Sarcopterygii ANCESTRAL SPECIES 55 ENSGT00940000160903 #14 ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000154907.a.a ##19 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT00940000158415 #31 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000164873 ENSGT00390000002144 ENSGT00410000025596.a.b ENSGT00940000156761 Tetrapoda ANCESTRAL SPECIES ENSGT00940000155492.b ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000154907.b #19 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E ENSGT00390000012388 Amniota ANCESTRAL SPECIES ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E ENSGT00390000012388 Mammalia ANCESTRAL SPECIES 73 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000162428 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Theria ANCESTRAL SPECIES 15 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000166491 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000162428.b ENSGT00940000162555 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 Eutheria ANCESTRAL SPECIES 3 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT01100000263709 Boreoeutheria ANCESTRAL SPECIES 1 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00940000154175.j ##11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 Laurasiatheria ANCESTRAL SPECIES 1 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 Laurasiatheria_a ANCESTRAL SPECIES 1 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT01030000234886 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 Artiodactyla ANCESTRAL SPECIES 1 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT01040000240879 Artiodactyla_a ANCESTRAL SPECIES 1 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT01040000240879 Artiodactyla_b ANCESTRAL SPECIES 1 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719.a #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000155627 ENSGT00940000157765 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT01040000240879 Pecora ANCESTRAL SPECIES 7 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719.a #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00390000003919 #33 ENSGT00390000017288.b #34 ENSGT00940000154336.d #35 ENSGT00950000183144.A.j Percora_a ANCESTRAL SPECIES 6 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719.a #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00390000003919 #33 ENSGT00390000017288.b #34 ENSGT00940000154336.d #35 ENSGT00950000183144.A.j Bovidae ANCESTRAL SPECIES 6 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719.a #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000171276 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00390000003919 #33 ENSGT00390000017288.b #34 ENSGT00940000154336.d #35 ENSGT00950000183144.A.j ENSGT00940000154976.p.b.b ##37 ENSGT00940000154261.q.b.a.a Caprinae ANCESTRAL SPECIES 6 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000171276 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT01030000234886 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00390000003919 #33 ENSGT00390000017288.b #34 ENSGT00940000154336.d #35 ENSGT00950000183144.A.j ENSGT00940000154976.p.a #37 Rambouillet Sheep MODERN SPECIES 6 TRPC6 (ENSOARG00020021734) #7 ANGPTL5 (ENSOARG00020021669) #8 CFAP300 (ENSOARG00020021370) #9 YAP1 (ENSOARG00020020483) #10 BIRC3 (ENSOARG00020020405) #11 ENSOARG00020020385 #12 BIRC2 (ENSOARG00020020262) #13 MMP7 (ENSOARG00020020219) #14 MMP7 (ENSOARG00020020127) #15 MMP20 (ENSOARG00020020039) #16 MMP27 (ENSOARG00020020000) #17 MMP8 (ENSOARG00020019912) #18 MMP1 (ENSOARG00020019819) #19 MMP12 (ENSOARG00020019763) #20 DCUN1D5 (ENSOARG00020019585) #21 DYNC2H1 (ENSOARG00020014518) #22 DDI1 (ENSOARG00020014392) #23 PDGFD (ENSOARG00020014159) #24 ENSOARG00020014135 #25 ENSOARG00020013177 #26 ENSOARG00020013115 #27 ENSOARG00020013091 #28 GRIA4 (ENSOARG00020012341) #29 MSANTD4 (ENSOARG00020012278) #30 KBTBD3 (ENSOARG00020012182) #31 AASDHPPT (ENSOARG00020012064) #32 ANKRD49 (ENSOARG00020012037) #33 MRE11 (ENSOARG00020011913) #34 GPR83 (ENSOARG00020011841) #35 ENSOARG00020011815 #36 OR4C16 (ENSOARG00020011729) #37 Goat MODERN SPECIES 6 YAP1 (ENSCHIG00000017090) #10 ENSCHIG00000023994 ENSCHIG00000018499 BIRC3 (ENSCHIG00000012208) #11 BIRC2 (ENSCHIG00000017347) #13 ENSCHIG00000013361 MMP7 (ENSCHIG00000026468) #14 MMP20 (ENSCHIG00000026359) #16 MMP27 (ENSCHIG00000012641) #17 MMP8 (ENSCHIG00000026968) #18 MMP1 (ENSCHIG00000010427) #19 MMP3 (ENSCHIG00000022679) MMP12 (ENSCHIG00000026649) #20 MMP13 (ENSCHIG00000021039) DCUN1D5 (ENSCHIG00000021271) #21 DYNC2H1 (ENSCHIG00000017543) #22 PDGFD (ENSCHIG00000006770) #24 DDI1 (ENSCHIG00000007991) #23 ENSCHIG00000008146 ENSCHIG00000023433 #26 ENSCHIG00000013458 ENSCHIG00000020857 ENSCHIG00000009053 ENSCHIG00000019889 #29 ENSCHIG00000022465 #29 MSANTD4 (ENSCHIG00000021603) #30 ENSCHIG00000013896 #30 KBTBD3 (ENSCHIG00000012819) #31 AASDHPPT (ENSCHIG00000017726) #32 ANKRD49 (ENSCHIG00000015614) #33 MRE11 (ENSCHIG00000021669) #34 Bovinae ANCESTRAL SPECIES 21 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719.a #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000171276 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00390000003919 #33 ENSGT00390000017288.b #34 ENSGT00940000154336.d #35 ENSGT00950000183144.A.j ENSGT00940000158647.g.a.c ENSGT00900000141017.c.b.b Bos ANCESTRAL SPECIES 20 ENSGT01100000263481.n.a.b.a.b.a.b.a.b.a.a.a.b ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b.l #13 ENSGT00910000147719.a #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000163552.a.b.b.a ENSGT00940000171276 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415.f #31 ENSGT00390000004663.k #32 ENSGT00390000004663.l #32 ENSGT00390000003919 #33 ENSGT00390000017288.b #34 ENSGT00940000154336.d #35 ENSGT00950000183144.A.j Bos_a ANCESTRAL SPECIES 15 ENSGT01100000263481.n.a.b.a.b.a.b.a.b.a.a.a.b ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b.l #13 ENSGT00910000147719.a #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000163552.a.b.b.a ENSGT00940000171276 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415.f #31 ENSGT00390000004663.k #32 ENSGT00390000003919 #33 ENSGT00390000017288.b #34 ENSGT00940000154336.d #35 Domestic yak MODERN SPECIES 4 ENSBGRG00000016649 BIRC3 (ENSBGRG00000016714) #11 ENSBGRG00000016826 #13 ENSBGRG00000017104 #12 ENSBGRG00000017169 MMP7 (ENSBGRG00000017747) #14 MMP20 (ENSBGRG00000017827) #16 MMP27 (ENSBGRG00000017957) #17 MMP8 (ENSBGRG00000018057) #18 ENSBGRG00000018167 #19 MMP1 (ENSBGRG00000018480) #19 MMP3 (ENSBGRG00000018711) MMP12 (ENSBGRG00000018771) #20 MMP13 (ENSBGRG00000018832) DCUN1D5 (ENSBGRG00000018907) #21 DYNC2H1 (ENSBGRG00000019097) #22 ENSBGRG00000020346 PDGFD (ENSBGRG00000020375) #24 DDI1 (ENSBGRG00000020479) #23 ENSBGRG00000020487 ENSBGRG00000020511 ENSBGRG00000020533 #26 ENSBGRG00000020667 GRIA4 (ENSBGRG00000020983) #29 MSANTD4 (ENSBGRG00000021125) #30 KBTBD3 (ENSBGRG00000021150) #31 ENSBGRG00000021208 #32 ANKRD49 (ENSBGRG00000021288) #33 MRE11 (ENSBGRG00000021342) #34 IZUMO1R (ENSBGRG00000021756) ENSBGRG00000021894 Wild yak MODERN SPECIES 115 DCUN1D5 (ENSBMUG00000011697) #21 DYNC2H1 (ENSBMUG00000012095) #22 CDH6 (ENSBMUG00000012474) DROSHA (ENSBMUG00000012602) C5orf22 (ENSBMUG00000012660) ENSBMUG00000012666 ENSBMUG00000012684 PDZD2 (ENSBMUG00000012698) ENSBMUG00000012710 MTMR12 (ENSBMUG00000012798) ENSBMUG00000012835 ENSBMUG00000012841 Bos_b ANCESTRAL SPECIES 19 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b.l.a #13 ENSGT00910000147719.a #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b.kb #19 ENSGT00940000154907.b.lb #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000163552.a.b.b.a ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000174020.a.