Boreoeutheria ANCESTRAL SPECIES 13 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Euarchontoglires ANCESTRAL SPECIES 13 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Primates ANCESTRAL SPECIES 12 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Haplorrhini ANCESTRAL SPECIES 8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B ENSGT00390000015035 Simiiformes ANCESTRAL SPECIES 12 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00910000146860.b ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Catarrhini ANCESTRAL SPECIES 6 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00910000146860.b.b ENSGT00940000153470.a.a.a.b ENSGT00940000154947.f.b ENSGT00390000015089.d ENSGT00910000147494 Cercopithecidae ANCESTRAL SPECIES 11 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a.d.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00910000146860.b.b ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Cercopithecinae ANCESTRAL SPECIES 8 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a.d.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00910000146860.b.b ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Cercopithecinae_a ANCESTRAL SPECIES 8 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00940000153395.a.rb.b.b.a #18 ENSGT00940000167156 ENSGT01030000234542.b.a.a.a.b.a.b.c.a ENSGT00940000153299.c.b.a.b.a.a.a ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00940000153593.c.b.d.b ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a.d.b.b.a.a.a ##26 ENSGT00390000009405.b.c.a.a.d.b.b.a.a.b.a ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00910000146860.b.b ENSGT00940000153470.a.a.a.b ENSGT00940000154947.f.b Cercopithecinae_b ANCESTRAL SPECIES 11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00940000153395.a.rb.b.b.a #18 ENSGT00940000167156 ENSGT01030000234542.b.a.a.a.b.a.b.c.a ENSGT00940000153299.c.b.a.b.a.a.a ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00940000153593.c.b.d.b ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00910000146860.b.b ENSGT00940000153470.a.a.a.b ENSGT00940000154947.f.b ENSGT00390000015089.d ENSGT00940000157167 Olive baboon MODERN SPECIES 14 HOXA13 (ENSPANG00000030952) #7 HOXA11 (ENSPANG00000026298) #8 HOXA10 (ENSPANG00000021024) #9 HOXA9 (ENSPANG00000025913) #10 HOXA7 (ENSPANG00000029246) #11 HOXA6 (ENSPANG00000013799) #12 HOXA5 (ENSPANG00000009594) #13 HOXA4 (ENSPANG00000045376) #14 HOXA3 (ENSPANG00000025912) #15 HOXA2 (ENSPANG00000015067) #16 HOXA1 (ENSPANG00000003403) #17 MAD2L1 (ENSPANG00000004063) #18 SKAP2 (ENSPANG00000006185) #19 SNX10 (ENSPANG00000006089) #20 ENSPANG00000031037 #21 HNRNPA2B1 (ENSPANG00000021598) #22 NFE2L3 (ENSPANG00000013687) #23 NPVF (ENSPANG00000008672) #24 C7orf31 (ENSPANG00000045080) #25 ENSPANG00000050044 #26 ENSPANG00000041877 #27 ENSPANG00000047289 #28 ENSPANG00000045545 #29 OSBPL3 (ENSPANG00000019047) #30 GSDME (ENSPANG00000008671) #31 PALS2 (ENSPANG00000014542) #32 ENSPANG00000037890 #33 NPY (ENSPANG00000049695) #34 ENSPANG00000041561 #35 ENSPANG00000042645 #36 STK31 (ENSPANG00000024764) #37 Cercopithecinae_d ANCESTRAL SPECIES 10 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00940000153395.a.rb.b.b.a #18 ENSGT00940000167156 ENSGT01030000234542.b.a.a.a.b.a.b.c.a ENSGT00940000153299.c.b.a.b.a.a.a ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00940000153593.c.b.d.b ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00910000146860.b.b ENSGT00940000153470.a.a.a.b ENSGT00940000154947.f.b ENSGT00390000015089.d ENSGT00940000157167 Sooty mangabey MODERN SPECIES 98 HOXA6 (ENSCATG00000035243) #12 HOXA5 (ENSCATG00000043876) #13 HOXA7 (ENSCATG00000032186) #11 HOXA4 (ENSCATG00000029977) #14 HOXA3 (ENSCATG00000035121) #15 HOXA2 (ENSCATG00000033672) #16 HOXA1 (ENSCATG00000034436) #17 ENSCATG00000036904 #18 ENSCATG00000033949 ENSCATG00000012253 SKAP2 (ENSCATG00000015604) #19 ENSCATG00000044879 ENSCATG00000044832 SNX10 (ENSCATG00000044201) #20 ENSCATG00000007882 #21 HNRNPA2B1 (ENSCATG00000033325) #22 NFE2L3 (ENSCATG00000040425) #23 ENSCATG00000022058 NPVF (ENSCATG00000042042) #24 C7orf31 (ENSCATG00000010408) #25 OSBPL3 (ENSCATG00000043751) #30 GSDME (ENSCATG00000037274) #31 PALS2 (ENSCATG00000036634) #32 NPY (ENSCATG00000041237) #34 STK31 (ENSCATG00000021541) #37 FAM221A (ENSCATG00000044412) ENSCATG00000040316 CCDC126 (ENSCATG00000033060) ENSCATG00000040046 ENSCATG00000043573 TRA2A (ENSCATG00000041219) Drill MODERN SPECIES 322 HOXA9 (ENSMLEG00000044371) #10 HOXA7 (ENSMLEG00000043725) #11 HOXA6 (ENSMLEG00000043981) #12 HOXA5 (ENSMLEG00000032881) #13 HOXA3 (ENSMLEG00000039968) #15 ENSMLEG00000033218 #14 HOXA2 (ENSMLEG00000028127) #16 HOXA1 (ENSMLEG00000035357) #17 ENSMLEG00000029093 ENSMLEG00000044382 SKAP2 (ENSMLEG00000044388) #19 ENSMLEG00000041406 ENSMLEG00000044195 SNX10 (ENSMLEG00000017869) #20 CBX3 (ENSMLEG00000043394) #21 HNRNPA2B1 (ENSMLEG00000040848) #22 NFE2L3 (ENSMLEG00000030644) #23 Macaca ANCESTRAL SPECIES 3 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00940000153395.a.rb.b.b.a #18 ENSGT00940000167156 ENSGT01030000234542.b.a.a.a.b.a.b.c.a ENSGT00940000153299.c.b.a.b.a.a.a ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00940000153593.c.b.d.b ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a.d.b.b.a.a.a ##26 ENSGT00390000009405.b.c.a.a.d.b.b.a.a.b.a ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000154947.f.b ENSGT00390000015089.d Macaca_a ANCESTRAL SPECIES 7 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00940000153395.a.rb.b.b.a #18 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a.d.b.b.a.a.a ##26 ENSGT00980000199842.C.a.b ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000153095.g.b.a.b.n.a ENSGT00940000154957.B Crab-eating macaque MODERN SPECIES 13 HOXA13 (ENSMFAG00000039716) #7 HOXA11 (ENSMFAG00000044467) #8 HOXA10 (ENSMFAG00000000953) HOXA9 (ENSMFAG00000041407) #10 HOXA7 (ENSMFAG00000058004) #11 HOXA6 (ENSMFAG00000030075) #12 HOXA5 (ENSMFAG00000061184) #13 HOXA4 (ENSMFAG00000038265) #14 HOXA3 (ENSMFAG00000053957) #15 HOXA2 (ENSMFAG00000040635) #16 HOXA1 (ENSMFAG00000034381) #17 ENSMFAG00000025170 #18 SKAP2 (ENSMFAG00000041066) #19 SNX10 (ENSMFAG00000000672) #20 CBX3 (ENSMFAG00000000399) #21 HNRNPA2B1 (ENSMFAG00000002536) #22 NFE2L3 (ENSMFAG00000031568) #23 NPVF (ENSMFAG00000033164) #24 C7orf31 (ENSMFAG00000043369) #25 ENSMFAG00000050012 ##26 ENSMFAG00000047292 OSBPL3 (ENSMFAG00000045859) #30 GSDME (ENSMFAG00000045660) #31 PALS2 (ENSMFAG00000024129) #32 NPY (ENSMFAG00000043708) #34 STK31 (ENSMFAG00000002623) #37 ENSMFAG00000056826 ENSMFAG00000048363 #36 CCDC126 (ENSMFAG00000032312) ENSMFAG00000058711 TRA2A (ENSMFAG00000043211) Pig-tailed macaque MODERN SPECIES 534 HOXA7 (ENSMNEG00000013840) #11 HOXA6 (ENSMNEG00000013443) #12 HOXA5 (ENSMNEG00000041820) #13 HOXA4 (ENSMNEG00000038108) #14 HOXA3 (ENSMNEG00000045278) #15 HOXA2 (ENSMNEG00000028148) #16 HOXA1 (ENSMNEG00000043463) #17 ENSMNEG00000027963 ENSMNEG00000040022 ENSMNEG00000045177 SKAP2 (ENSMNEG00000029161) #19 ENSMNEG00000001360 ENSMNEG00000027968 SNX10 (ENSMNEG00000032503) #20 ENSMNEG00000039531 ##21 HNRNPA2B1 (ENSMNEG00000029148) #22 NFE2L3 (ENSMNEG00000040959) #23 ENSMNEG00000011490 NPVF (ENSMNEG00000044212) #24 C7orf31 (ENSMNEG00000040993) #25 ENSMNEG00000040882 ##26 OSBPL3 (ENSMNEG00000037365) #30 GSDME (ENSMNEG00000038751) #31 PALS2 (ENSMNEG00000017368) #32 NPY (ENSMNEG00000037164) #34 STK31 (ENSMNEG00000030763) #37 FAM221A (ENSMNEG00000040337) CCDC126 (ENSMNEG00000041538) ENSMNEG00000043436 ENSMNEG00000035994 TRA2A (ENSMNEG00000040670) Vervet Monkey MODERN SPECIES 13 HOXA13 (ENSCSAG00000014315) #7 HOXA11 (ENSCSAG00000014310) #8 ENSCSAG00000014302 #9 HOXA9 (ENSCSAG00000014297) #10 HOXA7 (ENSCSAG00000014292) #11 HOXA6 (ENSCSAG00000014287) #12 HOXA5 (ENSCSAG00000014278) #13 HOXA4 (ENSCSAG00000014273) #14 HOXA3 (ENSCSAG00000014267) #15 HOXA2 (ENSCSAG00000014262) #16 HOXA1 (ENSCSAG00000014256) #17 SKAP2 (ENSCSAG00000014230) #19 ENSCSAG00000014193 SNX10 (ENSCSAG00000014190) #20 CBX3 (ENSCSAG00000014185) #21 ENSCSAG00000014175 #22 NFE2L3 (ENSCSAG00000014168) #23 NPVF (ENSCSAG00000014160) #24 C7orf31 (ENSCSAG00000014149) #25 OSBPL3 (ENSCSAG00000014122) #30 GSDME (ENSCSAG00000014114) #31 PALS2 (ENSCSAG00000014108) #32 NPY (ENSCSAG00000014088) #34 STK31 (ENSCSAG00000014075) #37 FAM221A (ENSCSAG00000014066) CCDC126 (ENSCSAG00000014057) TRA2A (ENSCSAG00000014051) IGF2BP3 (ENSCSAG00000014023) MALSU1 (ENSCSAG00000013969) GPNMB (ENSCSAG00000013965) NUP42 (ENSCSAG00000013956) Rhinopithecus ANCESTRAL SPECIES 122 ENSGT00940000159856 ENSGT00390000006009.a.a.a ENSGT00390000006555 ENSGT00940000158604 ENSGT00940000160741 ENSGT00390000004832.c.b ENSGT00940000156193 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000001360 ENSGT00940000155420.b ENSGT00390000014787 ENSGT00390000009030 ENSGT00390000006762 ENSGT00940000155932 ENSGT00940000155585 ENSGT00390000000378.d.a ENSGT00940000156009.A ENSGT00510000047471 ENSGT00940000160488 ENSGT00940000161343 ENSGT00950000183203.d.g ENSGT00390000018559.t Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 3092 SKAP2 (ENSRROG00000039303) #19 ENSRROG00000034782 ENSRROG00000038765 SNX10 (ENSRROG00000034286) #20 CBX3 (ENSRROG00000035467) #21 ENSRROG00000020443 #22 NFE2L3 (ENSRROG00000031247) #23 Golden snub-nosed monkey MODERN SPECIES 2234 ANKFN1 (ENSRROG00000036166) NOG (ENSRROG00000017173) C17orf67 (ENSRROG00000040355) DGKE (ENSRROG00000035418) TRIM25 (ENSRROG00000036932) COIL (ENSRROG00000014024) SCPEP1 (ENSRROG00000022333) ENSRROG00000008368 #22 AKAP1 (ENSRROG00000010936) ENSRROG00000034421 Black snub-nosed monkey DUPLICATION Black snub-nosed monkey MODERN SPECIES 1813 ENSRBIG00000024934 ENSRBIG00000028714 #19 ENSRBIG00000038300 ENSRBIG00000041502 ENSRBIG00000030128 #20 ENSRBIG00000029041 ##21 ENSRBIG00000015923 #22 NFE2L3 (ENSRBIG00000044283) #23 Black snub-nosed monkey MODERN SPECIES 442 ANKFN1 (ENSRBIG00000038242) C17orf67 (ENSRBIG00000034669) DGKE (ENSRBIG00000040729) TRIM25 (ENSRBIG00000042817) COIL (ENSRBIG00000034489) SCPEP1 (ENSRBIG00000000764) ENSRBIG00000039719 #22 AKAP1 (ENSRBIG00000033113) Hominoidea ANCESTRAL SPECIES 6 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b.c #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000154947.f.b ENSGT00390000015089.d ENSGT00910000147494 ENSGT00940000157167 Gibbon MODERN SPECIES 7 HOXA11 (ENSNLEG00000014994) #8 ENSNLEG00000018316 #9 HOXA9 (ENSNLEG00000014992) #10 ENSNLEG00000032135 #11 HOXA6 (ENSNLEG00000014990) #12 HOXA4 (ENSNLEG00000014988) #14 HOXA3 (ENSNLEG00000014980) #15 HOXA2 (ENSNLEG00000014978) #16 HOXA1 (ENSNLEG00000014975) #17 ENSNLEG00000035199 SKAP2 (ENSNLEG00000014950) #19 ENSNLEG00000035004 ENSNLEG00000031144 SNX10 (ENSNLEG00000014938) #20 ENSNLEG00000014931 #21 HNRNPA2B1 (ENSNLEG00000014918) #22 NFE2L3 (ENSNLEG00000027718) #23 NPVF (ENSNLEG00000014908) #24 CYCS (ENSNLEG00000014901) #26 OSBPL3 (ENSNLEG00000014856) #30 GSDME (ENSNLEG00000014837) #31 PALS2 (ENSNLEG00000014829) #32 NPY (ENSNLEG00000014826) #34 STK31 (ENSNLEG00000014801) #37 FAM221A (ENSNLEG00000014799) CCDC126 (ENSNLEG00000014797) ENSNLEG00000031039 TRA2A (ENSNLEG00000014794) IGF2BP3 (ENSNLEG00000014780) MALSU1 (ENSNLEG00000033575) GPNMB (ENSNLEG00000014758) Hominidae ANCESTRAL SPECIES 11 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b.c #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000154947.f.b ENSGT00390000015089.d ENSGT00910000147494 ENSGT00940000157167 Orangutan MODERN SPECIES 20 HOXA11 (ENSPPYG00000017698) #8 ENSPPYG00000039324 #9 HOXA9 (ENSPPYG00000032755) #10 HOXA7 (ENSPPYG00000017701) #11 HOXA6 (ENSPPYG00000017702) #12 HOXA5 (ENSPPYG00000017703) #13 HOXA4 (ENSPPYG00000017704) #14 ENSPPYG00000017705 HOXA3 (ENSPPYG00000017706) #15 HOXA2 (ENSPPYG00000017707) #16 HOXA1 (ENSPPYG00000029903) #17 SKAP2 (ENSPPYG00000017710) #19 ENSPPYG00000017711 SNX10 (ENSPPYG00000017713) #20 CBX3 (ENSPPYG00000017714) #21 HNRNPA2B1 (ENSPPYG00000017715) #22 NFE2L3 (ENSPPYG00000017716) #23 NPVF (ENSPPYG00000017717) #24 C7orf31 (ENSPPYG00000017718) #25 CYCS (ENSPPYG00000039115) #26 OSBPL3 (ENSPPYG00000017720) #30 GSDME (ENSPPYG00000017721) #31 PALS2 (ENSPPYG00000017722) #32 NPY (ENSPPYG00000017723) #34 STK31 (ENSPPYG00000017724) #37 FAM221A (ENSPPYG00000017725) CCDC126 (ENSPPYG00000017726) ENSPPYG00000036051 ENSPPYG00000017728 ENSPPYG00000038254 IGF2BP3 (ENSPPYG00000017730) Homo/Pan/Gorilla group ANCESTRAL SPECIES 25 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b.c #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000154947.f.b ENSGT00390000015089.d ENSGT00910000147494 ENSGT00940000157167 Gorilla MODERN SPECIES 20 HOXA7 (ENSGGOG00000002220) #11 HOXA6 (ENSGGOG00000002218) #12 HOXA5 (ENSGGOG00000002217) #13 ENSGGOG00000002215 #14 HOXA3 (ENSGGOG00000002213) #15 HOXA2 (ENSGGOG00000002211) #16 HOXA1 (ENSGGOG00000002209) #17 ENSGGOG00000027198 ENSGGOG00000012668 ENSGGOG00000027139 SKAP2 (ENSGGOG00000002146) #19 ENSGGOG00000027200 ENSGGOG00000011876 SNX10 (ENSGGOG00000003419) #20 CBX3 (ENSGGOG00000025853) #21 HNRNPA2B1 (ENSGGOG00000017072) #22 NFE2L3 (ENSGGOG00000025881) #23 NPVF (ENSGGOG00000011997) #24 C7orf31 (ENSGGOG00000016477) #25 CYCS (ENSGGOG00000024588) #26 OSBPL3 (ENSGGOG00000010510) #30 GSDME (ENSGGOG00000005163) #31 PALS2 (ENSGGOG00000005158) #32 NPY (ENSGGOG00000028114) #34 ENSGGOG00000034995 #37 FAM221A (ENSGGOG00000001295) ENSGGOG00000039812 CCDC126 (ENSGGOG00000026042) TRA2A (ENSGGOG00000009053) ENSGGOG00000039579 IGF2BP3 (ENSGGOG00000010286) Homo/Pan group ANCESTRAL SPECIES 24 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b.c #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000154947.f.b ENSGT00390000015089.d ENSGT00910000147494 ENSGT00940000157167 Pan ANCESTRAL SPECIES 25 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT01030000234542.b.a.a.a.b.a.b.c.a.b ENSGT00940000153299.c.b.a.b.a.a.a ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b.c #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.c.a.a.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000154947.f.b ENSGT00390000015089.d ENSGT00910000147494 ENSGT00940000157167 Bonobo MODERN SPECIES 20 HOXA7 (ENSPPAG00000034362) #11 HOXA6 (ENSPPAG00000039975) #12 HOXA5 (ENSPPAG00000044047) #13 ENSPPAG00000043774 #14 HOXA3 (ENSPPAG00000032603) #15 HOXA2 (ENSPPAG00000035694) #16 HOXA1 (ENSPPAG00000000155) #17 ENSPPAG00000038834 ENSPPAG00000000147 ENSPPAG00000033310 SKAP2 (ENSPPAG00000030605) #19 ENSPPAG00000028025 ENSPPAG00000027824 SNX10 (ENSPPAG00000038529) #20 CBX3 (ENSPPAG00000040392) #21 HNRNPA2B1 (ENSPPAG00000037520) #22 NFE2L3 (ENSPPAG00000027421) #23 NPVF (ENSPPAG00000010942) #24 C7orf31 (ENSPPAG00000043484) #25 CYCS (ENSPPAG00000017160) #26 OSBPL3 (ENSPPAG00000034347) #30 GSDME (ENSPPAG00000020017) #31 PALS2 (ENSPPAG00000036410) #32 NPY (ENSPPAG00000016967) #34 STK31 (ENSPPAG00000041589) #37 FAM221A (ENSPPAG00000041265) CCDC126 (ENSPPAG00000023938) ENSPPAG00000032686 ENSPPAG00000032195 TRA2A (ENSPPAG00000034382) ENSPPAG00000032190 Chimpanzee MODERN SPECIES 20 HOXA7 (ENSPTRG00000019017) #11 HOXA6 (ENSPTRG00000039535) #12 ENSPTRG00000019015 #13 HOXA4 (ENSPTRG00000023597) #14 HOXA3 (ENSPTRG00000019012) #15 HOXA2 (ENSPTRG00000019011) #16 HOXA1 (ENSPTRG00000019010) #17 ENSPTRG00000049011 ENSPTRG00000044997 ENSPTRG00000049392 SKAP2 (ENSPTRG00000019007) #19 ENSPTRG00000039177 ENSPTRG00000019006 SNX10 (ENSPTRG00000019004) #20 CBX3 (ENSPTRG00000019003) ##21 HNRNPA2B1 (ENSPTRG00000019002) #22 NFE2L3 (ENSPTRG00000019000) #23 NPVF (ENSPTRG00000018998) #24 C7H7orf31 (ENSPTRG00000018997) #25 CYCS (ENSPTRG00000018996) #26 OSBPL3 (ENSPTRG00000018995) #30 GSDME (ENSPTRG00000018994) #31 PALS2 (ENSPTRG00000018993) #32 NPY (ENSPTRG00000018992) #34 ENSPTRG00000050945 STK31 (ENSPTRG00000018991) #37 FAM221A (ENSPTRG00000018990) CCDC126 (ENSPTRG00000018989) ENSPTRG00000043234 ENSPTRG00000046014 ENSPTRG00000046677 Platyrrhini ANCESTRAL SPECIES 10 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00910000146860.b ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Cebidae ANCESTRAL SPECIES 9 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00910000146860.b ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Cebidae_a ANCESTRAL SPECIES 7 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT01090000260040.b.b.b.b.b ENSGT00390000015236 #25 ENSGT00390000009405.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00910000146860.b ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000153566.a.h Bolivian squirrel monkey MODERN SPECIES 112 HOXA13 (ENSSBOG00000024071) #7 HOXA11 (ENSSBOG00000020434) #8 HOXA10 (ENSSBOG00000033844) HOXA9 (ENSSBOG00000033572) #10 HOXA7 (ENSSBOG00000023282) #11 HOXA6 (ENSSBOG00000026859) #12 HOXA5 (ENSSBOG00000027127) #13 ENSSBOG00000026625 #14 HOXA3 (ENSSBOG00000031444) #15 HOXA2 (ENSSBOG00000024057) #16 HOXA1 (ENSSBOG00000022017) #17 ENSSBOG00000035175 SKAP2 (ENSSBOG00000022367) #19 SNX10 (ENSSBOG00000026009) #20 ENSSBOG00000029159 #21 HNRNPA2B1 (ENSSBOG00000005245) #22 NFE2L3 (ENSSBOG00000028975) #23 ENSSBOG00000028454 ENSSBOG00000027366 NPVF (ENSSBOG00000020608) #24 ENSSBOG00000027136 C7orf31 (ENSSBOG00000030318) #25 OSBPL3 (ENSSBOG00000031298) #30 GSDME (ENSSBOG00000023554) #31 PALS2 (ENSSBOG00000020815) #32 NPY (ENSSBOG00000023880) #34 ENSSBOG00000006781 STK31 (ENSSBOG00000033536) #37 FAM221A (ENSSBOG00000021284) ENSSBOG00000032133 CCDC126 (ENSSBOG00000018628) Capuchin MODERN SPECIES 45 EVX1 (ENSCCAG00000030309) HOXA13 (ENSCCAG00000028264) #7 HOXA11 (ENSCCAG00000035880) #8 HOXA10 (ENSCCAG00000034574) HOXA9 (ENSCCAG00000029541) #10 HOXA7 (ENSCCAG00000024332) #11 HOXA6 (ENSCCAG00000010092) #12 HOXA5 (ENSCCAG00000029402) #13 HOXA4 (ENSCCAG00000027072) #14 HOXA3 (ENSCCAG00000023332) #15 HOXA2 (ENSCCAG00000027236) #16 HOXA1 (ENSCCAG00000023769) #17 SKAP2 (ENSCCAG00000034754) #19 SNX10 (ENSCCAG00000029733) #20 CBX3 (ENSCCAG00000027804) #21 HNRNPA2B1 (ENSCCAG00000029074) #22 NFE2L3 (ENSCCAG00000031243) #23 ENSCCAG00000022491 NPVF (ENSCCAG00000030493) #24 ENSCCAG00000020933 C7orf31 (ENSCCAG00000003818) #25 ENSCCAG00000026670 #26 OSBPL3 (ENSCCAG00000037568) #30 GSDME (ENSCCAG00000026650) #31 PALS2 (ENSCCAG00000037294) #32 NPY (ENSCCAG00000031249) #34 STK31 (ENSCCAG00000027635) #37 FAM221A (ENSCCAG00000037127) ENSCCAG00000026868 CCDC126 (ENSCCAG00000034455) ENSCCAG00000023919 Marmoset MODERN SPECIES 20 HOXA10 (ENSCJAG00000081224) HOXA9 (ENSCJAG00000038531) #10 HOXA7 (ENSCJAG00000080800) #11 HOXA6 (ENSCJAG00000077854) #12 HOXA5 (ENSCJAG00000047690) #13 HOXA4 (ENSCJAG00000008058) #14 HOXA3 (ENSCJAG00000043202) #15 HOXA2 (ENSCJAG00000008032) #16 HOXA1 (ENSCJAG00000008024) #17 ENSCJAG00000080948 ENSCJAG00000074413 ENSCJAG00000072929 SKAP2 (ENSCJAG00000007979) #19 SNX10 (ENSCJAG00000060087) #20 CBX3 (ENSCJAG00000007952) ##21 HNRNPA2B1 (ENSCJAG00000007908) #22 NFE2L3 (ENSCJAG00000007897) #23 ENSCJAG00000087067 ENSCJAG00000075759 ENSCJAG00000084957 ##27 NPVF (ENSCJAG00000007888) #24 C7orf31 (ENSCJAG00000063137) #25 ENSCJAG00000074356 #26 ENSCJAG00000071449 OSBPL3 (ENSCJAG00000007746) #30 GSDME (ENSCJAG00000007718) #31 PALS2 (ENSCJAG00000007689) #32 NPY (ENSCJAG00000078083) #34 STK31 (ENSCJAG00000007625) #37 FAM221A (ENSCJAG00000007603) CCDC126 (ENSCJAG00000039115) Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 651 KIFBP (ENSANAG00000023947) ENSANAG00000024391 ENSANAG00000038214 DDX21 (ENSANAG00000038109) ENSANAG00000017521 DDX50 (ENSANAG00000017785) STOX1 (ENSANAG00000025724) CCAR1 (ENSANAG00000023002) TET1 (ENSANAG00000028392) SLC25A16 (ENSANAG00000020312) DNA2 (ENSANAG00000037527) RUFY2 (ENSANAG00000032945) HNRNPH3 (ENSANAG00000024326) PBLD (ENSANAG00000035799) ATOH7 (ENSANAG00000019535) ENSANAG00000020524 #22 MYPN (ENSANAG00000011534) HERC4 (ENSANAG00000012094) SIRT1 (ENSANAG00000035959) DNAJC12 (ENSANAG00000032830) CTNNA3 (ENSANAG00000017798) LRRTM3 (ENSANAG00000037749) Mas night monkey MODERN SPECIES 442 HOXA13 (ENSANAG00000027275) #7 HOXA11 (ENSANAG00000023241) #8 HOXA10 (ENSANAG00000024989) HOXA9 (ENSANAG00000027317) #10 HOXA7 (ENSANAG00000033107) #11 HOXA6 (ENSANAG00000021101) #12 HOXA5 (ENSANAG00000034612) #13 HOXA4 (ENSANAG00000036216) #14 HOXA3 (ENSANAG00000021432) #15 HOXA2 (ENSANAG00000025238) #16 HOXA1 (ENSANAG00000037615) #17 ENSANAG00000025984 SKAP2 (ENSANAG00000029886) #19 SNX10 (ENSANAG00000021914) #20 CBX3 (ENSANAG00000022611) #21 ENSANAG00000033016 #22 NFE2L3 (ENSANAG00000027774) #23 NPVF (ENSANAG00000035252) #24 C7orf31 (ENSANAG00000027077) #25 ENSANAG00000033583 ENSANAG00000028593 #26 ENSANAG00000033111 OSBPL3 (ENSANAG00000028296) #30 ENSANAG00000021188 ENSANAG00000026482 GSDME (ENSANAG00000035451) #31 PALS2 (ENSANAG00000022814) #32 NPY (ENSANAG00000024297) #34 STK31 (ENSANAG00000029927) #37 FAM221A (ENSANAG00000025669) ENSANAG00000030837 Tarsier MODERN SPECIES 5236 SKAP2 (ENSTSYG00000002308) #19 SNX10 (ENSTSYG00000008160) #20 CBX3 (ENSTSYG00000037013) #21 HNRNPA2B1 (ENSTSYG00000008124) #22 ENSTSYG00000037450 Strepsirrhini ANCESTRAL SPECIES 9 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007.c #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.a ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT01030000235027 ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Bushbaby MODERN SPECIES 143 EVX1 (ENSOGAG00000031221) HOXA13 (ENSOGAG00000028983) #7 HOXA11 (ENSOGAG00000012389) #8 HOXA10 (ENSOGAG00000012385) HOXA9 (ENSOGAG00000015000) #10 HOXA7 (ENSOGAG00000032482) #11 HOXA6 (ENSOGAG00000012384) #12 HOXA5 (ENSOGAG00000031153) #13 HOXA4 (ENSOGAG00000028670) #14 