Rodentia ANCESTRAL SPECIES 9 ENSGT00940000162569.b ENSGT00390000013287 ENSGT00940000153241.A ENSGT01030000234519.e.a.a.a.a.b ENSGT01030000234519.e.a.a.a.a.a ENSGT00940000159488 ENSGT00940000158577 #12 ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.a.a ENSGT00940000155211 ENSGT00390000016390 ENSGT00940000159011 ENSGT00940000161328 Rodentia_B ANCESTRAL SPECIES 6 ENSGT00940000162569.b ENSGT00390000013287 ENSGT00940000153241.A ENSGT01030000234519.e.a.a.a.a.b ENSGT01030000234519.e.a.a.a.a.a ENSGT00940000159488 ENSGT00940000158577 #12 ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.a.a ENSGT00940000155211 ENSGT00390000016390 ENSGT00940000159011 ENSGT00940000161328 Kangaroo rat MODERN SPECIES 456 Frmd3 (ENSDORG00000000390) #12 Idnk (ENSDORG00000008263) #13 Ubqln1 (ENSDORG00000015266) #14 Gkap1 (ENSDORG00000026066) #15 Kif27 (ENSDORG00000011169) #16 2210016F16Rik (ENSDORG00000016023) #17 ENSDORG00000016024 #18 Rmi1 (ENSDORG00000028852) #19 Slc28a3 (ENSDORG00000008007) #20 ENSDORG00000024890 #21 Ntrk2 (ENSDORG00000007365) #22 ENSDORG00000024497 #23 Agtpbp1 (ENSDORG00000011166) #24 Naa35 (ENSDORG00000001956) #25 ENSDORG00000001970 #26 ENSDORG00000008588 #27 ENSDORG00000029969 #28 Myomorpha ANCESTRAL SPECIES 60 ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.a.a ENSGT00940000155211 ENSGT00390000016390 ENSGT00940000159011 ENSGT00940000161328 Muroidea ANCESTRAL SPECIES 72 ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b.a ENSGT00940000153321.b.b.l.b.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.a.a ENSGT00940000155211 ENSGT00390000016390 ENSGT00940000159011 Muroidea_A ANCESTRAL SPECIES 14 ENSGT00530000063860.a ENSGT00940000155437 ENSGT00950000183227 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00940000157891 ENSGT00940000154808.a.b ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00950000183043.a.b.b.a.b.u.b ENSGT00950000183043.a.b.b.a.a.a.b ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b.a.a.a.b ENSGT00940000153321.b.b.l.b.a.a.a.a ENSGT00940000153321.b.b.l.b.a.b ENSGT00940000153321.b.b.l.b.b.b.b.b ENSGT00940000153321.b.b.l.b.b.b.b.a Cricetidae ANCESTRAL SPECIES 22 ENSGT00530000063860.a ENSGT00940000155437 ENSGT00950000183227 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00940000157891 ENSGT00940000154808.a.b ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.b.a.b #18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00950000183043.a.b.b.a.b.u.b ENSGT00950000183043.a.b.b.a.a.a.b ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b.a.a.a.b ENSGT00940000153321.b.b.l.b.a.a.a.a ENSGT00940000153321.b.b.l.b.a.b ENSGT00940000153321.b.b.l.b.b.b.b.b.b ENSGT00940000153321.b.b.l.b.b.b.b.a Cricetinae ANCESTRAL SPECIES 20 ENSGT00530000063860.a ENSGT00940000155437 ENSGT00950000183227 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00940000157891 ENSGT00940000154808.a.b ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.b.a.b #18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00950000183043.a.b.b.a.b.u.b