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415.f #31 ENSGT00390000004663.k #32 ENSGT00390000004663.l #32 ENSGT00390000003919 #33 ENSGT00390000017288.b #34 ENSGT00940000154336.d #35 ENSGT00950000183144.A.j Cow DUPLICATION Cow DUPLICATION Cow MODERN SPECIES 6 BIRC3 (ENSBTAG00000024918) #11 BIRC2 (ENSBTAG00000035735) #13 ENSBTAG00000052956 #12 ENSBTAG00000049233 MMP7 (ENSBTAG00000004594) #14 MMP20 (ENSBTAG00000014251) #16 MMP27 (ENSBTAG00000040567) #17 MMP8 (ENSBTAG00000046732) #18 ENSBTAG00000015818 #19 MMP1 (ENSBTAG00000048029) #19 MMP3 (ENSBTAG00000037768) MMP12 (ENSBTAG00000053542) #20 MMP13 (ENSBTAG00000015059) ENSBTAG00000050505 DCUN1D5 (ENSBTAG00000003087) #21 ENSBTAG00000019309 #22 ENSBTAG00000048939 #22 ENSBTAG00000047461 #22 ENSBTAG00000051741 ENSBTAG00000049312 DDI1 (ENSBTAG00000002887) #23 PDGFD (ENSBTAG00000034827) #24 ENSBTAG00000052675 ENSBTAG00000051613 ENSBTAG00000053811 CASP4 (ENSBTAG00000020884) #26 CASP1 (ENSBTAG00000050239) ENSBTAG00000055258 GRIA4 (ENSBTAG00000006176) #29 MSANTD4 (ENSBTAG00000023989) #30 KBTBD3 (ENSBTAG00000005392) #31 Cow MODERN SPECIES 6 ENSBTAG00000052956 #12 ENSBTAG00000049233 MMP7 (ENSBTAG00000004594) #14 MMP20 (ENSBTAG00000014251) #16 MMP27 (ENSBTAG00000040567) #17 MMP8 (ENSBTAG00000046732) #18 ENSBTAG00000015818 #19 MMP1 (ENSBTAG00000048029) #19 MMP3 (ENSBTAG00000037768) MMP12 (ENSBTAG00000053542) #20 MMP13 (ENSBTAG00000015059) ENSBTAG00000050505 DCUN1D5 (ENSBTAG00000003087) #21 ENSBTAG00000019309 #22 ENSBTAG00000048939 #22 ENSBTAG00000047461 #22 ENSBTAG00000051741 ENSBTAG00000049312 DDI1 (ENSBTAG00000002887) #23 PDGFD (ENSBTAG00000034827) #24 ENSBTAG00000052675 ENSBTAG00000051613 ENSBTAG00000053811 CASP4 (ENSBTAG00000020884) #26 CASP1 (ENSBTAG00000050239) ENSBTAG00000055258 GRIA4 (ENSBTAG00000006176) #29 MSANTD4 (ENSBTAG00000023989) #30 KBTBD3 (ENSBTAG00000005392) #31 AASDHPPT (ENSBTAG00000012279) #32 ANKRD49 (ENSBTAG00000009176) #33 Cow MODERN SPECIES 6 BIRC2 (ENSBTAG00000035735) #13 ENSBTAG00000052956 #12 ENSBTAG00000049233 MMP7 (ENSBTAG00000004594) #14 MMP20 (ENSBTAG00000014251) #16 MMP27 (ENSBTAG00000040567) #17 MMP8 (ENSBTAG00000046732) #18 ENSBTAG00000015818 #19 MMP1 (ENSBTAG00000048029) #19 MMP3 (ENSBTAG00000037768) MMP12 (ENSBTAG00000053542) #20 MMP13 (ENSBTAG00000015059) ENSBTAG00000050505 DCUN1D5 (ENSBTAG00000003087) #21 ENSBTAG00000019309 #22 ENSBTAG00000048939 #22 ENSBTAG00000047461 #22 ENSBTAG00000051741 ENSBTAG00000049312 DDI1 (ENSBTAG00000002887) #23 PDGFD (ENSBTAG00000034827) #24 ENSBTAG00000052675 ENSBTAG00000051613 ENSBTAG00000053811 CASP4 (ENSBTAG00000020884) #26 CASP1 (ENSBTAG00000050239) ENSBTAG00000055258 GRIA4 (ENSBTAG00000006176) #29 MSANTD4 (ENSBTAG00000023989) #30 KBTBD3 (ENSBTAG00000005392) #31 AASDHPPT (ENSBTAG00000012279) #32 Hybrid Bos Indicus MODERN SPECIES 6 BIRC3 (ENSBIXG00005002521) #11 ENSBIXG00005015904 #13 ENSBIXG00005015835 ENSBIXG00005015827 MMP7 (ENSBIXG00005015796) #14 MMP20 (ENSBIXG00005015765) #16 MMP27 (ENSBIXG00005007505) #17 MMP8 (ENSBIXG00005015697) #18 ENSBIXG00005015654 #19 ENSBIXG00005002351 #19 MMP3 (ENSBIXG00005015577) MMP12 (ENSBIXG00005015572) #20 MMP13 (ENSBIXG00005015552) ENSBIXG00005007135 DCUN1D5 (ENSBIXG00005015519) #21 DYNC2H1 (ENSBIXG00005006562) #22 PDGFD (ENSBIXG00005015295) #24 DDI1 (ENSBIXG00005015259) #23 ENSBIXG00005005639 ENSBIXG00005015227 #26 ENSBIXG00005015170 ENSBIXG00005002205 ENSBIXG00005015044 GRIA4 (ENSBIXG00005014996) #29 MSANTD4 (ENSBIXG00005014916) #30 KBTBD3 (ENSBIXG00005014892) #31 AASDHPPT (ENSBIXG00005014858) #32 ENSBIXG00005014848 ANKRD49 (ENSBIXG00005014841) #33 MRE11 (ENSBIXG00005014792) #34 ENSBIXG00005014538 American bison MODERN SPECIES 3035 MMP1 (ENSBBBG00000005557) #19 MMP3 (ENSBBBG00000008782) MMP12 (ENSBBBG00000020578) #20 MMP13 (ENSBBBG00000020565) DCUN1D5 (ENSBBBG00000007470) #21 DYNC2H1 (ENSBBBG00000020480) #22 PDGFD (ENSBBBG00000007015) #24 DDI1 (ENSBBBG00000005435) #23 Siberian musk deer MODERN SPECIES 1172 YAP1 (ENSMMSG00000019446) #10 ENSMMSG00000020213 ENSMMSG00000020239 #11 ENSMMSG00000020291 #13 ENSMMSG00000020342 #12 ENSMMSG00000020366 MMP7 (ENSMMSG00000020500) #14 MMP20 (ENSMMSG00000020524) #16 MMP27 (ENSMMSG00000020593) #17 MMP8 (ENSMMSG00000020627) #18 MMP1 (ENSMMSG00000020664) #19 MMP3 (ENSMMSG00000020691) MMP12 (ENSMMSG00000020713) #20 MMP13 (ENSMMSG00000020775) DCUN1D5 (ENSMMSG00000020795) #21 DYNC2H1 (ENSMMSG00000020899) #22 ENSMMSG00000008190 ENSMMSG00000008228 ENSMMSG00000008237 PDGFD (ENSMMSG00000008276) #24 DDI1 (ENSMMSG00000008336) #23 ENSMMSG00000008366 #26 ENSMMSG00000008496 GRIA4 (ENSMMSG00000008872) #29 ENSMMSG00000008975 #30 KBTBD3 (ENSMMSG00000009059) #31 AASDHPPT (ENSMMSG00000009083) #32 ANKRD49 (ENSMMSG00000009101) #33 ENSMMSG00000009157 ##34 GPR83 (ENSMMSG00000009714) #35 IZUMO1R (ENSMMSG00000009745) Yarkand deer MODERN SPECIES YAP1 (ENSCHYG00000000950) #10 BIRC3 (ENSCHYG00000000926) #11 BIRC2 (ENSCHYG00000000902) #13 ENSCHYG00000000892 #12 TMEM123 (ENSCHYG00000000870) MMP7 (ENSCHYG00000000857) #14 MMP20 (ENSCHYG00000000837) #16 MMP27 (ENSCHYG00000000792) #17 MMP8 (ENSCHYG00000000770) #18 ENSCHYG00000000747 #19 MMP1 (ENSCHYG00000000723) #19 MMP3 (ENSCHYG00000000701) MMP12 (ENSCHYG00000000688) #20 MMP13 (ENSCHYG00000000652) DCUN1D5 (ENSCHYG00000000628) #21 DYNC2H1 (ENSCHYG00000000537) #22 DDI1 (ENSCHYG00000000457) #23 PDGFD (ENSCHYG00000000341) #24 ENSCHYG00000000233 ENSCHYG00000000211 #26 ENSCHYG00000000171 ENSCHYG00000000131 GRIA4 (ENSCHYG00000000113) #29 MSANTD4 (ENSCHYG00000000065) #30 KBTBD3 (ENSCHYG00000000060) #31 ENSCHYG00000000056 #32 ANKRD49 (ENSCHYG00000000041) #33 MRE11 (ENSCHYG00000000023) ##34 GPR83 (ENSCHYG00000000012) #35 IZUMO1R (ENSCHYG00000000006) Cetacea ANCESTRAL SPECIES 4 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000155627 ENSGT00940000157765 ENSGT00940000158563 ENSGT00940000159782 ENSGT01040000240879 ENSGT00390000015655.a Odontoceti ANCESTRAL SPECIES 4 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000155627 ENSGT00940000157765 ENSGT00940000158563 ENSGT00940000159782 ENSGT01040000240879 ENSGT00390000015655.a Odontoceti_a ANCESTRAL SPECIES 4 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000155627 ENSGT00940000157765 ENSGT00940000158563 ENSGT00940000159782 ENSGT01040000240879 ENSGT00390000015655.a Odontoceti_b ANCESTRAL SPECIES 4 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00390000015164.v.a.a ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000155627 ENSGT00950000182878.b.b.k.a.a ENSGT00940000157765 ENSGT00940000158563 ENSGT00940000159782 ENSGT01040000240879 Monodontidae ANCESTRAL SPECIES 2 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00390000015164.v.a.a ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT01010000222906.b.b.b ENSGT00390000005568.fb.l.b.a ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000155627 ENSGT00950000182878.b.b.k.a.a ENSGT00940000157765 ENSGT00940000158563 Beluga whale MODERN SPECIES 75 MMP20 (ENSDLEG00000012733) #16 MMP27 (ENSDLEG00000012775) #17 MMP8 (ENSDLEG00000012801) #18 MMP1 (ENSDLEG00000012823) #19 MMP3 (ENSDLEG00000012844) MMP13 (ENSDLEG00000012870) DCUN1D5 (ENSDLEG00000012915) #21 DYNC2H1 (ENSDLEG00000013026) #22 ENSDLEG00000014217 ENSDLEG00000014223 PDGFD (ENSDLEG00000014235) #24 DDI1 (ENSDLEG00000014267) #23 ENSDLEG00000014270 ENSDLEG00000014313 #26 CASP1 (ENSDLEG00000014328) GRIA4 (ENSDLEG00000014352) #29 MSANTD4 (ENSDLEG00000014424) #30 KBTBD3 (ENSDLEG00000014428) #31 AASDHPPT (ENSDLEG00000014433) #32 CWF19L2 (ENSDLEG00000014450) GUCY1A2 (ENSDLEG00000014519) Narwhal MODERN SPECIES 314 BIRC3 (ENSMMNG00015017985) #11 BIRC2 (ENSMMNG00015017921) #13 ENSMMNG00015017889 TMEM123 (ENSMMNG00015017867) MMP7 (ENSMMNG00015017833) #14 ENSMMNG00015017789 ENSMMNG00015017752 FOLH1 (ENSMMNG00015016426) MMP20 (ENSMMNG00015016079) #16 MMP27 (ENSMMNG00015016013) #17 MMP8 (ENSMMNG00015015954) #18 MMP1 (ENSMMNG00015015906) #19 MMP3 (ENSMMNG00015015864) MMP13 (ENSMMNG00015015808) DCUN1D5 (ENSMMNG00015015752) #21 DYNC2H1 (ENSMMNG00015015422) #22 ENSMMNG00015015371 DDI1 (ENSMMNG00015015358) #23 PDGFD (ENSMMNG00015015343) #24 CASP12 (ENSMMNG00015015330) ENSMMNG00015015306 #26 ENSMMNG00015015191 ENSMMNG00015015127 GRIA4 (ENSMMNG00015015040) #29 MSANTD4 (ENSMMNG00015014999) #30 KBTBD3 (ENSMMNG00015014990) #31 AASDHPPT (ENSMMNG00015014982) #32 CWF19L2 (ENSMMNG00015014936) ENSMMNG00015014920 GUCY1A2 (ENSMMNG00015014900) ALKBH8 (ENSMMNG00015014868) Vaquita MODERN SPECIES 19 ENSPSNG00000012784 ENSPSNG00000012743 FOLH1 (ENSPSNG00000012683) ENSPSNG00000012601 ENSPSNG00000012185 ENSPSNG00000012055 ENSPSNG00000012017 MMP20 (ENSPSNG00000011898) #16 MMP27 (ENSPSNG00000011758) #17 MMP8 (ENSPSNG00000011640) #18 MMP1 (ENSPSNG00000011516) #19 MMP3 (ENSPSNG00000011464) ENSPSNG00000011394 MMP13 (ENSPSNG00000011272) DCUN1D5 (ENSPSNG00000011176) #21 ENSPSNG00000011129 #22 ENSPSNG00000011106 DDI1 (ENSPSNG00000011079) #23 PDGFD (ENSPSNG00000011015) #24 ENSPSNG00000010961 ENSPSNG00000010712 #26 ENSPSNG00000010097 ENSPSNG00000009923 ENSPSNG00000009900 GRIA4 (ENSPSNG00000009480) #29 MSANTD4 (ENSPSNG00000009351) #30 KBTBD3 (ENSPSNG00000009333) #31 AASDHPPT (ENSPSNG00000009261) #32 CWF19L2 (ENSPSNG00000009225) ENSPSNG00000009179 GUCY1A2 (ENSPSNG00000009108) Dolphin MODERN SPECIES 2448 ENSTTRG00000009305 #22 Sperm whale MODERN SPECIES 7 CEP126 (ENSPCTG00005008482) CFAP300 (ENSPCTG00005008410) #9 YAP1 (ENSPCTG00005008267) #10 BIRC3 (ENSPCTG00005008131) #13 TMEM123 (ENSPCTG00005008095) ENSPCTG00005008079 MMP7 (ENSPCTG00005008052) #14 ENSPCTG00005008033 MMP20 (ENSPCTG00005007995) #16 MMP27 (ENSPCTG00005007950) #17 MMP8 (ENSPCTG00005007904) #18 MMP1 (ENSPCTG00005007864) #19 MMP3 (ENSPCTG00005007829) MMP13 (ENSPCTG00005007790) DCUN1D5 (ENSPCTG00005007734) #21 DYNC2H1 (ENSPCTG00005007602) #22 DDI1 (ENSPCTG00005007507) #23 PDGFD (ENSPCTG00005007471) #24 ENSPCTG00005007398 #26 CASP1 (ENSPCTG00005006753) ENSPCTG00005006571 GRIA4 (ENSPCTG00005006290) #29 MSANTD4 (ENSPCTG00005006230) #30 KBTBD3 (ENSPCTG00005006219) #31 AASDHPPT (ENSPCTG00005006202) #32 CWF19L2 (ENSPCTG00005006064) GUCY1A2 (ENSPCTG00005005964) ENSPCTG00005005948 ALKBH8 (ENSPCTG00005005892) ELMOD1 (ENSPCTG00005005706) ENSPCTG00005005666 Blue whale MODERN SPECIES 19 CFAP300 (ENSBMSG00010007148) #9 YAP1 (ENSBMSG00010007087) #10 BIRC3 (ENSBMSG00010007044) #11 BIRC2 (ENSBMSG00010007026) #13 ENSBMSG00010006981 MMP7 (ENSBMSG00010006965) #14 ENSBMSG00010006936 MMP20 (ENSBMSG00010006883) #16 MMP27 (ENSBMSG00010006850) #17 MMP8 (ENSBMSG00010006829) #18 MMP1 (ENSBMSG00010006797) #19 MMP3 (ENSBMSG00010006771) MMP13 (ENSBMSG00010006744) DCUN1D5 (ENSBMSG00010006711) #21 ENSBMSG00010006692 DYNC2H1 (ENSBMSG00010006610) #22 ENSBMSG00010006519 ENSBMSG00010006513 ENSBMSG00010006504 DDI1 (ENSBMSG00010006488) #23 PDGFD (ENSBMSG00010006472) #24 CASP12 (ENSBMSG00010006435) ENSBMSG00010006394 #26 ENSBMSG00010006210 ENSBMSG00010006162 ENSBMSG00010007668 MSANTD4 (ENSBMSG00010007664) #30 KBTBD3 (ENSBMSG00010007657) #31 AASDHPPT (ENSBMSG00010007644) #32 CWF19L2 (ENSBMSG00010007631) ENSBMSG00010007615 Camelidae DUPLICATION Camelidae ANCESTRAL SPECIES ENSGT00940000154620.lb #22 Arabian camel DUPLICATION Arabian camel MODERN SPECIES 174 ENSCDRG00005011135 #22 Arabian camel MODERN SPECIES 186 ENSCDRG00005007557 #22 Camelidae ANCESTRAL SPECIES 32 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620.mb #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 Arabian camel MODERN SPECIES 1 CFAP300 (ENSCDRG00005001024) #9 YAP1 (ENSCDRG00005001090) #10 BIRC3 (ENSCDRG00005001220) #11 BIRC2 (ENSCDRG00005001258) #13 ENSCDRG00005001278 #12 ENSCDRG00005001282 MMP7 (ENSCDRG00005001294) #14 MMP20 (ENSCDRG00005001309) #16 MMP27 (ENSCDRG00005001340) #17 MMP8 (ENSCDRG00005001367) #18 MMP1 (ENSCDRG00005001400) #19 MMP3 (ENSCDRG00005001425) MMP12 (ENSCDRG00005001447) #20 MMP13 (ENSCDRG00005001466) DCUN1D5 (ENSCDRG00005001503) #21 DYNC2H1 (ENSCDRG00005001586) #22 PDGFD (ENSCDRG00005001697) #24 DDI1 (ENSCDRG00005001731) #23 ENSCDRG00005001740 #26 ENSCDRG00005001784 GRIA4 (ENSCDRG00005001949) #29 MSANTD4 (ENSCDRG00005002065) #30 KBTBD3 (ENSCDRG00005002074) #31 AASDHPPT (ENSCDRG00005002082) #32 ENSCDRG00005002094 Alpaca MODERN SPECIES 659 DCUN1D5 (ENSVPAG00000011347) #21 ENSVPAG00000011348 #22 Suina ANCESTRAL SPECIES 5 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00910000148412 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01040000240879 ENSGT00390000015655.a Pig MODERN SPECIES 17 CFAP300 (ENSSSCG00000014980) #9 YAP1 (ENSSSCG00000031429) #10 BIRC3 (ENSSSCG00000027529) #11 BIRC2 (ENSSSCG00000063374) #13 ENSSSCG00000031170 MMP7 (ENSSSCG00000014982) #14 MMP20 (ENSSSCG00000014983) #16 MMP27 (ENSSSCG00000014984) #17 MMP8 (ENSSSCG00000029675) #18 MMP1 (ENSSSCG00000014985) #19 MMP3 (ENSSSCG00000059078) MMP12 (ENSSSCG00000014987) #20 MMP13 (ENSSSCG00000014988) ENSSSCG00000035427 DCUN1D5 (ENSSSCG00000014989) #21 DYNC2H1 (ENSSSCG00000033937) #22 PDGFD (ENSSSCG00000014994) #24 DDI1 (ENSSSCG00000014995) #23 ENSSSCG00000032358 ENSSSCG00000014996 ENSSSCG00000014997 #26 CASP1 (ENSSSCG00000028711) ENSSSCG00000037097 GRIA4 (ENSSSCG00000030565) #29 MSANTD4 (ENSSSCG00000026833) #30 AASDHPPT (ENSSSCG00000014998) #32 KBTBD3 (ENSSSCG00000014999) #31 CWF19L2 (ENSSSCG00000028201) ENSSSCG00000056752 ALKBH8 (ENSSSCG00000024628) ELMOD1 (ENSSSCG00000015002) Chacoan peccary MODERN SPECIES 29 YAP1 (ENSCWAG00000000439) #10 BIRC3 (ENSCWAG00000000395) #11 BIRC2 (ENSCWAG00000000357) #13 ENSCWAG00000000343 #12 TMEM123 (ENSCWAG00000000329) MMP7 (ENSCWAG00000000312) #14 MMP20 (ENSCWAG00000000288) #16 MMP27 (ENSCWAG00000000250) #17 MMP8 (ENSCWAG00000000204) #18 ENSCWAG00000000098 #19 MMP1 (ENSCWAG00000009665) #19 MMP3 (ENSCWAG00000009566) MMP12 (ENSCWAG00000009480) #20 MMP13 (ENSCWAG00000009364) DCUN1D5 (ENSCWAG00000009255) #21 DYNC2H1 (ENSCWAG00000007039) #22 DDI1 (ENSCWAG00000006891) #23 PDGFD (ENSCWAG00000006820) #24 ENSCWAG00000006786 ENSCWAG00000006740 #26 ENSCWAG00000006028 GRIA4 (ENSCWAG00000005641) #29 MSANTD4 (ENSCWAG00000005595) #30 KBTBD3 (ENSCWAG00000005570) #31 AASDHPPT (ENSCWAG00000005548) #32 CWF19L2 (ENSCWAG00000005525) ALKBH8 (ENSCWAG00000005467) ELMOD1 (ENSCWAG00000005287) ENSCWAG00000005234 SLC35F2 (ENSCWAG00000005147) RAB39A (ENSCWAG00000005118) Laurasiatheria_b ANCESTRAL SPECIES 1 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00390000008536 Laurasiatheria_c ANCESTRAL SPECIES 23 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00390000008536 ENSGT00940000159782 Chiroptera ANCESTRAL SPECIES 33 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000015352.n ENSGT00940000155627 ENSGT00940000158563 ENSGT00390000008536 Microchiroptera ANCESTRAL SPECIES 34 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000015352.n ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 Greater horseshoe bat MODERN SPECIES 2 BIRC2 (ENSRFEG00010006459) #13 ENSRFEG00010006526 ENSRFEG00010006546 ENSRFEG00010006590 MMP7 (ENSRFEG00010006603) #14 MMP20 (ENSRFEG00010006633) #16 MMP27 (ENSRFEG00010006694) #17 MMP8 (ENSRFEG00010006863) #18 MMP10 (ENSRFEG00010007505) MMP1 (ENSRFEG00010007604) #19 MMP3 (ENSRFEG00010007645) MMP12 (ENSRFEG00010007757) #20 ENSRFEG00010007869 MMP13 (ENSRFEG00010007911) DCUN1D5 (ENSRFEG00010008035) #21 DYNC2H1 (ENSRFEG00010008170) #22 ENSRFEG00010008309 PDGFD (ENSRFEG00010008344) #24 ENSRFEG00010008414 DDI1 (ENSRFEG00010008434) #23 ENSRFEG00010008449 ENSRFEG00010008486 ENSRFEG00010008552 #26 ENSRFEG00010008674 ENSRFEG00010008776 ENSRFEG00010008796 GRIA4 (ENSRFEG00010008848) #29 MSANTD4 (ENSRFEG00010008997) #30 KBTBD3 (ENSRFEG00010009026) #31 AASDHPPT (ENSRFEG00010009049) #32 ENSRFEG00010009091 Microbat MODERN SPECIES 1054 PIH1D2 (ENSMLUG00000012219) NKAPD1 (ENSMLUG00000024705) TIMM8B (ENSMLUG00000012225) SDHD (ENSMLUG00000012228) ENSMLUG00000027380 TEX12 (ENSMLUG00000017694) BCO2 (ENSMLUG00000017695) PTS (ENSMLUG00000023388) ENSMLUG00000009366 ENSMLUG00000027294 NCAM1 (ENSMLUG00000011838) TTC12 (ENSMLUG00000011854) ANKK1 (ENSMLUG00000011881) DRD2 (ENSMLUG00000011890) ZW10 (ENSMLUG00000014203) DYNC2H1 (ENSMLUG00000003216) #22 PDGFD (ENSMLUG00000011003) #24 DDI1 (ENSMLUG00000014443) #23 Megabat MODERN SPECIES 2900 ENSPVAG00000007495 #22 Equus ANCESTRAL SPECIES 25 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162555 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 Donkey DUPLICATION Donkey DUPLICATION Donkey MODERN SPECIES 12 CEP126 (ENSEASG00005011151) CFAP300 (ENSEASG00005031746) #9 YAP1 (ENSEASG00005011146) #10 BIRC3 (ENSEASG00005011145) #11 BIRC2 (ENSEASG00005011141) #13 TMEM123 (ENSEASG00005011137) MMP7 (ENSEASG00005011134) #14 MMP20 (ENSEASG00005011128) #16 MMP27 (ENSEASG00005011124) #17 MMP8 (ENSEASG00005011052) #18 MMP1 (ENSEASG00005011048) #19 MMP3 (ENSEASG00005011047) MMP12 (ENSEASG00005011046) #20 MMP13 (ENSEASG00005011044) ENSEASG00005011043 #21 ENSEASG00005011042 #22 ENSEASG00005030689 #22 ENSEASG00005011036 #22 DDI1 (ENSEASG00005011033) #23 PDGFD (ENSEASG00005011032) #24 ENSEASG00005011031 ENSEASG00005011030 #26 ENSEASG00005011029 ENSEASG00005026662 ENSEASG00005011027 GRIA4 (ENSEASG00005011024) #29 MSANTD4 (ENSEASG00005011020) #30 KBTBD3 (ENSEASG00005011019) #31 AASDHPPT (ENSEASG00005011016) #32 GUCY1A2 (ENSEASG00005011012) CWF19L2 (ENSEASG00005011011) Donkey MODERN SPECIES 12 YAP1 (ENSEASG00005011146) #10 BIRC3 (ENSEASG00005011145) #11 BIRC2 (ENSEASG00005011141) #13 TMEM123 (ENSEASG00005011137) MMP7 (ENSEASG00005011134) #14 MMP20 (ENSEASG00005011128) #16 MMP27 (ENSEASG00005011124) #17 MMP8 (ENSEASG00005011052) #18 MMP1 (ENSEASG00005011048) #19 MMP3 (ENSEASG00005011047) MMP12 (ENSEASG00005011046) #20 MMP13 (ENSEASG00005011044) ENSEASG00005011043 #21 ENSEASG00005011042 #22 ENSEASG00005030689 #22 ENSEASG00005011036 #22 DDI1 (ENSEASG00005011033) #23 PDGFD (ENSEASG00005011032) #24 ENSEASG00005011031 ENSEASG00005011030 #26 ENSEASG00005011029 ENSEASG00005026662 ENSEASG00005011027 GRIA4 (ENSEASG00005011024) #29 MSANTD4 (ENSEASG00005011020) #30 KBTBD3 (ENSEASG00005011019) #31 AASDHPPT (ENSEASG00005011016) #32 GUCY1A2 (ENSEASG00005011012) CWF19L2 (ENSEASG00005011011) ALKBH8 (ENSEASG00005011010) ELMOD1 (ENSEASG00005011008) Donkey MODERN SPECIES 12 CFAP300 (ENSEASG00005031746) #9 YAP1 (ENSEASG00005011146) #10 BIRC3 (ENSEASG00005011145) #11 BIRC2 (ENSEASG00005011141) #13 TMEM123 (ENSEASG00005011137) MMP7 (ENSEASG00005011134) #14 MMP20 (ENSEASG00005011128) #16 MMP27 (ENSEASG00005011124) #17 MMP8 (ENSEASG00005011052) #18 MMP1 (ENSEASG00005011048) #19 MMP3 (ENSEASG00005011047) MMP12 (ENSEASG00005011046) #20 MMP13 (ENSEASG00005011044) ENSEASG00005011043 #21 ENSEASG00005011042 #22 ENSEASG00005030689 #22 ENSEASG00005011036 #22 DDI1 (ENSEASG00005011033) #23 PDGFD (ENSEASG00005011032) #24 ENSEASG00005011031 ENSEASG00005011030 #26 ENSEASG00005011029 ENSEASG00005026662 ENSEASG00005011027 GRIA4 (ENSEASG00005011024) #29 MSANTD4 (ENSEASG00005011020) #30 KBTBD3 (ENSEASG00005011019) #31 AASDHPPT (ENSEASG00005011016) #32 GUCY1A2 (ENSEASG00005011012) CWF19L2 (ENSEASG00005011011) ALKBH8 (ENSEASG00005011010) Horse MODERN SPECIES 28 YAP1 (ENSECAG00000008660) #10 ENSECAG00000054274 BIRC3 (ENSECAG00000047232) #11 BIRC3 (ENSECAG00000012229) #13 TMEM123 (ENSECAG00000033952) MMP7 (ENSECAG00000021262) #14 MMP20 (ENSECAG00000011739) #16 MMP27 (ENSECAG00000019404) #17 MMP8 (ENSECAG00000044786) #18 MMP1 (ENSECAG00000046821) #19 MMP12 (ENSECAG00000019445) MMP12 (ENSECAG00000056462) #20 MMP13 (ENSECAG00000005506) ENSECAG00000038696 DCUN1D5 (ENSECAG00000005717) #21 DYNC2H1 (ENSECAG00000016257) #22 PDGFD (ENSECAG00000024746) #24 DDI1 (ENSECAG00000005520) #23 ENSECAG00000008723 ENSECAG00000012876 #26 CASP1 (ENSECAG00000024367) ENSECAG00000027719 GRIA4 (ENSECAG00000009916) #29 MSANTD4 (ENSECAG00000011320) #30 KBTBD3 (ENSECAG00000012801) #31 AASDHPPT (ENSECAG00000013032) #32 GUCY1A2 (ENSECAG00000018191) CWF19L2 (ENSECAG00000004314) ALKBH8 (ENSECAG00000019425) ELMOD1 (ENSECAG00000010926) SLC35F2 (ENSECAG00000019266) Carnivora ANCESTRAL SPECIES 21 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01090000260451 ENSGT00390000015655.a Felidae ANCESTRAL SPECIES ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000015352.o.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01090000260451 ENSGT00390000015655.a Panthera ANCESTRAL SPECIES 26 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000015352.o.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01090000260451 ENSGT00390000015655.a Panthera_a ANCESTRAL SPECIES 29 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000015352.o.