HOXA3 (ENSOGAG00000027664) #15 HOXA2 (ENSOGAG00000012372) #16 HOXA1 (ENSOGAG00000012370) #17 SKAP2 (ENSOGAG00000012366) #19 ENSOGAG00000004065 #20 ENSOGAG00000016583 ##21 ENSOGAG00000015353 #22 NFE2L3 (ENSOGAG00000015349) #23 C7orf31 (ENSOGAG00000015803) #25 OSBPL3 (ENSOGAG00000003401) #30 GSDME (ENSOGAG00000003400) #31 PALS2 (ENSOGAG00000003397) #32 NPY (ENSOGAG00000024572) #34 STK31 (ENSOGAG00000013559) #37 FAM221A (ENSOGAG00000013551) CCDC126 (ENSOGAG00000024333) TRA2A (ENSOGAG00000009733) IGF2BP3 (ENSOGAG00000017159) MALSU1 (ENSOGAG00000017157) GPNMB (ENSOGAG00000017155) NUP42 (ENSOGAG00000017153) KLHL7 (ENSOGAG00000017098) Lemuriformes ANCESTRAL SPECIES 4 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007.c #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.a ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000004428.a.h.d.a.b ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT01030000235027 ENSGT00940000157167 ENSGT00940000154957.B Mouse lemur MODERN SPECIES 2 EVX1 (ENSMICG00000031887) HOXA13 (ENSMICG00000043155) #7 HOXA11 (ENSMICG00000033824) #8 HOXA10 (ENSMICG00000027113) HOXA9 (ENSMICG00000045382) #10 HOXA7 (ENSMICG00000028330) #11 HOXA5 (ENSMICG00000046770) #13 ENSMICG00000046352 HOXA3 (ENSMICG00000030351) #15 HOXA2 (ENSMICG00000047950) #16 HOXA1 (ENSMICG00000041792) #17 ENSMICG00000030368 SKAP2 (ENSMICG00000000466) #19 SNX10 (ENSMICG00000036618) #20 CBX3 (ENSMICG00000033535) #21 ENSMICG00000030570 #22 NFE2L3 (ENSMICG00000032091) #23 NPVF (ENSMICG00000000759) #24 C7orf31 (ENSMICG00000000758) #25 ENSMICG00000045862 ##26 OSBPL3 (ENSMICG00000000756) #30 GSDME (ENSMICG00000000755) #31 PALS2 (ENSMICG00000004206) #32 ENSMICG00000046424 NPY (ENSMICG00000000511) #34 ENSMICG00000042222 STK31 (ENSMICG00000012021) #37 FAM221A (ENSMICG00000038246) CCDC126 (ENSMICG00000044703) ENSMICG00000046270 ENSMICG00000044121 Lemuriformes_a ANCESTRAL SPECIES 66 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007.c #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b.a ##26 ENSGT00390000009405.a.a.a.b.a.b.a.a ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000004428.a.h.d.a.b ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT01030000235027 ENSGT00940000157167 Greater bamboo lemur MODERN SPECIES 586 EVX1 (ENSPSMG00000014785) HOXA13 (ENSPSMG00000014769) #7 HOXA11 (ENSPSMG00000014731) #8 ENSPSMG00000014718 #9 ENSPSMG00000014712 #9 HOXA9 (ENSPSMG00000014704) #10 HOXA7 (ENSPSMG00000014695) #11 HOXA6 (ENSPSMG00000014685) #12 HOXA5 (ENSPSMG00000014678) #13 HOXA3 (ENSPSMG00000014673) #15 HOXA2 (ENSPSMG00000014668) #16 HOXA1 (ENSPSMG00000014634) #17 SKAP2 (ENSPSMG00000014602) #19 SNX10 (ENSPSMG00000014541) #20 ENSPSMG00000014512 #21 HNRNPA2B1 (ENSPSMG00000014452) #22 NFE2L3 (ENSPSMG00000014366) #23 NPVF (ENSPSMG00000014349) #24 C7orf31 (ENSPSMG00000014334) #25 ENSPSMG00000014288 ##26 ENSPSMG00000014277 OSBPL3 (ENSPSMG00000014087) #30 GSDME (ENSPSMG00000013865) #31 PALS2 (ENSPSMG00000013808) #32 NPY (ENSPSMG00000013748) #34 ENSPSMG00000013730 STK31 (ENSPSMG00000013704) #37 FAM221A (ENSPSMG00000013578) CCDC126 (ENSPSMG00000013520) TRA2A (ENSPSMG00000013516) ENSPSMG00000013507 Euarchontoglires_A ANCESTRAL SPECIES 23 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT01030000235027 ENSGT00940000157167 ENSGT00940000154957.B Glires ANCESTRAL SPECIES 24 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.f #26 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT01030000235027 ENSGT00940000157167 ENSGT00940000154957.B Lagomorpha ANCESTRAL SPECIES 39 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.e.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Rabbit MODERN SPECIES 1 EVX1 (ENSOCUG00000015159) HOXA13 (ENSOCUG00000024694) #7 HOXA11 (ENSOCUG00000015170) #8 HOXA10 (ENSOCUG00000029439) HOXA9 (ENSOCUG00000020585) #10 HOXA7 (ENSOCUG00000015183) #11 HOXA5 (ENSOCUG00000029580) #13 ENSOCUG00000015190 #14 HOXA3 (ENSOCUG00000027405) #15 HOXA2 (ENSOCUG00000015205) #16 HOXA1 (ENSOCUG00000015215) #17 ENSOCUG00000022860 SKAP2 (ENSOCUG00000011330) #19 SNX10 (ENSOCUG00000004744) #20 ENSOCUG00000002464 #21 ENSOCUG00000026859 #22 NFE2L3 (ENSOCUG00000003140) #23 ENSOCUG00000030043 NPVF (ENSOCUG00000009530) #24 C7orf31 (ENSOCUG00000009523) #25 ENSOCUG00000025605 #26 OSBPL3 (ENSOCUG00000007990) #30 GSDME (ENSOCUG00000006691) #31 PALS2 (ENSOCUG00000014659) #32 NPY (ENSOCUG00000010761) #34 STK31 (ENSOCUG00000004738) #37 CCDC126 (ENSOCUG00000012389) ENSOCUG00000037847 TRA2A (ENSOCUG00000024139) IGF2BP3 (ENSOCUG00000008976) MALSU1 (ENSOCUG00000008972) Rodentia ANCESTRAL SPECIES 12 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B ENSGT00390000015035 Rodentia_B ANCESTRAL SPECIES 9 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B ENSGT00390000015035 Kangaroo rat MODERN SPECIES 395 Hoxa13 (ENSDORG00000006328) #7 Hoxa11 (ENSDORG00000006326) #8 ENSDORG00000028643 #9 ENSDORG00000029112 Hoxa9 (ENSDORG00000006323) #10 Hoxa7 (ENSDORG00000006321) #11 Hoxa6 (ENSDORG00000006319) #12 Hoxa5 (ENSDORG00000025053) #13 Hoxa3 (ENSDORG00000027678) #15 Hoxa4 (ENSDORG00000006316) #14 Hoxa2 (ENSDORG00000006312) #16 Hoxa1 (ENSDORG00000006311) #17 Skap2 (ENSDORG00000009682) #19 Snx10 (ENSDORG00000028812) #20 ENSDORG00000005487 #21 Hnrnpa2b1 (ENSDORG00000005482) #22 Nfe2l3 (ENSDORG00000027950) #23 Npvf (ENSDORG00000027438) #24 4921507P07Rik (ENSDORG00000004102) #25 Cycs (ENSDORG00000029787) ##26 Osbpl3 (ENSDORG00000011217) #30 ENSDORG00000027677 #30 Gsdme (ENSDORG00000004130) #31 Pals2 (ENSDORG00000004129) #32 Npy (ENSDORG00000002630) #34 Stk31 (ENSDORG00000016315) #37 Fam221a (ENSDORG00000028229) Ccdc126 (ENSDORG00000029920) ENSDORG00000028485 Tra2a (ENSDORG00000009361) ENSDORG00000024592 Myomorpha ANCESTRAL SPECIES 8 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.a ##26 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES ENSJJAG00000000423 #22 Lesser Egyptian jerboa MODERN SPECIES 1 ENSJJAG00000000278 #22 Muroidea ANCESTRAL SPECIES 8 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.a ##26 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Muroidea_A ANCESTRAL SPECIES 4 ENSGT00940000162322 #7 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.a ##26 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Cricetidae ANCESTRAL SPECIES 3 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B ENSGT00390000015035 Cricetinae ANCESTRAL SPECIES 8 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Chinese hamster chok1gshd MODERN SPECIES 212 Hoxa13 (ENSCGRG00001017295) #7 Hoxa11 (ENSCGRG00001014980) #8 Hoxa10 (ENSCGRG00001012738) Hoxa9 (ENSCGRG00001007287) #10 Hoxa7 (ENSCGRG00001019884) #11 Hoxa6 (ENSCGRG00001003922) #12 Hoxa5 (ENSCGRG00001001687) #13 Hoxa4 (ENSCGRG00001000481) #14 Hoxa3 (ENSCGRG00001023867) #15 Hoxa2 (ENSCGRG00001019226) #16 Hoxa1 (ENSCGRG00001018306) #17 ENSCGRG00001016005 Skap2 (ENSCGRG00001015578) #19 Snx10 (ENSCGRG00001006115) #20 Cbx3 (ENSCGRG00001024311) #21 Hnrnpa2b1 (ENSCGRG00001022416) #22 Nfe2l3 (ENSCGRG00001020882) #23 Npvf (ENSCGRG00001013575) #24 4921507P07Rik (ENSCGRG00001011704) #25 Cycs (ENSCGRG00001008806) ##26 Osbpl3 (ENSCGRG00001016467) #30 Gsdme (ENSCGRG00001000822) #31 Pals2 (ENSCGRG00001014383) #32 Npy (ENSCGRG00001016547) #34 Stk31 (ENSCGRG00001021953) #37 Fam221a (ENSCGRG00001015242) Ccdc126 (ENSCGRG00001011659) Tra2a (ENSCGRG00001019980) Igf2bp3 (ENSCGRG00001011804) Malsu1 (ENSCGRG00001007836) Gpnmb (ENSCGRG00001018141) Golden Hamster MODERN SPECIES 822 ENSMAUG00000000426 ENSMAUG00000000446 Evx1 (ENSMAUG00000000608) Hoxa13 (ENSMAUG00000001019) #7 Hoxa11 (ENSMAUG00000001056) #8 Hoxa10 (ENSMAUG00000001122) Hoxa9 (ENSMAUG00000000669) #10 Hoxa7 (ENSMAUG00000001017) #11 Hoxa3 (ENSMAUG00000001129) #15 Hoxa6 (ENSMAUG00000001166) #12 Hoxa5 (ENSMAUG00000002058) #13 ENSMAUG00000002622 #19 Snx10 (ENSMAUG00000003697) #20 ENSMAUG00000004290 ##21 Hnrnpa2b1 (ENSMAUG00000005706) #22 ENSMAUG00000004168 Npvf (ENSMAUG00000006780) #24 4921507P07Rik (ENSMAUG00000007334) #25 Cricetidae_B ANCESTRAL SPECIES 10 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.a ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B ENSGT00390000015035 Northern American deer mouse MODERN SPECIES 16 Hoxa13 (ENSPEMG00000024341) #7 Hoxa11 (ENSPEMG00000019890) #8 ENSPEMG00000025887 #9 ENSPEMG00000020209 #10 ENSPEMG00000025086 Hoxa6 (ENSPEMG00000030268) #12 Hoxa5 (ENSPEMG00000029029) #13 ENSPEMG00000019740 #14 Hoxa3 (ENSPEMG00000028539) #15 Hoxa2 (ENSPEMG00000019520) #16 Hoxa1 (ENSPEMG00000020130) #17 ENSPEMG00000027861 Skap2 (ENSPEMG00000019639) #19 Snx10 (ENSPEMG00000005121) #20 Cbx3 (ENSPEMG00000020155) #21 Hnrnpa2b1 (ENSPEMG00000014384) #22 Nfe2l3 (ENSPEMG00000030696) #23 Npvf (ENSPEMG00000004324) #24 4921507P07Rik (ENSPEMG00000020256) #25 ENSPEMG00000028008 ##26 Osbpl3 (ENSPEMG00000019801) #30 Gsdme (ENSPEMG00000008779) #31 Pals2 (ENSPEMG00000019515) #32 Npy (ENSPEMG00000020414) #34 Stk31 (ENSPEMG00000020643) #37 Fam221a (ENSPEMG00000022606) ENSPEMG00000027992 ENSPEMG00000008564 Igf2bp3 (ENSPEMG00000023450) ENSPEMG00000020458 Gpnmb (ENSPEMG00000001851) Prairie vole MODERN SPECIES 94 Hoxa13 (ENSMOCG00000000460) #7 Hoxa11 (ENSMOCG00000004073) #8 Hoxa10 (ENSMOCG00000011516) Hoxa9 (ENSMOCG00000017667) #10 Hoxa7 (ENSMOCG00000001247) #11 Hoxa3 (ENSMOCG00000004227) #15 Hoxa6 (ENSMOCG00000010245) #12 Hoxa5 (ENSMOCG00000012515) #13 Hoxa4 (ENSMOCG00000011933) #14 ENSMOCG00000016584 Hoxa2 (ENSMOCG00000019225) #16 Hoxa1 (ENSMOCG00000005031) #17 Skap2 (ENSMOCG00000017060) #19 Snx10 (ENSMOCG00000016046) #20 Cbx3 (ENSMOCG00000008087) ##21 Hnrnpa2b1 (ENSMOCG00000009258) #22 Nfe2l3 (ENSMOCG00000011787) #23 Npvf (ENSMOCG00000009097) #24 4921507P07Rik (ENSMOCG00000011632) #25 ENSMOCG00000012702 ##26 ENSMOCG00000018163 #30 Gsdme (ENSMOCG00000018193) #31 Pals2 (ENSMOCG00000015580) #32 Npy (ENSMOCG00000011513) #34 Murinae ANCESTRAL SPECIES 4 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.a ##21 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.a ##26 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Rat MODERN SPECIES 14 Hoxa11 (ENSRNOG00000059870) #8 LOC100911668 (ENSRNOG00000065199) Hoxa9 (ENSRNOG00000064322) #10 Hoxa7 (ENSRNOG00000046361) #11 LOC100911511 (ENSRNOG00000048917) #12 LOC103692127 (ENSRNOG00000047951) #13 Hoxa4 (ENSRNOG00000027365) #14 Hoxa3 (ENSRNOG00000006281) #15 Hoxa2 (ENSRNOG00000005968) #16 Hoxa1 (ENSRNOG00000005628) #17 Skap2 (ENSRNOG00000012228) #19 ENSRNOG00000064847 Snx10 (ENSRNOG00000011944) #20 AABR07060577.1 (ENSRNOG00000015328) Cbx3 (ENSRNOG00000011814) #21 Hnrnpa2b1 (ENSRNOG00000011175) #22 Nfe2l3 (ENSRNOG00000010886) #23 Cux1-ps1 (ENSRNOG00000065301) ENSRNOG00000062862 Npvf (ENSRNOG00000010806) #24 LOC500124 (ENSRNOG00000010594) #25 Cycs-ps9 (ENSRNOG00000010452) ##26 