ENSGT00950000183043.a.b.b.a.a.a.b ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b.a.a.a.b ENSGT00940000153321.b.b.l.b.a.a.a.a ENSGT00940000153321.b.b.l.b.a.b ENSGT00940000153321.b.b.l.b.b.b.b.b.b ENSGT00940000153321.b.b.l.b.b.b.b.a Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 317 Smad5 (ENSCGRG00001015176) Smim32 (ENSCGRG00001008174) Trpc7 (ENSCGRG00001024128) Spock1 (ENSCGRG00001004982) Klhl3 (ENSCGRG00001016110) Hnrnpa0 (ENSCGRG00001005548) Idnk (ENSCGRG00001012874) #13 Ubqln1 (ENSCGRG00001010704) #14 Gkap1 (ENSCGRG00001021643) #15 Kif27 (ENSCGRG00001012786) #16 2210016F16Rik (ENSCGRG00001010344) #17 ENSCGRG00001016951 #18 Rmi1 (ENSCGRG00001004591) #19 Slc28a3 (ENSCGRG00001020206) #20 ENSCGRG00001012376 #22 ENSCGRG00001013499 #22 Agtpbp1 (ENSCGRG00001021345) #24 ENSCGRG00001022085 #25 Golm1 (ENSCGRG00001021525) #26 ENSCGRG00001001460 Spata31d1d (ENSCGRG00001011836) 1700014D04Rik (ENSCGRG00001022165) ENSCGRG00001007037 Tut7 (ENSCGRG00001020605) Gas1 (ENSCGRG00001010171) Dapk1 (ENSCGRG00001000497) BC051665 (ENSCGRG00001008665) ENSCGRG00001014152 ENSCGRG00001019274 4930486L24Rik (ENSCGRG00001023066) ENSCGRG00001024602 Chinese hamster chok1gshd MODERN SPECIES 317 Tgfbi (ENSCGRG00001015154) Smad5 (ENSCGRG00001015176) Smim32 (ENSCGRG00001008174) Trpc7 (ENSCGRG00001024128) Spock1 (ENSCGRG00001004982) Klhl3 (ENSCGRG00001016110) Hnrnpa0 (ENSCGRG00001005548) Idnk (ENSCGRG00001012874) #13 Ubqln1 (ENSCGRG00001010704) #14 Gkap1 (ENSCGRG00001021643) #15 Kif27 (ENSCGRG00001012786) #16 2210016F16Rik (ENSCGRG00001010344) #17 ENSCGRG00001016951 #18 Rmi1 (ENSCGRG00001004591) #19 Slc28a3 (ENSCGRG00001020206) #20 ENSCGRG00001012376 #22 ENSCGRG00001013499 #22 Agtpbp1 (ENSCGRG00001021345) #24 ENSCGRG00001022085 #25 Golm1 (ENSCGRG00001021525) #26 ENSCGRG00001001460 Spata31d1d (ENSCGRG00001011836) 1700014D04Rik (ENSCGRG00001022165) ENSCGRG00001007037 Tut7 (ENSCGRG00001020605) Gas1 (ENSCGRG00001010171) Dapk1 (ENSCGRG00001000497) BC051665 (ENSCGRG00001008665) ENSCGRG00001014152 ENSCGRG00001019274 4930486L24Rik (ENSCGRG00001023066) Golden Hamster MODERN SPECIES 699 Lect2 (ENSMAUG00000017197) Tgfbi (ENSMAUG00000011927) Smad5 (ENSMAUG00000014743) Smim32 (ENSMAUG00000017385) Trpc7 (ENSMAUG00000008291) Spock1 (ENSMAUG00000012855) Klhl3 (ENSMAUG00000015096) Hnrnpa0 (ENSMAUG00000018485) Idnk (ENSMAUG00000011365) #13 Ubqln1 (ENSMAUG00000009272) #14 Gkap1 (ENSMAUG00000009206) #15 Kif27 (ENSMAUG00000007799) #16 2210016F16Rik (ENSMAUG00000001833) #17 ENSMAUG00000015268 #18 Slc28a3 (ENSMAUG00000007466) #20 Ntrk2 (ENSMAUG00000014898) #22 ENSMAUG00000002599 Naa35 (ENSMAUG00000006704) #25 ENSMAUG00000012538 #26 1700014D04Rik (ENSMAUG00000020029) ENSMAUG00000000645 Tut7 (ENSMAUG00000006963) Gas1 (ENSMAUG00000019435) Dapk1 (ENSMAUG00000000180) BC051665 (ENSMAUG00000012142) Ctsll3 (ENSMAUG00000014374) Ctsj (ENSMAUG00000008852) Cts6 (ENSMAUG00000016662) Ctsr (ENSMAUG00000014961) Cts8 (ENSMAUG00000018878) ENSMAUG00000016362 Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00940000155437 