Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00940000159575 #23	ENSGT00950000182999.a.b #24	ENSGT00940000162555	ENSGT00940000161497	ENSGT00940000159114 #26	ENSGT00940000162428.b #27	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00390000008536	ENSGT00940000168471
Glires	ANCESTRAL SPECIES	1	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000161497	ENSGT00940000159114 #26	ENSGT00940000162428.b #27	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00390000008536	ENSGT00940000168471
Rodentia	ANCESTRAL SPECIES	1	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000161497	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000159782	ENSGT01100000263709	ENSGT00390000015655.a
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00940000159575 #23	ENSGT00950000182999.a.b #24	ENSGT00940000162555	ENSGT00940000161497	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000159782	ENSGT01100000263709	ENSGT00390000015655.a
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00940000159575 #23	ENSGT00950000182999.a.b #24	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000159782	ENSGT01100000263709	ENSGT00390000015655.a	ENSGT00940000159933
Marmotini	ANCESTRAL SPECIES	20	ENSGT00390000013786 #7	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b.e #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000159782	ENSGT01100000263709	ENSGT00390000015655.a	ENSGT00940000159933
Marmotini_b	ANCESTRAL SPECIES	122	ENSGT00390000013786 #7	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b.e #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000159782	ENSGT01100000263709	ENSGT00390000015655.a	ENSGT00940000159933
Arctic ground squirrel	MODERN SPECIES	103	CEP126 (ENSUPAG00010019487) #7	CFAP300 (ENSUPAG00010019501) #8	YAP1 (ENSUPAG00010019515) #9	BIRC3 (ENSUPAG00010019528) #10	BIRC2 (ENSUPAG00010019549) #11	TMEM123 (ENSUPAG00010019562) #12	MMP7 (ENSUPAG00010019569) #13	MMP20 (ENSUPAG00010019573) #14	MMP27 (ENSUPAG00010019583) #15	MMP8 (ENSUPAG00010019593) #16	MMP3 (ENSUPAG00010019608) #17	MMP1 (ENSUPAG00010019633) #18	MMP12 (ENSUPAG00010019655) #19	MMP13 (ENSUPAG00010019662) #20	DCUN1D5 (ENSUPAG00010019672) #21	DYNC2H1 (ENSUPAG00010019688) #22	PDGFD (ENSUPAG00010019962) #23	DDI1 (ENSUPAG00010019982) #24	ENSUPAG00010019986 #25	ENSUPAG00010019990 #26	ENSUPAG00010020000 #27
Squirrel	MODERN SPECIES	151	YAP1 (ENSSTOG00000004960) #9	BIRC3 (ENSSTOG00000005734) #10	ENSSTOG00000005754 #11	ENSSTOG00000026499	TMEM123 (ENSSTOG00000032785) #12	MMP7 (ENSSTOG00000027961) #13	MMP20 (ENSSTOG00000023437) #14	MMP27 (ENSSTOG00000008513) #15	MMP8 (ENSSTOG00000008539) #16	ENSSTOG00000008555 #17	MMP1 (ENSSTOG00000008571) #18	MMP3 (ENSSTOG00000008584) #17	MMP12 (ENSSTOG00000008600) #19	MMP13 (ENSSTOG00000008612) #20	DCUN1D5 (ENSSTOG00000013580) #21	DYNC2H1 (ENSSTOG00000026849) #22	DDI1 (ENSSTOG00000004248) #24	PDGFD (ENSSTOG00000004230) #23	ENSSTOG00000002855 #27	ENSSTOG00000007964 #26	GRIA4 (ENSSTOG00000000265)	MSANTD4 (ENSSTOG00000027044)	KBTBD3 (ENSSTOG00000001079)	AASDHPPT (ENSSTOG00000000268)	GUCY1A2 (ENSSTOG00000013157)	ENSSTOG00000027350	ENSSTOG00000033115	ALKBH8 (ENSSTOG00000024939)	ELMOD1 (ENSSTOG00000001237)	ENSSTOG00000001241	SLC35F2 (ENSSTOG00000011321)