AC113910.1 (ENSRNOG00000033274) Osbpl3 (ENSRNOG00000010011) #30 Gsdme (ENSRNOG00000009970) #31 Pals2 (ENSRNOG00000021579) #32 Npy (ENSRNOG00000046449) #34 RGD1564712 (ENSRNOG00000043158) ENSRNOG00000065775 Stk31 (ENSRNOG00000057554) #37 RGD1563352 (ENSRNOG00000009583) Mus ANCESTRAL SPECIES 20 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000168920 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.a ##21 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Mus_A ANCESTRAL SPECIES 7 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000168920 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Mus_B ANCESTRAL SPECIES 20 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000168920 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Mus_C ANCESTRAL SPECIES 19 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000168920 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.a ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Steppe mouse MODERN SPECIES 3410 Hoxa11 (ENSMSIG00000009809) #8 ENSMSIG00000009817 #9 Hoxa9 (ENSMSIG00000009832) #10 Hoxa7 (ENSMSIG00000009836) #11 Hoxa6 (ENSMSIG00000009850) #12 ENSMSIG00000009856 #13 Hoxa4 (ENSMSIG00000009874) #14 Hoxa3 (ENSMSIG00000009863) #15 ENSMSIG00000009893 ENSMSIG00000009910 Hoxa2 (ENSMSIG00000009914) #16 Hoxa1 (ENSMSIG00000009971) #17 Skap2 (ENSMSIG00000009994) #19 Snx10 (ENSMSIG00000010059) #20 Cbx3 (ENSMSIG00000010130) #21 Hnrnpa2b1 (ENSMSIG00000010191) #22 Nfe2l3 (ENSMSIG00000010307) #23 spretus MODERN SPECIES 15 MGP_SPRETEiJ_G0029394 #7 Hoxa11 (MGP_SPRETEiJ_G0029393) #8 Hoxa10 (MGP_SPRETEiJ_G0029392) Hoxa9 (MGP_SPRETEiJ_G0029391) #10 Hoxa7 (MGP_SPRETEiJ_G0029390) #11 Hoxa6 (MGP_SPRETEiJ_G0029389) #12 Hoxa5 (MGP_SPRETEiJ_G0029388) #13 Hoxa4 (MGP_SPRETEiJ_G0029387) #14 Hoxa3 (MGP_SPRETEiJ_G0029386) #15 MGP_SPRETEiJ_G0029385 Hoxa2 (MGP_SPRETEiJ_G0029384) #16 Hoxa1 (MGP_SPRETEiJ_G0029383) #17 Skap2 (MGP_SPRETEiJ_G0029382) #19 Snx10 (MGP_SPRETEiJ_G0029381) #20 MGP_SPRETEiJ_G0029380 ##21 Hnrnpa2b1 (MGP_SPRETEiJ_G0029379) #22 Nfe2l3 (MGP_SPRETEiJ_G0029378) #23 Npvf (MGP_SPRETEiJ_G0029377) #24 4921507P07Rik (MGP_SPRETEiJ_G0029376) #25 Osbpl3 (MGP_SPRETEiJ_G0029375) #30 Gsdme (MGP_SPRETEiJ_G0029374) #31 Pals2 (MGP_SPRETEiJ_G0029373) #32 Npy (MGP_SPRETEiJ_G0029372) #34 Stk31 (MGP_SPRETEiJ_G0029371) #37 Fam221a (MGP_SPRETEiJ_G0029370) Ccdc126 (MGP_SPRETEiJ_G0029369) Tra2a (MGP_SPRETEiJ_G0029368) Igf2bp3 (MGP_SPRETEiJ_G0029367) Malsu1 (MGP_SPRETEiJ_G0029366) Gpnmb (MGP_SPRETEiJ_G0029365) Aoc1l3 (MGP_SPRETEiJ_G0029364) Mouse MODERN SPECIES 15 Evx1 (ENSMUSG00000005503) Hoxa13 (ENSMUSG00000038203) #7 Hoxa11 (ENSMUSG00000038210) #8 Hoxa10 (ENSMUSG00000000938) Hoxa9 (ENSMUSG00000038227) #10 Hoxa7 (ENSMUSG00000038236) #11 Hoxa6 (ENSMUSG00000043219) #12 Hoxa5 (ENSMUSG00000038253) #13 Hoxa4 (ENSMUSG00000000942) #14 Hoxa3 (ENSMUSG00000079560) #15 Hoxa2 (ENSMUSG00000014704) #16 Hoxa1 (ENSMUSG00000029844) #17 Skap2 (ENSMUSG00000059182) #19 Snx10 (ENSMUSG00000038301) #20 Cbx3 (ENSMUSG00000029836) #21 Hnrnpa2b1 (ENSMUSG00000004980) #22 Nfe2l3 (ENSMUSG00000029832) #23 Npvf (ENSMUSG00000029831) #24 4921507P07Rik (ENSMUSG00000029828) #25 Cycs (ENSMUSG00000063694) ##26 Osbpl3 (ENSMUSG00000029822) #30 Gsdme (ENSMUSG00000029821) #31 Pals2 (ENSMUSG00000038388) #32 Npy (ENSMUSG00000029819) #34 Stk31 (ENSMUSG00000023403) #37 Fam221a (ENSMUSG00000047115) Ccdc126 (ENSMUSG00000050786) Tra2a (ENSMUSG00000029817) Igf2bp3 (ENSMUSG00000029814) Malsu1 (ENSMUSG00000029815) Gpnmb (ENSMUSG00000029816) Ryukyu mouse MODERN SPECIES 15 Hoxa13 (MGP_CAROLIEiJ_G0028392) #7 Hoxa11 (MGP_CAROLIEiJ_G0028391) #8 Hoxa10 (MGP_CAROLIEiJ_G0028390) Hoxa9 (MGP_CAROLIEiJ_G0028389) #10 Hoxa7 (MGP_CAROLIEiJ_G0028388) #11 Hoxa5 (MGP_CAROLIEiJ_G0028387) #13 Hoxa4 (MGP_CAROLIEiJ_G0028386) #14 MGP_CAROLIEiJ_G0028385 Hoxa3 (MGP_CAROLIEiJ_G0028384) #15 MGP_CAROLIEiJ_G0028383 Hoxa2 (MGP_CAROLIEiJ_G0028382) #16 Hoxa1 (MGP_CAROLIEiJ_G0028381) #17 Skap2 (MGP_CAROLIEiJ_G0028380) #19 MGP_CAROLIEiJ_G0028379 #20 MGP_CAROLIEiJ_G0028378 ##21 Hnrnpa2b1 (MGP_CAROLIEiJ_G0028377) #22 Nfe2l3 (MGP_CAROLIEiJ_G0028376) #23 Npvf (MGP_CAROLIEiJ_G0028375) #24 4921507P07Rik (MGP_CAROLIEiJ_G0028374) #25 Cycs (MGP_CAROLIEiJ_G0028373) ##26 Osbpl3 (MGP_CAROLIEiJ_G0028372) #30 Gsdme (MGP_CAROLIEiJ_G0028371) #31 Pals2 (MGP_CAROLIEiJ_G0028370) #32 Npy (MGP_CAROLIEiJ_G0028369) #34 MGP_CAROLIEiJ_G0028368 #37 Fam221a (MGP_CAROLIEiJ_G0028367) Ccdc126 (MGP_CAROLIEiJ_G0028366) MGP_CAROLIEiJ_G0028365 Igf2bp3 (MGP_CAROLIEiJ_G0028364) Malsu1 (MGP_CAROLIEiJ_G0028363) Gpnmb (MGP_CAROLIEiJ_G0028362) Shrew mouse MODERN SPECIES 11 Hoxa13 (MGP_PahariEiJ_G0022142) #7 Hoxa11 (MGP_PahariEiJ_G0022141) #8 Hoxa10 (MGP_PahariEiJ_G0022140) Hoxa9 (MGP_PahariEiJ_G0022139) #10 Hoxa7 (MGP_PahariEiJ_G0022138) #11 Hoxa6 (MGP_PahariEiJ_G0022137) #12 Hoxa5 (MGP_PahariEiJ_G0022136) #13 Hoxa4 (MGP_PahariEiJ_G0022135) #14 Hoxa3 (MGP_PahariEiJ_G0022134) #15 MGP_PahariEiJ_G0022133 Hoxa2 (MGP_PahariEiJ_G0022132) #16 Hoxa1 (MGP_PahariEiJ_G0022131) #17 Skap2 (MGP_PahariEiJ_G0022130) #19 Snx10 (MGP_PahariEiJ_G0022129) #20 MGP_PahariEiJ_G0022128 ##21 Hnrnpa2b1 (MGP_PahariEiJ_G0022127) #22 Nfe2l3 (MGP_PahariEiJ_G0022126) #23 Npvf (MGP_PahariEiJ_G0022125) #24 4921507P07Rik (MGP_PahariEiJ_G0022124) #25 MGP_PahariEiJ_G0022123 ##26 Osbpl3 (MGP_PahariEiJ_G0022122) #30 Gsdme (MGP_PahariEiJ_G0022121) #31 Pals2 (MGP_PahariEiJ_G0022120) #32 Npy (MGP_PahariEiJ_G0022119) #34 Stk31 (MGP_PahariEiJ_G0022118) #37 Fam221a (MGP_PahariEiJ_G0022117) Ccdc126 (MGP_PahariEiJ_G0022116) Tra2a (MGP_PahariEiJ_G0022115) Igf2bp3 (MGP_PahariEiJ_G0022114) Malsu1 (MGP_PahariEiJ_G0022113) Gpnmb (MGP_PahariEiJ_G0022112) Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 724 ENSNGAG00000017486 #22 Tmprss15 (ENSNGAG00000022148) Chodl (ENSNGAG00000004103) Upper Galilee mountains blind mole rat MODERN SPECIES 1152 Hoxa11 (ENSNGAG00000023780) #8 ENSNGAG00000013764 ENSNGAG00000017228 #9 Hoxa9 (ENSNGAG00000016754) #10 Hoxa7 (ENSNGAG00000021697) #11 Hoxa6 (ENSNGAG00000012897) #12 Hoxa5 (ENSNGAG00000023140) #13 Hoxa4 (ENSNGAG00000022510) #14 Hoxa3 (ENSNGAG00000016765) #15 Hoxa2 (ENSNGAG00000014874) #16 Hoxa1 (ENSNGAG00000021363) #17 Skap2 (ENSNGAG00000016991) #19 ENSNGAG00000010519 Snx10 (ENSNGAG00000006392) #20 ENSNGAG00000024194 #21 Hnrnpa2b1 (ENSNGAG00000015156) #22 Nfe2l3 (ENSNGAG00000023028) #23 Npvf (ENSNGAG00000023484) #24 4921507P07Rik (ENSNGAG00000022528) #25 ENSNGAG00000013657 #26 ENSNGAG00000003815 ENSNGAG00000024141 #30 ENSNGAG00000024064 #31 Pals2 (ENSNGAG00000024039) #32 Npy (ENSNGAG00000009749) #34 ENSNGAG00000008884 Stk31 (ENSNGAG00000024195) #37 Fam221a (ENSNGAG00000022352) Ccdc126 (ENSNGAG00000021704) ENSNGAG00000006097 Tra2a (ENSNGAG00000023805) Rodentia_A ANCESTRAL SPECIES 12 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT01030000235027 ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Sciuridae ANCESTRAL SPECIES 7 ENSGT00940000162322 #7 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b.m.a ENSGT00940000157167.n ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Eurasian red squirrel MODERN SPECIES 17 HOXA13 (ENSSVLG00005012374) #7 ENSSVLG00005012350 HOXA11 (ENSSVLG00005012306) #8 HOXA10 (ENSSVLG00005012252) HOXA9 (ENSSVLG00005012091) #10 HOXA7 (ENSSVLG00005012041) #11 HOXA6 (ENSSVLG00005012001) #12 HOXA5 (ENSSVLG00005011967) #13 HOXA4 (ENSSVLG00005011927) #14 HOXA3 (ENSSVLG00005011881) #15 HOXA1 (ENSSVLG00005011664) #17 ENSSVLG00005011503 #19 SNX10 (ENSSVLG00005011242) #20 ENSSVLG00005011185 CBX3 (ENSSVLG00005011150) #21 ENSSVLG00005011063 #22 NFE2L3 (ENSSVLG00005021592) #23 ENSSVLG00005021555 ENSSVLG00005021514 ENSSVLG00005021470 ENSSVLG00005021453 ENSSVLG00005021443 NPVF (ENSSVLG00005021397) #24 ENSSVLG00005021309 #25 ENSSVLG00005021199 #25 ENSSVLG00005021155 ##26 OSBPL3 (ENSSVLG00005020998) #30 GSDME (ENSSVLG00005020913) #31 PALS2 (ENSSVLG00005020860) #32 NPY (ENSSVLG00005020816) #34 ENSSVLG00005020771 Marmotini ANCESTRAL SPECIES 37 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000154150.gd.a ENSGT00940000153470.a.a.a.b.m.a ENSGT00940000157167.n ENSGT00940000154957.B ENSGT00390000015035 Marmotini_b ANCESTRAL SPECIES 26 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000154150.gd.a ENSGT00940000153470.a.a.a.b.m.a ENSGT00940000154530.w ENSGT01030000235027 ENSGT00940000157167.n Squirrel MODERN SPECIES 78 EVX1 (ENSSTOG00000025642) HOXA13 (ENSSTOG00000029157) #7 HOXA11 (ENSSTOG00000022674) #8 ENSSTOG00000021212 #9 HOXA9 (ENSSTOG00000028613) #10 HOXA7 (ENSSTOG00000011208) #11 HOXA6 (ENSSTOG00000022675) #12 HOXA5 (ENSSTOG00000011206) #13 ENSSTOG00000024606 #14 HOXA3 (ENSSTOG00000021230) #15 HOXA2 (ENSSTOG00000016362) #16 HOXA1 (ENSSTOG00000024209) #17 SKAP2 (ENSSTOG00000021247) #19 SNX10 (ENSSTOG00000024131) #20 CBX3 (ENSSTOG00000006223) #21 ENSSTOG00000006202 #22 NFE2L3 (ENSSTOG00000014758) #23 NPVF (ENSSTOG00000008873) #24 C7orf31 (ENSSTOG00000008859) #25 OSBPL3 (ENSSTOG00000001755) #30 ENSSTOG00000014905 #31 PALS2 (ENSSTOG00000001908) #32 NPY (ENSSTOG00000020410) #34 ENSSTOG00000021917 ENSSTOG00000033576 STK31 (ENSSTOG00000003577) #37 ENSSTOG00000027960 ENSSTOG00000014113 ENSSTOG00000020371 ENSSTOG00000029732 CCDC126 (ENSSTOG00000021255) Arctic ground squirrel MODERN SPECIES 223 EVX1 (ENSUPAG00010017335) HOXA13 (ENSUPAG00010017357) #7 HOXA11 (ENSUPAG00010017374) #8 ENSUPAG00010017375 #9 HOXA9 (ENSUPAG00010017383) #10 HOXA7 (ENSUPAG00010017387) #11 HOXA6 (ENSUPAG00010017390) #12 HOXA5 (ENSUPAG00010017397) #13 HOXA4 (ENSUPAG00010017400) #14 HOXA3 (ENSUPAG00010017403) #15 HOXA2 (ENSUPAG00010017405) #16 HOXA1 (ENSUPAG00010017428) #17 SKAP2 (ENSUPAG00010017432) #19 SNX10 (ENSUPAG00010017455) #20 ENSUPAG00010017469 ##21 ENSUPAG00010017471 #22 ENSUPAG00010017632 #23 ENSUPAG00010017638 #23 ENSUPAG00010017645 NPVF (ENSUPAG00010017650) #24 C7orf31 (ENSUPAG00010017656) #25 ENSUPAG00010017667 ##26 OSBPL3 (ENSUPAG00010017676) #30 GSDME (ENSUPAG00010017948) #31 PALS2 (ENSUPAG00010017963) #32 NPY (ENSUPAG00010018066) #34 STK31 (ENSUPAG00010018074) #37 ENSUPAG00010018164 Alpin marmot MODERN SPECIES 26 HOXA13 (ENSMMMG00000006593) #7 HOXA11 (ENSMMMG00000006566) #8 ENSMMMG00000006561 #9 HOXA9 (ENSMMMG00000006550) #10 HOXA7 (ENSMMMG00000006545) #11 HOXA6 (ENSMMMG00000006535) #12 HOXA5 (ENSMMMG00000006523) #13 ENSMMMG00000006511 #14 HOXA3 (ENSMMMG00000006503) #15 HOXA2 (ENSMMMG00000006490) #16 HOXA1 (ENSMMMG00000006456) #17 ENSMMMG00000006435 ENSMMMG00000006429 #19 SNX10 (ENSMMMG00000006398) #20 ENSMMMG00000006360 #21 ENSMMMG00000006197 #22 ENSMMMG00000006190 #23 NPVF (ENSMMMG00000006151) #24 C7orf31 (ENSMMMG00000006134) #25 ENSMMMG00000006125 ##26 OSBPL3 (ENSMMMG00000005837) #30 GSDME (ENSMMMG00000005813) #31 PALS2 (ENSMMMG00000005665) #32 NPY (ENSMMMG00000005649) #34 