ENSGT00950000183227 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00940000157891 ENSGT00940000154808.a.b ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000153434.a.b.a.b #18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00950000183043.a.b.b.a.b.u.a.b ENSGT00950000183043.a.b.b.a.a.a.b ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b.a.a.a.b ENSGT00940000153321.b.b.l.b.a.a.a.a ENSGT00940000153321.b.b.l.b.a.b ENSGT00940000153321.b.b.l.b.b.b.b.b.a ENSGT00940000153321.b.b.l.b.b.b.b.a Prairie vole MODERN SPECIES 3 Smad5 (ENSMOCG00000014515) Smim32 (ENSMOCG00000005510) Trpc7 (ENSMOCG00000007497) Spock1 (ENSMOCG00000020464) ENSMOCG00000022384 Klhl3 (ENSMOCG00000009025) ENSMOCG00000021968 Idnk (ENSMOCG00000010669) #13 Ubqln1 (ENSMOCG00000001210) #14 Gkap1 (ENSMOCG00000011062) #15 Kif27 (ENSMOCG00000015570) #16 2210016F16Rik (ENSMOCG00000017857) #17 ENSMOCG00000001446 #18 Rmi1 (ENSMOCG00000016761) #19 Slc28a3 (ENSMOCG00000005269) #20 Ntrk2 (ENSMOCG00000015461) #22 Agtpbp1 (ENSMOCG00000014650) #24 Naa35 (ENSMOCG00000013999) #25 ENSMOCG00000019507 #26 4921517D22Rik (ENSMOCG00000022999) ENSMOCG00000000876 ENSMOCG00000000209 ENSMOCG00000007812 ENSMOCG00000022892 Gas1 (ENSMOCG00000002738) Dapk1 (ENSMOCG00000016789) ENSMOCG00000012620 ENSMOCG00000019948 4930486L24Rik (ENSMOCG00000005874) Ctsj (ENSMOCG00000013146) ENSMOCG00000000781 Northern American deer mouse MODERN SPECIES 18 Tgfbi (ENSPEMG00000015916) Smad5 (ENSPEMG00000015274) Smim32 (ENSPEMG00000012949) Trpc7 (ENSPEMG00000012611) ENSPEMG00000026613 Spock1 (ENSPEMG00000008714) Klhl3 (ENSPEMG00000000777) Hnrnpa0 (ENSPEMG00000020274) Idnk (ENSPEMG00000020260) #13 Ubqln1 (ENSPEMG00000020227) #14 Gkap1 (ENSPEMG00000020170) #15 Kif27 (ENSPEMG00000014256) #16 2210016F16Rik (ENSPEMG00000018085) #17 Hnrnpk (ENSPEMG00000012825) ##18 Slc28a3 (ENSPEMG00000016674) #20 Ntrk2 (ENSPEMG00000000060) #22 ENSPEMG00000030036 Agtpbp1 (ENSPEMG00000003465) #24 Naa35 (ENSPEMG00000020283) #25 Golm1 (ENSPEMG00000021119) #26 4921517D22Rik (ENSPEMG00000022165) ENSPEMG00000025782 ENSPEMG00000025105 ENSPEMG00000028848 ENSPEMG00000029941 Tut7 (ENSPEMG00000014030) Gas1 (ENSPEMG00000007789) Dapk1 (ENSPEMG00000022627) BC051665 (ENSPEMG00000025235) Ctsll3 (ENSPEMG00000029464) 4930486L24Rik (ENSPEMG00000016874) Murinae ANCESTRAL SPECIES 21 ENSGT00530000063860.a ENSGT00940000155437 ENSGT00950000183227 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00940000157891 ENSGT00940000154808.a.b ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ENSGT00950000183043.a.b.b.a.b.u.a.b.a ENSGT00950000183043.a.b.b.a.b.u.b ENSGT00950000183043.a.b.b.a.a.a.b ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b.a.a.a.b ENSGT00940000153321.b.b.l.b.a.a.a.a ENSGT00940000153321.b.b.l.b.a.b Mus ANCESTRAL SPECIES 18 ENSGT00530000063860.a ENSGT00940000155437 ENSGT00950000183227 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00940000157891 ENSGT00940000154808.a.b ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ENSGT00950000183043.a.b.b.a.b.u.a.b.a