Alpin marmot	MODERN SPECIES	25	CFAP300 (ENSMMMG00000002751) #8	YAP1 (ENSMMMG00000002718) #9	BIRC3 (ENSMMMG00000002693) #10	ENSMMMG00000002595 #11	TMEM123 (ENSMMMG00000002579) #12	MMP7 (ENSMMMG00000002551) #13	MMP20 (ENSMMMG00000002519) #14	MMP27 (ENSMMMG00000002490) #15	MMP8 (ENSMMMG00000002471) #16	ENSMMMG00000002452 #17	MMP1 (ENSMMMG00000002402) #18	MMP3 (ENSMMMG00000002377) #17	MMP12 (ENSMMMG00000002359) #19	MMP13 (ENSMMMG00000002337) #20	DCUN1D5 (ENSMMMG00000002318) #21	DYNC2H1 (ENSMMMG00000001718) #22	ENSMMMG00000001663	ENSMMMG00000001653	DDI1 (ENSMMMG00000001629) #24	PDGFD (ENSMMMG00000001580) #23	ENSMMMG00000001554 #27	ENSMMMG00000001523 #26	ENSMMMG00000001357 #27	ENSMMMG00000001339	GRIA4 (ENSMMMG00000001185)	MSANTD4 (ENSMMMG00000001156)	KBTBD3 (ENSMMMG00000001143)	AASDHPPT (ENSMMMG00000001128)	ENSMMMG00000001082	CWF19L2 (ENSMMMG00000001043)	ALKBH8 (ENSMMMG00000000941)
Eurasian red squirrel	MODERN SPECIES	2	CFAP300 (ENSSVLG00005013383) #8	YAP1 (ENSSVLG00005013738) #9	BIRC3 (ENSSVLG00005013872) #10	BIRC2 (ENSSVLG00005013957) #11	TMEM123 (ENSSVLG00005014049) #12	MMP7 (ENSSVLG00005014206) #13	MMP20 (ENSSVLG00005014300) #14	MMP27 (ENSSVLG00005014388) #15	MMP8 (ENSSVLG00005014523) #16	MMP10 (ENSSVLG00005014643)	MMP1 (ENSSVLG00005014774) #18	MMP3 (ENSSVLG00005014901) #17	MMP12 (ENSSVLG00005015038) #19	MMP13 (ENSSVLG00005015162) #20	DCUN1D5 (ENSSVLG00005015275) #21	DYNC2H1 (ENSSVLG00005015721) #22	ENSSVLG00005018071	ENSSVLG00005018153	PDGFD (ENSSVLG00005018195) #23	DDI1 (ENSSVLG00005018324) #24	ENSSVLG00005018358 #27	ENSSVLG00005018566 #26	ENSSVLG00005019096	GRIA4 (ENSSVLG00005019563)	MSANTD4 (ENSSVLG00005019923)	KBTBD3 (ENSSVLG00005019983)	AASDHPPT (ENSSVLG00005020020)	ENSSVLG00005020058	GUCY1A2 (ENSSVLG00005020104)	CWF19L2 (ENSSVLG00005020205)	ENSSVLG00005020267
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00940000159575 #23	ENSGT00950000182999.a.b #24	ENSGT00940000162555	ENSGT00940000161497	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000168471	ENSGT00940000159782	ENSGT00390000015655.a
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00390000013786 #7	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00940000159575 #23	ENSGT00950000182999.a.b #24	ENSGT00940000162555	ENSGT00940000161497	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000168471	ENSGT00940000159782	ENSGT00390000015655.a
Hystricomorpha_b	ANCESTRAL SPECIES	23	ENSGT00390000013786 #7	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00940000159575 #23	ENSGT00950000182999.a.b #24	ENSGT00940000162555	ENSGT00940000161497	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000168471	ENSGT00940000159782	ENSGT00390000015655.a
