22	SEL1L (ENSOGAG00000005031)	STON2 (ENSOGAG00000005230)	GTF2A1 (ENSOGAG00000005229)	TSHR (ENSOGAG00000033508)	ENSOGAG00000012068	ENSOGAG00000024501	ENSOGAG00000024798	ENSOGAG00000006845	ENSOGAG00000028456	ADCK1 (ENSOGAG00000006841)	SNW1 (ENSOGAG00000029825)	ALKBH1 (ENSOGAG00000006929)	SPTLC2 (ENSOGAG00000008377)	ISM2 (ENSOGAG00000032748)	AHSA1 (ENSOGAG00000006207)
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Vervet Monkey	MODERN SPECIES	26	TMPRSS11B (ENSCSAG00000005243)	ENSCSAG00000000429	TMPRSS11F (ENSCSAG00000005238)	TMPRSS11A (ENSCSAG00000005227)	TMPRSS11D (ENSCSAG00000005222)	GNRHR (ENSCSAG00000005216)	UBA6 (ENSCSAG00000005213)	STAP1 (ENSCSAG00000005207)	CENPC (ENSCSAG00000005202)	ENSCSAG00000005197	ENSCSAG00000000428	ENSCSAG00000000427	EPHA5 (ENSCSAG00000005186)	TECRL (ENSCSAG00000005163)	ADGRL3 (ENSCSAG00000005151)	ENSCSAG00000005140 ##22	IGFBP7 (ENSCSAG00000005138)	ENSCSAG00000000426	POLR2B (ENSCSAG00000005130)	REST (ENSCSAG00000005119)	ENSCSAG00000005117	HOPX (ENSCSAG00000005112)	THEGL (ENSCSAG00000005107)	ARL9 (ENSCSAG00000005100)	SRP72 (ENSCSAG00000005079)	PPAT (ENSCSAG00000005060)	ENSCSAG00000000425	AASDH (ENSCSAG00000005057)	ENSCSAG00000005053	CRACD (ENSCSAG00000005049)	CEP135 (ENSCSAG00000005042)
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Macaca	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Macaca_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Rhesus	MODERN SPECIES	13	EVX1 (ENSMMUG00000056313) #7	HOXA13 (ENSMMUG00000013463) #8	HOXA11 (ENSMMUG00000055708) #9	HOXA10 (ENSMMUG00000051571) #10	HOXA9 (ENSMMUG00000013459) #11	HOXA7 (ENSMMUG00000013458) #12	HOXA6 (ENSMMUG00000061724) #13	HOXA5 (ENSMMUG00000061471) #14	HOXA4 (ENSMMUG00000040874) #15	HOXA3 (ENSMMUG00000051572) #16	HOXA2 (ENSMMUG00000054649) #17	HOXA1 (ENSMMUG00000012807) #18	SKAP2 (ENSMMUG00000018544) #19	SNX10 (ENSMMUG00000023230) #20	CBX3 (ENSMMUG00000040322) #21	HNRNPA2B1 (ENSMMUG00000003619) ##22	NFE2L3 (ENSMMUG00000003615) #23	NPVF (ENSMMUG00000008369) #24	C3H7orf31 (ENSMMUG00000005701) #25	CYCS (ENSMMUG00000051205) ##26	ENSMMUG00000064777	OSBPL3 (ENSMMUG00000016939) #27	GSDME (ENSMMUG00000016938) #28	PALS2 (ENSMMUG00000016936) #29	NPY (ENSMMUG00000009818) #30	STK31 (ENSMMUG00000023196) #31	ENSMMUG00000053543	FAM221A (ENSMMUG00000023194) #32	CCDC126 (ENSMMUG00000014987) #33	TRA2A (ENSMMUG00000006286) #34	ENSMMUG00000056703
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Glires	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Muroidea	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Cricetidae	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Cricetinae	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Golden Hamster	MODERN SPECIES	624	Irf2 (ENSMAUG00000009382)	Casp3 (ENSMAUG00000004837)	Cenpu (ENSMAUG00000006619)	Acsl1 (ENSMAUG00000008881)	Helt (ENSMAUG00000021096)	Slc25a4 (ENSMAUG00000018790)	Cfap97 (ENSMAUG00000014869)	Snx25 (ENSMAUG00000013432)	Lrp2bp (ENSMAUG00000008998)	Ankrd37 (ENSMAUG00000019083)	ENSMAUG00000015958	1700029J07Rik (ENSMAUG00000021203)	Ccdc110 (ENSMAUG00000019990)	Pdlim3 (ENSMAUG00000010651)	ENSMAUG00000017107	ENSMAUG00000015003 ##22	Tlr3 (ENSMAUG00000021277)	Fam149a (ENSMAUG00000014562)	Cyp4v3 (ENSMAUG00000019502)	Klkb1 (ENSMAUG00000003926)	F11 (ENSMAUG00000010989)	Fat1 (ENSMAUG00000008106)	ENSMAUG00000015546	ENSMAUG00000013340	Zfp42 (ENSMAUG00000006823)	Triml2 (ENSMAUG00000017891)	ENSMAUG00000009151	ENSMAUG00000019055 ##26	Frg1 (ENSMAUG00000000847)	Asah1 (ENSMAUG00000012435)	Pcm1 (ENSMAUG00000019132)
Murinae	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Mus	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Steppe mouse	MODERN SPECIES	3426	ENSMSIG00000028640	ENSMSIG00000028634	Slc16a9 (ENSMSIG00000028631)	Fam13c (ENSMSIG00000028472)	Phyhipl (ENSMSIG00000028466)	ENSMSIG00000028456	Bicc1 (ENSMSIG00000028404)	ENSMSIG00000028403	Tfam (ENSMSIG00000028387)	ENSMSIG00000028381	Cisd1 (ENSMSIG00000028376)	Ipmk (ENSMSIG00000028351)	ENSMSIG00000028339	ENSMSIG00000028319	Zwint (ENSMSIG00000028302)	ENSMSIG00000028293 ##22	Pcdh15 (ENSMSIG00000006449)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	168	Lox (ENSJJAG00000012805)	1700034E13Rik (ENSJJAG00000012621)	ENSJJAG00000012299	Sncaip (ENSJJAG00000010838)	Snx2 (ENSJJAG00000009054)	Snx24 (ENSJJAG00000005328)	Ppic (ENSJJAG00000001551)	Prdm6 (ENSJJAG00000000894)	Cep120 (ENSJJAG00000022675)	Csnk1g3 (ENSJJAG00000021692)	Zfp608 (ENSJJAG00000021213)	Gramd3 (ENSJJAG00000020204)	Aldh7a1 (ENSJJAG00000018282)	ENSJJAG00000017266	Tex43 (ENSJJAG00000016971)	ENSJJAG00000016790 ##22	ENSJJAG00000016539	Lmnb1 (ENSJJAG00000016492)	Marchf3 (ENSJJAG00000016326)	C330018D20Rik (ENSJJAG00000015949)	Megf10 (ENSJJAG00000014323)
Lesser Egyptian jerboa	MODERN SPECIES	180	Gmnn (ENSJJAG00000022915)	ENSJJAG00000022518	Acot13 (ENSJJAG00000021876)	Tdp2 (ENSJJAG00000021685)	Aldh5a1 (ENSJJAG00000021445)	Gpld1 (ENSJJAG00000019958)	Mrs2 (ENSJJAG00000018110)	Tom1l1 (ENSJJAG00000016468)	ENSJJAG00000015825	Stxbp4 (ENSJJAG00000015241)	Hlf (ENSJJAG00000014709)	ENSJJAG00000013972	Tmem100 (ENSJJAG00000013082)	Pctp (ENSJJAG00000000610)	Ankfn1 (ENSJJAG00000000109)	ENSJJAG00000023126 ##22	ENSJJAG00000023053	Nog (ENSJJAG00000013985)	Gm525 (ENSJJAG00000022695)	Dgke (ENSJJAG00000022410)	Trim25 (ENSJJAG00000021683)	Coil (ENSJJAG00000021225)	Scpep1 (ENSJJAG00000020526)	Akap1 (ENSJJAG00000010284)	ENSJJAG00000009789	ENSJJAG00000009467	ENSJJAG00000006292	Ccdc182 (ENSJJAG00000013314)	Mrps23 (ENSJJAG00000002424)	Cuedc1 (ENSJJAG00000000173)	Vezf1 (ENSJJAG00000000454)
Lesser Egyptian jerboa	MODERN SPECIES	102	ENSJJAG00000004119	Dync1li2 (ENSJJAG00000014752)	Cmtm4 (ENSJJAG00000019660)	Cmtm3 (ENSJJAG00000020505)	ENSJJAG00000014677	ENSJJAG00000000150	Tk2 (ENSJJAG00000010805)	Bean1 (ENSJJAG00000011889)	Cdh5 (ENSJJAG00000018476)	ENSJJAG00000023995	ENSJJAG00000005625	Cdh11 (ENSJJAG00000013192)	ENSJJAG00000014411	ENSJJAG00000001226	ENSJJAG00000009504	ENSJJAG00000018972 ##22	Got2 (ENSJJAG00000020469)	ENSJJAG00000022746	Slc38a7 (ENSJJAG00000021200)	Cnot1 (ENSJJAG00000000633)	Setd6 (ENSJJAG00000021134)	Ndrg4 (ENSJJAG00000016427)	Gins3 (ENSJJAG00000012705)	Prss54 (ENSJJAG00000015278)	Ccdc113 (ENSJJAG00000020234)	Mmp15 (ENSJJAG00000013467)	Usb1 (ENSJJAG00000021859)	Zfp319 (ENSJJAG00000000816)	ENSJJAG00000013610	ENSJJAG00000021723	Cngb1 (ENSJJAG00000014030)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	43	Obi1 (ENSJJAG00000017901)	Pou4f1 (ENSJJAG00000020991)	ENSJJAG00000001253	Ednrb (ENSJJAG00000013624)	Slain1 (ENSJJAG00000010146)	Scel (ENSJJAG00000012152)	Mycbp2 (ENSJJAG00000022162)	Fbxl3 (ENSJJAG00000018852)	Cln5 (ENSJJAG00000021527)	Acod1 (ENSJJAG00000018366)	Kctd12 (ENSJJAG00000002585)	Lmo7 (ENSJJAG00000017007)	ENSJJAG00000013427	Commd6 (ENSJJAG00000023031)	Tbc1d4 (ENSJJAG00000019312)	ENSJJAG00000012306 ##22	Klf12 (ENSJJAG00000020757)	Fundc2b (ENSJJAG00000018597)	Klf5 (ENSJJAG00000019003)	Pibf1 (ENSJJAG00000016369)	Dis3 (ENSJJAG00000011607)	Bora (ENSJJAG00000022242)	ENSJJAG00000016515	Dach1 (ENSJJAG00000000600)	ENSJJAG00000017740	ENSJJAG00000001120	Klhl1 (ENSJJAG00000011220)	ENSJJAG00000011337	ENSJJAG00000000702	Pcdh9 (ENSJJAG00000009893)	ENSJJAG00000006345
Lesser Egyptian jerboa	MODERN SPECIES	58	Nsd2 (ENSJJAG00000012992)	Letm1 (ENSJJAG00000024090)	Fgfr3 (ENSJJAG00000001873)	Tacc3 (ENSJJAG00000015964)	ENSJJAG00000015175	ENSJJAG00000020549	ENSJJAG00000019010	ENSJJAG00000022694	Nkx1-1 (ENSJJAG00000017578)	Uvssa (ENSJJAG00000000552)	Maea (ENSJJAG00000018909)	Ctbp1 (ENSJJAG00000022277)	Spon2 (ENSJJAG00000010729)	Tmed11 (ENSJJAG00000021956)	Rnf212 (ENSJJAG00000023907)	ENSJJAG00000022256 ##22	Fgfrl1 (ENSJJAG00000012607)	Idua (ENSJJAG00000010185)	Slc26a1 (ENSJJAG00000024417)	Dgkq (ENSJJAG00000000943)	Tmem175 (ENSJJAG00000019864)	ENSJJAG00000011664	Cplx1 (ENSJJAG00000017665)	Pcgf3 (ENSJJAG00000014201)	Mfsd7a (ENSJJAG00000022347)	Atp5k (ENSJJAG00000012024)	Pde6b (ENSJJAG00000008660)	Pigg (ENSJJAG00000009749)	ENSJJAG00000013791	ENSJJAG00000010251	Rab28 (ENSJJAG00000016647)
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.e ##22
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00940000160049	ENSGT00760000119398.h	ENSGT00940000162433	ENSGT00940000153137.a.a	ENSGT00390000016475.h	ENSGT00390000009228.b	ENSGT00940000156054	ENSGT00940000160024	ENSGT00940000161265	ENSGT00940000154405.a.b	ENSGT00940000154405.a.a	ENSGT00940000162772	ENSGT00940000158365	ENSGT00940000157367	ENSGT00390000017606.a.a.j	ENSGT00940000154431.e.a.e.a ##22	ENSGT00950000182935.B.b.c	ENSGT00510000048276	ENSGT00390000008221	ENSGT00390000013127.a	ENSGT00530000063801.a	ENSGT00390000016774	ENSGT00940000158594	ENSGT00940000161730	ENSGT00940000157307	ENSGT00940000160998	ENSGT00940000155813	ENSGT00950000183122.C.c.a	ENSGT00940000157282	ENSGT00950000182979.a.b.b.a	ENSGT00940000154272.B