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01090000260451 ENSGT00390000015655.a lion MODERN SPECIES 10 CEP126 (ENSPLOG00000017379) YAP1 (ENSPLOG00000017584) #10 BIRC3 (ENSPLOG00000018022) #11 BIRC2 (ENSPLOG00000018052) #13 TMEM123 (ENSPLOG00000018213) MMP7 (ENSPLOG00000018223) #14 MMP20 (ENSPLOG00000018280) #16 MMP27 (ENSPLOG00000018359) #17 MMP8 (ENSPLOG00000018450) #18 ENSPLOG00000018488 #19 MMP1 (ENSPLOG00000018733) #19 MMP3 (ENSPLOG00000018808) MMP12 (ENSPLOG00000018889) #20 MMP13 (ENSPLOG00000018961) ENSPLOG00000019032 #21 DYNC2H1 (ENSPLOG00000019300) #22 PDGFD (ENSPLOG00000020532) #24 DDI1 (ENSPLOG00000020565) #23 ENSPLOG00000020643 ENSPLOG00000020689 #26 GRIA4 (ENSPLOG00000020766) #29 MSANTD4 (ENSPLOG00000021006) #30 KBTBD3 (ENSPLOG00000021027) #31 AASDHPPT (ENSPLOG00000021049) #32 GUCY1A2 (ENSPLOG00000021082) ENSPLOG00000021113 CWF19L2 (ENSPLOG00000021204) ALKBH8 (ENSPLOG00000021289) ELMOD1 (ENSPLOG00000021429) ENSPLOG00000021511 SLC35F2 (ENSPLOG00000021519) leopard MODERN SPECIES 155 YAP1 (ENSPPRG00000017793) #10 BIRC3 (ENSPPRG00000017639) #11 BIRC2 (ENSPPRG00000015656) #13 ENSPPRG00000015061 MMP7 (ENSPPRG00000014613) #14 MMP20 (ENSPPRG00000014290) #16 MMP27 (ENSPPRG00000013916) #17 MMP8 (ENSPPRG00000013466) #18 ENSPPRG00000013409 #19 ENSPPRG00000012489 MMP1 (ENSPPRG00000012447) #19 ENSPPRG00000012357 MMP12 (ENSPPRG00000012183) #20 MMP13 (ENSPPRG00000012080) DCUN1D5 (ENSPPRG00000011374) #21 DYNC2H1 (ENSPPRG00000008878) #22 PDGFD (ENSPPRG00000005408) #24 Tiger MODERN SPECIES 74 CFAP300 (ENSPTIG00000009894) #9 YAP1 (ENSPTIG00000009822) #10 BIRC3 (ENSPTIG00000009589) #11 BIRC2 (ENSPTIG00000009197) #13 ENSPTIG00000008991 MMP7 (ENSPTIG00000008931) #14 MMP20 (ENSPTIG00000008810) #16 MMP27 (ENSPTIG00000008671) #17 MMP8 (ENSPTIG00000008615) #18 MMP10 (ENSPTIG00000008445) MMP1 (ENSPTIG00000008353) #19 MMP3 (ENSPTIG00000008284) MMP12 (ENSPTIG00000008238) #20 MMP13 (ENSPTIG00000008043) DCUN1D5 (ENSPTIG00000007744) #21 DYNC2H1 (ENSPTIG00000005732) #22 PDGFD (ENSPTIG00000005484) #24 ENSPTIG00000005234 ENSPTIG00000003345 #26 GRIA4 (ENSPTIG00000000010) #29 MSANTD4 (ENSPTIG00000020029) #30 KBTBD3 (ENSPTIG00000019990) #31 AASDHPPT (ENSPTIG00000019943) #32 Cat MODERN SPECIES 241 YAP1 (ENSFCAG00000035050) #10 BIRC3 (ENSFCAG00000041774) #11 TMEM123 (ENSFCAG00000041930) MMP7 (ENSFCAG00000015787) #14 MMP20 (ENSFCAG00000015788) #16 MMP27 (ENSFCAG00000015789) #17 MMP8 (ENSFCAG00000015790) #18 ENSFCAG00000047451 #19 MMP10 (ENSFCAG00000015796) MMP1 (ENSFCAG00000015791) #19 MMP3 (ENSFCAG00000015792) MMP12 (ENSFCAG00000010982) #20 MMP13 (ENSFCAG00000000118) ENSFCAG00000049048 DCUN1D5 (ENSFCAG00000037795) #21 DYNC2H1 (ENSFCAG00000028573) #22 PDGFD (ENSFCAG00000024385) #24 DDI1 (ENSFCAG00000043639) #23 CASP12 (ENSFCAG00000005920) CASP4 (ENSFCAG00000005921) #26 ENSFCAG00000037829 GRIA4 (ENSFCAG00000015605) #29 MSANTD4 (ENSFCAG00000042108) #30 KBTBD3 (ENSFCAG00000015606) #31 AASDHPPT (ENSFCAG00000031934) #32 ENSFCAG00000033787 ENSFCAG00000042411 GUCY1A2 (ENSFCAG00000038721) ENSFCAG00000034545 CWF19L2 (ENSFCAG00000045471) ALKBH8 (ENSFCAG00000033583) Caniformia ANCESTRAL SPECIES 17 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000264760 ENSGT00390000015655.a Caniformia_b ANCESTRAL SPECIES 3 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000159759.e.a ENSGT00940000154907.b #19 ENSGT00940000159759.e.b ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000264760 ENSGT00390000015655.a Ursidae ANCESTRAL SPECIES 15 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759.e.a ENSGT00940000159759.e.b ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000264760 ENSGT00390000015655.a ENSGT00940000159933 Ursus ANCESTRAL SPECIES 340 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 Polar bear DUPLICATION Polar bear DUPLICATION Polar bear MODERN SPECIES 166 BIRC2 (ENSUMAG00000009270) #13 ENSUMAG00000009266 MMP7 (ENSUMAG00000009262) #14 MMP20 (ENSUMAG00000009249) #16 MMP27 (ENSUMAG00000009207) #17 MMP8 (ENSUMAG00000009197) #18 ENSUMAG00000009165 #19 ENSUMAG00000009160 MMP1 (ENSUMAG00000009155) #19 ENSUMAG00000009143 MMP12 (ENSUMAG00000009133) #20 MMP13 (ENSUMAG00000009113) DCUN1D5 (ENSUMAG00000009107) #21 ENSUMAG00000009090 #22 ENSUMAG00000009073 #22 ENSUMAG00000009046 #22 DDI1 (ENSUMAG00000009040) #23 PDGFD (ENSUMAG00000009038) #24 ENSUMAG00000009027 ENSUMAG00000009022 #26 GRIA4 (ENSUMAG00000008904) #29 MSANTD4 (ENSUMAG00000008883) #30 KBTBD3 (ENSUMAG00000008879) #31 AASDHPPT (ENSUMAG00000008871) #32 ENSUMAG00000008866 GUCY1A2 (ENSUMAG00000008864) CWF19L2 (ENSUMAG00000008758) ALKBH8 (ENSUMAG00000008743) ELMOD1 (ENSUMAG00000008718) SLC35F2 (ENSUMAG00000008709) ENSUMAG00000008701 Polar bear MODERN SPECIES 166 BIRC3 (ENSUMAG00000009275) #11 BIRC2 (ENSUMAG00000009270) #13 ENSUMAG00000009266 MMP7 (ENSUMAG00000009262) #14 MMP20 (ENSUMAG00000009249) #16 MMP27 (ENSUMAG00000009207) #17 MMP8 (ENSUMAG00000009197) #18 ENSUMAG00000009165 #19 ENSUMAG00000009160 MMP1 (ENSUMAG00000009155) #19 ENSUMAG00000009143 MMP12 (ENSUMAG00000009133) #20 MMP13 (ENSUMAG00000009113) DCUN1D5 (ENSUMAG00000009107) #21 ENSUMAG00000009090 #22 ENSUMAG00000009073 #22 ENSUMAG00000009046 #22 DDI1 (ENSUMAG00000009040) #23 PDGFD (ENSUMAG00000009038) #24 ENSUMAG00000009027 ENSUMAG00000009022 #26 GRIA4 (ENSUMAG00000008904) #29 MSANTD4 (ENSUMAG00000008883) #30 KBTBD3 (ENSUMAG00000008879) #31 AASDHPPT (ENSUMAG00000008871) #32 ENSUMAG00000008866 GUCY1A2 (ENSUMAG00000008864) CWF19L2 (ENSUMAG00000008758) ALKBH8 (ENSUMAG00000008743) ELMOD1 (ENSUMAG00000008718) SLC35F2 (ENSUMAG00000008709) Polar bear MODERN SPECIES 166 YAP1 (ENSUMAG00000009288) #10 BIRC3 (ENSUMAG00000009275) #11 BIRC2 (ENSUMAG00000009270) #13 ENSUMAG00000009266 MMP7 (ENSUMAG00000009262) #14 MMP20 (ENSUMAG00000009249) #16 MMP27 (ENSUMAG00000009207) #17 MMP8 (ENSUMAG00000009197) #18 ENSUMAG00000009165 #19 ENSUMAG00000009160 MMP1 (ENSUMAG00000009155) #19 ENSUMAG00000009143 MMP12 (ENSUMAG00000009133) #20 MMP13 (ENSUMAG00000009113) DCUN1D5 (ENSUMAG00000009107) #21 ENSUMAG00000009090 #22 ENSUMAG00000009073 #22 ENSUMAG00000009046 #22 DDI1 (ENSUMAG00000009040) #23 PDGFD (ENSUMAG00000009038) #24 ENSUMAG00000009027 ENSUMAG00000009022 #26 GRIA4 (ENSUMAG00000008904) #29 MSANTD4 (ENSUMAG00000008883) #30 KBTBD3 (ENSUMAG00000008879) #31 AASDHPPT (ENSUMAG00000008871) #32 ENSUMAG00000008866 GUCY1A2 (ENSUMAG00000008864) CWF19L2 (ENSUMAG00000008758) ALKBH8 (ENSUMAG00000008743) ELMOD1 (ENSUMAG00000008718) American black bear DUPLICATION American black bear MODERN SPECIES 57 ENSUAMG00000013278 #22 ENSUAMG00000013276 #22 PDGFD (ENSUAMG00000013271) #24 DDI1 (ENSUAMG00000013270) #23 American black bear MODERN SPECIES 57 ENSUAMG00000013278 #22 ENSUAMG00000013276 #22 PDGFD (ENSUAMG00000013271) #24 DDI1 (ENSUAMG00000013270) #23 Giant Panda MODERN SPECIES 18 CFAP300 (ENSAMEG00000009990) #9 YAP1 (ENSAMEG00000010001) #10 BIRC2 (ENSAMEG00000010031) #13 TMEM123 (ENSAMEG00000010067) MMP7 (ENSAMEG00000010068) #14 MMP20 (ENSAMEG00000010079) #16 MMP27 (ENSAMEG00000010096) #17 MMP8 (ENSAMEG00000010107) #18 ENSAMEG00000028774 #19 ENSAMEG00000010164 MMP1 (ENSAMEG00000010172) #19 ENSAMEG00000010203 MMP12 (ENSAMEG00000010243) #20 MMP13 (ENSAMEG00000010270) DCUN1D5 (ENSAMEG00000010318) #21 DYNC2H1 (ENSAMEG00000010320) #22 PDGFD (ENSAMEG00000013560) #24 DDI1 (ENSAMEG00000019134) #23 ENSAMEG00000000511 ENSAMEG00000000467 #26 ENSAMEG00000000390 #29 ENSAMEG00000000384 #30 KBTBD3 (ENSAMEG00000000382) #31 AASDHPPT (ENSAMEG00000000370) #32 GUCY1A2 (ENSAMEG00000014522) ENSAMEG00000019460 CWF19L2 (ENSAMEG00000015500) ALKBH8 (ENSAMEG00000002177) ELMOD1 (ENSAMEG00000002195) ENSAMEG00000019353 SLC35F2 (ENSAMEG00000002230) Mustelinae ANCESTRAL SPECIES 111 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000159759.e.a ENSGT00940000154907.b #19 ENSGT00940000159759.e.b ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000264760 ENSGT00390000015655.a American mink MODERN SPECIES 178 ENSNVIG00000021606 BIRC3 (ENSNVIG00000021612) #11 BIRC2 (ENSNVIG00000021650) #13 ENSNVIG00000021676 ENSNVIG00000021687 MMP20 (ENSNVIG00000021713) #16 MMP27 (ENSNVIG00000021721) #17 MMP8 (ENSNVIG00000021739) #18 ENSNVIG00000021764 #19 ENSNVIG00000021891 MMP1 (ENSNVIG00000021897) #19 ENSNVIG00000021908 MMP12 (ENSNVIG00000021917) #20 MMP13 (ENSNVIG00000021947) DCNL5 (ENSNVIG00000021961) #21 DYNC2H1 (ENSNVIG00000022015) #22 PDGFD (ENSNVIG00000022429) #24 DDI1 (ENSNVIG00000022449) #23 CASP12 (ENSNVIG00000022452) ENSNVIG00000022460 #26 ENSNVIG00000022469 GRIA4 (ENSNVIG00000022497) #29 MSANTD4 (ENSNVIG00000022573) #30 KBTBD3 (ENSNVIG00000022585) #31 AASDHPPT (ENSNVIG00000022596) #32 Ferret MODERN SPECIES 268 YAP1 (ENSMPUG00000007208) #10 BIRC3 (ENSMPUG00000007197) #11 BIRC2 (ENSMPUG00000007189) #13 ENSMPUG00000007177 MMP7 (ENSMPUG00000007166) #14 MMP20 (ENSMPUG00000007153) #16 MMP27 (ENSMPUG00000007119) #17 MMP8 (ENSMPUG00000006884) #18 ENSMPUG00000006878 MMP1 (ENSMPUG00000006871) #19 ENSMPUG00000006864 MMP12 (ENSMPUG00000006848) #20 MMP13 (ENSMPUG00000006840) ENSMPUG00000006838 DCUN1D5 (ENSMPUG00000006833) #21 DYNC2H1 (ENSMPUG00000006434) #22 ENSMPUG00000006430 DDI1 (ENSMPUG00000006425) #23 PDGFD (ENSMPUG00000006416) #24 ENSMPUG00000006357 ENSMPUG00000006341 GRIA4 (ENSMPUG00000006324) #29 MSANTD4 (ENSMPUG00000006316) #30 KBTBD3 (ENSMPUG00000006307) #31 AASDHPPT (ENSMPUG00000006273) #32 ENSMPUG00000006266 GUCY1A2 (ENSMPUG00000006254) CWF19L2 (ENSMPUG00000006145) ALKBH8 (ENSMPUG00000006077) ELMOD1 (ENSMPUG00000006069) ENSMPUG00000020160 Canidae ANCESTRAL SPECIES 27 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00950000186014 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00390000017443.g.a.a ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000163894 ENSGT00940000159782 Red fox MODERN SPECIES 61 CFAP300 (ENSVVUG00000010540) #9 YAP1 (ENSVVUG00000010559) #10 BIRC3 (ENSVVUG00000010573) #11 BIRC2 (ENSVVUG00000010579) #13 ENSVVUG00000010721 ENSVVUG00000010725 MMP7 (ENSVVUG00000010731) #14 MMP20 (ENSVVUG00000010743) #16 MMP27 (ENSVVUG00000010759) #17 MMP8 (ENSVVUG00000010844) #18 MMP1 (ENSVVUG00000011949) #19 MMP3 (ENSVVUG00000011962) MMP12 (ENSVVUG00000011970) #20 MMP13 (ENSVVUG00000011996) ENSVVUG00000012007 #21 DYNC2H1 (ENSVVUG00000012126) #22 PDGFD (ENSVVUG00000013885) #24 DDI1 (ENSVVUG00000013892) #23 ENSVVUG00000013893 ENSVVUG00000013912 CASP12 (ENSVVUG00000013915) ENSVVUG00000013918 ENSVVUG00000013932 GRIA4 (ENSVVUG00000013946) #29 ENSVVUG00000013955 MSANTD4 (ENSVVUG00000013957) #30 KBTBD3 (ENSVVUG00000013959) #31 AASDHPPT (ENSVVUG00000013961) #32 ENSVVUG00000013968 ENSVVUG00000013969 GUCY1A2 (ENSVVUG00000013971) Canis_lupus ANCESTRAL SPECIES 28 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155.a #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00950000182967.a.a.a.a.a.b.b.a ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00950000186014 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00390000017443.g.a.a ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000163894 Dingo DUPLICATION Dingo DUPLICATION Dingo MODERN SPECIES 214 YAP1 (ENSCAFG00020009787) #10 BIRC3 (ENSCAFG00020009777) #11 BIRC2 (ENSCAFG00020009773) #13 ENSCAFG00020009766 #14 MMP20 (ENSCAFG00020009756) #16 MMP27 (ENSCAFG00020009747) #17 MMP8 (ENSCAFG00020009478) #18 MMP1 (ENSCAFG00020009380) #19 MMP3 (ENSCAFG00020009376) MMP12 (ENSCAFG00020009354) #20 MMP13 (ENSCAFG00020009304) ENSCAFG00020009289 #21 VDAC1 (ENSCAFG00020009285) ENSCAFG00020009260 #22 ENSCAFG00020009235 #22 ENSCAFG00020009224 #22 DDI1 (ENSCAFG00020009203) #23 PDGFD (ENSCAFG00020009202) #24 ENSCAFG00020009183 ENSCAFG00020009172 CASP12 (ENSCAFG00020009167) ENSCAFG00020009158 ENSCAFG00020009148 GRIA4 (ENSCAFG00020009023) #29 MSANTD4 (ENSCAFG00020009005) #30 KBTBD3 (ENSCAFG00020008995) #31 AASDHPPT (ENSCAFG00020008990) #32 ENSCAFG00020008979 GUCY1A2 (ENSCAFG00020008933) CWF19L2 (ENSCAFG00020008885) ALKBH8 (ENSCAFG00020008876) Dingo MODERN SPECIES 214 CEP126 (ENSCAFG00020009832) CFAP300 (ENSCAFG00020009803) #9 YAP1 (ENSCAFG00020009787) #10 BIRC3 (ENSCAFG00020009777) #11 BIRC2 (ENSCAFG00020009773) #13 ENSCAFG00020009766 #14 MMP20 (ENSCAFG00020009756) #16 MMP27 (ENSCAFG00020009747) #17 MMP8 (ENSCAFG00020009478) #18 MMP1 (ENSCAFG00020009380) #19 MMP3 (ENSCAFG00020009376) MMP12 (ENSCAFG00020009354) #20 MMP13 (ENSCAFG00020009304) ENSCAFG00020009289 #21 VDAC1 (ENSCAFG00020009285) ENSCAFG00020009260 #22 ENSCAFG00020009235 #22 ENSCAFG00020009224 #22 DDI1 (ENSCAFG00020009203) #23 PDGFD (ENSCAFG00020009202) #24 ENSCAFG00020009183 ENSCAFG00020009172 CASP12 (ENSCAFG00020009167) ENSCAFG00020009158 ENSCAFG00020009148 GRIA4 (ENSCAFG00020009023) #29 MSANTD4 (ENSCAFG00020009005) #30 KBTBD3 (ENSCAFG00020008995) #31 AASDHPPT (ENSCAFG00020008990) #32 ENSCAFG00020008979 GUCY1A2 (ENSCAFG00020008933) Dingo MODERN SPECIES 214 CFAP300 (ENSCAFG00020009803) #9 YAP1 (ENSCAFG00020009787) #10 BIRC3 (ENSCAFG00020009777) #11 BIRC2 (ENSCAFG00020009773) #13 ENSCAFG00020009766 #14 MMP20 (ENSCAFG00020009756) #16 MMP27 (ENSCAFG00020009747) #17 MMP8 (ENSCAFG00020009478) #18 MMP1 (ENSCAFG00020009380) #19 MMP3 (ENSCAFG00020009376) MMP12 (ENSCAFG00020009354) #20 MMP13 (ENSCAFG00020009304) ENSCAFG00020009289 #21 VDAC1 (ENSCAFG00020009285) ENSCAFG00020009260 #22 ENSCAFG00020009235 #22 ENSCAFG00020009224 #22 DDI1 (ENSCAFG00020009203) #23 PDGFD (ENSCAFG00020009202) #24 ENSCAFG00020009183 ENSCAFG00020009172 CASP12 (ENSCAFG00020009167) ENSCAFG00020009158 ENSCAFG00020009148 GRIA4 (ENSCAFG00020009023) #29 MSANTD4 (ENSCAFG00020009005) #30 KBTBD3 (ENSCAFG00020008995) #31 AASDHPPT (ENSCAFG00020008990) #32 ENSCAFG00020008979 GUCY1A2 (ENSCAFG00020008933) CWF19L2 (ENSCAFG00020008885) Dog DUPLICATION Dog MODERN SPECIES 33 YAP1 (ENSCAFG00845001157) #10 BIRC3 (ENSCAFG00845001106) #11 BIRC2 (ENSCAFG00845001046) #13 TMEM123 (ENSCAFG00845001013) MMP7 (ENSCAFG00845000992) #14 MMP20 (ENSCAFG00845000974) #16 MMP27 (ENSCAFG00845000933) #17 MMP8 (ENSCAFG00845000899) #18 MMP1 (ENSCAFG00845000871) #19 MMP3 (ENSCAFG00845000842) MMP12 (ENSCAFG00845000798) #20 MMP13 (ENSCAFG00845000761) DCUN1D5 (ENSCAFG00845000732) #21 ENSCAFG00845000714 ENSCAFG00845000695 #22 ENSCAFG00845000669 #22 DDI1 (ENSCAFG00845000650) #23 PDGFD (ENSCAFG00845000627) #24 ENSCAFG00845000601 ENSCAFG00845000587 CASP12 (ENSCAFG00845000482) CASP4 (ENSCAFG00845000375) ENSCAFG00845000322 GRIA4 (ENSCAFG00845000279) #29 MSANTD4 (ENSCAFG00845000215) #30 KBTBD3 (ENSCAFG00845004053) #31 AASDHPPT (ENSCAFG00845004003) #32 ENSCAFG00845003965 GUCY1A2 (ENSCAFG00845003912) CWF19L2 (ENSCAFG00845003823) ALKBH8 (ENSCAFG00845003777) Dog MODERN SPECIES 33 CFAP300 (ENSCAFG00845001215) #9 YAP1 (ENSCAFG00845001157) #10 BIRC3 (ENSCAFG00845001106) #11 BIRC2 (ENSCAFG00845001046) #13 TMEM123 (ENSCAFG00845001013) MMP7 (ENSCAFG00845000992) #14 MMP20 (ENSCAFG00845000974) #16 MMP27 (ENSCAFG00845000933) #17 MMP8 (ENSCAFG00845000899) #18 MMP1 (ENSCAFG00845000871) #19 MMP3 (ENSCAFG00845000842) MMP12 (ENSCAFG00845000798) #20 MMP13 (ENSCAFG00845000761) DCUN1D5 (ENSCAFG00845000732) #21 ENSCAFG00845000714 ENSCAFG00845000695 #22 ENSCAFG00845000669 #22 DDI1 (ENSCAFG00845000650) #23 PDGFD (ENSCAFG00845000627) #24 ENSCAFG00845000601 ENSCAFG00845000587 CASP12 (ENSCAFG00845000482) CASP4 (ENSCAFG00845000375) ENSCAFG00845000322 