Long-tailed chinchilla	MODERN SPECIES	119	CEP126 (ENSCLAG00000012819) #7	CFAP300 (ENSCLAG00000013914) #8	YAP1 (ENSCLAG00000011113) #9	BIRC3 (ENSCLAG00000010783) #10	BIRC2 (ENSCLAG00000013394) #11	MMP7 (ENSCLAG00000015356) #13	MMP20 (ENSCLAG00000013214) #14	MMP27 (ENSCLAG00000010798) #15	MMP8 (ENSCLAG00000014040) #16	MMP10 (ENSCLAG00000013443)	MMP1 (ENSCLAG00000011491) #18	MMP3 (ENSCLAG00000012886) #17	MMP12 (ENSCLAG00000014288) #19	MMP13 (ENSCLAG00000011293) #20	DCUN1D5 (ENSCLAG00000010606) #21	DYNC2H1 (ENSCLAG00000014268) #22	PDGFD (ENSCLAG00000013637) #23	DDI1 (ENSCLAG00000014263) #24	ENSCLAG00000015891	ENSCLAG00000012832	ENSCLAG00000015719 #26	GRIA4 (ENSCLAG00000012261)	MSANTD4 (ENSCLAG00000016121)	KBTBD3 (ENSCLAG00000014468)	AASDHPPT (ENSCLAG00000015434)	GUCY1A2 (ENSCLAG00000017060)	CWF19L2 (ENSCLAG00000013844)	ENSCLAG00000015715	ENSCLAG00000011087	ELMOD1 (ENSCLAG00000011927)	ENSCLAG00000011651
Degu	MODERN SPECIES	53	CFAP300 (ENSODEG00000014307) #8	ENSODEG00000013051	YAP1 (ENSODEG00000012897) #9	ENSODEG00000012579	ENSODEG00000013275 #10	ENSODEG00000012602 #11	MMP7 (ENSODEG00000012568) #13	MMP20 (ENSODEG00000012590) #14	MMP27 (ENSODEG00000012636) #15	MMP8 (ENSODEG00000013316) #16	MMP10 (ENSODEG00000014848)	MMP3 (ENSODEG00000012755) #17	MMP12 (ENSODEG00000012714) #19	MMP13 (ENSODEG00000012128) #20	DCUN1D5 (ENSODEG00000012893) #21	DYNC2H1 (ENSODEG00000012699) #22	DDI1 (ENSODEG00000011789) #24	PDGFD (ENSODEG00000011848) #23	ENSODEG00000012044	ENSODEG00000011629	ENSODEG00000013241 #26	GRIA4 (ENSODEG00000012048)	MSANTD4 (ENSODEG00000011017)	KBTBD3 (ENSODEG00000012092)	ENSODEG00000011994	ENSODEG00000012492	ENSODEG00000013543	ALKBH8 (ENSODEG00000011567)	ENSODEG00000020136	ELMOD1 (ENSODEG00000015056)	SLC35F2 (ENSODEG00000012070)
Guinea pig	MODERN SPECIES	19	CEP126 (ENSCPOG00000001844) #7	CFAP300 (ENSCPOG00000011737) #8	YAP1 (ENSCPOG00000033105) #9	BIRC3 (ENSCPOG00000034907) #10	BIRC2 (ENSCPOG00000010349) #11	ENSCPOG00000038069 #13	MMP20 (ENSCPOG00000036970) #14	MMP27 (ENSCPOG00000035593) #15	MMP8 (ENSCPOG00000013813) #16	MMP10 (ENSCPOG00000035812)	MMP1 (ENSCPOG00000006548) #18	MMP3 (ENSCPOG00000033163) #17	MMP12 (ENSCPOG00000036913) #19	MMP13 (ENSCPOG00000000221) #20	DCUN1D5 (ENSCPOG00000036831) #21	DYNC2H1 (ENSCPOG00000014189) #22	PDGFD (ENSCPOG00000038919) #23	DDI1 (ENSCPOG00000000861) #24	CASP12 (ENSCPOG00000035596)	ENSCPOG00000011825	ENSCPOG00000026333 #26	ENSCPOG00000009512	GRIA4 (ENSCPOG00000001062)	MSANTD4 (ENSCPOG00000033859)	KBTBD3 (ENSCPOG00000003792)	AASDHPPT (ENSCPOG00000030678)	ENSCPOG00000040462	GUCY1A2 (ENSCPOG00000000335)	B3GAT1 (ENSCPOG00000023573)	GLB1L2 (ENSCPOG00000000945)	GLB1L3 (ENSCPOG00000034065)
Naked mole-rat female	MODERN SPECIES	24	TRPC6 (ENSHGLG00000000680)	PGR (ENSHGLG00000001843)	ENSHGLG00000000253	ENSHGLG00000002861	ENSHGLG00000003321 #15	MMP8 (ENSHGLG00000003235) #16	MMP10 (ENSHGLG00000003158)	MMP1 (ENSHGLG00000002821) #18	MMP3 (ENSHGLG00000001578) #17	MMP12 (ENSHGLG00000001493) #19	ENSHGLG00000042652	ENSHGLG00000016013	MMP13 (ENSHGLG00000000539) #20	ENSHGLG00000000439 #21	ENSHGLG00000000377	ENSHGLG00000001041 #22	ENSHGLG00000026082	ENSHGLG00000001157	DDI1 (ENSHGLG00000019795) #24	PDGFD (ENSHGLG00000050700) #23	ENSHGLG00000002176	ENSHGLG00000002557	ENSHGLG00000000369	ENSHGLG00000000196 #26	ENSHGLG00000034907	GRIA4 (ENSHGLG00000007205)	MSANTD4 (ENSHGLG00000015607)	KBTBD3 (ENSHGLG00000015784)	ENSHGLG00000015842	ENSHGLG00000042979	GUCY1A2 (ENSHGLG00000017468)