Arctic ground squirrel	MODERN SPECIES	496	DMC1 (ENSUPAG00010022336)	ENSUPAG00010022332	CBY1 (ENSUPAG00010022328)	TOMM22 (ENSUPAG00010022327)	JOSD1 (ENSUPAG00010022326)	GTPBP1 (ENSUPAG00010022325)	SUN2 (ENSUPAG00010022310)	DNAL4 (ENSUPAG00010022304)	NPTXR (ENSUPAG00010022301)	CBX6 (ENSUPAG00010022300)	ENSUPAG00010022297	ENSUPAG00010022294	CBX7 (ENSUPAG00010022291)	PDGFB (ENSUPAG00010022290)	ENSUPAG00010022280	ENSUPAG00010022279 ##22	SYNGR1 (ENSUPAG00010022277)	TAB1 (ENSUPAG00010022276)
Squirrel	MODERN SPECIES	92	KDELR3 (ENSSTOG00000002629)	DDX17 (ENSSTOG00000013699)	DMC1 (ENSSTOG00000025006)	CBY1 (ENSSTOG00000010750)	TOMM22 (ENSSTOG00000030828)	JOSD1 (ENSSTOG00000024999)	GTPBP1 (ENSSTOG00000010766)	SUN2 (ENSSTOG00000026929)	DNAL4 (ENSSTOG00000022336)	NPTXR (ENSSTOG00000032195)	CBX6 (ENSSTOG00000022213)	ENSSTOG00000007125	CBX7 (ENSSTOG00000013366)	PDGFB (ENSSTOG00000022345)	RPL3 (ENSSTOG00000014559)	ENSSTOG00000025552 ##22	SYNGR1 (ENSSTOG00000023819)	TAB1 (ENSSTOG00000002357)	MGAT3 (ENSSTOG00000006745)	MIEF1 (ENSSTOG00000028799)	ATF4 (ENSSTOG00000025355)	RPS19BP1 (ENSSTOG00000008459)	CACNA1I (ENSSTOG00000025056)	ENTHD1 (ENSSTOG00000002219)	GRAP2 (ENSSTOG00000002229)	FAM83F (ENSSTOG00000023057)	TNRC6B (ENSSTOG00000008927)	ENSSTOG00000000979	SGSM3 (ENSSTOG00000002927)	MRTFA (ENSSTOG00000002947)	MCHR1 (ENSSTOG00000010032)
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a.e.b ##22
Squirrel	MODERN SPECIES	103												GNAQ (ENSSTOG00000024755)	GNA14 (ENSSTOG00000008680)	VPS13A (ENSSTOG00000008587)	ENSSTOG00000033146	ENSSTOG00000026412 ##22	PRUNE2 (ENSSTOG00000023589)	GCNT1 (ENSSTOG00000012068)	ENSSTOG00000027323	RFK (ENSSTOG00000012064)	ENSSTOG00000020987	PCSK5 (ENSSTOG00000012040)	OSTF1 (ENSSTOG00000023378)	NMRK1 (ENSSTOG00000000389)	CARNMT1 (ENSSTOG00000000385)	TRPM6 (ENSSTOG00000013271)	RORB (ENSSTOG00000013264)	ANXA1 (ENSSTOG00000023530)	ALDH1A1 (ENSSTOG00000003287)	TMC1 (ENSSTOG00000026081)	ENSSTOG00000012154
Marmotini	ANCESTRAL SPECIES	14	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a	ENSGT00940000155337	ENSGT00940000154186.a	ENSGT00390000001858	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556	ENSGT00960000190724	ENSGT00940000156841	ENSGT00940000154431.e.a.f ##22	ENSGT00940000156327	ENSGT00390000009597	ENSGT00390000015405	ENSGT00950000183091.A.b	ENSGT00390000018052	ENSGT00940000156530.c	ENSGT00390000004284	ENSGT00940000157885	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000164891	ENSGT00950000183015.A	ENSGT00940000156279	ENSGT00930000150969.A.c.b.b	ENSGT00930000150969.A.c.a
Alpin marmot	MODERN SPECIES	6	ENSMMMG00000006286	UGP2 (ENSMMMG00000006263)	VPS54 (ENSMMMG00000006188)	PELI1 (ENSMMMG00000006175)	LGALSL (ENSMMMG00000006152)	AFTPH (ENSMMMG00000006097)	ENSMMMG00000006048	ENSMMMG00000006042	SLC1A4 (ENSMMMG00000006026)	CEP68 (ENSMMMG00000005980)	RAB1A (ENSMMMG00000005929)	ACTR2 (ENSMMMG00000005910)	ENSMMMG00000005906	SPRED2 (ENSMMMG00000005882)	ENSMMMG00000005873	ENSMMMG00000005870 ##22	MEIS1 (ENSMMMG00000005763)	ENSMMMG00000005757	ENSMMMG00000005754	ETAA1 (ENSMMMG00000005704)	C1D (ENSMMMG00000005685)	DNAAF10 (ENSMMMG00000005668)	PNO1 (ENSMMMG00000005661)	PPP3R1 (ENSMMMG00000005651)	ENSMMMG00000005630	CNRIP1 (ENSMMMG00000005618)	PLEK (ENSMMMG00000005592)	FBXO48 (ENSMMMG00000005580)	APLF (ENSMMMG00000005578)	ENSMMMG00000005553	ARHGAP25 (ENSMMMG00000005520)
Marmotini_b	ANCESTRAL SPECIES	44	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a	ENSGT00940000155337	ENSGT00940000154186.a	ENSGT00390000001858	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556	ENSGT00960000190724	ENSGT00940000156841	ENSGT00940000154431.e.a.f ##22	ENSGT00940000156327	ENSGT00390000009597	ENSGT00390000015405	ENSGT00950000183091.A.b	ENSGT00390000018052	ENSGT00940000156530.c	ENSGT00390000004284	ENSGT00940000157885	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000164891	ENSGT00950000183015.A	ENSGT00940000156279	ENSGT00930000150969.A.c.b.b	ENSGT00930000150969.A.c.a
Squirrel	MODERN SPECIES	91	WDPCP (ENSSTOG00000014213)	MDH1 (ENSSTOG00000014227)	ENSSTOG00000023912	UGP2 (ENSSTOG00000000789)	VPS54 (ENSSTOG00000023517)	PELI1 (ENSSTOG00000026315)	LGALSL (ENSSTOG00000024204)	AFTPH (ENSSTOG00000020828)	ENSSTOG00000030042	SERTAD2 (ENSSTOG00000008454)	SLC1A4 (ENSSTOG00000025160)	CEP68 (ENSSTOG00000011479)	ENSSTOG00000020693	ACTR2 (ENSSTOG00000012608)	SPRED2 (ENSSTOG00000022318)	ENSSTOG00000024155 ##22	MEIS1 (ENSSTOG00000009914)	ETAA1 (ENSSTOG00000027144)	C1D (ENSSTOG00000012346)	DNAAF10 (ENSSTOG00000024192)	PNO1 (ENSSTOG00000026989)	PPP3R1 (ENSSTOG00000025985)	CNRIP1 (ENSSTOG00000004875)	PLEK (ENSSTOG00000014667)	FBXO48 (ENSSTOG00000014675)	APLF (ENSSTOG00000014677)	ENSSTOG00000010343	ARHGAP25 (ENSSTOG00000010347)	BMP10 (ENSSTOG00000010358)	ENSSTOG00000025416	GKN2 (ENSSTOG00000010364)
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Degu	MODERN SPECIES	476																ENSODEG00000018537 ##22
Long-tailed chinchilla	MODERN SPECIES	149	IFT140 (ENSCLAG00000013535)	CRAMP1 (ENSCLAG00000013881)	JPT2 (ENSCLAG00000014793)	MAPK8IP3 (ENSCLAG00000014643)	NME3 (ENSCLAG00000015018)	MRPS34 (ENSCLAG00000015224)	EME2 (ENSCLAG00000015876)	SPSB3 (ENSCLAG00000013801)	NUBP2 (ENSCLAG00000015595)	IGFALS (ENSCLAG00000014739)	HAGH (ENSCLAG00000013689)	ENSCLAG00000012822	HS3ST6 (ENSCLAG00000011879)	MSRB1 (ENSCLAG00000016348)	RPL3L (ENSCLAG00000015614)	ENSCLAG00000016182 ##22	NDUFB10 (ENSCLAG00000013856)	ENSCLAG00000016080	RNF151 (ENSCLAG00000014779)	TBL3 (ENSCLAG00000013342)	NOXO1 (ENSCLAG00000012905)	GFER (ENSCLAG00000013056)	SYNGR3 (ENSCLAG00000014459)	ZNF598 (ENSCLAG00000012014)	NPW (ENSCLAG00000014103)	NHERF2 (ENSCLAG00000013193)	NTHL1 (ENSCLAG00000011819)	TSC2 (ENSCLAG00000013345)	PKD1 (ENSCLAG00000013843)	RAB26 (ENSCLAG00000016173)	TRAF7 (ENSCLAG00000015631)
Marsupialia	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00940000154431.e.a ##22
Wallaby	MODERN SPECIES	220																ENSMEUG00000001826 ##22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000030075	ENSSHAG00000031651	ENSSHAG00000002394	ENSSHAG00000022787	ENSSHAG00000003450	ENSSHAG00000026385	ENSSHAG00000022721	ENSSHAG00000025179	ENSSHAG00000000629	ENSSHAG00000026435	ENSSHAG00000028152	ENSSHAG00000031384	ENSSHAG00000004787	ENSSHAG00000020509	ENSSHAG00000031286	ENSSHAG00000030499 ##22	ENSSHAG00000026147	ENSSHAG00000005163	ENSSHAG00000030363	ENSSHAG00000030960	ENSSHAG00000003672	MYH14 (ENSSHAG00000020773)	KCNC3 (ENSSHAG00000025876)	ENSSHAG00000027475	ENSSHAG00000031242	SHANK1 (ENSSHAG00000021284)	ASPDH (ENSSHAG00000000815)	ENSSHAG00000023861	ENSSHAG00000029941	ENSSHAG00000021536	ENSSHAG00000028885
Theria	ANCESTRAL SPECIES	207															ENSGT00940000153305.d ##21	ENSGT00940000154431.f ##22
Eutheria	ANCESTRAL SPECIES	129															ENSGT00940000153305.c.f ##21	ENSGT00940000154431.f ##22
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1627																ENSDNOG00000043784 ##22
Armadillo	MODERN SPECIES	1800															RSPH3 (ENSDNOG00000008063)	ENSDNOG00000046740 ##22	TAGAP (ENSDNOG00000039249)	FNDC1 (ENSDNOG00000033834)
Afrotheria	ANCESTRAL SPECIES	5	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.e.b #22	ENSGT00940000154431.f ##22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405 #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Afrotheria_a	ANCESTRAL SPECIES	5	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.f ##22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405 #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36	ENSGT00950000183188.B #37
Hyrax	MODERN SPECIES	1755															CBX3 (ENSPCAG00000004904) #21	ENSPCAG00000004832 ##22
Elephant	MODERN SPECIES	428	EVX1 (ENSLAFG00000001942) #7	HOXA13 (ENSLAFG00000000738) #8	HOXA11 (ENSLAFG00000005482) #9	HOXA10 (ENSLAFG00000030920) #10	HOXA9 (ENSLAFG00000008970) #11	HOXA7 (ENSLAFG00000002101) #12	HOXA6 (ENSLAFG00000006281) #13	HOXA5 (ENSLAFG00000026981) #14	HOXA4 (ENSLAFG00000008965) #15	HOXA3 (ENSLAFG00000023253) #16	HOXA2 (ENSLAFG00000001565) #17	HOXA1 (ENSLAFG00000001615) #18	SKAP2 (ENSLAFG00000021410) #19	SNX10 (ENSLAFG00000008687) #20	ENSLAFG00000006907 #21	HNRNPA2B1 (ENSLAFG00000006902) ##22	NFE2L3 (ENSLAFG00000006898) #23	NPVF (ENSLAFG00000008838) #24	ENSLAFG00000023244 #25	CYCS (ENSLAFG00000006894) #26	OSBPL3 (ENSLAFG00000016197) #27	GSDME (ENSLAFG00000009797) #28	PALS2 (ENSLAFG00000009793) #29	NPY (ENSLAFG00000031995) #30	STK31 (ENSLAFG00000009258) #31	FAM221A (ENSLAFG00000016907) #32	CCDC126 (ENSLAFG00000008792) #33	TRA2A (ENSLAFG00000006598) #34	IGF2BP3 (ENSLAFG00000011924) #35	MALSU1 (ENSLAFG00000011921) #36	GPNMB (ENSLAFG00000022142) #37
Boreoeutheria	ANCESTRAL SPECIES	72															ENSGT00940000153305.c.f ##21	ENSGT00940000154431.f ##22
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00940000154431.f ##22	ENSGT00950000183069.b	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000164486	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a
Eulipotyphla	ANCESTRAL SPECIES	888															ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.f ##22	ENSGT00950000182892.a.b.b #23