ENSGT00950000183043.a.b.b.a.b.u.b ENSGT00950000183043.a.b.b.a.a.a.b ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00800000125290 ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b.a.a.a.b ENSGT00940000153321.b.b.l.b.a.a.a.a Mus_A ANCESTRAL SPECIES 14 ENSGT00530000063860.a ENSGT00940000155437 ENSGT00950000183227 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00940000157891 ENSGT00940000154808.a.b ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ENSGT00950000183043.a.b.b.a.b.u.a.b.a ENSGT00950000183043.a.b.b.a.b.u.b ENSGT00950000183043.a.b.b.a.a.a.b ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00800000125290 ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b.a.a.a.b ENSGT00940000153321.b.b.l.b.a.a.a.a Mus_B ANCESTRAL SPECIES 13 ENSGT00530000063860.a ENSGT00940000155437 ENSGT00950000183227 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00940000157891 ENSGT00940000154808.a.b ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ENSGT00950000183043.a.b.b.a.b.u.a.b.a ENSGT00950000183043.a.b.b.a.b.u.b ENSGT00950000183043.a.b.b.a.a.a.b ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00800000125290 ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b.a.a.a.b ENSGT00940000153321.b.b.l.b.a.a.a.a Mouse MODERN SPECIES 4 Tgfbi (ENSMUSG00000035493) Smad5 (ENSMUSG00000021540) Smim32 (ENSMUSG00000110086) Trpc7 (ENSMUSG00000021541) Spock1 (ENSMUSG00000056222) Klhl3 (ENSMUSG00000014164) Hnrnpa0 (ENSMUSG00000007836) Idnk (ENSMUSG00000050002) #13 Ubqln1 (ENSMUSG00000005312) #14 Gkap1 (ENSMUSG00000021552) #15 Kif27 (ENSMUSG00000060176) #16 2210016F16Rik (ENSMUSG00000021550) #17 Hnrnpk (ENSMUSG00000021546) ##18 Rmi1 (ENSMUSG00000035367) #19 Slc28a3 (ENSMUSG00000021553) #20 Ntrk2 (ENSMUSG00000055254) #22 Agtpbp1 (ENSMUSG00000021557) #24 Naa35 (ENSMUSG00000021555) #25 Golm1 (ENSMUSG00000021556) #26 4921517D22Rik (ENSMUSG00000049902) Spata31d1a (ENSMUSG00000050876) Spata31d1b (ENSMUSG00000091311) Spata31d1d (ENSMUSG00000043986) 1700014D04Rik (ENSMUSG00000051054) Isca1 (ENSMUSG00000044792) Tut7 (ENSMUSG00000035248) Gas1 (ENSMUSG00000052957) Dapk1 (ENSMUSG00000021559) BC051665 (ENSMUSG00000042243) Ctsll3 (ENSMUSG00000056728) 4930486L24Rik (ENSMUSG00000050345) Mus_C ANCESTRAL SPECIES 10 ENSGT00530000063860.a ENSGT00940000155437 ENSGT00950000183227 ENSGT01060000248588.a.c.a ENSGT00940000158371 ENSGT00940000157891 ENSGT00940000154808.a.b ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ENSGT00950000183043.a.b.b.a.b.u.a.b.a ENSGT00950000183043.a.b.b.a.b.u.b ENSGT00950000183043.a.b.b.a.a.a.b ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00800000125290 ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b.a.a.a.b ENSGT00940000153321.b.b.l.b.a.a.a.a spretus MODERN SPECIES 4 Lect2 (MGP_SPRETEiJ_G0019467) Tgfbi (MGP_SPRETEiJ_G0019468) Smad5 (MGP_SPRETEiJ_G0019469) Trpc7 (MGP_SPRETEiJ_G0019470) Spock1 (MGP_SPRETEiJ_G0019471) Klhl3 (MGP_SPRETEiJ_G0019472) Hnrnpa0 (MGP_SPRETEiJ_G0019473) Idnk (MGP_SPRETEiJ_G0019474) #13 Ubqln1 (MGP_SPRETEiJ_G0019475) #14 