Rodentia_B	ANCESTRAL SPECIES	23	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000159782	ENSGT01100000263709	ENSGT00390000015655.a
Kangaroo rat	MODERN SPECIES	329	Msantd2 (ENSDORG00000002743)	Esam (ENSDORG00000028051)	Vsig2 (ENSDORG00000002740)	Nrgn (ENSDORG00000002739)	Spa17 (ENSDORG00000023533)	Siae (ENSDORG00000002735)	Tbrg1 (ENSDORG00000002733)	Panx3 (ENSDORG00000002966)	ENSDORG00000027724	ENSDORG00000024857	ENSDORG00000027698	ENSDORG00000027629	ENSDORG00000024038	Or8b8 (ENSDORG00000027079)	Dcun1d5 (ENSDORG00000001635) #21	Dync2h1 (ENSDORG00000010115) #22	Pdgfd (ENSDORG00000014006) #23	Ddi1 (ENSDORG00000002404) #24	Casp4 (ENSDORG00000016256) #27	Casp1 (ENSDORG00000016257) #26	ENSDORG00000023554	Msantd4 (ENSDORG00000023419)	Kbtbd3 (ENSDORG00000012680)	Aasdhppt (ENSDORG00000012684)	Gucy1a2 (ENSDORG00000007568)	ENSDORG00000008595	Alkbh8 (ENSDORG00000008596)	Elmod1 (ENSDORG00000008597)	Sln (ENSDORG00000026414)	Slc35f2 (ENSDORG00000016340)	Rab39 (ENSDORG00000026121)
Myomorpha	ANCESTRAL SPECIES	23	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000159782	ENSGT01100000263709	ENSGT00390000015655.a
Lesser Egyptian jerboa	MODERN SPECIES	87	Cfap300 (ENSJJAG00000022122) #8	ENSJJAG00000015982	ENSJJAG00000010414 #9	ENSJJAG00000021580 #10	ENSJJAG00000017306 #11	Tmem123 (ENSJJAG00000014178) #12	Mmp7 (ENSJJAG00000009326) #13	Mmp20 (ENSJJAG00000020407) #14	Mmp27 (ENSJJAG00000011497) #15	Mmp8 (ENSJJAG00000021566) #16	ENSJJAG00000020496	ENSJJAG00000010013 #18	Mmp12 (ENSJJAG00000019762) #19	Mmp13 (ENSJJAG00000013818) #20	Dcun1d5 (ENSJJAG00000004999) #21	Dync2h1 (ENSJJAG00000000557) #22	ENSJJAG00000016889	Ddi1 (ENSJJAG00000000750) #24	Pdgfd (ENSJJAG00000020441) #23
Muroidea	ANCESTRAL SPECIES	29	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000159782	ENSGT01100000263709	ENSGT00390000015655.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	401				Birc2 (ENSNGAG00000011071) #11	ENSNGAG00000000138 #12	Mmp7 (ENSNGAG00000000983) #13	Mmp20 (ENSNGAG00000001298) #14	Mmp27 (ENSNGAG00000001467) #15	Mmp8 (ENSNGAG00000009311) #16	ENSNGAG00000011580	ENSNGAG00000012427 #18	Mmp3 (ENSNGAG00000008287) #17	Mmp12 (ENSNGAG00000012323) #19	Mmp13 (ENSNGAG00000013401) #20	Dcun1d5 (ENSNGAG00000013687) #21	Dync2h1 (ENSNGAG00000000125) #22	Pdgfd (ENSNGAG00000016717) #23
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563
Murinae	ANCESTRAL SPECIES	3	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000159759 #17	ENSGT00940000154907.b.m #18	ENSGT00940000154907.b.n #18	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563
Mus	ANCESTRAL SPECIES	4	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000159759 #17	ENSGT00940000154907.b.m #18	ENSGT00940000154907.b.n #18	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563