Common shrew	MODERN SPECIES	2557															CBX3 (ENSSARG00000008011) #21	ENSSARG00000007984 ##22	NFE2L3 (ENSSARG00000007961) #23
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Giant Panda	MODERN SPECIES	1724																ENSAMEG00000025072 ##22
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Chiroptera	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Microchiroptera	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Microbat	MODERN SPECIES	1357																ENSMLUG00000028687 ##22	ENSMLUG00000023690	DMAC2 (ENSMLUG00000025213)	B3GNT8 (ENSMLUG00000007859)	BCKDHA (ENSMLUG00000007821)	EXOSC5 (ENSMLUG00000013104)	B9D2 (ENSMLUG00000023056)	TGFB1 (ENSMLUG00000013098)	CCDC97 (ENSMLUG00000023105)	HNRNPUL1 (ENSMLUG00000013084)	AXL (ENSMLUG00000013069)	CYP2S1 (ENSMLUG00000013059)	ENSMLUG00000009670	CYP2B6 (ENSMLUG00000028590)	ENSMLUG00000007247	ENSMLUG00000027238
Artiodactyla	ANCESTRAL SPECIES	23	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00940000154431.f ##22
Artiodactyla_a	DUPLICATION
Artiodactyla_a	DUPLICATION
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Pecora	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Cow	MODERN SPECIES	23	HOXA11 (ENSBTAG00000014738) #9	HOXA10 (ENSBTAG00000040082)	ENSBTAG00000048562 #10	HOXA9 (ENSBTAG00000053595) #11	HOXA7 (ENSBTAG00000001455) #12	HOXA6 (ENSBTAG00000024341) #13	HOXA5 (ENSBTAG00000012211) #14	HOXA3 (ENSBTAG00000008139) #16	HOXA4 (ENSBTAG00000001063) #15	HOXA2 (ENSBTAG00000008138) #17	HOXA1 (ENSBTAG00000013263) #18	ENSBTAG00000047863	SKAP2 (ENSBTAG00000005650) #19	SNX10 (ENSBTAG00000001822) #20	CBX3 (ENSBTAG00000049437) #21	HNRNPA2B1 (ENSBTAG00000005726) ##22	NFE2L3 (ENSBTAG00000004136) #23	NPVF (ENSBTAG00000019447) #24	C4H7orf31 (ENSBTAG00000019445) #25	CYCS (ENSBTAG00000022613)	OSBPL3 (ENSBTAG00000019342) #27	ENSBTAG00000046586	GSDME (ENSBTAG00000015326) #28	PALS2 (ENSBTAG00000015303) #29	NPY (ENSBTAG00000004503) #30	STK31 (ENSBTAG00000010609) #31	FAM221A (ENSBTAG00000018064) #32	ADAM22 (ENSBTAG00000007136)	ENSBTAG00000024334	SRI (ENSBTAG00000010390)	STEAP4 (ENSBTAG00000002340)
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Goat	MODERN SPECIES	13	WDR20 (ENSCHIG00000006874)	ENSCHIG00000012619	ENSCHIG00000014686	CINP (ENSCHIG00000021794)	TECPR2 (ENSCHIG00000015446)	ANKRD9 (ENSCHIG00000024878)	RCOR1 (ENSCHIG00000020773)	TRAF3 (ENSCHIG00000026463)	AMN (ENSCHIG00000008517)	CDC42BPB (ENSCHIG00000025348)	LBHD2 (ENSCHIG00000016749)	EXOC3L4 (ENSCHIG00000012030)	ENSCHIG00000015133	ENSCHIG00000006615	ENSCHIG00000009953	ENSCHIG00000011000 ##22	EIF5 (ENSCHIG00000021283)	MARK3 (ENSCHIG00000018506)	CKB (ENSCHIG00000017850)	TRMT61A (ENSCHIG00000021168)	BAG5 (ENSCHIG00000011895)	COA8 (ENSCHIG00000024142)	KLC1 (ENSCHIG00000017179)	XRCC3 (ENSCHIG00000021019)	ZFYVE21 (ENSCHIG00000012789)	PPP1R13B (ENSCHIG00000018367)	ENSCHIG00000015712	TDRD9 (ENSCHIG00000011541)	RD3L (ENSCHIG00000025061)	ASPG (ENSCHIG00000025636)	ENSCHIG00000026025
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.a ##22
Vaquita	MODERN SPECIES	1								USP18 (ENSPSNG00000022655)	TUBA8 (ENSPSNG00000022654)	PEX26 (ENSPSNG00000022653)	ENSPSNG00000022651	MICAL3 (ENSPSNG00000022650)	ENSPSNG00000022649	ENSPSNG00000022648	ATP6V1E1 (ENSPSNG00000022647)	ENSPSNG00000022646 ##22	ENSPSNG00000022645	CECR2 (ENSPSNG00000022644)	ADA2 (ENSPSNG00000022643)	HDHD5 (ENSPSNG00000022642)	ENSPSNG00000022641	IL17RA (ENSPSNG00000022640)	CACNA1C (ENSPSNG00000016230)	DCP1B (ENSPSNG00000010585)	ENSPSNG00000010394	LRTM2 (ENSPSNG00000010328)	ENSPSNG00000010069	ADIPOR2 (ENSPSNG00000009990)	ENSPSNG00000009947	WNT5B (ENSPSNG00000009862)	FBXL14 (ENSPSNG00000013028)
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.b ##22
Camelidae	ANCESTRAL SPECIES	2	ENSGT00940000159854 #7	ENSGT00930000152153	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000159522 #16	ENSGT00940000155029.c.a	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.f.c.b ##22	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.b.o.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Arabian camel	MODERN SPECIES	33	ENSCDRG00005001177 #7	ENSCDRG00005001165	HOXA13 (ENSCDRG00005001129) #8	HOXA11 (ENSCDRG00005001112) #9	HOXA10 (ENSCDRG00005001092) #10	HOXA9 (ENSCDRG00005001067) #11	HOXA7 (ENSCDRG00005001043) #12	HOXA6 (ENSCDRG00005001033) #13	HOXA5 (ENSCDRG00005001022) #14	HOXA3 (ENSCDRG00005000976) #16	ENSCDRG00005000963	HOXA1 (ENSCDRG00005000950) #18	SKAP2 (ENSCDRG00005000915) #19	SNX10 (ENSCDRG00005000870) #20	CBX3 (ENSCDRG00005000839) #21	HNRNPA2B1 (ENSCDRG00005000755) ##22	NFE2L3 (ENSCDRG00005000723) #23	ENSCDRG00005000704	NPVF (ENSCDRG00005000692) #24	C7orf31 (ENSCDRG00005000664) #25	CYCS (ENSCDRG00005000650) ##26	OSBPL3 (ENSCDRG00005000550) #27	GSDME (ENSCDRG00005000498) #28	PALS2 (ENSCDRG00005000457) #29	ENSCDRG00005000443 #30	ENSCDRG00005000392 #31	ENSCDRG00005000362 #31	FAM221A (ENSCDRG00005000304) #32	CCDC126 (ENSCDRG00005000272) #33	TRA2A (ENSCDRG00005000208) #34	IGF2BP3 (ENSCDRG00005000158) #35
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.b ##22
Pecora	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.b ##22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.b ##22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.b ##22
Bovinae	ANCESTRAL SPECIES	8	ENSGT00940000154156.d	ENSGT00390000014201	ENSGT00940000162027	ENSGT00940000161477	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00390000013208	ENSGT00390000003224.B	ENSGT00940000160243	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00940000159484	ENSGT00940000157206	ENSGT00940000154431.f.c.b ##22	ENSGT00950000182981.b.f.a.f	ENSGT00400000022095.a	ENSGT00640000091917	ENSGT00390000006835	ENSGT00390000005102.f	ENSGT00390000004852.a.b	ENSGT00390000006086	ENSGT00940000155977	ENSGT00390000013963	ENSGT00390000015907	ENSGT00940000161774	ENSGT00940000161666	ENSGT00940000158082.b	ENSGT00390000002222	ENSGT00510000047602
Bos	ANCESTRAL SPECIES	8	ENSGT00940000154156.d	ENSGT00390000014201	ENSGT00940000162027.b	ENSGT00940000161477	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00390000013208.ob	ENSGT00390000003224.B	ENSGT00940000160243	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00940000159484	ENSGT00940000157206	ENSGT00940000154431.f.c.b ##22	ENSGT00950000182981.b.f.a.f	ENSGT00400000022095.a	ENSGT00640000091917	ENSGT00390000006835	ENSGT00390000005102.f	ENSGT00390000004852.a.b	ENSGT00390000006086	ENSGT00940000155977	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.a.a.a.a	ENSGT00390000013963	ENSGT00390000015907	ENSGT00940000161774	ENSGT00940000161666	ENSGT00940000158082.b	ENSGT00390000002222
Bos_b	ANCESTRAL SPECIES	7	ENSGT00530000064743	ENSGT00940000154156.d	ENSGT00940000162027.b	ENSGT00940000161477	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00390000013208.ob	ENSGT00390000003224.B	ENSGT00940000160243	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00940000159484	ENSGT00940000157206	ENSGT00940000154431.f.c.b ##22	ENSGT00950000182981.b.f.a.f	ENSGT00400000022095.a	ENSGT00390000006835	ENSGT00390000005102.f	ENSGT00390000004852.a.b	ENSGT00390000006086.a	ENSGT00940000155977	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.a.a.a.a	ENSGT00390000013963	ENSGT00390000015907	ENSGT00940000161774	ENSGT00940000161666	ENSGT00940000158082.b	ENSGT00390000002222	ENSGT00510000047602
Hybrid Bos Indicus	MODERN SPECIES	23	ENSBIXG00005004012	IMPDH1 (ENSBIXG00005023654)	ENSBIXG00005004057	GARIN1A (ENSBIXG00005006904)	OPN1SW (ENSBIXG00005023745)	ENSBIXG00005024008	CCDC136 (ENSBIXG00005024099)	FLNC (ENSBIXG00005024221)	ENSBIXG00005024244	ATP6V1FNB (ENSBIXG00005024258)	KCP (ENSBIXG00005024276)	IRF5 (ENSBIXG00005024387)	TNPO3 (ENSBIXG00005024544)	TSPAN33 (ENSBIXG00005024609)	SMO (ENSBIXG00005004209)	ENSBIXG00005024648 ##22	AHCYL2 (ENSBIXG00005024776)	STRIP2 (ENSBIXG00005024926)	NRF1 (ENSBIXG00005025039)	ENSBIXG00005025101	ENSBIXG00005025153	ENSBIXG00005025251	KLHDC10 (ENSBIXG00005025331)	ENSBIXG00005025353	TMEM209 (ENSBIXG00005025529)	SSMEM1 (ENSBIXG00005007193)	CPA4 (ENSBIXG00005025635)	CPA5 (ENSBIXG00005025741)	CPA1 (ENSBIXG00005025764)	CEP41 (ENSBIXG00005025834)	MEST (ENSBIXG00005025986)
Cow	MODERN SPECIES	23	IMPDH1 (ENSBTAG00000000296)	GARIN1A (ENSBTAG00000024291)	GARIN1B (ENSBTAG00000009867)	CALU (ENSBTAG00000016481)	OPN1SW (ENSBTAG00000016485)	CCDC136 (ENSBTAG00000011002)	FLNC (ENSBTAG00000006253)	ATP6V1F (ENSBTAG00000007572)	ATP6V1FNB (ENSBTAG00000045645)	KCP (ENSBTAG00000003449)	IRF5 (ENSBTAG00000004989)	TNPO3 (ENSBTAG00000004992)	TSPAN33 (ENSBTAG00000007253)	SMO (ENSBTAG00000013287)	AHCYL2 (ENSBTAG00000001754)	ENSBTAG00000051697 ##22	STRIP2 (ENSBTAG00000007206)	NRF1 (ENSBTAG00000014273)	ENSBTAG00000047845	UBE2H (ENSBTAG00000000911)	ZC3HC1 (ENSBTAG00000011247)	KLHDC10 (ENSBTAG00000000548)	TMEM209 (ENSBTAG00000015588)	ENSBTAG00000055228	SSMEM1 (ENSBTAG00000013473)	CPA4 (ENSBTAG00000046648)	CPA5 (ENSBTAG00000013476)	CPA1 (ENSBTAG00000046169)	CEP41 (ENSBTAG00000007413)	MEST (ENSBTAG00000017223)	COPG2 (ENSBTAG00000017245)