ENSMMMG00000005635 STK31 (ENSMMMG00000005447) #37 ENSMMMG00000005429 ENSMMMG00000005362 ENSMMMG00000005357 TRA2A (ENSMMMG00000005330) IGF2BP3 (ENSMMMG00000005303) Hystricomorpha ANCESTRAL SPECIES 14 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.f #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT01030000235027 ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Hystricomorpha_a ANCESTRAL SPECIES 41 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.f #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT01030000235027 ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Guinea pig MODERN SPECIES 44 EVX1 (ENSCPOG00000011370) HOXA13 (ENSCPOG00000033640) #7 HOXA11 (ENSCPOG00000039723) #8 ENSCPOG00000031122 #9 HOXA9 (ENSCPOG00000011365) #10 HOXA6 (ENSCPOG00000032757) #12 HOXA5 (ENSCPOG00000035800) #13 ENSCPOG00000032985 #14 HOXA3 (ENSCPOG00000030159) #15 HOXA2 (ENSCPOG00000034959) #16 HOXA1 (ENSCPOG00000037658) #17 SKAP2 (ENSCPOG00000000258) #19 ENSCPOG00000037875 SNX10 (ENSCPOG00000006831) #20 CBX3 (ENSCPOG00000015168) #21 HNRNPA2B1 (ENSCPOG00000036630) #22 NFE2L3 (ENSCPOG00000037483) #23 NPVF (ENSCPOG00000013784) #24 C7orf31 (ENSCPOG00000013779) #25 ENSCPOG00000038520 #26 OSBPL3 (ENSCPOG00000007017) #30 GSDME (ENSCPOG00000015567) #31 PALS2 (ENSCPOG00000015565) #32 NPY (ENSCPOG00000026763) #34 STK31 (ENSCPOG00000032654) #37 FAM221A (ENSCPOG00000010187) CCDC126 (ENSCPOG00000035540) ENSCPOG00000035207 TRA2A (ENSCPOG00000010739) IGF2BP3 (ENSCPOG00000015070) MALSU1 (ENSCPOG00000015067) Hystricomorpha_b ANCESTRAL SPECIES 39 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.a.a.a.b.a.b.a.b ##26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Long-tailed chinchilla MODERN SPECIES 117 EVX1 (ENSCLAG00000010646) HOXA13 (ENSCLAG00000010361) #7 HOXA11 (ENSCLAG00000009905) #8 HOXA10 (ENSCLAG00000015066) HOXA9 (ENSCLAG00000010294) #10 HOXA7 (ENSCLAG00000008671) #11 HOXA6 (ENSCLAG00000006012) #12 HOXA5 (ENSCLAG00000004908) #13 ENSCLAG00000008251 #14 HOXA3 (ENSCLAG00000006878) #15 HOXA2 (ENSCLAG00000016180) #16 HOXA1 (ENSCLAG00000014364) #17 SKAP2 (ENSCLAG00000006785) #19 ENSCLAG00000005337 #20 ENSCLAG00000012267 #21 ENSCLAG00000014058 #22 NFE2L3 (ENSCLAG00000005908) #23 C7orf31 (ENSCLAG00000005045) #25 ENSCLAG00000004661 ##26 OSBPL3 (ENSCLAG00000008517) #30 GSDME (ENSCLAG00000013195) #31 PALS2 (ENSCLAG00000006677) #32 NPY (ENSCLAG00000004780) #34 STK31 (ENSCLAG00000006727) #37 FAM221A (ENSCLAG00000007737) CCDC126 (ENSCLAG00000006880) TRA2A (ENSCLAG00000007917) IGF2BP3 (ENSCLAG00000009835) MALSU1 (ENSCLAG00000008469) GPNMB (ENSCLAG00000004706) NUP42 (ENSCLAG00000007547) Degu DUPLICATION Degu MODERN SPECIES 445 ENSODEG00000000652 #22 Degu MODERN SPECIES 56 ENSODEG00000009794 ENSODEG00000009545 #9 HOXA9 (ENSODEG00000009347) #10 HOXA7 (ENSODEG00000008762) #11 HOXA6 (ENSODEG00000007928) #12 HOXA5 (ENSODEG00000007850) #13 ENSODEG00000007568 HOXA3 (ENSODEG00000009161) #15 HOXA2 (ENSODEG00000009002) #16 HOXA1 (ENSODEG00000008589) #17 ENSODEG00000009507 SKAP2 (ENSODEG00000008150) #19 ENSODEG00000019395 SNX10 (ENSODEG00000007480) #20 ENSODEG00000008405 #21 ENSODEG00000008757 #22 NFE2L3 (ENSODEG00000007181) #23 ENSODEG00000007532 ENSODEG00000007198 NPVF (ENSODEG00000009144) #24 ENSODEG00000011380 C7orf31 (ENSODEG00000008263) #25 ENSODEG00000007611 ##26 OSBPL3 (ENSODEG00000008161) #30 ENSODEG00000007712 #31 PALS2 (ENSODEG00000007676) #32 NPY (ENSODEG00000008296) #34 ENSODEG00000007836 ENSODEG00000019512 ENSODEG00000019686 ENSODEG00000009491 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 17 CYREN (ENSHGLG00000049991) WDR91 (ENSHGLG00000004516) STRA8 (ENSHGLG00000005005) ENSHGLG00000006398 CNOT4 (ENSHGLG00000011533) NUP205 (ENSHGLG00000016088) STMP1 (ENSHGLG00000046204) SLC13A4 (ENSHGLG00000004963) FAM180A (ENSHGLG00000005791) MTPN (ENSHGLG00000042267) ENSHGLG00000035315 ENSHGLG00000037486 ENSHGLG00000008188 CHRM2 (ENSHGLG00000009212) ENSHGLG00000009445 ENSHGLG00000010704 #22 PTN (ENSHGLG00000035687) DGKI (ENSHGLG00000012937) CREB3L2 (ENSHGLG00000018828) AKR1D1 (ENSHGLG00000014279) ENSHGLG00000043652 TRIM24 (ENSHGLG00000005195) SVOPL (ENSHGLG00000005360) ATP6V0A4 (ENSHGLG00000006131) KIAA1549 (ENSHGLG00000009787) ENSHGLG00000005299 ZC3HAV1 (ENSHGLG00000006700) TTC26 (ENSHGLG00000009066) ENSHGLG00000047005 UBN2 (ENSHGLG00000005428) FMC1 (ENSHGLG00000050501) Naked mole-rat female MODERN SPECIES 5 HOXA13 (ENSHGLG00000039960) #7 HOXA11 (ENSHGLG00000009266) #8 HOXA10 (ENSHGLG00000050027) HOXA9 (ENSHGLG00000045326) #10 ENSHGLG00000043027 #11 HOXA5 (ENSHGLG00000016863) #13 HOXA4 (ENSHGLG00000048807) #14 HOXA3 (ENSHGLG00000046038) #15 HOXA2 (ENSHGLG00000017804) #16 HOXA1 (ENSHGLG00000018117) #17 ENSHGLG00000036434 ENSHGLG00000045030 SKAP2 (ENSHGLG00000042970) #19 ENSHGLG00000050650 #20 ENSHGLG00000014772 #21 ENSHGLG00000015396 #22 NFE2L3 (ENSHGLG00000017200) #23 NPVF (ENSHGLG00000017985) #24 ENSHGLG00000041627 ENSHGLG00000016657 #25 ENSHGLG00000010213 ##26 ENSHGLG00000005743 ENSHGLG00000006403 ENSHGLG00000007144 ENSHGLG00000002212 ENSHGLG00000049918 ENSHGLG00000042213 POT1 (ENSHGLG00000003954) GPR37 (ENSHGLG00000032710) ENSHGLG00000036156 TMEM229A (ENSHGLG00000039371) Laurasiatheria ANCESTRAL SPECIES 22 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Eulipotyphla ANCESTRAL SPECIES ENSGT00940000154431.e.b #22 Hedgehog MODERN SPECIES 13573 HNRNPA2B1 (ENSEEUG00000014880) #22 Laurasiatheria_a ANCESTRAL SPECIES 14 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00390000009854 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Artiodactyla ANCESTRAL SPECIES 11 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Artiodactyla_a ANCESTRAL SPECIES 11 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.p #26 ENSGT00390000009405.b.o.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Camelidae ANCESTRAL SPECIES 2 ENSGT00930000152153 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000159522 #15 ENSGT00940000155029.c.a ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.f.c.b ##22 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.o.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Alpaca MODERN SPECIES 1205 ENSVPAG00000010420 SNX10 (ENSVPAG00000010419) #20 CBX3 (ENSVPAG00000010418) #21 HNRNPA2B1 (ENSVPAG00000010417) #22 NFE2L3 (ENSVPAG00000010416) #23 NPVF (ENSVPAG00000010415) #24 C7orf31 (ENSVPAG00000010414) #25 Artiodactyla_b ANCESTRAL SPECIES 11 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.p #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 ENSGT00940000160479 Cetacea ANCESTRAL SPECIES 13 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.a ##21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT01030000235330.c.a ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.o.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 Blue whale MODERN SPECIES 20 EVX1 (ENSBMSG00010013302) HOXA13 (ENSBMSG00010013314) #7 HOXA11 (ENSBMSG00010013325) #8 HOXA10 (ENSBMSG00010013344) HOXA9 (ENSBMSG00010013373) #10 HOXA7 (ENSBMSG00010013396) #11 HOXA6 (ENSBMSG00010013414) #12 HOXA5 (ENSBMSG00010013430) #13 HOXA4 (ENSBMSG00010013444) #14 HOXA3 (ENSBMSG00010013449) #15 HOXA2 (ENSBMSG00010013466) #16 ENSBMSG00010013476 #17 SKAP2 (ENSBMSG00010013495) #19 SNX10 (ENSBMSG00010013517) #20 ENSBMSG00010013565 ##21 ENSBMSG00010013581 #22 NFE2L3 (ENSBMSG00010013602) #23 ENSBMSG00010013621 NPVF (ENSBMSG00010013643) #24 C7orf31 (ENSBMSG00010013660) #25 ENSBMSG00010013701 #26 ENSBMSG00010013713 OSBPL3 (ENSBMSG00010013742) #30 GSDME (ENSBMSG00010007757) #31 PALS2 (ENSBMSG00010007846) #32 ENSBMSG00010007884 ENSBMSG00010007893 NPY (ENSBMSG00010007905) #34 ENSBMSG00010007911 ENSBMSG00010007916 ENSBMSG00010007922 #37 Odontoceti ANCESTRAL SPECIES 12 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.f.d ##22 ENSGT00940000153305.c.e.a ##21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT01030000235330.c.a ENSGT00390000003271 #24 ENSGT00390000009405.b.o.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 ENSGT00940000160479 Sperm whale MODERN SPECIES 16 EVX1 (ENSPCTG00005006960) HOXA13 (ENSPCTG00005006985) #7 HOXA11 (ENSPCTG00005000283) #8 ENSPCTG00005000317 #9 ENSPCTG00005000324 HOXA9 (ENSPCTG00005000359) #10 HOXA7 (ENSPCTG00005000380) #11 HOXA6 (ENSPCTG00005000391) #12 HOXA5 (ENSPCTG00005000400) #13 HOXA4 (ENSPCTG00005000409) #14 HOXA2 (ENSPCTG00005000420) #16 HOXA1 (ENSPCTG00005000429) #17 SKAP2 (ENSPCTG00005000453) #19 SNX10 (ENSPCTG00005000481) #20 ENSPCTG00005000501 ##21 HNRNPA2B1 (ENSPCTG00005000537) #22 NFE2L3 (ENSPCTG00005000589) #23 ENSPCTG00005000600 NPVF (ENSPCTG00005000613) #24 ENSPCTG00005000629 #26 ENSPCTG00005000640 OSBPL3 (ENSPCTG00005000674) #30 GSDME (ENSPCTG00005000772) #31 MPP6 (ENSPCTG00005000805) #32 NPY (ENSPCTG00005000824) #34 ENSPCTG00005000837 #37 ENSPCTG00005000876 #37 FAM221A (ENSPCTG00005000900) ADAM22 (ENSPCTG00005001052) SRI (ENSPCTG00005001464) STEAP4 (ENSPCTG00005001543) Odontoceti_a ANCESTRAL SPECIES 13 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000009405.b.o.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 ENSGT00940000160479 ENSGT00390000008042.A.a.b Odontoceti_b ANCESTRAL SPECIES 13 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000001447.pb.a ENSGT00390000003271 #24 ENSGT00390000009405.b.o.