Gkap1 (MGP_SPRETEiJ_G0019476) #15 Kif27 (MGP_SPRETEiJ_G0019477) #16 2210016F16Rik (MGP_SPRETEiJ_G0019478) #17 Hnrnpk (MGP_SPRETEiJ_G0019479) ##18 Rmi1 (MGP_SPRETEiJ_G0019480) #19 Slc28a3 (MGP_SPRETEiJ_G0019481) #20 Ntrk2 (MGP_SPRETEiJ_G0019482) #22 Agtpbp1 (MGP_SPRETEiJ_G0019483) #24 Naa35 (MGP_SPRETEiJ_G0019484) #25 MGP_SPRETEiJ_G0019485 #26 4921517D22Rik (MGP_SPRETEiJ_G0019486) Spata31d1a (MGP_SPRETEiJ_G0019487) Spata31d1d (MGP_SPRETEiJ_G0019488) 1700014D04Rik (MGP_SPRETEiJ_G0019489) MGP_SPRETEiJ_G0019490 Tut7 (MGP_SPRETEiJ_G0019491) Gas1 (MGP_SPRETEiJ_G0019492) MGP_SPRETEiJ_G0019493 Dapk1 (MGP_SPRETEiJ_G0019494) BC051665 (MGP_SPRETEiJ_G0019495) Ctsll3 (MGP_SPRETEiJ_G0019496) 4930486L24Rik (MGP_SPRETEiJ_G0019497) Steppe mouse MODERN SPECIES 3363 Smad5 (ENSMSIG00000019822) Smim32 (ENSMSIG00000019832) Trpc7 (ENSMSIG00000019854) ENSMSIG00000019959 ENSMSIG00000020017 Klhl3 (ENSMSIG00000020033) Idnk (ENSMSIG00000020108) #13 Ubqln1 (ENSMSIG00000020154) #14 Gkap1 (ENSMSIG00000020227) #15 Kif27 (ENSMSIG00000020244) #16 2210016F16Rik (ENSMSIG00000020343) #17 Hnrnpk (ENSMSIG00000020356) ##18 Rmi1 (ENSMSIG00000020651) #19 Slc28a3 (ENSMSIG00000020681) #20 ENSMSIG00000020732 Ntrk2 (ENSMSIG00000020750) #22 Agtpbp1 (ENSMSIG00000021104) #24 Naa35 (ENSMSIG00000021291) #25 Golm1 (ENSMSIG00000021316) #26 4921517D22Rik (ENSMSIG00000021349) Spata31d1a (ENSMSIG00000021365) Spata31d1b (ENSMSIG00000021379) Spata31d1d (ENSMSIG00000021387) 1700014D04Rik (ENSMSIG00000021396) ENSMSIG00000021410 Tut7 (ENSMSIG00000021435) Gas1 (ENSMSIG00000021556) ENSMSIG00000021571 ENSMSIG00000021574 Dapk1 (ENSMSIG00000021579) BC051665 (ENSMSIG00000021609) Ryukyu mouse MODERN SPECIES 4 Lect2 (MGP_CAROLIEiJ_G0018587) Tgfbi (MGP_CAROLIEiJ_G0018588) Smad5 (MGP_CAROLIEiJ_G0018589) Trpc7 (MGP_CAROLIEiJ_G0018590) Spock1 (MGP_CAROLIEiJ_G0018591) Klhl3 (MGP_CAROLIEiJ_G0018592) Hnrnpa0 (MGP_CAROLIEiJ_G0018593) Idnk (MGP_CAROLIEiJ_G0018594) #13 Ubqln1 (MGP_CAROLIEiJ_G0018595) #14 Gkap1 (MGP_CAROLIEiJ_G0018596) #15 Kif27 (MGP_CAROLIEiJ_G0018597) #16 2210016F16Rik (MGP_CAROLIEiJ_G0018598) #17 MGP_CAROLIEiJ_G0018599 ##18 Rmi1 (MGP_CAROLIEiJ_G0018600) #19 Slc28a3 (MGP_CAROLIEiJ_G0018601) #20 Ntrk2 (MGP_CAROLIEiJ_G0018602) #22 Agtpbp1 (MGP_CAROLIEiJ_G0018603) #24 MGP_CAROLIEiJ_G0018604 #25 Golm1 (MGP_CAROLIEiJ_G0018605) #26 4921517D22Rik (MGP_CAROLIEiJ_G0018606) MGP_CAROLIEiJ_G0018607 MGP_CAROLIEiJ_G0018608 Spata31d1d (MGP_CAROLIEiJ_G0018609) 1700014D04Rik (MGP_CAROLIEiJ_G0018610) MGP_CAROLIEiJ_G0018611 Tut7 (MGP_CAROLIEiJ_G0018612) Gas1 (MGP_CAROLIEiJ_G0018613) MGP_CAROLIEiJ_G0018614 Dapk1 (MGP_CAROLIEiJ_G0018615) BC051665 (MGP_CAROLIEiJ_G0018616) Ctsll3 (MGP_CAROLIEiJ_G0018617) Shrew mouse MODERN SPECIES 7 Lect2 (MGP_PahariEiJ_G0019651) Tgfbi (MGP_PahariEiJ_G0019652) Smad5 (MGP_PahariEiJ_G0019653) Trpc7 (MGP_PahariEiJ_G0019654) Spock1 (MGP_PahariEiJ_G0019655) Klhl3 (MGP_PahariEiJ_G0019656) Hnrnpa0 (MGP_PahariEiJ_G0019657) Idnk (MGP_PahariEiJ_G0019658) #13 Ubqln1 (MGP_PahariEiJ_G0019659) #14 Gkap1 (MGP_PahariEiJ_G0019660) #15 Kif27 (MGP_PahariEiJ_G0019661) #16 2210016F16Rik (MGP_PahariEiJ_G0019662) #17 Hnrnpk (MGP_PahariEiJ_G0019663) ##18 Rmi1 (MGP_PahariEiJ_G0019664) #19 Slc28a3 (MGP_PahariEiJ_G0019665) #20 Ntrk2 (MGP_PahariEiJ_G0019666) #22 Agtpbp1 (MGP_PahariEiJ_G0019667) #24 Naa35 (MGP_PahariEiJ_G0019668) #25 Golm1 (MGP_PahariEiJ_G0019669) #26 4921517D22Rik (MGP_PahariEiJ_G0019670) MGP_PahariEiJ_G0019671 Spata31d1b (MGP_PahariEiJ_G0019672) Spata31d1d (MGP_PahariEiJ_G0019673) 1700014D04Rik (MGP_PahariEiJ_G0019674) MGP_PahariEiJ_G0019675 Tut7 (MGP_PahariEiJ_G0019676) Gas1 (MGP_PahariEiJ_G0019677) MGP_PahariEiJ_G0019678 Dapk1 (MGP_PahariEiJ_G0019679) BC051665 (MGP_PahariEiJ_G0019680) Ctsll3 (MGP_PahariEiJ_G0019681) Rat MODERN SPECIES 8 Lect2 (ENSRNOG00000012189) Tgfbi (ENSRNOG00000012216) Smad5 (ENSRNOG00000022870) Trpc7 (ENSRNOG00000012727) Spock1 (ENSRNOG00000012747) Klhl3 (ENSRNOG00000019533) Hnrnpa0 (ENSRNOG00000039876) Idnk (ENSRNOG00000019519) #13 Ubqln1 (ENSRNOG00000019282) #14 Gkap1 (ENSRNOG00000019272) #15 Kif27 (ENSRNOG00000019257) #16 RGD1311345 (ENSRNOG00000019232) #17 Hnrnpk (ENSRNOG00000019113) ##18 Rmi1 (ENSRNOG00000019108) #19 Slc28a3 (ENSRNOG00000018853) #20 Ntrk2 (ENSRNOG00000018839) #22 Agtpbp1 (ENSRNOG00000018651) #24 ENSRNOG00000064986 Naa35 (ENSRNOG00000018417) #25 Golm1 (ENSRNOG00000018400) #26 LOC100912252 (ENSRNOG00000042206) Spata31d3 (ENSRNOG00000056413) Spata31d1b (ENSRNOG00000069288) Spata31d1 (ENSRNOG00000027014) AABR07026929.1 (ENSRNOG00000042026) Isca1 (ENSRNOG00000018343) Tut7 (ENSRNOG00000016629) Dapk1 (ENSRNOG00000018198) RGD1308751 (ENSRNOG00000039954) Ctsll3 (ENSRNOG00000069877) Testin (ENSRNOG00000018028) Upper Galilee mountains blind mole rat MODERN SPECIES 1489 Cdx1 (ENSNGAG00000010930) Slc6a7 (ENSNGAG00000012791) Camk2a (ENSNGAG00000018083) Arsi (ENSNGAG00000007333) Tcof1 (ENSNGAG00000010935) Cd74 (ENSNGAG00000013216) ENSNGAG00000015311 Ndst1 (ENSNGAG00000015671) Synpo (ENSNGAG00000016235) Myoz3 (ENSNGAG00000016944) ENSNGAG00000018233 Dctn4 (ENSNGAG00000001371) Hnrnpk (ENSNGAG00000007861) ##18 Rmi1 (ENSNGAG00000001251) #19 Slc28a3 (ENSNGAG00000006769) #20 Ntrk2 (ENSNGAG00000018123) #22 Lesser Egyptian jerboa MODERN SPECIES 140 Ntrk2 (ENSJJAG00000021752) #22 ENSJJAG00000005663 #24 Naa35 (ENSJJAG00000017242) #25 ENSJJAG00000012845 Gng5c (ENSJJAG00000019410) ENSJJAG00000020570 Fbxw17 (ENSJJAG00000021791) ENSJJAG00000004057 Acad9 (ENSJJAG00000015247) Anxa5 (ENSJJAG00000021568) Exosc9 (ENSJJAG00000008858) Ccna2 (ENSJJAG00000014491) Bbs7 (ENSJJAG00000018393) Trpc3 (ENSJJAG00000017994) ENSJJAG00000013168 ENSJJAG00000018073 Rodentia_A ANCESTRAL SPECIES 11 ENSGT00940000161347 ENSGT00390000013287 ENSGT00940000153241.A ENSGT01030000234519.e.a.a.a.a.b ENSGT01030000234519.e.a.a.a.a.a ENSGT00940000159488 ENSGT00940000158577 #12 ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b Hystricomorpha ANCESTRAL SPECIES 14 ENSGT00940000153979.B ENSGT00940000156889 ENSGT00530000063909.b ENSGT00940000160249 ENSGT00940000159175 ENSGT00940000155287.i.a