American bison	MODERN SPECIES	3374	IMPDH1 (ENSBBBG00000002924)	ENSBBBG00000002928	GARIN1A (ENSBBBG00000013741)	GARIN1B (ENSBBBG00000013746)	CALU (ENSBBBG00000002950)	OPN1SW (ENSBBBG00000013791)	ENSBBBG00000002958	FLNC (ENSBBBG00000003024)	ATP6V1F (ENSBBBG00000013933)	ATP6V1FNB (ENSBBBG00000013937)	KCP (ENSBBBG00000003212)	IRF5 (ENSBBBG00000003226)	TNPO3 (ENSBBBG00000003272)	ENSBBBG00000001413	SMO (ENSBBBG00000014370)	ENSBBBG00000001412 ##22	AHCYL2 (ENSBBBG00000003347)	STRIP2 (ENSBBBG00000014505)	SMKR1 (ENSBBBG00000014511)	NRF1 (ENSBBBG00000014541)	ENSBBBG00000014555	UBE2H (ENSBBBG00000008909)	ZC3HC1 (ENSBBBG00000008289)	KLHDC10 (ENSBBBG00000003482)	TMEM209 (ENSBBBG00000014646)	SSMEM1 (ENSBBBG00000014667)	CPA4 (ENSBBBG00000014707)	CPA5 (ENSBBBG00000014792)	CPA1 (ENSBBBG00000014815)	CEP41 (ENSBBBG00000014879)	MEST (ENSBBBG00000001080)
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.b ##22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.b ##22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f.c.b ##22
Odontoceti_b	ANCESTRAL SPECIES	24	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C	ENSGT00940000158976	ENSGT00910000147851	ENSGT00510000048674	ENSGT00940000154006.b	ENSGT00390000018559	ENSGT00950000183203.d.g	ENSGT00940000161343	ENSGT00940000160488.a	ENSGT00510000047471	ENSGT00940000156009.A	ENSGT00940000154503.a	ENSGT00390000000378.d.a	ENSGT00940000154431.f.c.b ##22	ENSGT00940000155585	ENSGT00940000155932	ENSGT00390000006762	ENSGT00390000009030	ENSGT00390000014787	ENSGT00940000155420.b	ENSGT00390000001360	ENSGT00940000156193	ENSGT00390000004832	ENSGT00940000160741	ENSGT00940000158604	ENSGT00390000006555	ENSGT00390000006009.a.a.a	ENSGT00940000159856	ENSGT00960000193237
Monodontidae	ANCESTRAL SPECIES	29	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C	ENSGT00940000158976	ENSGT00910000147851	ENSGT00510000048674	ENSGT00940000154006.b	ENSGT00390000018559	ENSGT00950000183203.d.g	ENSGT00940000161343	ENSGT00940000160488.a	ENSGT00510000047471	ENSGT00940000156009.A	ENSGT00940000154503.a	ENSGT00390000000378.d.a	ENSGT00940000154431.f.c.b ##22	ENSGT00940000155585	ENSGT00940000155932	ENSGT00390000006762	ENSGT00390000009030	ENSGT00940000155420.b	ENSGT00390000001360	ENSGT00940000156193	ENSGT00390000004832	ENSGT00940000160741	ENSGT00940000158604	ENSGT00390000006555	ENSGT00390000006009.a.a.a	ENSGT00940000159856	ENSGT00960000193237	ENSGT00940000154322.A
Narwhal	MODERN SPECIES	316	RAD51C (ENSMMNG00015017634)	TEX14 (ENSMMNG00015017498)	ENSMMNG00015017462	ENSMMNG00015017089	MTMR4 (ENSMMNG00015016932)	HSF5 (ENSMMNG00015016882)	RNF43 (ENSMMNG00015016811)	SUPT4H1 (ENSMMNG00015016756)	TSPOAP1 (ENSMMNG00015016415)	MPO (ENSMMNG00015016254)	LPO (ENSMMNG00015016133)	MKS1 (ENSMMNG00015015988)	EPX (ENSMMNG00015015929)	OR4D2 (ENSMMNG00015015903)	DYNLL2 (ENSMMNG00015015874)	HNRNPA2B1 (ENSMMNG00015015857) ##22	SRSF1 (ENSMMNG00015015822)	VEZF1 (ENSMMNG00015015780)	CUEDC1 (ENSMMNG00015015732)	MRPS23 (ENSMMNG00015015713)	MSI2 (ENSMMNG00015015645)	AKAP1 (ENSMMNG00015015586)	SCPEP1 (ENSMMNG00015015557)	COIL (ENSMMNG00015015540)	TRIM25 (ENSMMNG00015015518)	DGKE (ENSMMNG00015015505)	C17orf67 (ENSMMNG00015015494)	NOG (ENSMMNG00015015489)	ANKFN1 (ENSMMNG00015015459)	ENSMMNG00015015440	TMEM100 (ENSMMNG00015015428)
Beluga whale	MODERN SPECIES	40	TEX14 (ENSDLEG00000006938)	SEPT4 (ENSDLEG00000006877)	MTMR4 (ENSDLEG00000006847)	ENSDLEG00000006839	HSF5 (ENSDLEG00000006830)	RNF43 (ENSDLEG00000006821)	SUPT4H1 (ENSDLEG00000006789)	TSPOAP1 (ENSDLEG00000006737)	MPO (ENSDLEG00000006704)	ENSDLEG00000006698	ENSDLEG00000006692	MKS1 (ENSDLEG00000006682)	EPX (ENSDLEG00000006660)	OR4D2 (ENSDLEG00000006654)	DYNLL2 (ENSDLEG00000006648)	HNRNPA2B1 (ENSDLEG00000006647) ##22	SRSF1 (ENSDLEG00000006624)	VEZF1 (ENSDLEG00000006620)	CUEDC1 (ENSDLEG00000006616)	MRPS23 (ENSDLEG00000006600)	MSI2 (ENSDLEG00000006585)	AKAP1 (ENSDLEG00000006574)	SCPEP1 (ENSDLEG00000006562)	COIL (ENSDLEG00000006551)	TRIM25 (ENSDLEG00000006532)	DGKE (ENSDLEG00000006524)	C17orf67 (ENSDLEG00000006521)	NOG (ENSDLEG00000006518)	ENSDLEG00000006513	ENSDLEG00000006507	TMEM100 (ENSDLEG00000006500)
Vaquita	MODERN SPECIES	12	PPM1E (ENSPSNG00000019275)	RAD51C (ENSPSNG00000019147)	TEX14 (ENSPSNG00000018249)	SEPTIN4 (ENSPSNG00000017836)	MTMR4 (ENSPSNG00000017089)	HSF5 (ENSPSNG00000016971)	RNF43 (ENSPSNG00000016739)	SUPT4H1 (ENSPSNG00000016618)	TSPOAP1 (ENSPSNG00000015927)	MPO (ENSPSNG00000015693)	LPO (ENSPSNG00000015320)	MKS1 (ENSPSNG00000015027)	EPX (ENSPSNG00000014828)	OR4D2 (ENSPSNG00000014791)	DYNLL2 (ENSPSNG00000014740)	ENSPSNG00000014715 ##22	SRSF1 (ENSPSNG00000014561)	VEZF1 (ENSPSNG00000014426)	CUEDC1 (ENSPSNG00000014362)	MRPS23 (ENSPSNG00000014279)	CCDC182 (ENSPSNG00000014250)	MSI2 (ENSPSNG00000013991)	AKAP1 (ENSPSNG00000013873)	SCPEP1 (ENSPSNG00000013724)	COIL (ENSPSNG00000013649)	TRIM25 (ENSPSNG00000013582)	DGKE (ENSPSNG00000013515)	C17orf67 (ENSPSNG00000013457)	NOG (ENSPSNG00000013424)	ANKFN1 (ENSPSNG00000012781)	ENSPSNG00000012632
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f.d ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f.d ##22
Cetacea	ANCESTRAL SPECIES	59															ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.f.d ##22
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000162440 #10	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00390000016010	ENSGT00940000159522 #16	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c.e.b #21	ENSGT00940000154431.f.d ##22	ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.e.b #22	ENSGT00950000182892.a.b.b #23	ENSGT01030000235330.c.a	ENSGT00390000003271 #24	ENSGT00390000009405.b.o.b ##26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f.d ##22
Dolphin	MODERN SPECIES	468														SNX10 (ENSTTRG00000000713) #20	CBX3 (ENSTTRG00000000711) #21	HNRNPA2B1 (ENSTTRG00000000709) ##22	NFE2L3 (ENSTTRG00000000707) #23
Blue whale	MODERN SPECIES	14	TTC1 (ENSBMSG00010010355)	ADRA1B (ENSBMSG00010010374)	ENSBMSG00010010381	IL12B (ENSBMSG00010010391)	ENSBMSG00010010400	RNF145 (ENSBMSG00010010449)	KCNMB1 (ENSBMSG00010010631)	ENSBMSG00010010657	GABRP (ENSBMSG00010010718)	RANBP17 (ENSBMSG00010010778)	TLX3 (ENSBMSG00010010805)	ENSBMSG00010010827	FGF18 (ENSBMSG00010010843)	SMIM23 (ENSBMSG00010010861)	FBXW11 (ENSBMSG00010010896)	ENSBMSG00010010999 ##22	STK10 (ENSBMSG00010011007)	ENSBMSG00010011019	EFCAB9 (ENSBMSG00010011022)	UBTD2 (ENSBMSG00010011030)	ENSBMSG00010011045	SH3PXD2B (ENSBMSG00010011059)	NEURL1B (ENSBMSG00010011096)	DUSP1 (ENSBMSG00010011183)	ERGIC1 (ENSBMSG00010011201)	RPL26L1 (ENSBMSG00010011223)	ENSBMSG00010011236	CREBRF (ENSBMSG00010011255)	ENSBMSG00010011277	BNIP1 (ENSBMSG00010011290)	ENSBMSG00010011299
Pecora	ANCESTRAL SPECIES																	ENSGT00940000154431.f.d ##22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f.d ##22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000154431.f.d ##22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154431.f.d ##22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154431.f.d ##22
Bos_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f.d ##22
Domestic yak	MODERN SPECIES	23	ENSBGRG00000022825	ENSBGRG00000022817	ENSBGRG00000022771	GARIN1B (ENSBGRG00000022749)	CALU (ENSBGRG00000022337)	OPN1SW (ENSBGRG00000022278)	CCDC136 (ENSBGRG00000022169)	FLNC (ENSBGRG00000011802)	ENSBGRG00000011477	ATP6V1FNB (ENSBGRG00000011423)	KCP (ENSBGRG00000010458)	IRF5 (ENSBGRG00000010195)	TNPO3 (ENSBGRG00000009809)	TSPAN33 (ENSBGRG00000009713)	SMO (ENSBGRG00000009570)	ENSBGRG00000009523 ##22	AHCYL2 (ENSBGRG00000008318)	STRIP2 (ENSBGRG00000008162)	SMKR1 (ENSBGRG00000008134)	NRF1 (ENSBGRG00000008004)	ENSBGRG00000007949	UBE2H (ENSBGRG00000007819)	ZC3HC1 (ENSBGRG00000007498)	KLHDC10 (ENSBGRG00000007183)	ENSBGRG00000006705	TMEM209 (ENSBGRG00000006532)	SSMEM1 (ENSBGRG00000006487)	ENSBGRG00000006475	CPA4 (ENSBGRG00000006101)	CPA5 (ENSBGRG00000005976)	CPA1 (ENSBGRG00000005917)
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000154431.f.d ##22
Rambouillet Sheep	MODERN SPECIES	9	ENSOARG00020012559	ENSOARG00020012595	HSPCA (ENSOARG00020012664)	WDR20 (ENSOARG00020012746)	MOK (ENSOARG00020012890)	CINP (ENSOARG00020013201)	TECPR2 (ENSOARG00020013345)	ANKRD9 (ENSOARG00020013669)	RCOR1 (ENSOARG00020013701)	TRAF3 (ENSOARG00020013868)	AMN (ENSOARG00020014007)	CDC42BPB (ENSOARG00020014102)	LBHD2 (ENSOARG00020014332)	TNFAIP2 (ENSOARG00020014380)	ENSOARG00020014751	ENSOARG00020014771 ##22	EIF5 (ENSOARG00020014840)	MARK3 (ENSOARG00020015010)	CKB (ENSOARG00020016713)	TRMT61A (ENSOARG00020016758)	BAG5 (ENSOARG00020016804)	COA8 (ENSOARG00020016820)	KLC1 (ENSOARG00020016907)	ENSOARG00020017370	ZFYVE21 (ENSOARG00020017435)	PPP1R13B (ENSOARG00020017481)	ENSOARG00020017719	TDRD9 (ENSOARG00020017845)	RD3L (ENSOARG00020018479)	ASPG (ENSOARG00020018531)	KIF26A (ENSOARG00020018926)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	274											DCAF12L1 (ENSMMSG00000007050)	ACTRT1 (ENSMMSG00000007059)	ENSMMSG00000007074	SMARCA1 (ENSMMSG00000007101)	OCRL (ENSMMSG00000007211)	ENSMMSG00000007397 ##22	APLN (ENSMMSG00000007429)	XPNPEP2 (ENSMMSG00000007456)	SASH3 (ENSMMSG00000007610)	ZDHHC9 (ENSMMSG00000007655)	ENSMMSG00000007693	ENSMMSG00000007729	BCORL1 (ENSMMSG00000007957)	ELF4 (ENSMMSG00000008028)	AIFM1 (ENSMMSG00000008118)	RAB33A (ENSMMSG00000008485)	ZNF280C (ENSMMSG00000008530)	ENSMMSG00000008643	GPR119 (ENSMMSG00000008720)	RBMX2 (ENSMMSG00000008730)	ENSMMSG00000008761