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155196.n.a ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 Vaquita MODERN SPECIES 20 EVX1 (ENSPSNG00000014065) HOXA13 (ENSPSNG00000014146) #7 HOXA11 (ENSPSNG00000014203) #8 HOXA10 (ENSPSNG00000014245) HOXA9 (ENSPSNG00000014307) #10 HOXA7 (ENSPSNG00000014456) #11 HOXA6 (ENSPSNG00000014504) #12 HOXA5 (ENSPSNG00000014558) #13 HOXA4 (ENSPSNG00000014619) #14 HOXA3 (ENSPSNG00000014676) #15 HOXA2 (ENSPSNG00000014724) #16 HOXA1 (ENSPSNG00000014773) #17 SKAP2 (ENSPSNG00000014836) #19 SNX10 (ENSPSNG00000014940) #20 ENSPSNG00000015118 ##21 ENSPSNG00000015202 #22 NFE2L3 (ENSPSNG00000015368) #23 ENSPSNG00000015465 NPVF (ENSPSNG00000015564) #24 ENSPSNG00000015619 #26 OSBPL3 (ENSPSNG00000015710) #30 ENSPSNG00000015897 GSDME (ENSPSNG00000015923) #31 PALS2 (ENSPSNG00000016078) #32 NPY (ENSPSNG00000016221) #34 ENSPSNG00000016288 #37 ENSPSNG00000016445 #37 FAM221A (ENSPSNG00000016541) ADAM22 (ENSPSNG00000016901) SRI (ENSPSNG00000018120) STEAP4 (ENSPSNG00000018328) Monodontidae ANCESTRAL SPECIES 12 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000001447.pb.a ENSGT00390000003271 #24 ENSGT00390000009405.b.o.b.a #26 ENSGT00940000155957 #30 ENSGT00940000155196.n.a ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 Beluga whale MODERN SPECIES 72 EVX1 (ENSDLEG00000009229) HOXA13 (ENSDLEG00000009264) #7 HOXA11 (ENSDLEG00000009292) #8 HOXA10 (ENSDLEG00000009312) HOXA9 (ENSDLEG00000009337) #10 HOXA7 (ENSDLEG00000009351) #11 HOXA6 (ENSDLEG00000009363) #12 HOXA5 (ENSDLEG00000009373) #13 HOXA4 (ENSDLEG00000009384) #14 HOXA3 (ENSDLEG00000009412) #15 HOXA2 (ENSDLEG00000009422) #16 HOXA1 (ENSDLEG00000009441) #17 SKAP2 (ENSDLEG00000009464) #19 SNX10 (ENSDLEG00000009511) #20 CBX3 (ENSDLEG00000009530) ##21 HNRNPA2B1 (ENSDLEG00000009544) #22 NFE2L3 (ENSDLEG00000009586) #23 ENSDLEG00000009623 NPVF (ENSDLEG00000009634) #24 ENSDLEG00000009662 #26 OSBPL3 (ENSDLEG00000009692) #30 ENSDLEG00000009794 GSDME (ENSDLEG00000009804) #31 ENSDLEG00000009832 MPP6 (ENSDLEG00000009849) #32 NPY (ENSDLEG00000009897) #34 STK31 (ENSDLEG00000009920) #37 FAM221A (ENSDLEG00000010001) ADAM22 (ENSDLEG00000010449) SRI (ENSDLEG00000015160) STEAP4 (ENSDLEG00000015175) Narwhal MODERN SPECIES 306 EVX1 (ENSMMNG00015006342) HOXA13 (ENSMMNG00015006328) #7 HOXA11 (ENSMMNG00015006318) #8 ENSMMNG00015006310 #9 HOXA9 (ENSMMNG00015006287) #10 HOXA7 (ENSMMNG00015006271) #11 HOXA6 (ENSMMNG00015006261) #12 HOXA5 (ENSMMNG00015006249) #13 HOXA4 (ENSMMNG00015006236) #14 HOXA3 (ENSMMNG00015006227) #15 HOXA2 (ENSMMNG00015006212) #16 HOXA1 (ENSMMNG00015006195) #17 SKAP2 (ENSMMNG00015006170) #19 SNX10 (ENSMMNG00015006146) #20 CBX3 (ENSMMNG00015006116) #21 ENSMMNG00015006029 #22 NFE2L3 (ENSMMNG00015005990) #23 ENSMMNG00015005975 ENSMMNG00015005956 NPVF (ENSMMNG00015005934) #24 ENSMMNG00015005923 #26 ENSMMNG00015005917 OSBPL3 (ENSMMNG00015005858) #30 GSDME (ENSMMNG00015005808) #31 PALS2 (ENSMMNG00015005747) #32 NPY (ENSMMNG00015005716) #34 ENSMMNG00015005679 #37 ENSMMNG00015005655 #37 FAM221A (ENSMMNG00015005604) ADAM22 (ENSMMNG00015005547) SRI (ENSMMNG00015005495) Pecora ANCESTRAL SPECIES 11 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.p.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 ENSGT00940000160479 Percora_a ANCESTRAL SPECIES 11 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.p.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 ENSGT00940000160479 Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 87 EVX1 (ENSMMSG00000008787) HOXA13 (ENSMMSG00000008765) #7 HOXA11 (ENSMMSG00000008748) #8 HOXA10 (ENSMMSG00000008727) HOXA9 (ENSMMSG00000008679) #10 HOXA7 (ENSMMSG00000008650) #11 HOXA6 (ENSMMSG00000008621) #12 HOXA5 (ENSMMSG00000008606) #13 HOXA4 (ENSMMSG00000008591) #14 HOXA3 (ENSMMSG00000008574) #15 HOXA2 (ENSMMSG00000008551) #16 HOXA1 (ENSMMSG00000008512) #17 SKAP2 (ENSMMSG00000008475) #19 SNX10 (ENSMMSG00000008398) #20 CBX3 (ENSMMSG00000008333) #21 ENSMMSG00000008126 #22 NFE2L3 (ENSMMSG00000008071) #23 ENSMMSG00000008040 ##22 NPVF (ENSMMSG00000008017) #24 C7orf31 (ENSMMSG00000007922) #25 ENSMMSG00000007897 #26 ENSMMSG00000007886 OSBPL3 (ENSMMSG00000007737) #30 GSDME (ENSMMSG00000007631) #31 PALS2 (ENSMMSG00000007548) #32 NPY (ENSMMSG00000007524) #34 STK31 (ENSMMSG00000007029) #37 FAM221A (ENSMMSG00000006804) ADAM22 (ENSMMSG00000005953) SRI (ENSMMSG00000005792) STEAP4 (ENSMMSG00000013499) Siberian musk deer MODERN SPECIES 87 FKBP9 (ENSMMSG00000013301) KBTBD2 (ENSMMSG00000013277) AVL9 (ENSMMSG00000013195) LSM5 (ENSMMSG00000013162) PDE1C (ENSMMSG00000013039) PPP1R17 (ENSMMSG00000012998) ITPRID1 (ENSMMSG00000012854) NEUROD6 (ENSMMSG00000012842) ADCYAP1R1 (ENSMMSG00000011609) GHRHR (ENSMMSG00000011527) AQP1 (ENSMMSG00000011496) MINDY4 (ENSMMSG00000011375) ENSMMSG00000011350 CRHR2 (ENSMMSG00000011057) GARS1 (ENSMMSG00000010996) ENSMMSG00000010861 #22 GGCT (ENSMMSG00000010811) NOD1 (ENSMMSG00000010746) ZNRF2 (ENSMMSG00000010692) MTURN (ENSMMSG00000010670) PLEKHA8 (ENSMMSG00000010578) FKBP14 (ENSMMSG00000010546) SCRN1 (ENSMMSG00000010472) WIPF3 (ENSMMSG00000010392) PRR15 (ENSMMSG00000010370) CHN2 (ENSMMSG00000009425) CPVL (ENSMMSG00000009268) TRIL (ENSMMSG00000009241) CREB5 (ENSMMSG00000009091) ENSMMSG00000009066 JAZF1 (ENSMMSG00000009021) Bovidae ANCESTRAL SPECIES 12 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.p.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 ENSGT00940000160479 Bovinae ANCESTRAL SPECIES 8 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00960000190781 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.p.a #26 ENSGT00940000155957 #30 ENSGT00940000154796.C.b.b ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000164601.f ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B American bison DUPLICATION American bison MODERN SPECIES 3216 ENSBBBG00000023700 DYNC1H1 (ENSBBBG00000006196) ENSBBBG00000023788 HSP90AA1 (ENSBBBG00000023932) WDR20 (ENSBBBG00000023985) ENSBBBG00000024008 CINP (ENSBBBG00000024144) TECPR2 (ENSBBBG00000006291) ENSBBBG00000024185 RCOR1 (ENSBBBG00000000286) ENSBBBG00000024266 TRAF3 (ENSBBBG00000008712) CDC42BPB (ENSBBBG00000024454) LBHD2 (ENSBBBG00000024466) ENSBBBG00000006381 ENSBBBG00000024496 #22 EIF5 (ENSBBBG00000024526) MARK3 (ENSBBBG00000007721) ENSBBBG00000006806 CKB (ENSBBBG00000024829) TRMT61A (ENSBBBG00000006541) BAG5 (ENSBBBG00000006546) ENSBBBG00000024856 ENSBBBG00000024861 ENSBBBG00000008050 KLC1 (ENSBBBG00000025259) ENSBBBG00000025291 PPP1R13B (ENSBBBG00000025430) ENSBBBG00000025488 RD3L (ENSBBBG00000011601) TDRD9 (ENSBBBG00000011627) American bison MODERN SPECIES 3278 ENSBBBG00000020482 #7 HOXA11 (ENSBBBG00000020500) #8 ENSBBBG00000020506 #9 ENSBBBG00000005537 #10 HOXA7 (ENSBBBG00000020511) #11 HOXA6 (ENSBBBG00000020515) #12 HOXA5 (ENSBBBG00000020518) #13 ENSBBBG00000020521 #14 HOXA3 (ENSBBBG00000005541) #15 HOXA2 (ENSBBBG00000020536) #16 HOXA1 (ENSBBBG00000020558) #17 ENSBBBG00000005551 SKAP2 (ENSBBBG00000020584) #19 SNX10 (ENSBBBG00000006863) #20 ENSBBBG00000020651 ##21 ENSBBBG00000007053 #22 NFE2L3 (ENSBBBG00000020743) #23 NPVF (ENSBBBG00000020751) #24 C7orf31 (ENSBBBG00000005601) #25 ENSBBBG00000020786 #26 OSBPL3 (ENSBBBG00000021014) #30 ENSBBBG00000021036 GSDME (ENSBBBG00000021137) #31 PALS2 (ENSBBBG00000021173) #32 NPY (ENSBBBG00000021182) #34 STK31 (ENSBBBG00000005696) #37 FAM221A (ENSBBBG00000021312) ENSBBBG00000021325 ADAM22 (ENSBBBG00000021555) SRI (ENSBBBG00000021602) Bos ANCESTRAL SPECIES 8 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00960000190781 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.p.a #26 ENSGT00940000155957 #30 ENSGT00940000154796.C.b.b ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000164601.f ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B Bos_b ANCESTRAL SPECIES 7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00960000190781 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00940000157883.a.b.e.b.e.a.a ENSGT00940000155957 #30 ENSGT00940000154796.C.b.b ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 Hybrid Bos Indicus MODERN SPECIES 23 HOXA11 (ENSBIXG00005015251) #8 HOXA10 (ENSBIXG00005015278) HOXA9 (ENSBIXG00005015312) #10 HOXA7 (ENSBIXG00005015346) #11 HOXA6 (ENSBIXG00005002254) #12 HOXA5 (ENSBIXG00005015377) #13 HOXA4 (ENSBIXG00005015410) #14 HOXA3 (ENSBIXG00005015435) #15 HOXA2 (ENSBIXG00005015454) #16 HOXA1 (ENSBIXG00005015513) #17 ENSBIXG00005007546 SKAP2 (ENSBIXG00005002343) #19 ENSBIXG00005015618 SNX10 (ENSBIXG00005015700) #20 CBX3 (ENSBIXG00005015743) #21 ENSBIXG00005015830 #22 NFE2L3 (ENSBIXG00005015851) #23 NPVF (ENSBIXG00005015893) #24 C7orf31 (ENSBIXG00005015905) #25 ENSBIXG00005015956 OSBPL3 (ENSBIXG00005016040) #30 ENSBIXG00005016073 GSDME (ENSBIXG00005016114) #31 ENSBIXG00005016118 PALS2 (ENSBIXG00005016242) #32 NPY (ENSBIXG00005005722) #34 STK31 (ENSBIXG00005016477) #37 ENSBIXG00005016514 ADAM22 (ENSBIXG00005016837) SRI (ENSBIXG00005016923) ENSBIXG00005007515 Bos_a ANCESTRAL SPECIES 12 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00960000190781 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.p.a #26 ENSGT00940000155957 #30 ENSGT00940000154796.C.b.b ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000164601.f ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B Wild yak MODERN SPECIES 1550 ENSBMUG00000002455 ENSBMUG00000002522 #8 ENSBMUG00000002543 #9 HOXA9 (ENSBMUG00000002568) #10 HOXA7 (ENSBMUG00000002587) #11 HOXA6 (ENSBMUG00000002606) #12 HOXA5 (ENSBMUG00000002631) #13 ENSBMUG00000002645 #14 HOXA3 (ENSBMUG00000002664) #15 HOXA2 (ENSBMUG00000002681) #16 HOXA1 (ENSBMUG00000002735) #17 ENSBMUG00000002753 SKAP2 (ENSBMUG00000002819) #19 SNX10 (ENSBMUG00000002905) #20 CBX3 (ENSBMUG00000002936) #21 ENSBMUG00000003049 #22 NFE2L3 (ENSBMUG00000003080) #23 Domestic yak MODERN SPECIES 23 HOXA13 (ENSBGRG00000002092) #7 HOXA11 (ENSBGRG00000002077) #8 hoxA10 (ENSBGRG00000002072) #9 HOXA9 (ENSBGRG00000002058) #10 HOXA7 (ENSBGRG00000002048) #11 HOXA6 (ENSBGRG00000002039) #12 HOXA5 (ENSBGRG00000002031) #13 HOXA4 (ENSBGRG00000002016) #14 HOXA3 (ENSBGRG00000001999) #15 HOXA2 (ENSBGRG00000001989) #16 HOXA1 (ENSBGRG00000001963) #17 ENSBGRG00000001956 SKAP2 (ENSBGRG00000001745) #19 SNX10 (ENSBGRG00000001644) #20 ENSBGRG00000001597 ##21 ENSBGRG00000001515 #22 NFE2L3 (ENSBGRG00000001498) #23 NPVF (ENSBGRG00000001474) #24 C7orf31 (ENSBGRG00000001447) #25 ENSBGRG00000001429 OSBPL3 (ENSBGRG00000001354) #30 ENSBGRG00000001326 GSDME (ENSBGRG00000001265) #31 PALS2 (ENSBGRG00000001147) #32 NPY (ENSBGRG00000001085) #34 STK31 (ENSBGRG00000000834) #37 FAM221A (ENSBGRG00000000639) ENSBGRG00000000609 ADAM22 (ENSBGRG00000000282) SRI (ENSBGRG00000021029) STEAP4 (ENSBGRG00000020969) Caprinae ANCESTRAL SPECIES 10 ENSGT00700000106050 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00940000157883.a.b.e.b.e.a.b.a ENSGT00940000157883.a.b.e.b.e.a.a ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000156889 ENSGT00940000153979.B ENSGT00390000008042.B ENSGT00390000005565 Rambouillet Sheep MODERN SPECIES 20 HOXA13 (ENSOARG00020000130) #7 ENSOARG00020000154 HOXA11 (ENSOARG00020000170) #8 ENSOARG00020000180 #9 HOXA9 (ENSOARG00020000214) #10 HOXA7 (ENSOARG00020000223) #11 HOXA6 (ENSOARG00020000238) #12 HOXA5 (ENSOARG00020000251) #13 HOXA4 (ENSOARG00020000267) #14 HOXA3 (ENSOARG00020000280) #15 HOXA2 (ENSOARG00020000291) #16 HOXA1 (ENSOARG00020000312) #17 SKAP2 (ENSOARG00020000333) #19 SNX10 (ENSOARG00020000354) #20 ENSOARG00020000374 #21 HNRNPA2B1 (ENSOARG00020000397) #22 NFE2L3 (ENSOARG00020000455) #23 ENSOARG00020000488 NPVF (ENSOARG00020000502) #24 CYCS (ENSOARG00020000536) OSBPL3 (ENSOARG00020000582) #30 GSDME (ENSOARG00020000709) #31 PALS2 (ENSOARG00020000732) #32 NPY (ENSOARG00020000795) #34 STK31 (ENSOARG00020000834) #37 FAM221A (ENSOARG00020000940) ADAM22 (ENSOARG00020001114) SRI (ENSOARG00020001780) STEAP4 (ENSOARG00020001847) TEX47 (ENSOARG00020001862) STEAP1 (ENSOARG00020001900) Goat MODERN SPECIES 23 EVX1 (ENSCHIG00000015016) HOXA13 (ENSCHIG00000008199) #7 HOXA11 (ENSCHIG00000020568) #8 HOXA10 (ENSCHIG00000014836) HOXA9 (ENSCHIG00000004716) #10 HOXA7 (ENSCHIG00000021947) #11 HOXA6 (ENSCHIG00000015611) #12 HOXA5 (ENSCHIG00000005534) #13 HOXA4 (ENSCHIG00000019699) #14 HOXA3 (ENSCHIG00000014179) #15 