ENSGT00940000158577 #12 ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b Hystricomorpha_a ANCESTRAL SPECIES 43 ENSGT00940000156889 ENSGT00530000063909.b ENSGT00940000160249 ENSGT00940000159175 ENSGT00940000155287.i.a ENSGT00940000155287.i.b ENSGT00940000158577 #12 ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00940000153424.a.b Hystricomorpha_b ANCESTRAL SPECIES 62 ENSGT00940000156889 ENSGT00530000063909.b ENSGT00940000160249 ENSGT00940000159175 ENSGT00940000155287.i.a ENSGT00940000155287.i.b ENSGT00940000158577 #12 ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374 #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00940000153424.a.b Long-tailed chinchilla MODERN SPECIES 139 RUNDC3B (ENSCLAG00000005388) ENSCLAG00000005038 ENSCLAG00000004421 ENSCLAG00000004409 ENSCLAG00000004191 FRMD3 (ENSCLAG00000004066) #12 IDNK (ENSCLAG00000003988) #13 UBQLN1 (ENSCLAG00000003708) #14 GKAP1 (ENSCLAG00000003414) #15 KIF27 (ENSCLAG00000003102) #16 C9orf64 (ENSCLAG00000002920) #17 HNRNPK (ENSCLAG00000005883) ##18 RMI1 (ENSCLAG00000017662) #19 SLC28A3 (ENSCLAG00000005357) #20 ENSCLAG00000005146 NTRK2 (ENSCLAG00000004746) #22 ENSCLAG00000004540 AGTPBP1 (ENSCLAG00000009351) #24 NAA35 (ENSCLAG00000008861) #25 GOLM1 (ENSCLAG00000008736) #26 ENSCLAG00000008692 ENSCLAG00000007775 TUT7 (ENSCLAG00000007535) ENSCLAG00000007415 ENSCLAG00000007321 DAPK1 (ENSCLAG00000006636) Degu MODERN SPECIES 152 FRMD3 (ENSODEG00000005736) #12 IDNK (ENSODEG00000005137) #13 UBQLN1 (ENSODEG00000005531) #14 GKAP1 (ENSODEG00000006292) #15 KIF27 (ENSODEG00000006267) #16 ENSODEG00000006494 ENSODEG00000006230 #17 HNRNPK (ENSODEG00000005637) ##18 RMI1 (ENSODEG00000004954) #19 ENSODEG00000006844 SLC28A3 (ENSODEG00000004732) #20 NTRK2 (ENSODEG00000005490) #22 ENSODEG00000005328 AGTPBP1 (ENSODEG00000005635) #24 NAA35 (ENSODEG00000005083) #25 ENSODEG00000005810 #26 ENSODEG00000019211 ENSODEG00000005480 ENSODEG00000006904 ENSODEG00000006376 ENSODEG00000004592 ENSODEG00000005716 DAPK1 (ENSODEG00000005070) ENSODEG00000005255 ATP12A (ENSODEG00000005612) ENSODEG00000005443 CENPJ (ENSODEG00000004803) Guinea pig MODERN SPECIES 11 SLC25A40 (ENSCPOG00000037087) RUNDC3B (ENSCPOG00000004608) Abcb1 (ENSCPOG00000012422) ENSCPOG00000038988 ENSCPOG00000039015 FRMD3 (ENSCPOG00000006085) #12 UBQLN1 (ENSCPOG00000004849) #14 ENSCPOG00000023953 GKAP1 (ENSCPOG00000034577) #15 ENSCPOG00000020823 KIF27 (ENSCPOG00000002485) #16 C9orf64 (ENSCPOG00000001990) #17 ENSCPOG00000005024 ##18 RMI1 (ENSCPOG00000010177) #19 SLC28A3 (ENSCPOG00000013188) #20 NTRK2 (ENSCPOG00000032833) #22 AGTPBP1 (ENSCPOG00000019771) #24 NAA35 (ENSCPOG00000032357) #25 GOLM1 (ENSCPOG00000003829) #26 ENSCPOG00000032645 TUT7 (ENSCPOG00000002500) DAPK1 (ENSCPOG00000000987) ENSCPOG00000032751 WNT8B (ENSCPOG00000027283) SEC31B (ENSCPOG00000007432) NDUFB8 (ENSCPOG00000024799) HIF1AN (ENSCPOG00000009881) PAX2 (ENSCPOG00000000939) SLF2 (ENSCPOG00000000940) SEMA4G (ENSCPOG00000036564) MRPL43 (ENSCPOG00000040768) Naked mole-rat female MODERN SPECIES 5 