Siberian musk deer	MODERN SPECIES	87	HOXA11 (ENSMMSG00000008748) #9	HOXA10 (ENSMMSG00000008727) #10	HOXA9 (ENSMMSG00000008679) #11	HOXA7 (ENSMMSG00000008650) #12	HOXA6 (ENSMMSG00000008621) #13	HOXA5 (ENSMMSG00000008606) #14	HOXA4 (ENSMMSG00000008591) #15	HOXA3 (ENSMMSG00000008574) #16	HOXA2 (ENSMMSG00000008551) #17	HOXA1 (ENSMMSG00000008512) #18	SKAP2 (ENSMMSG00000008475) #19	SNX10 (ENSMMSG00000008398) #20	CBX3 (ENSMMSG00000008333) #21	ENSMMSG00000008126 #22	NFE2L3 (ENSMMSG00000008071) #23	ENSMMSG00000008040 ##22	NPVF (ENSMMSG00000008017) #24	C7orf31 (ENSMMSG00000007922) #25	ENSMMSG00000007897 ##26	ENSMMSG00000007886	OSBPL3 (ENSMMSG00000007737) #27	GSDME (ENSMMSG00000007631) #28	PALS2 (ENSMMSG00000007548) #29	NPY (ENSMMSG00000007524) #30	STK31 (ENSMMSG00000007029) #31	FAM221A (ENSMMSG00000006804) #32	ADAM22 (ENSMMSG00000005953)	SRI (ENSMMSG00000005792)	STEAP4 (ENSMMSG00000013499)	ENSMMSG00000013478	ENSMMSG00000013469
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1250											RERGL (ENSMMSG00000022367)	PIK3C2G (ENSMMSG00000022404)	ENSMMSG00000022478	PLCZ1 (ENSMMSG00000022489)	CAPZA3 (ENSMMSG00000022519)	ENSMMSG00000022527 ##22	ENSMMSG00000022620	AEBP2 (ENSMMSG00000023141)	ENSMMSG00000023170	ENSMMSG00000023176	PDE3A (ENSMMSG00000023193)	SLCO1C1 (ENSMMSG00000023215)	ENSMMSG00000023253	SLCO1A2 (ENSMMSG00000023288)	IAPP (ENSMMSG00000023315)	PYROXD1 (ENSMMSG00000023323)	RECQL (ENSMMSG00000023332)	GOLT1B (ENSMMSG00000023349)	SPX (ENSMMSG00000023361)	GYS2 (ENSMMSG00000023372)	ENSMMSG00000023385
Siberian musk deer	MODERN SPECIES	1222															CHL1 (ENSMMSG00000016568)	ENSMMSG00000016517 ##22	CNTN3 (ENSMMSG00000016378)	PDZRN3 (ENSMMSG00000016262)	PPP4R2 (ENSMMSG00000016216)	GXYLT2 (ENSMMSG00000016163)	SHQ1 (ENSMMSG00000016133)	RYBP (ENSMMSG00000016107)	PROK2 (ENSMMSG00000016060)	GPR27 (ENSMMSG00000016039)	EIF4E3 (ENSMMSG00000015972)	FOXP1 (ENSMMSG00000014620)	MDFIC2 (ENSMMSG00000014534)	MITF (ENSMMSG00000013971)	FRMD4B (ENSMMSG00000013878)	LMOD3 (ENSMMSG00000013861)	ARL6IP5 (ENSMMSG00000013836)
Suina	DUPLICATION
Suina	DUPLICATION
Suina	ANCESTRAL SPECIES	16	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.f.e.a ##22	ENSGT00940000160844	ENSGT00950000183069.b	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Pig	MODERN SPECIES	10	CD320 (ENSSSCG00000032833)	NDUFA7 (ENSSSCG00000041220)	RPS28 (ENSSSCG00000013597)	KANK3 (ENSSSCG00000013598)	ANGPTL4 (ENSSSCG00000013599)	RAB11B (ENSSSCG00000013600)	MARCHF2 (ENSSSCG00000013601)	HNRNPM (ENSSSCG00000013602)	PRAM1 (ENSSSCG00000060035)	ZNF414 (ENSSSCG00000024810)	MYO1F (ENSSSCG00000013604)	ADAMTS10 (ENSSSCG00000026994)	NFILZ (ENSSSCG00000055667)	ACTL9 (ENSSSCG00000013605)	OR2Z1 (ENSSSCG00000013606)	ENSSSCG00000013607 ##22	ZNF558 (ENSSSCG00000029035)	ENSSSCG00000013609	ENSSSCG00000046648	ENSSSCG00000052520 ##22	ENSSSCG00000013610	ACP5 (ENSSSCG00000032282)	ENSSSCG00000013613	CNN1 (ENSSSCG00000013614)	ECSIT (ENSSSCG00000013615)	ZNF653 (ENSSSCG00000013616)	ELAVL3 (ENSSSCG00000013617)	PRKCSH (ENSSSCG00000013627)	ODAD3 (ENSSSCG00000043957)	RGL3 (ENSSSCG00000013625)	EPOR (ENSSSCG00000013618)
Chacoan peccary	MODERN SPECIES	770	CERS4 (ENSCWAG00000016403)	CD320 (ENSCWAG00000016478)	NDUFA7 (ENSCWAG00000016503)	RPS28 (ENSCWAG00000016528)	KANK3 (ENSCWAG00000016576)	ANGPTL4 (ENSCWAG00000016767)	RAB11B (ENSCWAG00000016886)	MARCHF2 (ENSCWAG00000016943)	HNRNPM (ENSCWAG00000017001)	ZNF414 (ENSCWAG00000017051)	MYO1F (ENSCWAG00000017093)	ADAMTS10 (ENSCWAG00000017445)	ZNF558 (ENSCWAG00000017577)	ENSCWAG00000017601	ACTL9 (ENSCWAG00000017641)	ENSCWAG00000017657 ##22	ENSCWAG00000017698	ACP5 (ENSCWAG00000017740)	ELOF1 (ENSCWAG00000017768)	CNN1 (ENSCWAG00000017810)	ECSIT (ENSCWAG00000017852)	ZNF653 (ENSCWAG00000017907)	ELAVL3 (ENSCWAG00000017973)	PRKCSH (ENSCWAG00000018070)	ODAD3 (ENSCWAG00000018159)	RGL3 (ENSCWAG00000018383)	EPOR (ENSCWAG00000018467)	SWSAP1 (ENSCWAG00000018511)	PLPPR2 (ENSCWAG00000018526)	CCDC159 (ENSCWAG00000018591)	TMEM205 (ENSCWAG00000018687)
Suina	ANCESTRAL SPECIES	16	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00940000154431.f.e.b ##22	ENSGT00950000183005.b.c.b	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428
Chacoan peccary	MODERN SPECIES	770	ENSCWAG00000014568	RETN (ENSCWAG00000014504)	STXBP2 (ENSCWAG00000014429)	PCP2 (ENSCWAG00000014336)	PET100 (ENSCWAG00000014228)	XAB2 (ENSCWAG00000014165)	CAMSAP3 (ENSCWAG00000013824)	PNPLA6 (ENSCWAG00000012227)	MCOLN1 (ENSCWAG00000012124)	ZNF358 (ENSCWAG00000012107)	TEX45 (ENSCWAG00000011996)	PEX11G (ENSCWAG00000011918)	ARHGEF18 (ENSCWAG00000011670)	ENSCWAG00000011535	INSR (ENSCWAG00000011448)	ENSCWAG00000011389 ##22	ENSCWAG00000011348	ENSCWAG00000011207	ADGRE1 (ENSCWAG00000010899)	VAV1 (ENSCWAG00000009741)	SH2D3A (ENSCWAG00000009467)	TRIP10 (ENSCWAG00000009207)	GPR108 (ENSCWAG00000009134)	C3 (ENSCWAG00000008783)	TNFSF14 (ENSCWAG00000008731)	CD70 (ENSCWAG00000008679)	TNFSF9 (ENSCWAG00000008641)	TUBB4A (ENSCWAG00000008574)	DENND1C (ENSCWAG00000008209)	CRB3 (ENSCWAG00000008071)	SLC25A23 (ENSCWAG00000007971)
Suina	ANCESTRAL SPECIES																	ENSGT00940000154431.f.f ##22
Pig	DUPLICATION
Pig	MODERN SPECIES	300	ZNF711 (ENSSSCG00000021601)	POF1B (ENSSSCG00000012462)	CHM (ENSSSCG00000012463)	DACH2 (ENSSSCG00000036515)	ENSSSCG00000040198	ENSSSCG00000041269	ENSSSCG00000036557	KLHL4 (ENSSSCG00000012467)	ENSSSCG00000012469	ENSSSCG00000051391	ENSSSCG00000061974	ENSSSCG00000041020	PABPC5 (ENSSSCG00000040194)	ENSSSCG00000051742	ENSSSCG00000029771	ENSSSCG00000061152 ##22	ENSSSCG00000050751	ENSSSCG00000056840	ENSSSCG00000041744	NAP1L3 (ENSSSCG00000012504)	FAM133A (ENSSSCG00000031033)	ENSSSCG00000036272	ENSSSCG00000012473	ENSSSCG00000054330	DIAPH2 (ENSSSCG00000012474)	ENSSSCG00000050625	ENSSSCG00000061855	ENSSSCG00000042267	ENSSSCG00000058847	ENSSSCG00000052095	ENSSSCG00000037437
Pig	MODERN SPECIES	10	ANGPTL4 (ENSSSCG00000013599)	RAB11B (ENSSSCG00000013600)	MARCHF2 (ENSSSCG00000013601)	HNRNPM (ENSSSCG00000013602)	PRAM1 (ENSSSCG00000060035)	ZNF414 (ENSSSCG00000024810)	MYO1F (ENSSSCG00000013604)	ADAMTS10 (ENSSSCG00000026994)	NFILZ (ENSSSCG00000055667)	ACTL9 (ENSSSCG00000013605)	OR2Z1 (ENSSSCG00000013606)	ENSSSCG00000013607 ##22	ZNF558 (ENSSSCG00000029035)	ENSSSCG00000013609	ENSSSCG00000046648	ENSSSCG00000052520 ##22	ENSSSCG00000013610	ACP5 (ENSSSCG00000032282)	ENSSSCG00000013613	CNN1 (ENSSSCG00000013614)	ECSIT (ENSSSCG00000013615)	ZNF653 (ENSSSCG00000013616)	ELAVL3 (ENSSSCG00000013617)	PRKCSH (ENSSSCG00000013627)	ODAD3 (ENSSSCG00000043957)	RGL3 (ENSSSCG00000013625)	EPOR (ENSSSCG00000013618)	SWSAP1 (ENSSSCG00000037146)	PLPPR2 (ENSSSCG00000045953)	CCDC159 (ENSSSCG00000013620)	TMEM205 (ENSSSCG00000013622)
Euarchontoglires	ANCESTRAL SPECIES	63															ENSGT00940000153305.c.f ##21	ENSGT00940000154431.f ##22
Euarchontoglires_A	ANCESTRAL SPECIES	64															ENSGT00940000153305.c.f ##21	ENSGT00940000154431.f ##22
Tree shrew	MODERN SPECIES	2784													VPS8 (ENSTBEG00000009135)	ENSTBEG00000001995	EHHADH (ENSTBEG00000002738)	ENSTBEG00000003219 ##22	MAP3K13 (ENSTBEG00000003537)	ENSTBEG00000005466	LIPH (ENSTBEG00000005581)	SENP2 (ENSTBEG00000006337)	IGF2BP2 (ENSTBEG00000006776)
Glires	ANCESTRAL SPECIES	65															ENSGT00940000153305.c.f ##21	ENSGT00940000154431.f ##22
Lagomorpha	ANCESTRAL SPECIES	698															ENSGT00940000153305.c.f ##21	ENSGT00940000154431.f ##22
Pika	MODERN SPECIES	1023												ENSOPRG00000011760 #19	ENSOPRG00000011745	ENSOPRG00000011723 #20	CBX3 (ENSOPRG00000011713) ##21	HNRNPA2B1 (ENSOPRG00000011698) ##22	ENSOPRG00000011680 #23
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	14	RBM12B (ENSOCUG00000010353)	CIBAR1 (ENSOCUG00000010331)	ENSOCUG00000039147	TRIQK (ENSOCUG00000034527)	ENSOCUG00000022069	RUNX1T1 (ENSOCUG00000003754)	ENSOCUG00000027627	SLC26A7 (ENSOCUG00000012527)	LRRC69 (ENSOCUG00000028994)	OTUD6B (ENSOCUG00000000218)	ENSOCUG00000000723	ENSOCUG00000030280	ENSOCUG00000023574	NECAB1 (ENSOCUG00000001277)	ENSOCUG00000006890	ENSOCUG00000021479 ##22	ENSOCUG00000006341	ENSOCUG00000006333	NBN (ENSOCUG00000009935)	OSGIN2 (ENSOCUG00000009931)	ENSOCUG00000030509	ENSOCUG00000025532	RIPK2 (ENSOCUG00000001542)	ENSOCUG00000016091	ENSOCUG00000032504	MMP16 (ENSOCUG00000011230)	CNBD1 (ENSOCUG00000029386)	CNGB3 (ENSOCUG00000017962)	CPNE3 (ENSOCUG00000017961)	RMDN1 (ENSOCUG00000001086)	WWP1 (ENSOCUG00000001081)