Mus_A	ANCESTRAL SPECIES	4	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000159759 #17	ENSGT00940000154907.b.m #18	ENSGT00940000154907.b.n #18	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563
Mus_B	ANCESTRAL SPECIES	3	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000159759 #17	ENSGT00940000154907.b.m #18	ENSGT00940000154907.b.n #18	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563
Mus_C	ANCESTRAL SPECIES	8	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000159759 #17	ENSGT00940000154907.b.m #18	ENSGT00940000154907.b.n #18	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000162428.b #27	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563
spretus	MODERN SPECIES	18	Yap1 (MGP_SPRETEiJ_G0032883) #9	Birc3 (MGP_SPRETEiJ_G0032882) #10	MGP_SPRETEiJ_G0032881 #11	Tmem123 (MGP_SPRETEiJ_G0032880) #12	Mmp7 (MGP_SPRETEiJ_G0032879) #13	Mmp20 (MGP_SPRETEiJ_G0032878) #14	Mmp27 (MGP_SPRETEiJ_G0032877) #15	Mmp8 (MGP_SPRETEiJ_G0032876) #16	MGP_SPRETEiJ_G0032875 #17	MGP_SPRETEiJ_G0032874 #18	MGP_SPRETEiJ_G0032873 #18	MGP_SPRETEiJ_G0032872 #17	Mmp12 (MGP_SPRETEiJ_G0032871) #19	Mmp13 (MGP_SPRETEiJ_G0032870) #20	MGP_SPRETEiJ_G0032869 #21	Dync2h1 (MGP_SPRETEiJ_G0032868) #22	Ddi1 (MGP_SPRETEiJ_G0032867) #24	Pdgfd (MGP_SPRETEiJ_G0032866) #23	Casp12 (MGP_SPRETEiJ_G0032865)	Casp4 (MGP_SPRETEiJ_G0032864) #27	Casp1 (MGP_SPRETEiJ_G0032863) #26	Gria4 (MGP_SPRETEiJ_G0032862)	Msantd4 (MGP_SPRETEiJ_G0032861)	Kbtbd3 (MGP_SPRETEiJ_G0032860)	Aasdhppt (MGP_SPRETEiJ_G0032859)	Gucy1a2 (MGP_SPRETEiJ_G0032858)	Cwf19l2 (MGP_SPRETEiJ_G0032857)	Alkbh8 (MGP_SPRETEiJ_G0032856)
Steppe mouse	MODERN SPECIES	3057				Mmp7 (ENSMSIG00000018503) #13	Mmp20 (ENSMSIG00000018527) #14	Mmp27 (ENSMSIG00000018549) #15	Mmp8 (ENSMSIG00000018618) #16	Mmp10 (ENSMSIG00000018646) #17	Mmp1a (ENSMSIG00000018671) #18	Mmp3 (ENSMSIG00000018686) #17	Mmp1b (ENSMSIG00000018722) #18	Mmp12 (ENSMSIG00000018748) #19	ENSMSIG00000018840	Mmp13 (ENSMSIG00000018843) #20	Dcun1d5 (ENSMSIG00000018871) #21	Dync2h1 (ENSMSIG00000018981) #22	Pdgfd (ENSMSIG00000019889) #23	Ddi1 (ENSMSIG00000019916) #24
Mouse	MODERN SPECIES	18	Yap1 (ENSMUSG00000053110) #9	Birc3 (ENSMUSG00000032000) #10	Birc2 (ENSMUSG00000057367) #11	Tmem123 (ENSMUSG00000050912) #12	Mmp7 (ENSMUSG00000018623) #13	Mmp20 (ENSMUSG00000018620) #14	Mmp27 (ENSMUSG00000070323) #15	Mmp8 (ENSMUSG00000005800) #16	Mmp10 (ENSMUSG00000047562) #17	Mmp1a (ENSMUSG00000043089) #18	Mmp3 (ENSMUSG00000043613) #17	Mmp1b (ENSMUSG00000041620) #18	Mmp12 (ENSMUSG00000049723) #19	Mmp13 (ENSMUSG00000050578) #20	Dcun1d5 (ENSMUSG00000032002) #21	Dync2h1 (ENSMUSG00000047193) #22	Ddi1 (ENSMUSG00000047619) #24	Pdgfd (ENSMUSG00000032006) #23	Casp12 (ENSMUSG00000025887)	Casp4 (ENSMUSG00000033538) #27	Casp1 (ENSMUSG00000025888) #26	Gria4 (ENSMUSG00000025892)	Msantd4 (ENSMUSG00000041124)	Kbtbd3 (ENSMUSG00000025893)	Aasdhppt (ENSMUSG00000025894)	Gucy1a2 (ENSMUSG00000041624)	Cwf19l2 (ENSMUSG00000025898)	Alkbh8 (ENSMUSG00000025899)