HOXA2 (ENSCHIG00000024428) #16 HOXA1 (ENSCHIG00000023757) #17 SKAP2 (ENSCHIG00000011784) #19 SNX10 (ENSCHIG00000021478) #20 CBX3 (ENSCHIG00000010019) #21 ENSCHIG00000022444 #22 NFE2L3 (ENSCHIG00000009777) #23 NPVF (ENSCHIG00000021793) #24 C7orf31 (ENSCHIG00000012874) #25 ENSCHIG00000025853 OSBPL3 (ENSCHIG00000017106) #30 GSDME (ENSCHIG00000026791) #31 PALS2 (ENSCHIG00000018994) #32 NPY (ENSCHIG00000007443) #34 STK31 (ENSCHIG00000018707) #37 FAM221A (ENSCHIG00000010375) ADAM22 (ENSCHIG00000021489) SRI (ENSCHIG00000015421) STEAP4 (ENSCHIG00000008525) TEX47 (ENSCHIG00000008630) ZNF804B (ENSCHIG00000015623) Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 8 USP53 (ENSCHYG00000019385) MYOZ2 (ENSCHYG00000019531) SYNPO2 (ENSCHYG00000019608) SEC24D (ENSCHYG00000019930) METTL14 (ENSCHYG00000020653) ENSCHYG00000020777 PRSS12 (ENSCHYG00000020827) NDST3 (ENSCHYG00000021158) TRAM1L1 (ENSCHYG00000021312) ENSCHYG00000021359 NDST4 (ENSCHYG00000021418) UGT8 (ENSCHYG00000021551) ENSCHYG00000021625 ENSCHYG00000021651 ARSJ (ENSCHYG00000021686) ENSCHYG00000021709 #22 CAMK2D (ENSCHYG00000021900) ENSCHYG00000013660 LARP7 (ENSCHYG00000016420) ZGRF1 (ENSCHYG00000016563) NEUROG2 (ENSCHYG00000016884) ALPK1 (ENSCHYG00000016924) TIFA (ENSCHYG00000017159) AP1AR (ENSCHYG00000017199) FAM241A (ENSCHYG00000017369) ENSCHYG00000017401 ENSCHYG00000017419 PITX2 (ENSCHYG00000017532) ENPEP (ENSCHYG00000017750) ELOVL6 (ENSCHYG00000018333) ENSCHYG00000018367 Yarkand deer MODERN SPECIES 9 EVX1 (ENSCHYG00000007735) HOXA13 (ENSCHYG00000007767) #7 HOXA11 (ENSCHYG00000007789) #8 ENSCHYG00000007809 #9 HOXA9 (ENSCHYG00000007842) #10 HOXA7 (ENSCHYG00000007865) #11 HOXA6 (ENSCHYG00000007892) #12 HOXA5 (ENSCHYG00000007908) #13 HOXA4 (ENSCHYG00000007930) #14 HOXA3 (ENSCHYG00000007949) #15 HOXA2 (ENSCHYG00000007974) #16 HOXA1 (ENSCHYG00000007989) #17 SKAP2 (ENSCHYG00000008025) #19 SNX10 (ENSCHYG00000008200) #20 ENSCHYG00000008298 ##21 ENSCHYG00000008354 #22 NFE2L3 (ENSCHYG00000008565) #23 NPVF (ENSCHYG00000008663) #24 C7orf31 (ENSCHYG00000008694) #25 ENSCHYG00000008826 #26 OSBPL3 (ENSCHYG00000008908) #30 GSDME (ENSCHYG00000009207) #31 PALS2 (ENSCHYG00000009307) #32 ENSCHYG00000009467 #34 STK31 (ENSCHYG00000009576) #37 FAM221A (ENSCHYG00000010664) ADAM22 (ENSCHYG00000010910) SRI (ENSCHYG00000012106) STEAP4 (ENSCHYG00000012322) ZNF804B (ENSCHYG00000012375) TEX47 (ENSCHYG00000012413) Suina ANCESTRAL SPECIES 19 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.f ##21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.q.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000157781 ENSGT00390000014376 ENSGT00940000161393 ENSGT00390000000706 ENSGT00530000063186.b.a Pig MODERN SPECIES 9 HIBADH (ENSSSCG00000016695) EVX1 (ENSSSCG00000016696) HOXA13 (ENSSSCG00000062559) #7 HOXA11 (ENSSSCG00000016698) #8 HOXA10 (ENSSSCG00000021204) HOXA9 (ENSSSCG00000028997) #10 HOXA7 (ENSSSCG00000016701) #11 HOXA5 (ENSSSCG00000016703) #13 ENSSSCG00000016704 HOXA3 (ENSSSCG00000016705) #15 HOXA2 (ENSSSCG00000016706) #16 HOXA1 (ENSSSCG00000016707) #17 SKAP2 (ENSSSCG00000016708) #19 SNX10 (ENSSSCG00000037598) #20 CBX3 (ENSSSCG00000016711) ##21 ENSSSCG00000036350 #22 NFE2L3 (ENSSSCG00000026894) #23 NPVF (ENSSSCG00000036611) #24 C7orf31 (ENSSSCG00000033313) #25 ENSSSCG00000034622 CYCS (ENSSSCG00000016714) OSBPL3 (ENSSSCG00000016715) #30 GSDME (ENSSSCG00000016716) #31 PALS2 (ENSSSCG00000016717) #32 NPY (ENSSSCG00000016718) #34 ENSSSCG00000037148 ENSSSCG00000016719 #37 ENSSSCG00000056164 #37 FAM221A (ENSSSCG00000038792) UPP1 (ENSSSCG00000030388) C7orf57 (ENSSSCG00000033266) Chacoan peccary MODERN SPECIES 77 EVX1 (ENSCWAG00000009983) HOXA13 (ENSCWAG00000010027) #7 HOXA11 (ENSCWAG00000010061) #8 HOXA10 (ENSCWAG00000010088) HOXA9 (ENSCWAG00000000059) #10 HOXA7 (ENSCWAG00000000085) #11 HOXA6 (ENSCWAG00000000104) #12 HOXA5 (ENSCWAG00000000120) #13 ENSCWAG00000000132 #14 HOXA3 (ENSCWAG00000000149) #15 HOXA2 (ENSCWAG00000000162) #16 HOXA1 (ENSCWAG00000000172) #17 SKAP2 (ENSCWAG00000000198) #19 SNX10 (ENSCWAG00000000244) #20 ENSCWAG00000000333 ##21 HNRNPA2B1 (ENSCWAG00000000378) #22 NFE2L3 (ENSCWAG00000000464) #23 NPVF (ENSCWAG00000000489) #24 C7orf31 (ENSCWAG00000000512) #25 ENSCWAG00000000536 #26 OSBPL3 (ENSCWAG00000000578) #30 ENSCWAG00000000638 GSDME (ENSCWAG00000000655) #31 PALS2 (ENSCWAG00000000694) #32 NPY (ENSCWAG00000000744) #34 STK31 (ENSCWAG00000000802) #37 FAM221A (ENSCWAG00000001136) UPP1 (ENSCWAG00000001201) C7orf57 (ENSCWAG00000001234) SUN3 (ENSCWAG00000001274) HUS1 (ENSCWAG00000001301) Laurasiatheria_b ANCESTRAL SPECIES 14 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Laurasiatheria_c ANCESTRAL SPECIES 13 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Chiroptera ANCESTRAL SPECIES 24 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00390000016010 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Megabat MODERN SPECIES 1056 SNX10 (ENSPVAG00000006298) #20 CBX3 (ENSPVAG00000006297) ##21 HNRNPA2B1 (ENSPVAG00000006296) #22 NFE2L3 (ENSPVAG00000006295) #23 Microchiroptera ANCESTRAL SPECIES 24 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B Microbat MODERN SPECIES 989 EVX1 (ENSMLUG00000007499) HOXA13 (ENSMLUG00000008332) #7 HOXA11 (ENSMLUG00000008300) #8 ENSMLUG00000027272 #9 HOXA7 (ENSMLUG00000008289) #11 HOXA6 (ENSMLUG00000014517) #12 HOXA5 (ENSMLUG00000028593) #13 ENSMLUG00000022220 ##14 HOXA3 (ENSMLUG00000014502) #15 HOXA2 (ENSMLUG00000014499) #16 HOXA1 (ENSMLUG00000014496) #17 ENSMLUG00000023915 #19 ENSMLUG00000014485 #19 SNX10 (ENSMLUG00000000285) #20 CBX3 (ENSMLUG00000007591) #21 ENSMLUG00000007578 #22 NFE2L3 (ENSMLUG00000007549) #23 ENSMLUG00000023699 C7orf31 (ENSMLUG00000016521) #25 ENSMLUG00000009521 #26 OSBPL3 (ENSMLUG00000011152) #30 GSDME (ENSMLUG00000011133) #31 PALS2 (ENSMLUG00000006787) #32 NPY (ENSMLUG00000004126) #34 STK31 (ENSMLUG00000010598) #37 FAM221A (ENSMLUG00000013979) CCDC126 (ENSMLUG00000010591) TRA2A (ENSMLUG00000013972) IGF2BP3 (ENSMLUG00000008451) MALSU1 (ENSMLUG00000027691) GPNMB (ENSMLUG00000008423) Greater horseshoe bat MODERN SPECIES 12 HOXA13 (ENSRFEG00010007129) #7 HOXA11 (ENSRFEG00010007153) #8 ENSRFEG00010007175 #9 HOXA9 (ENSRFEG00010007211) #10 HOXA7 (ENSRFEG00010007246) #11 HOXA6 (ENSRFEG00010007277) #12 HOXA5 (ENSRFEG00010007299) #13 HOXA4 (ENSRFEG00010007327) #14 HOXA3 (ENSRFEG00010007370) #15 HOXA2 (ENSRFEG00010007382) #16 HOXA1 (ENSRFEG00010007395) #17 SKAP2 (ENSRFEG00010007437) #19 ENSRFEG00010007479 SNX10 (ENSRFEG00010007496) #20 CBX3 (ENSRFEG00010007556) #21 HNRNPA2B1 (ENSRFEG00010007611) #22 NFE2L3 (ENSRFEG00010007944) #23 ENSRFEG00010007962 NPVF (ENSRFEG00010007973) #24 C7orf31 (ENSRFEG00010008020) #25 ENSRFEG00010008111 #26 OSBPL3 (ENSRFEG00010008157) #30 GSDME (ENSRFEG00010008316) #31 PALS2 (ENSRFEG00010008380) #32 ENSRFEG00010008487 ENSRFEG00010008531 NPY (ENSRFEG00010008575) #34 STK31 (ENSRFEG00010008639) #37 FAM221A (ENSRFEG00010009279) CCDC126 (ENSRFEG00010009346) TRA2A (ENSRFEG00010009374) Equus ANCESTRAL SPECIES 13 ENSGT00940000155255 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT01000000214669 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00940000157883.a.b.e.b ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Donkey MODERN SPECIES ENSEASG00005000084 HIBADH (ENSEASG00005000063) EVX1 (ENSEASG00005000033) HOXA13 (ENSEASG00005022194) #7 HOXA11 (ENSEASG00005022180) #8 HOXA10 (ENSEASG00005022176) ENSEASG00005022172 #10 ENSEASG00005028567 #11 HOXA5 (ENSEASG00005034554) #13 HOXA3 (ENSEASG00005035791) #15 HOXA2 (ENSEASG00005033684) #16 HOXA1 (ENSEASG00005030120) #17 SKAP2 (ENSEASG00005022133) #19 SNX10 (ENSEASG00005022123) #20 CBX3 (ENSEASG00005022119) #21 HNRNPA2B1 (ENSEASG00005022108) #22 NFE2L3 (ENSEASG00005022104) #23 ENSEASG00005022095 NPVF (ENSEASG00005022093) #24 C7orf31 (ENSEASG00005022075) #25 CYCS (ENSEASG00005038171) OSBPL3 (ENSEASG00005022065) #30 GSDME (ENSEASG00005022048) #31 PALS2 (ENSEASG00005022041) #32 NPY (ENSEASG00005025389) #34 STK31 (ENSEASG00005022020) #37 FAM221A (ENSEASG00005022011) CCDC126 (ENSEASG00005022005) TRA2A (ENSEASG00005022002) IGF2BP3 (ENSEASG00005021998) MALSU1 (ENSEASG00005021994) Horse MODERN SPECIES 25 ENSECAG00000054721 HIBADH (ENSECAG00000016863) EVX1 (ENSECAG00000014337) HOXA13 (ENSECAG00000038185) #7 HOXA11 (ENSECAG00000058817) #8 HOXA10 (ENSECAG00000012577) HOXA9 (ENSECAG00000054482) #10 HOXA7 (ENSECAG00000054772) #11 HOXA6 (ENSECAG00000000575) #12 HOXA5 (ENSECAG00000000461) #13 HOXA3 (ENSECAG00000022055) #15 HOXA2 (ENSECAG00000000451) #16 HOXA1 (ENSECAG00000021767) #17 SKAP2 (ENSECAG00000020343) #19 SNX10 (ENSECAG00000013745) #20 HNRNPA2B1 (ENSECAG00000000782) #22 NFE2L3 (ENSECAG00000021973) #23 ENSECAG00000058694 NPVF (ENSECAG00000021063) #24 C4H7orf31 (ENSECAG00000016478) #25 CYCS (ENSECAG00000014330) OSBPL3 (ENSECAG00000023989) #30 GSDME (ENSECAG00000021145) #31 PALS2 (ENSECAG00000009638) #32 NPY (ENSECAG00000008726) #34 STK31 (ENSECAG00000021842) #37 FAM221A (ENSECAG00000021316) ENSECAG00000055994 ##28 CCDC126 (ENSECAG00000019742) TRA2A (ENSECAG00000011508) ENSECAG00000060279 Carnivora ANCESTRAL SPECIES 15 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Felidae ANCESTRAL SPECIES 13 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.n.a.a.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B Cat MODERN SPECIES 1 EVX1 (ENSFCAG00000023523) HOXA13 (ENSFCAG00000041347) #7 HOXA11 (ENSFCAG00000007945) #8 HOXA10 (ENSFCAG00000025359) HOXA9 (ENSFCAG00000036304) #10 HOXA7 (ENSFCAG00000022150) #11 HOXA6 (ENSFCAG00000034134) #12 HOXA5 (ENSFCAG00000045684) #13 HOXA4 (ENSFCAG00000035258) #14 HOXA3 (ENSFCAG00000028952) #15 HOXA2 (ENSFCAG00000007939) #16 HOXA1 (ENSFCAG00000007937) #17 SKAP2 (ENSFCAG00000025910) #19 SNX10 (ENSFCAG00000041224) #20 ENSFCAG00000034520 ##21 HNRNPA2B1 (ENSFCAG00000027765) #22 NFE2L3 (ENSFCAG00000031293) #23 NPVF (ENSFCAG00000008467) #24 CA2H7orf31 (ENSFCAG00000023175) #25 ENSFCAG00000036552 #26 ENSFCAG00000034184 OSBPL3 (ENSFCAG00000010032) #30 GSDME (ENSFCAG00000014873) #31 PALS2 (ENSFCAG00000014869) #32 NPY (ENSFCAG00000010966) #34 STK31 (ENSFCAG00000028451) #37 FAM221A (ENSFCAG00000028026) CCDC126 (ENSFCAG00000032411) ENSFCAG00000049378 TRA2A (ENSFCAG00000005361) IGF2BP3 (ENSFCAG00000030786) Panthera ANCESTRAL SPECIES 1 ENSGT00940000159854 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.n.a.a.