Rabbit	MODERN SPECIES	4	ATP1A2 (ENSOCUG00000017667)	ATP1A4 (ENSOCUG00000029185)	CASQ1 (ENSOCUG00000009959)	PEA15 (ENSOCUG00000017688)	DCAF8 (ENSOCUG00000017692)	PEX19 (ENSOCUG00000014473)	COPA (ENSOCUG00000014479)	NCSTN (ENSOCUG00000014503)	NHLH1 (ENSOCUG00000022024)	VANGL2 (ENSOCUG00000016671)	ENSOCUG00000038841	ENSOCUG00000026792	CD84 (ENSOCUG00000009311)	ENSOCUG00000032608	SLAMF1 (ENSOCUG00000023151)	ENSOCUG00000022552 ##22	ENSOCUG00000013551	SLAMF7 (ENSOCUG00000013559)	ENSOCUG00000013585	ITLN1 (ENSOCUG00000022033)	ITLN2 (ENSOCUG00000006985)	F11R (ENSOCUG00000006994)	TSTD1 (ENSOCUG00000022892)	USF1 (ENSOCUG00000002352)	ARHGAP30 (ENSOCUG00000002358)	NECTIN4 (ENSOCUG00000002367)	KLHDC9 (ENSOCUG00000002373)	PFDN2 (ENSOCUG00000002378)	NIT1 (ENSOCUG00000002380)	DEDD (ENSOCUG00000002387)	UFC1 (ENSOCUG00000002389)
Rodentia	ANCESTRAL SPECIES	17	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00940000154431.f ##22	ENSGT00950000183069.b.b.a.a	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a	ENSGT00940000160446	ENSGT00940000154063.C.a.b	ENSGT01060000248544.a.a.b.a.a	ENSGT00390000006744	ENSGT00390000006244	ENSGT00940000161972	ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00940000154431.f ##22	ENSGT00950000183005.b.c.b	ENSGT00940000160844.a	ENSGT00950000183005.b.c.a	ENSGT00440000039287	ENSGT00940000163044
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00940000154431.f ##22
Lesser Egyptian jerboa	MODERN SPECIES	133	Nhp2 (ENSJJAG00000016469)	Rmnd5b (ENSJJAG00000017175)	N4bp3 (ENSJJAG00000023037)	Sec24a (ENSJJAG00000021996)	ENSJJAG00000000251	Jade2 (ENSJJAG00000014097)	ENSJJAG00000010594	ENSJJAG00000000547	ENSJJAG00000007493	ENSJJAG00000024213	Tcf7 (ENSJJAG00000000476)	Vdac1 (ENSJJAG00000018371)	ENSJJAG00000021209	ENSJJAG00000005383	Fstl4 (ENSJJAG00000010445)	ENSJJAG00000013880 ##22	Hspa4 (ENSJJAG00000023896)	Aff4 (ENSJJAG00000000912)	Leap2 (ENSJJAG00000000464)	Uqcrq (ENSJJAG00000011956)	Gdf9 (ENSJJAG00000009480)	Shroom1 (ENSJJAG00000019891)	Septin8 (ENSJJAG00000022205)	Kif3a (ENSJJAG00000023717)	ENSJJAG00000012514	Il13 (ENSJJAG00000000582)	ENSJJAG00000019622	ENSJJAG00000008274	Il5 (ENSJJAG00000023833)	ENSJJAG00000018240	ENSJJAG00000019858
Muroidea	ANCESTRAL SPECIES	70	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00940000154431.f ##22
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1274	Retn (ENSNGAG00000005192)	Stxbp2 (ENSNGAG00000007590)	Pcp2 (ENSNGAG00000013181)	Pet100 (ENSNGAG00000013697)	ENSNGAG00000017173	Camsap3 (ENSNGAG00000010370)	Pnpla6 (ENSNGAG00000003086)	Mcoln1 (ENSNGAG00000018276)	Zfp358 (ENSNGAG00000016868)	Tex45 (ENSNGAG00000018173)	Pex11g (ENSNGAG00000020756)	Arhgef18 (ENSNGAG00000001074)	ENSNGAG00000019898	ENSNGAG00000000232	Insr (ENSNGAG00000004448)	ENSNGAG00000017267 ##22	Cd320 (ENSNGAG00000017906)	Ndufa7 (ENSNGAG00000000050)	ENSNGAG00000000148	Kank3 (ENSNGAG00000000666)	Angptl4 (ENSNGAG00000014801)	Rab11b (ENSNGAG00000015757)	Marchf2 (ENSNGAG00000018673)	Hnrnpm (ENSNGAG00000003707)	Pram1 (ENSNGAG00000000156)	Zfp414 (ENSNGAG00000001048)	Myo1f (ENSNGAG00000011575)	Adamts10 (ENSNGAG00000002825)	Actl9 (ENSNGAG00000013965)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1654																ENSNGAG00000000224 ##22	Sim2 (ENSNGAG00000008439)	Hlcs (ENSNGAG00000007223)	Ripply3 (ENSNGAG00000020273)	ENSNGAG00000007298	ENSNGAG00000018659	ENSNGAG00000020230	Vps26c (ENSNGAG00000013886)	Dyrk1a (ENSNGAG00000015173)	ENSNGAG00000013914	Kcnj6 (ENSNGAG00000015071)
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Murinae	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Rat	MODERN SPECIES	13	ENSRNOG00000069383	Atrn (ENSRNOG00000021240)	Gfra4 (ENSRNOG00000021241)	Adam33 (ENSRNOG00000021242)	Siglec1 (ENSRNOG00000021243)	Hspa12b (ENSRNOG00000021244)	RGD1311739 (ENSRNOG00000021245)	Cenpb (ENSRNOG00000057284)	Spef1 (ENSRNOG00000021247)	Cdc25b (ENSRNOG00000021248)	Ap5s1 (ENSRNOG00000021249)	Mavs (ENSRNOG00000025295)	Pank2 (ENSRNOG00000025286)	Rnf24 (ENSRNOG00000021250)	AABR07053749.1 (ENSRNOG00000038259)	LOC108350566 (ENSRNOG00000053070) ##22	Smox (ENSRNOG00000021255)	Adra1d (ENSRNOG00000021256)	Ervv-2 (ENSRNOG00000045581)	Prnp (ENSRNOG00000021259)	ENSRNOG00000070982	Prnd (ENSRNOG00000021260)	Rassf2 (ENSRNOG00000021261)	Slc23a2 (ENSRNOG00000021262)	Pcna (ENSRNOG00000021264)	Cds2 (ENSRNOG00000021265)	Prokr2 (ENSRNOG00000021266)	Gpcpd1 (ENSRNOG00000053201)	Shld1 (ENSRNOG00000021268)	Chgb (ENSRNOG00000021269)	Trmt6 (ENSRNOG00000021270)
Cricetidae	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Cricetinae	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Chinese hamster chok1gshd	MODERN SPECIES	175	ENSCGRG00001016398	ENSCGRG00001000706	Dipk2b (ENSCGRG00001024325)	Kdm6a (ENSCGRG00001023077)	Dusp21 (ENSCGRG00001000819)	ENSCGRG00001016563	ENSCGRG00001011048	Efhc2 (ENSCGRG00001004152)	Ndp (ENSCGRG00001012325)	Maob (ENSCGRG00001012026)	Maoa (ENSCGRG00001003371)	Gpr82 (ENSCGRG00001008634)	Gpr34 (ENSCGRG00001009221)	Cask (ENSCGRG00001018099)	Nyx (ENSCGRG00001023872)	ENSCGRG00001020496 ##22	Ddx3x (ENSCGRG00001022185)	Usp9x (ENSCGRG00001022402)	E330021D16Rik (ENSCGRG00001005473)	Med14 (ENSCGRG00001000873)	1810030O07Rik (ENSCGRG00001022070)	ENSCGRG00001010043	Atp6ap2 (ENSCGRG00001008860)	Bcor (ENSCGRG00001017450)	ENSCGRG00001003048	Mid1ip1 (ENSCGRG00001009863)	Tspan7 (ENSCGRG00001017377)	ENSCGRG00001010548	Otc (ENSCGRG00001001226)	Rpgr (ENSCGRG00001017432)	Sytl5 (ENSCGRG00001023173)
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Prairie vole	MODERN SPECIES	2	Nfe2 (ENSMOCG00000019128) ##23	Copz1 (ENSMOCG00000018095)	ENSMOCG00000011736	Zfp385a (ENSMOCG00000006959)	Itga5 (ENSMOCG00000021919)	ENSMOCG00000010096	Gtsf1 (ENSMOCG00000018889)	Gtsf2 (ENSMOCG00000014770)	ENSMOCG00000011883	ENSMOCG00000014544	Pde1b (ENSMOCG00000008136)	Ppp1r1a (ENSMOCG00000002557)	Glycam1 (ENSMOCG00000020429)	ENSMOCG00000009952	ENSMOCG00000000524	ENSMOCG00000021250 ##22	ENSMOCG00000020011
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	11	Tmem268 (ENSPEMG00000023755)	Tex48 (ENSPEMG00000017861)	Tnfsf8 (ENSPEMG00000025214)	Tnc (ENSPEMG00000012234)	ENSPEMG00000030479	Pappa (ENSPEMG00000002320)	Astn2 (ENSPEMG00000013068)	Trim32 (ENSPEMG00000017435)	ENSPEMG00000012154	Tlr4 (ENSPEMG00000001134)	Brinp1 (ENSPEMG00000009863)	ENSPEMG00000024652	ENSPEMG00000003929	Megf9 (ENSPEMG00000027304)	Tle1 (ENSPEMG00000009903)	ENSPEMG00000026811 ##22	Rasef (ENSPEMG00000002797)	2310002L09Rik (ENSPEMG00000011897)	Frmd3 (ENSPEMG00000018030)	Kdm4c (ENSPEMG00000009673)	ENSPEMG00000014283	Dmac1 (ENSPEMG00000004174)	Ptprd (ENSPEMG00000017837)	Tyrp1 (ENSPEMG00000020081)	ENSPEMG00000026523	Lurap1l (ENSPEMG00000028913)	Mpdz (ENSPEMG00000002221)	Nfib (ENSPEMG00000015036)	Zdhhc21 (ENSPEMG00000011202)	Cer1 (ENSPEMG00000013498)	Frem1 (ENSPEMG00000007771)
Northern American deer mouse	MODERN SPECIES	19	Adh6b (ENSPEMG00000006239)	Adh6a (ENSPEMG00000000326)	Adh7 (ENSPEMG00000003478)	4930579F01Rik (ENSPEMG00000006959)	Trmt10a (ENSPEMG00000011113)	Mttp (ENSPEMG00000013372)	1110002E22Rik (ENSPEMG00000016355)	Dapp1 (ENSPEMG00000018447)	Lamtor3 (ENSPEMG00000028536)	Dnajb14 (ENSPEMG00000000027)	H2az1 (ENSPEMG00000011802)	ENSPEMG00000025829	Ddit4l (ENSPEMG00000029705)	Emcn (ENSPEMG00000020902)	ENSPEMG00000027547	ENSPEMG00000030107 ##22	Ppp3ca (ENSPEMG00000021182)	Bank1 (ENSPEMG00000021709)	Slc39a8 (ENSPEMG00000009754)	Nfkb1 (ENSPEMG00000011360)	Manba (ENSPEMG00000000324)	Ube2d3 (ENSPEMG00000024661)	Cisd2 (ENSPEMG00000012367)	Slc9b1 (ENSPEMG00000015739)	Slc9b2 (ENSPEMG00000018580)	Bdh2 (ENSPEMG00000008358)	Cenpe (ENSPEMG00000003135)	ENSPEMG00000025985	Tacr3 (ENSPEMG00000026875)	Cxxc4 (ENSPEMG00000024400)	Tet2 (ENSPEMG00000003379)
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Eurasian red squirrel	MODERN SPECIES	12	CRYGA (ENSSVLG00005003355)	C2orf80 (ENSSVLG00005003394)	IDH1 (ENSSVLG00005003436)	PIKFYVE (ENSSVLG00005003549)	PTH2R (ENSSVLG00005003700)	ENSSVLG00005003733	ENSSVLG00005003758	ENSSVLG00005003780	ENSSVLG00005003797	MAP2 (ENSSVLG00005003888)	UNC80 (ENSSVLG00005004348)	ENSSVLG00005005077	ENSSVLG00005005150	KANSL1L (ENSSVLG00005005286)	ACADL (ENSSVLG00005005352)	HNRNPA2B1 (ENSSVLG00005005387) ##22	ENSSVLG00005005403	MYL1 (ENSSVLG00005005436)	ENSSVLG00005005520	CPS1 (ENSSVLG00005005630)	ERBB4 (ENSSVLG00005006250)	ENSSVLG00005006704	ENSSVLG00005006732	IKZF2 (ENSSVLG00005006796)	ENSSVLG00005006962	SPAG16 (ENSSVLG00005007010)	VWC2L (ENSSVLG00005007108)	BARD1 (ENSSVLG00005007225)	ABCA12 (ENSSVLG00005007547)	ATIC (ENSSVLG00005008052)	FN1 (ENSSVLG00005008290)
Marmotini	DUPLICATION
Marmotini	DUPLICATION
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES																	ENSGT00940000154431.f.m.a.a ##22
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	33	FANCI (ENSMMMG00000020036)	RLBP1 (ENSMMMG00000020074)	ABHD2 (ENSMMMG00000020084)	MFGE8 (ENSMMMG00000020100)	HAPLN3 (ENSMMMG00000020152)	ENSMMMG00000020167	ENSMMMG00000020175	ISG20 (ENSMMMG00000020185)	AEN (ENSMMMG00000020194)	DET1 (ENSMMMG00000020204)	ENSMMMG00000020215	MRPS11 (ENSMMMG00000020219)	MRPL46 (ENSMMMG00000020227)	ENSMMMG00000020246	NTRK3 (ENSMMMG00000020253)	ENSMMMG00000020299 ##22	AGBL1 (ENSMMMG00000020313)	KLHL25 (ENSMMMG00000020401)	AKAP13 (ENSMMMG00000020418)	SV2B (ENSMMMG00000020704)	SLCO3A1 (ENSMMMG00000020727)	ST8SIA2 (ENSMMMG00000020737)	FAM174B (ENSMMMG00000020743)	CHD2 (ENSMMMG00000020748)	RGMA (ENSMMMG00000020770)	ENSMMMG00000020776	MCTP2 (ENSMMMG00000020783)	NR2F2 (ENSMMMG00000020806)	ENSMMMG00000020815	ARRDC4 (ENSMMMG00000020820)	ENSMMMG00000020824