Ryukyu mouse	MODERN SPECIES	18	Yap1 (MGP_CAROLIEiJ_G0031763) #9	MGP_CAROLIEiJ_G0031762 #10	MGP_CAROLIEiJ_G0031761 ##11	Tmem123 (MGP_CAROLIEiJ_G0031760) #12	Mmp7 (MGP_CAROLIEiJ_G0031759) #13	Mmp20 (MGP_CAROLIEiJ_G0031758) #14	Mmp27 (MGP_CAROLIEiJ_G0031757) #15	Mmp8 (MGP_CAROLIEiJ_G0031756) #16	Mmp10 (MGP_CAROLIEiJ_G0031755) #17	Mmp1a (MGP_CAROLIEiJ_G0031754) #18	Mmp1b (MGP_CAROLIEiJ_G0031753) #18	Mmp3 (MGP_CAROLIEiJ_G0031752) #17	Mmp12 (MGP_CAROLIEiJ_G0031751) #19	Mmp13 (MGP_CAROLIEiJ_G0031750) #20	MGP_CAROLIEiJ_G0031749 #21	Dync2h1 (MGP_CAROLIEiJ_G0031748) #22	Ddi1 (MGP_CAROLIEiJ_G0031747) #24	Pdgfd (MGP_CAROLIEiJ_G0031746) #23	Casp12 (MGP_CAROLIEiJ_G0031745)	Casp4 (MGP_CAROLIEiJ_G0031744) #27	Casp1 (MGP_CAROLIEiJ_G0031743) #26	Gria4 (MGP_CAROLIEiJ_G0031742)	Msantd4 (MGP_CAROLIEiJ_G0031741)	Kbtbd3 (MGP_CAROLIEiJ_G0031740)	Aasdhppt (MGP_CAROLIEiJ_G0031739)	Gucy1a2 (MGP_CAROLIEiJ_G0031738)	Cwf19l2 (MGP_CAROLIEiJ_G0031737)
Shrew mouse	MODERN SPECIES	1	Cfap300 (MGP_PahariEiJ_G0014642) #8	Yap1 (MGP_PahariEiJ_G0014641) #9	Birc3 (MGP_PahariEiJ_G0014640) #10	MGP_PahariEiJ_G0014639	Tmem123 (MGP_PahariEiJ_G0014638) #12	Mmp7 (MGP_PahariEiJ_G0014637) #13	Mmp20 (MGP_PahariEiJ_G0014636) #14	Mmp27 (MGP_PahariEiJ_G0014635) #15	Mmp8 (MGP_PahariEiJ_G0014634) #16	Mmp10 (MGP_PahariEiJ_G0014633) #17	Mmp3 (MGP_PahariEiJ_G0014632) #17	Mmp1b (MGP_PahariEiJ_G0014631) #18	Mmp12 (MGP_PahariEiJ_G0014630) #19	Mmp13 (MGP_PahariEiJ_G0014629) #20	MGP_PahariEiJ_G0014628 #21	Dync2h1 (MGP_PahariEiJ_G0014627) #22	Ddi1 (MGP_PahariEiJ_G0014626) #24	Pdgfd (MGP_PahariEiJ_G0014625) #23	MGP_PahariEiJ_G0014624	Casp4 (MGP_PahariEiJ_G0014623) #27	Casp1 (MGP_PahariEiJ_G0014622) #26	Gria4 (MGP_PahariEiJ_G0014621)	Msantd4 (MGP_PahariEiJ_G0014620)	Kbtbd3 (MGP_PahariEiJ_G0014619)	Aasdhppt (MGP_PahariEiJ_G0014618)	Gucy1a2 (MGP_PahariEiJ_G0014617)	Cwf19l2 (MGP_PahariEiJ_G0014616)	Alkbh8 (MGP_PahariEiJ_G0014615)
Rat	MODERN SPECIES	18	Yap1 (ENSRNOG00000005933) #9	Birc3 (ENSRNOG00000005731) #10	Birc2 (ENSRNOG00000010602) #11	Tmem123 (ENSRNOG00000010584) #12	Mmp7 (ENSRNOG00000010507) #13	Mmp20 (ENSRNOG00000021896) #14	Mmp27 (ENSRNOG00000040208) #15	Mmp8 (ENSRNOG00000009907) #16	Mmp10 (ENSRNOG00000032832) #17	Mmp1 (ENSRNOG00000032353) #18	Mmp3 (ENSRNOG00000032626) #17	Mmp1b (ENSRNOG00000008881) #18	Mmp12 (ENSRNOG00000030187) #19	Mmp13 (ENSRNOG00000008478) #20	Dcun1d5 (ENSRNOG00000008390) #21	Dync2h1 (ENSRNOG00000032070) #22	Ddi1 (ENSRNOG00000022081) #24	ENSRNOG00000065876	Pdgfd (ENSRNOG00000029148) #23	ENSRNOG00000066836	ENSRNOG00000069423	Casp12 (ENSRNOG00000033434)	Casp4 (ENSRNOG00000033697) #27	Casp1 (ENSRNOG00000007372) #26	Gria4 (ENSRNOG00000006957)	Msantd4 (ENSRNOG00000022245)	Kbtbd3 (ENSRNOG00000069206)	Aasdhppt (ENSRNOG00000005795)	ENSRNOG00000066855	AABR07068905.1 (ENSRNOG00000062096)	Gucy1a2 (ENSRNOG00000029876)
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759.h #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563
Cricetidae_B	ANCESTRAL SPECIES	58	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759.h #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563