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT01030000235027 ENSGT00940000154957.B ENSGT00390000015035 Tiger MODERN SPECIES 97 TAX1BP1 (ENSPTIG00000021227) HIBADH (ENSPTIG00000010859) ENSPTIG00000011221 ENSPTIG00000011682 #7 HOXA11 (ENSPTIG00000011979) #8 ENSPTIG00000012506 #9 HOXA9 (ENSPTIG00000013356) #10 HOXA7 (ENSPTIG00000013517) #11 HOXA6 (ENSPTIG00000014100) #12 ENSPTIG00000014314 #14 HOXA2 (ENSPTIG00000014716) #16 HOXA1 (ENSPTIG00000015859) #17 SKAP2 (ENSPTIG00000016077) #19 SNX10 (ENSPTIG00000017994) #20 CBX3 (ENSPTIG00000019324) #21 ENSPTIG00000019833 #22 NFE2L3 (ENSPTIG00000000753) #23 Panthera_a ANCESTRAL SPECIES ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b.n.a.a.a #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 ENSGT00950000183188.B leopard MODERN SPECIES 9 EVX1 (ENSPPRG00000007045) HOXA13 (ENSPPRG00000007567) #7 HOXA11 (ENSPPRG00000008199) #8 HOXA10 (ENSPPRG00000009005) HOXA9 (ENSPPRG00000009245) #10 HOXA7 (ENSPPRG00000009429) #11 HOXA6 (ENSPPRG00000009699) #12 HOXA5 (ENSPPRG00000009947) #13 HOXA4 (ENSPPRG00000010242) #14 HOXA3 (ENSPPRG00000010844) #15 HOXA2 (ENSPPRG00000011302) #16 HOXA1 (ENSPPRG00000011916) #17 SKAP2 (ENSPPRG00000012204) #19 SNX10 (ENSPPRG00000014532) #20 CBX3 (ENSPPRG00000016142) #21 HNRNPA2B1 (ENSPPRG00000019212) #22 NFE2L3 (ENSPPRG00000021279) #23 ENSPPRG00000022533 NPVF (ENSPPRG00000023448) #24 C7orf31 (ENSPPRG00000023165) #25 ENSPPRG00000000193 #26 OSBPL3 (ENSPPRG00000006524) #30 GSDME (ENSPPRG00000008422) #31 PALS2 (ENSPPRG00000008805) #32 NPY (ENSPPRG00000009455) #34 ENSPPRG00000009566 STK31 (ENSPPRG00000012594) #37 FAM221A (ENSPPRG00000013560) CCDC126 (ENSPPRG00000014486) TRA2A (ENSPPRG00000015216) ENSPPRG00000020147 lion MODERN SPECIES 2 EVX1 (ENSPLOG00000007612) HOXA13 (ENSPLOG00000007596) #7 HOXA11 (ENSPLOG00000007576) #8 ENSPLOG00000007559 #9 HOXA9 (ENSPLOG00000007540) #10 HOXA7 (ENSPLOG00000007529) #11 HOXA6 (ENSPLOG00000007517) #12 HOXA5 (ENSPLOG00000007500) #13 HOXA4 (ENSPLOG00000007478) #14 HOXA3 (ENSPLOG00000007461) #15 HOXA2 (ENSPLOG00000007449) #16 HOXA1 (ENSPLOG00000007430) #17 SKAP2 (ENSPLOG00000007389) #19 SNX10 (ENSPLOG00000007289) #20 CBX3 (ENSPLOG00000007256) #21 ENSPLOG00000007132 #22 NFE2L3 (ENSPLOG00000007066) #23 NPVF (ENSPLOG00000007044) #24 C7orf31 (ENSPLOG00000007012) #25 ENSPLOG00000006975 #26 OSBPL3 (ENSPLOG00000006925) #30 GSDME (ENSPLOG00000006850) #31 PALS2 (ENSPLOG00000006803) #32 NPY (ENSPLOG00000006774) #34 STK31 (ENSPLOG00000006529) #37 FAM221A (ENSPLOG00000006376) CCDC126 (ENSPLOG00000006333) TRA2A (ENSPLOG00000006313) IGF2BP3 (ENSPLOG00000006261) MALSU1 (ENSPLOG00000006242) GPNMB (ENSPLOG00000006176) Caniformia ANCESTRAL SPECIES 11 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000172584.c.a ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT00940000154957.B Caniformia_b ANCESTRAL SPECIES 9 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.a ##21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000172584.c.a ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT00940000154957.B Mustelinae ANCESTRAL SPECIES 9 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.a ##21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000172584.c.a ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Ferret MODERN SPECIES 251 HIBADH (ENSMPUG00000004863) EVX1 (ENSMPUG00000004859) HOXA13 (ENSMPUG00000004851) #7 HOXA11 (ENSMPUG00000004822) #8 HOXA10 (ENSMPUG00000004815) HOXA9 (ENSMPUG00000004809) #10 HOXA7 (ENSMPUG00000004789) #11 HOXA6 (ENSMPUG00000004779) #12 HOXA5 (ENSMPUG00000004770) #13 HOXA4 (ENSMPUG00000004732) #14 HOXA3 (ENSMPUG00000004727) #15 HOXA2 (ENSMPUG00000004721) #16 HOXA1 (ENSMPUG00000004711) #17 SKAP2 (ENSMPUG00000004697) #19 SNX10 (ENSMPUG00000004686) #20 ENSMPUG00000004554 #22 NFE2L3 (ENSMPUG00000004526) #23 ENSMPUG00000004517 NPVF (ENSMPUG00000004494) #24 C7orf31 (ENSMPUG00000004447) #25 American mink MODERN SPECIES 24 EVX1 (ENSNVIG00000012041) HOXA13 (ENSNVIG00000012062) #7 HOXA11 (ENSNVIG00000012100) #8 ENSNVIG00000012110 #9 HOXA9 (ENSNVIG00000012124) #10 HOXA7 (ENSNVIG00000012126) #11 HOXA6 (ENSNVIG00000012136) #12 HOXA5 (ENSNVIG00000012142) #13 HOXA4 (ENSNVIG00000012149) #14 HOXA3 (ENSNVIG00000012162) #15 HOXA2 (ENSNVIG00000012184) #16 HOXA1 (ENSNVIG00000012214) #17 SKAP2 (ENSNVIG00000012244) #19 SNX10 (ENSNVIG00000012303) #20 ENSNVIG00000012362 ##21 HNRNPA2B1 (ENSNVIG00000012375) #22 NFE2L3 (ENSNVIG00000012449) #23 NPVF (ENSNVIG00000012461) #24 C7orf31 (ENSNVIG00000012476) #25 CYCS (ENSNVIG00000012505) #26 OSBPL3 (ENSNVIG00000012516) #30 GSDME (ENSNVIG00000012676) #31 PALS2 (ENSNVIG00000012778) #32 NPY (ENSNVIG00000012797) #34 STK31 (ENSNVIG00000012817) #37 FAM221A (ENSNVIG00000012920) ENSNVIG00000012983 CC126 (ENSNVIG00000012995) TRA2A (ENSNVIG00000013005) ENSNVIG00000013044 IGF2BP3 (ENSNVIG00000013056) Ursidae ANCESTRAL SPECIES 12 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000153305.c.e.a ##21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000172584.c.a ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT00940000154957.B Ursus ANCESTRAL SPECIES 31 ENSGT00940000158311 #8 ENSGT00940000163268 #9 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00940000154191.i.a ENSGT00390000017856.a #19 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000153305.c.e.a ##21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000153470.a.a.a.b ENSGT00910000147494 ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 American black bear MODERN SPECIES 2042 ENSUAMG00000025629 ##21 HNRNPA2B1 (ENSUAMG00000025628) #22 NFE2L3 (ENSUAMG00000025627) #23 Polar bear MODERN SPECIES 133 JAZF1 (ENSUMAG00000001899) ENSUMAG00000001876 ENSUMAG00000001866 HIBADH (ENSUMAG00000001860) ENSUMAG00000001853 ENSUMAG00000001814 #8 ENSUMAG00000001810 #9 HOXA9 (ENSUMAG00000001801) #10 HOXA6 (ENSUMAG00000001790) #12 ENSUMAG00000001784 #14 HOXA1 (ENSUMAG00000001758) #17 ENSUMAG00000001750 SKAP2 (ENSUMAG00000001740) #19 SNX10 (ENSUMAG00000001732) #20 CBX3 (ENSUMAG00000001725) #21 HNRNPA2B1 (ENSUMAG00000001699) #22 ENSUMAG00000001694 #23 NPVF (ENSUMAG00000001665) #24 C7orf31 (ENSUMAG00000001572) #25 CYCS (ENSUMAG00000001559) #26 OSBPL3 (ENSUMAG00000001527) #30 GSDME (ENSUMAG00000001516) #31 PALS2 (ENSUMAG00000001507) #32 NPY (ENSUMAG00000001496) #34 STK31 (ENSUMAG00000001224) #37 FAM221A (ENSUMAG00000001201) ENSUMAG00000001194 CCDC126 (ENSUMAG00000001190) ENSUMAG00000001188 TRA2A (ENSUMAG00000001181) IGF2BP3 (ENSUMAG00000000428) Giant Panda MODERN SPECIES ENSAMEG00000031450 HOXA13 (ENSAMEG00000024587) #7 HOXA11 (ENSAMEG00000027072) #8 HOXA10 (ENSAMEG00000031295) HOXA9 (ENSAMEG00000005885) #10 HOXA7 (ENSAMEG00000005891) #11 HOXA6 (ENSAMEG00000005892) #12 HOXA5 (ENSAMEG00000024900) #13 ENSAMEG00000005902 #14 HOXA3 (ENSAMEG00000005904) #15 HOXA2 (ENSAMEG00000005913) #16 HOXA1 (ENSAMEG00000005924) #17 SKAP2 (ENSAMEG00000005928) #19 SNX10 (ENSAMEG00000005948) #20 ENSAMEG00000005969 ##21 ENSAMEG00000005983 #22 NFE2L3 (ENSAMEG00000006017) #23 NPVF (ENSAMEG00000006024) #24 C7orf31 (ENSAMEG00000006032) #25 ENSAMEG00000025231 CYCS (ENSAMEG00000006039) #26 OSBPL3 (ENSAMEG00000006045) #30 GSDME (ENSAMEG00000006101) #31 PALS2 (ENSAMEG00000006125) #32 NPY (ENSAMEG00000006179) #34 ENSAMEG00000025096 #37 ENSAMEG00000009006 #37 FAM221A (ENSAMEG00000008998) ENSAMEG00000026042 CCDC126 (ENSAMEG00000025403) TRA2A (ENSAMEG00000003501) Canidae ANCESTRAL SPECIES 22 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000172584.c.a ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Red fox MODERN SPECIES 12 ENSVVUG00000024762 HOXA13 (ENSVVUG00000024771) #7 HOXA11 (ENSVVUG00000024785) #8 HOXA10 (ENSVVUG00000024786) HOXA9 (ENSVVUG00000024790) #10 HOXA7 (ENSVVUG00000024792) #11 HOXA6 (ENSVVUG00000024793) #12 HOXA5 (ENSVVUG00000024796) #13 ENSVVUG00000024797 #14 HOXA3 (ENSVVUG00000024799) #15 HOXA2 (ENSVVUG00000024801) #16 HOXA1 (ENSVVUG00000024810) #17 SKAP2 (ENSVVUG00000024816) #19 SNX10 (ENSVVUG00000000134) #20 CBX3 (ENSVVUG00000000259) #21 HNRNPA2B1 (ENSVVUG00000000484) #22 NFE2L3 (ENSVVUG00000000512) #23 NPVF (ENSVVUG00000000561) #24 CUNH7orf31 (ENSVVUG00000000577) #25 CYCS (ENSVVUG00000000599) #26 OSBPL3 (ENSVVUG00000000677) #30 GSDME (ENSVVUG00000000725) #31 MPP6 (ENSVVUG00000000752) #32 ENSVVUG00000000829 #34 STK31 (ENSVVUG00000000857) #37 FAM221A (ENSVVUG00000000974) CCDC126 (ENSVVUG00000001003) TRA2A (ENSVVUG00000001045) IGF2BP3 (ENSVVUG00000001063) GPNMB (ENSVVUG00000001105) KLHL7 (ENSVVUG00000001128) Canis_lupus ANCESTRAL SPECIES 24 ENSGT00940000162322 #7 ENSGT00940000158311 #8 ENSGT00940000162440 ENSGT00940000161864 #10 ENSGT00940000161013 #11 ENSGT00940000161585 #12 ENSGT00940000159894 #13 ENSGT00940000158988.a.a #14 ENSGT00940000159522 #15 ENSGT00940000162533 #16 ENSGT00940000157315 #17 ENSGT00390000017856.a #19 ENSGT00570000080653 ENSGT00940000156007 #20 ENSGT00940000153305.c.e.b #21 ENSGT00940000154431.e.b #22 ENSGT00950000182892.a.b.b #23 ENSGT00390000003271 #24 ENSGT00390000015236 #25 ENSGT00390000009405.b #26 ENSGT00940000155957 #30 ENSGT00940000155880 #31 ENSGT00940000158500 #32 ENSGT00940000156475 #34 ENSGT00390000007287 #37 ENSGT00770000120611.B ENSGT00940000172584.c.a ENSGT00940000153470.a.a.a.b ENSGT00940000157167 ENSGT00940000154957.B ENSGT00390000015035 Dog MODERN SPECIES 5 HOXA13 (ENSCAFG00845016263) #7 HOXA11 (ENSCAFG00845016202) #8 HOXA10 (ENSCAFG00845016148) HOXA9 (ENSCAFG00845011412) #10 HOXA7 (ENSCAFG00845011385) #11 HOXA6 (ENSCAFG00845011371) #12 HOXA5 (ENSCAFG00845011359) #13 HOXA4 (ENSCAFG00845011344) #14 HOXA3 (ENSCAFG00845011325) #15 HOXA2 (ENSCAFG00845011307) #16 HOXA1 (ENSCAFG00845011289) #17 SKAP2 (ENSCAFG00845011216) #19 ENSCAFG00845011197 SNX10 (ENSCAFG00845011117) #20 CBX3 (ENSCAFG00845011066) #21 HNRNPA2B1 (ENSCAFG00845010976) #22 NFE2L3 (ENSCAFG00845010931) #23 ENSCAFG00845010833 NPVF (ENSCAFG00845010780) #24 C14H7orf31 (ENSCAFG00845010734) #25 CYCS (ENSCAFG00845010713) #26 OSBPL3 (ENSCAFG00845010396) #30 GSDME (ENSCAFG00845010323) #31 MPP6 (ENSCAFG00845010118) #32 NPY (ENSCAFG00845010065) #34 STK31 (ENSCAFG00845009751) #37 CCDC126 (ENSCAFG00845009637) TRA2A (ENSCAFG00845009542) IGF2BP3 (ENSCAFG00845009383) MALSU1 (ENSCAFG00845009341) ENSCAFG00845009315 Dingo MODERN SPECIES 288 HOXA13 (ENSCAFG00020003636) #7 HOXA11 (ENSCAFG00020003610) #8 HOXA10 (ENSCAFG00020003608) HOXA9 (ENSCAFG00020003604) #10 HOXA7 (ENSCAFG00020003603) #11 HOXA6 (ENSCAFG00020003596) #12 HOXA5 (ENSCAFG00020003593) #13 HOXA4 (ENSCAFG00020003583) #14 HOXA3 (ENSCAFG00020003578) #15 HOXA2 (ENSCAFG00020003576) #16 HOXA1 (ENSCAFG00020003564) #17 ENSCAFG00020003544 SKAP2 (ENSCAFG00020003533) #19 SNX10 (ENSCAFG00020003504) #20 CBX3 (ENSCAFG00020003494) #21 HNRNPA2B1 (ENSCAFG00020003488) #22 NFE2L3 (ENSCAFG00020003483) #23 NPVF (ENSCAFG00020003466) #24 C7orf31 (ENSCAFG00020003415) #25 CYCS (ENSCAFG00020003401) #26 OSBPL3 (ENSCAFG00020003002) #30 GSDME (ENSCAFG00020002948) #31 PALS2 (ENSCAFG00020002914) #32 ENSCAFG00020002904 #34 STK31 (ENSCAFG00020002807) #37 FAM221A (ENSCAFG00020002776) ENSCAFG00020002771 CCDC126 (ENSCAFG00020002769) TRA2A (ENSCAFG00020002745) IGF2BP3 (ENSCAFG00020002709) MALSU1 (ENSCAFG00020002703)