Alpin marmot	MODERN SPECIES	20													ENSMMMG00000003553	CD109 (ENSMMMG00000003475)	SLC17A5 (ENSMMMG00000003439)	ENSMMMG00000003421 ##22	ENSMMMG00000003132	MTO1 (ENSMMMG00000003047)	CGAS (ENSMMMG00000003022)	ENSMMMG00000002997	ENSMMMG00000002973	ENSMMMG00000002966	ENSMMMG00000002946	ENSMMMG00000002931	DPPA5 (ENSMMMG00000002922)	ENSMMMG00000002902	KCNQ5 (ENSMMMG00000002823)	ENSMMMG00000002799	ENSMMMG00000002781	OGFRL1 (ENSMMMG00000002689)	B3GAT2 (ENSMMMG00000002676)
Marmotini	ANCESTRAL SPECIES	96	ENSGT00390000008126	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d	ENSGT00940000157642	ENSGT01100000263548.b.a.a.a.b.a.d	ENSGT01100000263548.b.a.a.a.b.a.c.b	ENSGT00910000144359	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a	ENSGT00940000166604	ENSGT01050000244815.A.c.b.b	ENSGT00940000163392.a	ENSGT00870000136672	ENSGT00940000156465.f	ENSGT00980000198488.m.a.a.a.a.m.b.a.b	ENSGT00940000154431.f.m.a.b ##22
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	156											ENSMMMG00000022856	ENSMMMG00000022852	ENSMMMG00000022851	ENSMMMG00000022847	ENSMMMG00000022602	ENSMMMG00000022595 ##22	ENSMMMG00000022594	ENSMMMG00000022590	ENSMMMG00000022588	ENSMMMG00000022586	ENSMMMG00000022581	OR12D3 (ENSMMMG00000022579)	ENSMMMG00000022574	ENSMMMG00000022561	ENSMMMG00000022560
Alpin marmot	MODERN SPECIES	340																ENSMMMG00000009573 ##22
Marmotini_b	ANCESTRAL SPECIES	168	ENSGT00390000001153	ENSGT00390000008126	ENSGT00390000016534.A	ENSGT00390000002599	ENSGT00940000153527.d	ENSGT00940000157642	ENSGT01100000263548.b.a.a.a.b.a.d	ENSGT01100000263548.b.a.a.a.b.a.c.b	ENSGT00910000144359	ENSGT01090000260044.A.b.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a	ENSGT00940000166604	ENSGT00870000136672	ENSGT00940000156465.f	ENSGT00980000198488.m.a.a.a.a.m.b.a.b	ENSGT00940000154431.f.m.a.b ##22
Squirrel	MODERN SPECIES	323	ENSSTOG00000025605	MOG (ENSSTOG00000002496)	GABBR1 (ENSSTOG00000002478)	OR2H2 (ENSSTOG00000019745)	ENSSTOG00000034799	ENSSTOG00000026272	UBD (ENSSTOG00000020158)	ENSSTOG00000032360	ENSSTOG00000021100	ENSSTOG00000022909	ENSSTOG00000028497	ENSSTOG00000027804	ENSSTOG00000019731	ENSSTOG00000034270	ENSSTOG00000027981	ENSSTOG00000034171 ##22	ENSSTOG00000026021	ENSSTOG00000028959	ENSSTOG00000034648	ENSSTOG00000021478	ENSSTOG00000026270	ENSSTOG00000016472	ENSSTOG00000030659	ENSSTOG00000024060	ENSSTOG00000032636	ENSSTOG00000032867	ENSSTOG00000006203	ENSSTOG00000027475	ENSSTOG00000022869	ENSSTOG00000025421	ENSSTOG00000000992
Marmotini	ANCESTRAL SPECIES																	ENSGT00940000154431.f.m.b ##22
Alpin marmot	MODERN SPECIES	32						RASEF (ENSMMMG00000018363)	TLE1 (ENSMMMG00000012607)	ENSMMMG00000012571	TLE4 (ENSMMMG00000012524)	PSAT1 (ENSMMMG00000012517)	CEP78 (ENSMMMG00000012498)	GNAQ (ENSMMMG00000012272)	GNA14 (ENSMMMG00000012248)	VPS13A (ENSMMMG00000012153)	ENSMMMG00000012137	ENSMMMG00000012128 ##22	PRUNE2 (ENSMMMG00000012039)	GCNT1 (ENSMMMG00000012027)	RFK (ENSMMMG00000012015)	ENSMMMG00000011961	ENSMMMG00000011953	ENSMMMG00000011944	OSTF1 (ENSMMMG00000011932)	NMRK1 (ENSMMMG00000011918)	ENSMMMG00000011915	ENSMMMG00000011905	TRPM6 (ENSMMMG00000011876)	RORB (ENSMMMG00000011844)	ANXA1 (ENSMMMG00000011831)	ALDH1A1 (ENSMMMG00000011819)	TMC1 (ENSMMMG00000011802)
Marmotini	ANCESTRAL SPECIES																	ENSGT00940000154431.f.n ##22
Marmotini_b	DUPLICATION
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f.n.a.a ##22
Squirrel	MODERN SPECIES	458														CD109 (ENSSTOG00000030419)	ENSSTOG00000026847	ENSSTOG00000029449 ##22	MTO1 (ENSSTOG00000007666)	ENSSTOG00000007687	ENSSTOG00000033587	ENSSTOG00000032538
Arctic ground squirrel	MODERN SPECIES	604																ENSUPAG00010015243 ##22
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f.n.a.b ##22
Arctic ground squirrel	MODERN SPECIES	131									TLE4 (ENSUPAG00010021868)	PSAT1 (ENSUPAG00010021862)	CEP78 (ENSUPAG00010021857)	ENSUPAG00010021855	GNA14 (ENSUPAG00010021852)	VPS13A (ENSUPAG00010021846)	FOXB2 (ENSUPAG00010021845)	ENSUPAG00010021844 ##22	PRUNE2 (ENSUPAG00010021836)	GCNT1 (ENSUPAG00010021834)	ENSUPAG00010021831	RFK (ENSUPAG00010021827)	ENSUPAG00010021821
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f.n.b ##22
Arctic ground squirrel	MODERN SPECIES	47	MDH1 (ENSUPAG00010011052)	UGP2 (ENSUPAG00010011000)	VPS54 (ENSUPAG00010010962)	PELI1 (ENSUPAG00010010945)	LGALSL (ENSUPAG00010010929)	AFTPH (ENSUPAG00010010843)	SERTAD2 (ENSUPAG00010010839)	ENSUPAG00010010837	SLC1A4 (ENSUPAG00010010829)	CEP68 (ENSUPAG00010010822)	RAB1A (ENSUPAG00010010773)	ACTR2 (ENSUPAG00010010750)	ENSUPAG00010010742	SPRED2 (ENSUPAG00010010724)	ENSUPAG00010010722	ENSUPAG00010010713 ##22	MEIS1 (ENSUPAG00010010695)	ENSUPAG00010010694	ETAA1 (ENSUPAG00010010688)	ENSUPAG00010010674	DNAAF10 (ENSUPAG00010010668)	PNO1 (ENSUPAG00010010658)	PPP3R1 (ENSUPAG00010010653)	CNRIP1 (ENSUPAG00010010645)	PLEK (ENSUPAG00010010638)	FBXO48 (ENSUPAG00010010632)	APLF (ENSUPAG00010010617)	ENSUPAG00010010610	ARHGAP25 (ENSUPAG00010010596)	BMP10 (ENSUPAG00010010590)	ENSUPAG00010010583
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	122	BMS1 (ENSODEG00000005554)	ZNF248 (ENSODEG00000004951)	ZNF25 (ENSODEG00000005495)	ENSODEG00000004814	ENSODEG00000019232	ENSODEG00000004827	ENSODEG00000005165	ENSODEG00000004808	ENSODEG00000005414	NPSR1 (ENSODEG00000005018)	ENSODEG00000019229	ENSODEG00000005152	ENSODEG00000005283	GPR15 (ENSODEG00000019236)	CPOX (ENSODEG00000004750)	ENSODEG00000005746 ##22	ENSODEG00000019164	ENSODEG00000019181	ENSODEG00000005393	DCBLD2 (ENSODEG00000005751)	ENSODEG00000006867	COL8A1 (ENSODEG00000004998)	ENSODEG00000005226	FILIP1L (ENSODEG00000006295)	ENSODEG00000006664	TBC1D23 (ENSODEG00000005180)	ENSODEG00000005041	TOMM70 (ENSODEG00000005476)	ENSODEG00000007594	LNP1 (ENSODEG00000005232)	ENSODEG00000005682
Degu	MODERN SPECIES	222								ENSODEG00000019829	IDS (ENSODEG00000008960)	AFF2 (ENSODEG00000009737)	ENSODEG00000009513	FMR1 (ENSODEG00000008377)	ENSODEG00000008653	ENSODEG00000008514	ENSODEG00000010050	ENSODEG00000009329 ##22	ENSODEG00000009047
Degu	MODERN SPECIES	81	ARSI (ENSODEG00000005121)	ENSODEG00000005372	CD74 (ENSODEG00000006374)	ENSODEG00000005622	NDST1 (ENSODEG00000006023)	SYNPO (ENSODEG00000005711)	MYOZ3 (ENSODEG00000006247)	RBM22 (ENSODEG00000005016)	DCTN4 (ENSODEG00000005357)	SMIM3 (ENSODEG00000019316)	ENSODEG00000019235	ENSODEG00000005334	CHSY3 (ENSODEG00000005741)	MINAR2 (ENSODEG00000006338)	ADAMTS19 (ENSODEG00000006447)	ENSODEG00000005464 ##22	ISOC1 (ENSODEG00000007132)	SLC27A6 (ENSODEG00000007619)	FBN2 (ENSODEG00000007349)	SLC12A2 (ENSODEG00000007287)	ENSODEG00000008666	ENSODEG00000005778	ENSODEG00000006652	PRRC1 (ENSODEG00000006350)	MEGF10 (ENSODEG00000005872)	C5orf63 (ENSODEG00000007167)	MARCHF3 (ENSODEG00000006696)	LMNB1 (ENSODEG00000006242)	TEX43 (ENSODEG00000006869)	PHAX (ENSODEG00000006349)	ENSODEG00000009578
Primates	ANCESTRAL SPECIES	63															ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.f ##22
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Hominidae	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00940000154431.f ##22
Human	MODERN SPECIES	19	HOXA13 (ENSG00000106031) #8	HOXA11 (ENSG00000005073) #9	HOXA10 (ENSG00000253293) #10	ENSG00000257184	HOXA9 (ENSG00000078399) #11	HOXA7 (ENSG00000122592) #12	HOXA6 (ENSG00000106006) #13	HOXA5 (ENSG00000106004) #14	HOXA4 (ENSG00000197576) #15	HOXA3 (ENSG00000105997) #16	HOXA2 (ENSG00000105996) #17	HOXA1 (ENSG00000105991) #18	SKAP2 (ENSG00000005020) #19	SNX10 (ENSG00000086300) #20	CBX3 (ENSG00000122565) #21	HNRNPA2B1 (ENSG00000122566) ##22	NFE2L3 (ENSG00000050344) #23	NPVF (ENSG00000105954) #24	C7orf31 (ENSG00000153790) #25	CYCS (ENSG00000172115) ##26	OSBPL3 (ENSG00000070882) #27	GSDME (ENSG00000105928) #28	PALS2 (ENSG00000105926) #29	NPY (ENSG00000122585) #30	STK31 (ENSG00000196335) #31	FAM221A (ENSG00000188732) #32	CCDC126 (ENSG00000169193) #33	TRA2A (ENSG00000164548) #34	IGF2BP3 (ENSG00000136231) #35	MALSU1 (ENSG00000156928) #36	GPNMB (ENSG00000136235) #37
Strepsirrhini	ANCESTRAL SPECIES	83														ENSGT00940000156007.d #20	ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.f ##22
Lemuriformes	ANCESTRAL SPECIES	156															ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.f ##22