Northern American deer mouse	MODERN SPECIES	20	Cfap300 (ENSPEMG00000021710) #8	Yap1 (ENSPEMG00000022927) #9	Birc3 (ENSPEMG00000020508) #10	Birc2 (ENSPEMG00000018476) #11	Tmem123 (ENSPEMG00000023085) #12	Mmp7 (ENSPEMG00000021337) #13	Mmp20 (ENSPEMG00000011175) #14	Mmp27 (ENSPEMG00000024216) #15	Mmp8 (ENSPEMG00000022864) #16	Mmp10 (ENSPEMG00000021262) #17	ENSPEMG00000020690 #18	Mmp3 (ENSPEMG00000020327) #17	Mmp12 (ENSPEMG00000020371) #19	Mmp13 (ENSPEMG00000011633) #20	Dcun1d5 (ENSPEMG00000020877) #21	Dync2h1 (ENSPEMG00000016383) #22	Pdgfd (ENSPEMG00000013246) #23	ENSPEMG00000028818	ENSPEMG00000021102	Casp12 (ENSPEMG00000022171)	ENSPEMG00000008389 #26	ENSPEMG00000026130 #26	ENSPEMG00000025268	ENSPEMG00000025774	Gria4 (ENSPEMG00000005300)	Msantd4 (ENSPEMG00000029468)	Kbtbd3 (ENSPEMG00000029070)	Aasdhppt (ENSPEMG00000016551)	ENSPEMG00000025699	Gucy1a2 (ENSPEMG00000021986)	Cwf19l2 (ENSPEMG00000022399)
Prairie vole	MODERN SPECIES	13	Cfap300 (ENSMOCG00000013197) #8	Yap1 (ENSMOCG00000007486) #9	Birc3 (ENSMOCG00000013964) #10	Birc2 (ENSMOCG00000010117) #11	Tmem123 (ENSMOCG00000021990) #12	Mmp7 (ENSMOCG00000021222) #13	Mmp20 (ENSMOCG00000019578) #14	Mmp27 (ENSMOCG00000018511) #15	Mmp8 (ENSMOCG00000009399) #16	ENSMOCG00000007239	ENSMOCG00000023030 #18	Mmp3 (ENSMOCG00000006156) #17	Mmp12 (ENSMOCG00000020347) #19	Mmp13 (ENSMOCG00000010248) #20	Dcun1d5 (ENSMOCG00000008925) #21	Dync2h1 (ENSMOCG00000017521) #22	Pdgfd (ENSMOCG00000014518) #23	Casp1 (ENSMOCG00000019444) #26	ENSMOCG00000004515	Gria4 (ENSMOCG00000011931)
Cricetinae	ANCESTRAL SPECIES	45	ENSGT01060000248588.a.d.a	ENSGT00390000013786 #7	ENSGT00510000047559 #8	ENSGT00510000046760.a #9	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759.h #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00950000182999.a.b #24	ENSGT00940000159575 #23	ENSGT00940000162555	ENSGT00940000159114 #26	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000156079	ENSGT00940000159308
Golden Hamster	MODERN SPECIES	688	Cntn5 (ENSMAUG00000012675)	Arhgap42 (ENSMAUG00000012529)	Pgr (ENSMAUG00000019127)	Trpc6 (ENSMAUG00000014533)	Cep126 (ENSMAUG00000013444) #7	Cfap300 (ENSMAUG00000011879) #8	Birc2 (ENSMAUG00000018063) #11	ENSMAUG00000016756 #17	Mmp20 (ENSMAUG00000011367) #14	Mmp27 (ENSMAUG00000000778) #15	ENSMAUG00000009988 #18	Mmp3 (ENSMAUG00000011335) #17	Mmp12 (ENSMAUG00000008249) #19	Mmp13 (ENSMAUG00000001270) #20	Dcun1d5 (ENSMAUG00000011071) #21	Dync2h1 (ENSMAUG00000015798) #22	Pdgfd (ENSMAUG00000012917) #23	Ddi1 (ENSMAUG00000016614) #24	Casp1 (ENSMAUG00000010193) #26	ENSMAUG00000016775	Msantd4 (ENSMAUG00000009891)	Kbtbd3 (ENSMAUG00000009346)	ENSMAUG00000008521	Gucy1a2 (ENSMAUG00000011689)	ENSMAUG00000008207	Or7g16 (ENSMAUG00000000891)	Or7g30 (ENSMAUG00000010230)	Or7g32 (ENSMAUG00000009330)	ENSMAUG00000007695	ENSMAUG00000012374	Or7d11 (ENSMAUG00000016586)