ENSHGLG00000036160 ENSHGLG00000043806 ENSHGLG00000038468 ENSHGLG00000015082 ENSHGLG00000041886 ENSHGLG00000032554 ENSHGLG00000032822 ENSHGLG00000034355 ENSHGLG00000018511 #16 ENSHGLG00000032986 ENSHGLG00000048823 #17 ENSHGLG00000036726 #18 RMI1 (ENSHGLG00000048963) #19 ENSHGLG00000033908 SLC28A3 (ENSHGLG00000017777) #20 NTRK2 (ENSHGLG00000017693) #22 ENSHGLG00000039873 ENSHGLG00000039492 AGTPBP1 (ENSHGLG00000017732) #24 NAA35 (ENSHGLG00000017763) #25 GOLM1 (ENSHGLG00000017786) #26 DAPK1 (ENSHGLG00000017803) ENSHGLG00000031937 Sciuridae ANCESTRAL SPECIES 6 ENSGT00940000162569.b ENSGT00390000013287 ENSGT00940000153241.A ENSGT01030000234519.e.a.a.a.a.b ENSGT01030000234519.e.a.a.a.a.a ENSGT00940000159488 ENSGT00940000158577 #12 ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374.u #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00390000016025.a #20 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b Marmotini ANCESTRAL SPECIES 108 ENSGT00940000158577 #12 ENSGT00390000003364 #13 ENSGT00940000156437 #14 ENSGT00390000008742 #15 ENSGT00940000157487 #16 ENSGT00390000002374.u #17 ENSGT00940000153434.a.a ##18 ENSGT00940000161055 #19 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b Marmotini_b ANCESTRAL SPECIES 246 ENSGT00940000155181 #22 ENSGT00940000157707 #24 ENSGT00390000002445 #25 ENSGT00530000063675.b #26 ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b Arctic ground squirrel MODERN SPECIES 464 NTRK2 (ENSUPAG00010012718) #22 AGTPBP1 (ENSUPAG00010012551) #24 Squirrel MODERN SPECIES 280 NTRK2 (ENSSTOG00000008937) #22 AGTPBP1 (ENSSTOG00000001961) #24 NAA35 (ENSSTOG00000015631) #25 ENSSTOG00000024100 #26 ENSSTOG00000028077 ISCA1 (ENSSTOG00000000582) TUT7 (ENSSTOG00000000586) DAPK1 (ENSSTOG00000015490) ENSSTOG00000015504 Alpin marmot MODERN SPECIES 110 FRMD3 (ENSMMMG00000020277) #12 IDNK (ENSMMMG00000020307) #13 UBQLN1 (ENSMMMG00000020310) #14 GKAP1 (ENSMMMG00000020324) #15 KIF27 (ENSMMMG00000020345) #16 ENSMMMG00000020375 #17 HNRNPK (ENSMMMG00000020381) ##18 RMI1 (ENSMMMG00000020479) #19 ENSMMMG00000020486 ENSMMMG00000020492 NTRK2 (ENSMMMG00000020504) #22 ENSMMMG00000020766 AGTPBP1 (ENSMMMG00000020771) #24 NAA35 (ENSMMMG00000020822) #25 ENSMMMG00000020836 #26 ENSMMMG00000020844 #26 ENSMMMG00000020847 ENSMMMG00000020856 TUT7 (ENSMMMG00000020866) Eurasian red squirrel MODERN SPECIES 6 RASEF (ENSSVLG00005025415) FRMD3 (ENSSVLG00005025365) #12 ENSSVLG00005025340 IDNK (ENSSVLG00005025283) #13 UBQLN1 (ENSSVLG00005025254) #14 ENSSVLG00005025241 GKAP1 (ENSSVLG00005025203) #15 ENSSVLG00005025192 KIF27 (ENSSVLG00005025080) #16 ENSSVLG00005025013 #17 HNRNPK (ENSSVLG00005024963) ##18 RMI1 (ENSSVLG00005024865) #19 ENSSVLG00005024855 ENSSVLG00005024836 SLC28A3 (ENSSVLG00005024780) #20 NTRK2 (ENSSVLG00005024628) #22 AGTPBP1 (ENSSVLG00005024487) #24 NAA35 (ENSSVLG00005024431) #25 GOLM1 (ENSSVLG00005024384) #26 ENSSVLG00005024339 ISCA1 (ENSSVLG00005024297) TUT7 (ENSSVLG00005024220) GAS1 (ENSSVLG00005024195) DAPK1 (ENSSVLG00005024152) ENSSVLG00005024080 ENSSVLG00005024060