Mouse lemur	MODERN SPECIES	1	SLC24A2 (ENSMICG00000034280)	ENSMICG00000028503	ENSMICG00000036265	MLLT3 (ENSMICG00000035047)	FOCAD (ENSMICG00000009888)	ENSMICG00000014403	KLHL9 (ENSMICG00000002688)	MTAP (ENSMICG00000015072)	CDKN2A (ENSMICG00000005835)	CDKN2B (ENSMICG00000031833)	DMRTA1 (ENSMICG00000046386)	ELAVL2 (ENSMICG00000001558)	IZUMO3 (ENSMICG00000011839)	ENSMICG00000045076	PCSK5 (ENSMICG00000014046)	ENSMICG00000002750 ##22	OSTF1 (ENSMICG00000007556)	NMRK1 (ENSMICG00000007552)	CARNMT1 (ENSMICG00000007542)	C9orf40 (ENSMICG00000028036)	TRPM6 (ENSMICG00000007514)	RORB (ENSMICG00000007512)	ANXA1 (ENSMICG00000013045)	ENSMICG00000027399	ENSMICG00000045378	ENSMICG00000007394	ENSMICG00000030684	CYP1D1 (ENSMICG00000033439)	ENSMICG00000034837	ENSMICG00000015778	ZFAND5 (ENSMICG00000047602)
Lemuriformes_a	ANCESTRAL SPECIES	365															ENSGT00940000153305.c.e.a ##21	ENSGT00940000154431.f ##22
Coquerels sifaka	MODERN SPECIES	205	HOXA13 (ENSPCOG00000019940) #8	HOXA11 (ENSPCOG00000019148) #9	HOXA10 (ENSPCOG00000015186) #10	HOXA9 (ENSPCOG00000019455) #11	HOXA7 (ENSPCOG00000018610) #12	HOXA6 (ENSPCOG00000019088) #13	HOXA5 (ENSPCOG00000020367) #14	HOXA4 (ENSPCOG00000008248) #15	HOXA3 (ENSPCOG00000025444) #16	HOXA2 (ENSPCOG00000008813) #17	HOXA1 (ENSPCOG00000025369) #18	ENSPCOG00000023631	SKAP2 (ENSPCOG00000000688) #19	SNX10 (ENSPCOG00000023211) #20	ENSPCOG00000006764 ##21	HNRNPA2B1 (ENSPCOG00000026324) ##22	ENSPCOG00000024982 #23	NPVF (ENSPCOG00000023274) #24	C7orf31 (ENSPCOG00000018021) #25	ENSPCOG00000026330 ##26	OSBPL3 (ENSPCOG00000028107) #27	GSDME (ENSPCOG00000018584) #28	PALS2 (ENSPCOG00000028606) #29	NPY (ENSPCOG00000016739) #30	ENSPCOG00000026803	STK31 (ENSPCOG00000014445) #31	ENSPCOG00000022640 #32	CCDC126 (ENSPCOG00000014771) #33	ENSPCOG00000016971	TRA2A (ENSPCOG00000020465) #34	ENSPCOG00000016922 #35
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000155029.c.a	ENSGT00940000162533 #17	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c #21	ENSGT00940000154431.f ##22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405 #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500 #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167 #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Opossum	MODERN SPECIES	7	EVX1 (ENSMODG00000000447) #7	HOXA13 (ENSMODG00000000449) #8	HOXA11 (ENSMODG00000000453) #9	HOXA10 (ENSMODG00000000463) #10	ENSMODG00000051224	HOXA7 (ENSMODG00000038697) #12	HOXA6 (ENSMODG00000000472) #13	HOXA5 (ENSMODG00000000483) #14	ENSMODG00000049221 #15	HOXA3 (ENSMODG00000000494) #16	HOXA2 (ENSMODG00000000502) #17	HOXA1 (ENSMODG00000000507) #18	SKAP2 (ENSMODG00000000521) #19	SNX10 (ENSMODG00000040432) #20	ENSMODG00000000572 ##21	HNRNPA2B1 (ENSMODG00000000603) ##22	ENSMODG00000045075 #23	ENSMODG00000023944	ENSMODG00000000610 #24	ENSMODG00000000640 #25	CYCS (ENSMODG00000013402) #26	OSBPL3 (ENSMODG00000000723) #27	GSDME (ENSMODG00000000728) #28	ENSMODG00000000740 #29	NPY (ENSMODG00000000745) #30	STK31 (ENSMODG00000000777) #31	ENSMODG00000028155	CCDC126 (ENSMODG00000000787) #32	ENSMODG00000000807 #34	ENSMODG00000048020	IGF2BP3 (ENSMODG00000001014) #35
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000155029.c.a	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c #21	ENSGT00940000154431.f ##22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405 #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500.d #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167.v #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Tasmanian devil	MODERN SPECIES	4	JAZF1 (ENSSHAG00000025117)	TAX1BP1 (ENSSHAG00000015121)	HIBADH (ENSSHAG00000015501)	EVX1 (ENSSHAG00000016439) #7	HOXA13 (ENSSHAG00000016581) #8	HOXA11 (ENSSHAG00000016623) #9	HOXA10 (ENSSHAG00000021817) #10	ENSSHAG00000026258	HOXA3 (ENSSHAG00000016786) #16	HOXA4 (ENSSHAG00000029999) #15	HOXA2 (ENSSHAG00000016805) #17	HOXA1 (ENSSHAG00000016818) #18	SKAP2 (ENSSHAG00000022128) #19	SNX10 (ENSSHAG00000028084) #20	CBX3 (ENSSHAG00000017913) #21	HNRNPA2B1 (ENSSHAG00000028707) ##22	ENSSHAG00000017945 #23	ENSSHAG00000024177	ENSSHAG00000018628 #24	ENSSHAG00000024521 #25	ENSSHAG00000027562	ENSSHAG00000022103	OSBPL3 (ENSSHAG00000002636) #27	GSDME (ENSSHAG00000029746) #28	PALS2 (ENSSHAG00000006179) #29	NPY (ENSSHAG00000009192) #30	STK31 (ENSSHAG00000000643) #31	ENSSHAG00000003842 #32	CCDC126 (ENSSHAG00000030738) #33	TRA2A (ENSSHAG00000005727) #34	IGF2BP3 (ENSSHAG00000007163) #35
Diprotodontia	ANCESTRAL SPECIES	18	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585 #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000155029.c.a	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c #21	ENSGT00940000154431.f ##22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405 #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500.d #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167.v #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Diprotodontia_a	ANCESTRAL SPECIES	20	ENSGT00940000159854 #7	ENSGT00940000162322 #8	ENSGT00940000158311 #9	ENSGT00940000163268	ENSGT00940000161864 #11	ENSGT00940000161013 #12	ENSGT00940000161585.a #13	ENSGT00940000159894 #14	ENSGT00940000158988.a.a #15	ENSGT00940000159522 #16	ENSGT00940000155029.c.a	ENSGT00940000157315 #18	ENSGT00390000017856.a #19	ENSGT00940000156007 #20	ENSGT00940000153305.c #21	ENSGT00940000154431.f ##22	ENSGT00950000182892.a.b.b #23	ENSGT00390000003271 #24	ENSGT00390000015236 #25	ENSGT00390000009405.e.b #26	ENSGT00940000155957 #27	ENSGT00940000155880 #28	ENSGT00940000158500.d #29	ENSGT00940000156475 #30	ENSGT00390000007287 #31	ENSGT00770000120611.B #32	ENSGT00940000153470.a.a.a.b #33	ENSGT01030000235027	ENSGT00940000157167.v #34	ENSGT00940000154957.B #35	ENSGT00390000015035 #36
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1036	ENSVURG00010000187 #7	ENSVURG00010000199 #8	ENSVURG00010000215 #9	ENSVURG00010000225	ENSVURG00010000241 #11	ENSVURG00010000250 #12	ENSVURG00010000256 #13	ENSVURG00010000263 #14	ENSVURG00010000272 #15	ENSVURG00010000285 #16	ENSVURG00010000296	ENSVURG00010000303 #18	ENSVURG00010000328 #19	ENSVURG00010000381 #20	ENSVURG00010000437 #21	ENSVURG00010000471 ##22	ENSVURG00010000522 #23	ENSVURG00010000563 #24	ENSVURG00010000574 #25	ENSVURG00010000608	ENSVURG00010000673 #27	ENSVURG00010000775 #28	ENSVURG00010000860 #29	ENSVURG00010000925 #30	ENSVURG00010001026 #31	ENSVURG00010001662 #32	ENSVURG00010001674 #33	ENSVURG00010001682 #34	ENSVURG00010001736 #35	ENSVURG00010001806 #36	ENSVURG00010001822 #37
Common wonbat	MODERN SPECIES	1036	ENSVURG00010019653 #7	ENSVURG00010019656 #8	ENSVURG00010019662 #9	HOXA10 (ENSVURG00010019671) #10	ENSVURG00010019686 #11	ENSVURG00010019687 #12	ENSVURG00010019692 #13	ENSVURG00010019698 #14	ENSVURG00010019706 #15	ENSVURG00010019713 #16	ENSVURG00010019721	ENSVURG00010019727 #18	ENSVURG00010019737 #19	ENSVURG00010019757 #20	ENSVURG00010019765 #21	ENSVURG00010019785 ##22	ENSVURG00010019805 #23	ENSVURG00010019822 #24	ENSVURG00010019827 #25	ENSVURG00010019836	ENSVURG00010019854 #27	ENSVURG00010019898 #28	ENSVURG00010019917 #29	ENSVURG00010019940 #30	ENSVURG00010019972 #31	ENSVURG00010020074 #32	ENSVURG00010020080 #33	ENSVURG00010020085 #34	ENSVURG00010020101 #35	ENSVURG00010020118 #36	ENSVURG00010020126 #37
koala	MODERN SPECIES	50	HOXA13 (ENSPCIG00000013657) #8	HOXA11 (ENSPCIG00000013678) #9	ENSPCIG00000033721	HOXA9 (ENSPCIG00000013689) #11	HOXA7 (ENSPCIG00000013692) #12	HOXA6 (ENSPCIG00000037246) #13	HOXA5 (ENSPCIG00000013698) #14	ENSPCIG00000013701 #15	HOXA3 (ENSPCIG00000013705) #16	ENSPCIG00000013706	HOXA1 (ENSPCIG00000013712) #18	ENSPCIG00000032652	SKAP2 (ENSPCIG00000013715) #19	SNX10 (ENSPCIG00000013721) #20	ENSPCIG00000013724 #21	HNRNPA2B1 (ENSPCIG00000013729) ##22	ENSPCIG00000022663 #24	ENSPCIG00000003201 #25	ENSPCIG00000003196 #26	OSBPL3 (ENSPCIG00000003096) #27	GSDME (ENSPCIG00000023065) #28	ENSPCIG00000023068 #29	ENSPCIG00000023077 #30	STK31 (ENSPCIG00000007874) #31	FAM221A (ENSPCIG00000007910) #32	CCDC126 (ENSPCIG00000007913) #33	TRA2A (ENSPCIG00000007917) #34	ENSPCIG00000007924	IGF2BP3 (ENSPCIG00000007929) #35	MALSU1 (ENSPCIG00000007943) #36	GPNMB (ENSPCIG00000007948) #37
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	12640																ENSMEUG00000014479 ##22
Wallaby	MODERN SPECIES	4503																HNRNPA2B1 (ENSMEUG00000001084) ##22	ENSMEUG00000001067 #23
Platypus	MODERN SPECIES	19	ENSOANG00000009174 #7	HOXA13 (ENSOANG00000040975) #8	HOXA11 (ENSOANG00000045981) #9	HOXA10 (ENSOANG00000045760) #10	ENSOANG00000046469	HOXA7 (ENSOANG00000046422) #12	HOXA6 (ENSOANG00000009168) #13	HOXA5 (ENSOANG00000009167) #14	ENSOANG00000048692 #15	HOXA3 (ENSOANG00000009165) #16	ENSOANG00000009164	HOXA1 (ENSOANG00000050092) #18	SKAP2 (ENSOANG00000009162) #19	SNX10 (ENSOANG00000040490) #20	CBX3 (ENSOANG00000009160) #21	HNRNPA2B1 (ENSOANG00000009159) #22	ENSOANG00000009158 #23	ENSOANG00000031573 #24	ENSOANG00000036736	OSBPL3 (ENSOANG00000008434) #27	GSDME (ENSOANG00000008431) #28	PALS2 (ENSOANG00000008427) #29	NPY (ENSOANG00000013383) #30	STK31 (ENSOANG00000014200) #31	FAM221A (ENSOANG00000050001) #32	CCDC126 (ENSOANG00000014201) #33	TRA2A (ENSOANG00000014202) #34	IGF2BP3 (ENSOANG00000014203) #35	MALSU1 (ENSOANG00000037543) #36	GPNMB (ENSOANG00000014205) #37	NUP42 (ENSOANG00000014206)