Chinese hamster chok1gshd	MODERN SPECIES	202	Birc3 (ENSCGRG00001008505) #10	Birc2 (ENSCGRG00001023266) #11	ENSCGRG00001022513	Tmem123 (ENSCGRG00001018797) #12	ENSCGRG00001015482 #20	Mmp20 (ENSCGRG00001000330) #14	Mmp27 (ENSCGRG00001021757) #15	Mmp8 (ENSCGRG00001015038) #16	ENSCGRG00001014094	ENSCGRG00001020530 #18	ENSCGRG00001009381	Mmp3 (ENSCGRG00001015501) #17	Mmp12 (ENSCGRG00001013053) #19	Mmp13 (ENSCGRG00001006492) #20	Dcun1d5 (ENSCGRG00001014535) #21	Dync2h1 (ENSCGRG00001013236) #22	Ddi1 (ENSCGRG00001005855) #24	Pdgfd (ENSCGRG00001019661) #23	ENSCGRG00001004505	Casp12 (ENSCGRG00001018352)	Casp1 (ENSCGRG00001009135) #26	Gria4 (ENSCGRG00001016770)	Msantd4 (ENSCGRG00001019387)	Kbtbd3 (ENSCGRG00001018771)	ENSCGRG00001018331	Gucy1a2 (ENSCGRG00001016426)	Cwf19l2 (ENSCGRG00001010585)	Alkbh8 (ENSCGRG00001011248)	Fam135b (ENSCGRG00001009898)	Col22a1 (ENSCGRG00001011324)	ENSCGRG00001022989
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00940000161966	ENSGT00390000013786 #7	ENSGT00940000154175.i.a #10	ENSGT00940000154175.i.b #11	ENSGT00530000063929.b #12	ENSGT00940000160903 #13	ENSGT00940000161277 #14	ENSGT00940000161159 #15	ENSGT00940000161871 #16	ENSGT00940000163375	ENSGT00940000154907.b #18	ENSGT00940000159759 #17	ENSGT00940000162085 #19	ENSGT00940000157450 #20	ENSGT00940000156155 #21	ENSGT00940000154620 #22	ENSGT00940000161497	ENSGT00940000159114 #26	ENSGT00940000162428.b #27	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000158563	ENSGT00390000008536	ENSGT00940000159782	ENSGT00390000015655.a	ENSGT00940000159933	ENSGT00940000156648	ENSGT01030000234626.E
Pika	DUPLICATION
Pika	DUPLICATION
Pika	MODERN SPECIES	2838															ENSOPRG00000007743 #21	ENSOPRG00000018732 #22	ENSOPRG00000010701 #22	ENSOPRG00000016082 #22
Pika	MODERN SPECIES	2838														ENSOPRG00000007743 #21	ENSOPRG00000018732 #22	ENSOPRG00000010701 #22	ENSOPRG00000016082 #22
Pika	MODERN SPECIES	2838													ENSOPRG00000007743 #21	ENSOPRG00000018732 #22	ENSOPRG00000010701 #22	ENSOPRG00000016082 #22
Rabbit	MODERN SPECIES		BIRC3 (ENSOCUG00000010109) #10	BIRC2 (ENSOCUG00000013890) #11	ENSOCUG00000006165 #12	MMP7 (ENSOCUG00000015329) #13	MMP20 (ENSOCUG00000002930) #14	MMP27 (ENSOCUG00000001090) #15	MMP8 (ENSOCUG00000001092) #16	MMP10 (ENSOCUG00000021775)	MMP1 (ENSOCUG00000017958) #18	MMP3 (ENSOCUG00000029337) #17	MMP12 (ENSOCUG00000008303) #19	ENSOCUG00000011333	ENSOCUG00000029729	MMP13 (ENSOCUG00000002481) #20	DCUN1D5 (ENSOCUG00000006512) #21	DYNC2H1 (ENSOCUG00000016257) #22	DDI1 (ENSOCUG00000015321) #24	PDGFD (ENSOCUG00000015312) #23	ENSOCUG00000007503	ENSOCUG00000001103 #26	ENSOCUG00000029247 #27	GRIA4 (ENSOCUG00000001089)	MSANTD4 (ENSOCUG00000022457)	KBTBD3 (ENSOCUG00000000230)	AASDHPPT (ENSOCUG00000000231)	ENSOCUG00000023190	ENSOCUG00000036599	GUCY1A2 (ENSOCUG00000004490)	ENSOCUG00000038405	CWF19L2 (ENSOCUG00000025398)	ELMOD1 (ENSOCUG00000011869)
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	4711																ENSTBEG00000009456 #22
Tree shrew	MODERN SPECIES	1791							MMP20 (ENSTBEG00000014473) #14	MMP27 (ENSTBEG00000015035) #15	MMP8 (ENSTBEG00000015520) #16	MMP10 (ENSTBEG00000016136)	MMP1 (ENSTBEG00000017080) #18	MMP3 (ENSTBEG00000017424) #17	MMP12 (ENSTBEG00000009604) #19	MMP13 (ENSTBEG00000009968) #20	DCUN1D5 (ENSTBEG00000010532) #21	ENSTBEG00000011130 #22