GRIA4 (ENSCAFG00845000279) #29 MSANTD4 (ENSCAFG00845000215) #30 KBTBD3 (ENSCAFG00845004053) #31 AASDHPPT (ENSCAFG00845004003) #32 ENSCAFG00845003965 GUCY1A2 (ENSCAFG00845003912) CWF19L2 (ENSCAFG00845003823) Eulipotyphla ANCESTRAL SPECIES 2205 ENSGT00940000156155 #21 ENSGT00940000154620 #22 Hedgehog DUPLICATION Hedgehog MODERN SPECIES 7865 ENSEEUG00000012605 #22 ENSEEUG00000012670 #22 Hedgehog MODERN SPECIES 7865 ENSEEUG00000012605 #22 ENSEEUG00000012670 #22 Common shrew DUPLICATION Common shrew MODERN SPECIES 2637 DCUN1D5 (ENSSARG00000003213) #21 ENSSARG00000003244 #22 ENSSARG00000003282 #22 Common shrew MODERN SPECIES 2637 DCUN1D5 (ENSSARG00000003213) #21 ENSSARG00000003244 #22 ENSSARG00000003282 #22 Euarchontoglires ANCESTRAL SPECIES 1 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00940000154175.j ##11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00390000008536 ENSGT00940000159782 Primates ANCESTRAL SPECIES ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00390000008536 Haplorrhini ANCESTRAL SPECIES ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00390000008536 ENSGT00940000159782 Simiiformes ANCESTRAL SPECIES ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.b ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 Catarrhini ANCESTRAL SPECIES 1 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.b ENSGT00940000159114.a.a ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a Hominoidea ANCESTRAL SPECIES 1 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.b ENSGT00940000159114.a.a ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a Hominidae ANCESTRAL SPECIES 1 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.a ENSGT00940000159114.a.b ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a Homo/Pan/Gorilla group ANCESTRAL SPECIES 8 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.b ENSGT00940000164349 ENSGT00940000159114.a.a ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a Homo/Pan group ANCESTRAL SPECIES 1 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.b ENSGT00940000164349 ENSGT00940000159114.a.a ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a Pan ANCESTRAL SPECIES 1 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.b ENSGT00940000159114.a.a ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a ENSGT00940000155627 Chimpanzee MODERN SPECIES 2 YAP1 (ENSPTRG00000004211) #10 BIRC3 (ENSPTRG00000004212) #11 BIRC2 (ENSPTRG00000004213) #13 TMEM123 (ENSPTRG00000022738) MMP7 (ENSPTRG00000004215) #14 MMP20 (ENSPTRG00000004216) #16 MMP27 (ENSPTRG00000004217) #17 MMP8 (ENSPTRG00000004218) #18 MMP10 (ENSPTRG00000004219) MMP1 (ENSPTRG00000023318) #19 ENSPTRG00000043621 MMP3 (ENSPTRG00000004220) MMP12 (ENSPTRG00000048755) #20 MMP13 (ENSPTRG00000004222) DCUN1D5 (ENSPTRG00000004223) #21 DYNC2H1 (ENSPTRG00000004224) #22 PDGFD (ENSPTRG00000004227) #24 CASP12 (ENSPTRG00000028413) CASP4 (ENSPTRG00000023646) #26 CASP5 (ENSPTRG00000004230) #26 CASP1 (ENSPTRG00000048268) ENSPTRG00000052161 ENSPTRG00000004231 GRIA4 (ENSPTRG00000004233) #29 MSANTD4 (ENSPTRG00000004234) #30 KBTBD3 (ENSPTRG00000004235) #31 AASDHPPT (ENSPTRG00000004236) #32 GUCY1A2 (ENSPTRG00000004238) ENSPTRG00000045119 CWF19L2 (ENSPTRG00000004239) ENSPTRG00000047347 Bonobo MODERN SPECIES 2 YAP1 (ENSPPAG00000042951) #10 BIRC3 (ENSPPAG00000029649) #11 BIRC2 (ENSPPAG00000004061) #13 TMEM123 (ENSPPAG00000040642) MMP7 (ENSPPAG00000033482) #14 MMP20 (ENSPPAG00000007692) #16 MMP27 (ENSPPAG00000030100) #17 MMP8 (ENSPPAG00000029244) #18 MMP10 (ENSPPAG00000019189) MMP1 (ENSPPAG00000040747) #19 ENSPPAG00000031769 MMP3 (ENSPPAG00000036174) MMP12 (ENSPPAG00000007778) #20 MMP13 (ENSPPAG00000028323) DCUN1D5 (ENSPPAG00000030025) #21 DYNC2H1 (ENSPPAG00000040117) #22 PDGFD (ENSPPAG00000033732) #24 DDI1 (ENSPPAG00000020620) #23 CASP12 (ENSPPAG00000039543) CASP4 (ENSPPAG00000042390) #26 CASP1 (ENSPPAG00000030163) CARD16 (ENSPPAG00000042935) ENSPPAG00000035963 GRIA4 (ENSPPAG00000026718) #29 MSANTD4 (ENSPPAG00000043080) #30 KBTBD3 (ENSPPAG00000043957) #31 AASDHPPT (ENSPPAG00000030173) #32 ENSPPAG00000043185 ENSPPAG00000037738 CWF19L2 (ENSPPAG00000023443) ENSPPAG00000042965 Human MODERN SPECIES 2 CFAP300 (ENSG00000137691) #9 YAP1 (ENSG00000137693) #10 BIRC3 (ENSG00000023445) #11 BIRC2 (ENSG00000110330) #13 TMEM123 (ENSG00000152558) MMP7 (ENSG00000137673) #14 MMP20 (ENSG00000137674) #16 MMP27 (ENSG00000137675) #17 MMP8 (ENSG00000118113) #18 MMP10 (ENSG00000166670) MMP1 (ENSG00000196611) #19 MMP3 (ENSG00000149968) MMP12 (ENSG00000262406) #20 MMP13 (ENSG00000137745) DCUN1D5 (ENSG00000137692) #21 DYNC2H1 (ENSG00000187240) #22 PDGFD (ENSG00000170962) #24 DDI1 (ENSG00000170967) #23 CASP12 (ENSG00000204403) CASP4 (ENSG00000196954) #26 CASP5 (ENSG00000137757) #26 CASP1 (ENSG00000137752) CARD16 (ENSG00000204397) CARD18 (ENSG00000255501) GRIA4 (ENSG00000152578) #29 MSANTD4 (ENSG00000170903) #30 KBTBD3 (ENSG00000182359) #31 AASDHPPT (ENSG00000149313) #32 GUCY1A2 (ENSG00000152402) CWF19L2 (ENSG00000152404) ALKBH8 (ENSG00000137760) Gorilla MODERN SPECIES 2 ENSGGOG00000005796 #10 BIRC3 (ENSGGOG00000005827) #11 BIRC2 (ENSGGOG00000008327) #13 TMEM123 (ENSGGOG00000008331) ENSGGOG00000015908 #14 MMP20 (ENSGGOG00000003314) #16 MMP27 (ENSGGOG00000008717) #17 MMP8 (ENSGGOG00000008722) #18 MMP10 (ENSGGOG00000026738) MMP1 (ENSGGOG00000008869) #19 ENSGGOG00000037629 MMP3 (ENSGGOG00000010315) MMP12 (ENSGGOG00000015496) #20 MMP13 (ENSGGOG00000003490) DCUN1D5 (ENSGGOG00000028011) #21 DYNC2H1 (ENSGGOG00000012522) #22 PDGFD (ENSGGOG00000002102) #24 DDI1 (ENSGGOG00000012736) #23 CASP12 (ENSGGOG00000012075) CASP4 (ENSGGOG00000023145) #26 CASP5 (ENSGGOG00000015759) #26 CASP1 (ENSGGOG00000023820) ENSGGOG00000002144 ENSGGOG00000038864 CARD18 (ENSGGOG00000003113) GRIA4 (ENSGGOG00000017011) #29 MSANTD4 (ENSGGOG00000009947) #30 KBTBD3 (ENSGGOG00000003966) #31 ENSGGOG00000039147 #32 GUCY1A2 (ENSGGOG00000009726) ENSGGOG00000038540 Orangutan MODERN SPECIES 2 YAP1 (ENSPPYG00000003806) #10 BIRC3 (ENSPPYG00000034604) #11 BIRC2 (ENSPPYG00000003808) #13 TMEM123 (ENSPPYG00000003809) MMP7 (ENSPPYG00000003810) #14 MMP20 (ENSPPYG00000003811) #16 MMP27 (ENSPPYG00000037566) #17 MMP8 (ENSPPYG00000003812) #18 ENSPPYG00000033588 MMP10 (ENSPPYG00000032892) MMP1 (ENSPPYG00000003813) #19 MMP3 (ENSPPYG00000003814) MMP12 (ENSPPYG00000034070) #20 MMP13 (ENSPPYG00000003815) DCUN1D5 (ENSPPYG00000003816) #21 DYNC2H1 (ENSPPYG00000003819) #22 PDGFD (ENSPPYG00000003821) #24 DDI1 (ENSPPYG00000003822) #23 ENSPPYG00000003823 CASP4 (ENSPPYG00000003824) #26 CASP5 (ENSPPYG00000003825) #26 CASP1 (ENSPPYG00000003826) ENSPPYG00000037088 ENSPPYG00000039362 ENSPPYG00000034995 CARD18 (ENSPPYG00000003827) GRIA4 (ENSPPYG00000003828) #29 MSANTD4 (ENSPPYG00000003829) #30 KBTBD3 (ENSPPYG00000032968) #31 AASDHPPT (ENSPPYG00000003831) #32 GUCY1A2 (ENSPPYG00000003832) Gibbon MODERN SPECIES 5 YAP1 (ENSNLEG00000007164) #10 ENSNLEG00000033031 BIRC3 (ENSNLEG00000007165) #11 BIRC2 (ENSNLEG00000031093) #13 TMEM123 (ENSNLEG00000007167) MMP7 (ENSNLEG00000007168) #14 MMP20 (ENSNLEG00000007169) #16 MMP27 (ENSNLEG00000007170) #17 ENSNLEG00000028184 #18 MMP10 (ENSNLEG00000007177) MMP1 (ENSNLEG00000007171) #19 MMP3 (ENSNLEG00000007178) MMP12 (ENSNLEG00000007183) #20 MMP13 (ENSNLEG00000007186) DCUN1D5 (ENSNLEG00000007189) #21 DYNC2H1 (ENSNLEG00000007190) #22 DDI1 (ENSNLEG00000019234) #23 PDGFD (ENSNLEG00000027133) #24 ENSNLEG00000027825 CASP4 (ENSNLEG00000007194) #26 CASP5 (ENSNLEG00000007197) #26 CASP1 (ENSNLEG00000007200) GRIA4 (ENSNLEG00000007202) #29 MSANTD4 (ENSNLEG00000007207) #30 KBTBD3 (ENSNLEG00000007209) #31 AASDHPPT (ENSNLEG00000007211) #32 ENSNLEG00000007212 ENSNLEG00000027810 ENSNLEG00000034019 CWF19L2 (ENSNLEG00000007213) ALKBH8 (ENSNLEG00000007217) Cercopithecidae ANCESTRAL SPECIES ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.b ENSGT00940000159114.a.a ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a Cercopithecinae ANCESTRAL SPECIES 3 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.a ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a ENSGT00940000155627 Cercopithecinae_a ANCESTRAL SPECIES 2 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.a ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00910000147733 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a Cercopithecinae_b ANCESTRAL SPECIES 21 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.a ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00910000147733 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a Cercopithecinae_d ANCESTRAL SPECIES 45 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00910000147719 #12 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000171202 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.a ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00910000147733 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a Sooty mangabey MODERN SPECIES 138 MMP7 (ENSCATG00000044241) #14 MMP20 (ENSCATG00000043912) #16 MMP27 (ENSCATG00000043668) #17 MMP8 (ENSCATG00000035287) #18 MMP10 (ENSCATG00000032332) MMP1 (ENSCATG00000044122) #19 MMP3 (ENSCATG00000040255) MMP12 (ENSCATG00000032347) #20 MMP13 (ENSCATG00000037318) DCUN1D5 (ENSCATG00000045156) #21 ENSCATG00000045002 DYNC2H1 (ENSCATG00000022191) #22 DDI1 (ENSCATG00000016207) #23 PDGFD (ENSCATG00000032486) #24 CASP12 (ENSCATG00000032709) CASP4 (ENSCATG00000034381) #26 CASP5 (ENSCATG00000033400) #26 ENSCATG00000034782 CASP1 (ENSCATG00000031081) CARD18 (ENSCATG00000044271) ENSCATG00000040187 GRIA4 (ENSCATG00000039166) #29 MSANTD4 (ENSCATG00000030475) #30 KBTBD3 (ENSCATG00000044798) #31 AASDHPPT (ENSCATG00000043976) #32 GUCY1A2 (ENSCATG00000037410) ENSCATG00000022017 Drill MODERN SPECIES 895 BIRC3 (ENSMLEG00000041716) #11 BIRC2 (ENSMLEG00000035461) #13 ENSMLEG00000035112 #12 TMEM123 (ENSMLEG00000034191) MMP7 (ENSMLEG00000031118) #14 MMP20 (ENSMLEG00000030794) #16 MMP27 (ENSMLEG00000031462) #17 MMP8 (ENSMLEG00000042565) #18 MMP10 (ENSMLEG00000031529) MMP1 (ENSMLEG00000041475) #19 ENSMLEG00000032101 MMP3 (ENSMLEG00000043132) MMP12 (ENSMLEG00000031646) #20 MMP13 (ENSMLEG00000033536) DCUN1D5 (ENSMLEG00000043262) #21 DYNC2H1 (ENSMLEG00000038133) #22 PDGFD (ENSMLEG00000028545) #24 Olive baboon MODERN SPECIES 3 ENSPANG00000047316 YAP1 (ENSPANG00000007466) #10 BIRC3 (ENSPANG00000018870) #11 TMEM123 (ENSPANG00000014629) MMP7 (ENSPANG00000012249) #14 MMP20 (ENSPANG00000003601) #16 MMP27 (ENSPANG00000032087) #17 MMP8 (ENSPANG00000019175) #18 MMP10 (ENSPANG00000007953) MMP1 (ENSPANG00000018869) #19 MMP3 (ENSPANG00000014348) MMP12 (ENSPANG00000018407) #20 MMP13 (ENSPANG00000016548) ENSPANG00000041736 DCUN1D5 (ENSPANG00000007860) #21 DYNC2H1 (ENSPANG00000023174) #22 PDGFD (ENSPANG00000017124) #24 ENSPANG00000047317 CASP12 (ENSPANG00000003600) CASP5 (ENSPANG00000022854) #26 CASP1 (ENSPANG00000007465) ENSPANG00000046546 ENSPANG00000032384 ENSPANG00000003972 CARD18 (ENSPANG00000041528) ENSPANG00000040645 ENSPANG00000034834 GRIA4 (ENSPANG00000003734) #29 MSANTD4 (ENSPANG00000017474) #30 KBTBD3 (ENSPANG00000014883) #31 AASDHPPT (ENSPANG00000019124) #32 Macaca ANCESTRAL SPECIES 2 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.a ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00910000147733 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000004524.c.a.a.a.a.a.a Macaca_a ANCESTRAL SPECIES 3 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.a ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 Rhesus MODERN SPECIES 5 YAP1 (ENSMMUG00000003396) #10 BIRC3 (ENSMMUG00000058594) #11 BIRC2 (ENSMMUG00000003400) #13 TMEM123 (ENSMMUG00000003403) MMP7 (ENSMMUG00000003405) #14 MMP20 (ENSMMUG00000011013) #16 MMP27 (ENSMMUG00000011015) #17 ENSMMUG00000053278 MMP8 (ENSMMUG00000004489) #18 MMP10 (ENSMMUG00000021764) MMP1 (ENSMMUG00000002037) #19 MMP3 (ENSMMUG00000004249) MMP12 (ENSMMUG00000004250) #20 MMP13 (ENSMMUG00000004253) DCUN1D5 (ENSMMUG00000007008) #21 DYNC2H1 (ENSMMUG00000018308) #22 PDGFD (ENSMMUG00000005353) #24 DDI1 (ENSMMUG00000042509) #23 CASP12 (ENSMMUG00000016548) CASP4 (ENSMMUG00000009850) #26 CASP5 (ENSMMUG00000009851) #26 CASP1 (ENSMMUG00000009852) ENSMMUG00000051672 ENSMMUG00000009854 CARD18 (ENSMMUG00000021551) ENSMMUG00000049289 GRIA4 (ENSMMUG00000010987) #29 MSANTD4 (ENSMMUG00000010988) #30 KBTBD3 (ENSMMUG00000010989) #31 AASDHPPT (ENSMMUG00000010990) #32 ENSMMUG00000062630 Crab-eating macaque MODERN SPECIES 5 YAP1 (ENSMFAG00000037027) #10 BIRC2 (ENSMFAG00000033018) #13 TMEM123 (ENSMFAG00000057826) ENSMFAG00000056286 ENSMFAG00000060149 MMP7 (ENSMFAG00000037818) #14 MMP20 (ENSMFAG00000035397) #16 MMP27 (ENSMFAG00000043441) #17 MMP8 (ENSMFAG00000032735) #18 MMP10 (ENSMFAG00000031795) MMP1 (ENSMFAG00000035922) #19 MMP3 (ENSMFAG00000037925) MMP12 (ENSMFAG00000037971) #20 MMP13 (ENSMFAG00000001049) DCUN1D5 (ENSMFAG00000033871) #21 DYNC2H1 (ENSMFAG00000039001) #22 PDGFD (ENSMFAG00000035368) #24 ENSMFAG00000058317 CASP12 (ENSMFAG00000019805) CASP4 (ENSMFAG00000000204) #26 CASP5 (ENSMFAG00000063780) #26 CASP1 (ENSMFAG00000001158) ENSMFAG00000043576 ENSMFAG00000039181 CARD18 (ENSMFAG00000037895) GRIA4 (ENSMFAG00000001913) #29 MSANTD4 (ENSMFAG00000034061) #30 KBTBD3 (ENSMFAG00000031041) #31 AASDHPPT (ENSMFAG00000046243) #32 GUCY1A2 (ENSMFAG00000034683) ENSMFAG00000054943 Pig-tailed macaque MODERN SPECIES 204 CFAP300 (ENSMNEG00000038673) #9 YAP1 (ENSMNEG00000032086) #10 BIRC3 (ENSMNEG00000040332) #11 BIRC2 (ENSMNEG00000038024) #13 TMEM123 (ENSMNEG00000040184) MMP7 (ENSMNEG00000040439) #14 MMP20 (ENSMNEG00000020408) #16 MMP27 (ENSMNEG00000041633) #17 MMP8 (ENSMNEG00000031542) #18 MMP10 (ENSMNEG00000026876) MMP1 (ENSMNEG00000034618) #19 MMP3 (ENSMNEG00000043414) MMP12 (ENSMNEG00000040391) #20 MMP13 (ENSMNEG00000037655) DCUN1D5 (ENSMNEG00000029266) #21 DYNC2H1 (ENSMNEG00000042907) #22 DDI1 (ENSMNEG00000023817) #23 PDGFD (ENSMNEG00000036191) #24 CASP12 (ENSMNEG00000032441) CASP4 (ENSMNEG00000027443) #26 CASP5 (ENSMNEG00000035890) #26 CASP1 (ENSMNEG00000007166) ENSMNEG00000045362 CARD18 (ENSMNEG00000041604) ENSMNEG00000034986 GRIA4 (ENSMNEG00000039956) #29 MSANTD4 (ENSMNEG00000028862) #30 KBTBD3 (ENSMNEG00000041894) #31 AASDHPPT (ENSMNEG00000032892) #32 ENSMNEG00000036279 ENSMNEG00000043288 Vervet Monkey MODERN SPECIES CFAP300 (ENSCSAG00000003227) #9 YAP1 (ENSCSAG00000003224) #10 BIRC3 (ENSCSAG00000003222) #11 TMEM123 (ENSCSAG00000003220) MMP7 (ENSCSAG00000003219) #14 MMP20 (ENSCSAG00000003216) #16 ENSCSAG00000000605 MMP27 (ENSCSAG00000003213) #17 MMP8 (ENSCSAG00000003209) #18 MMP10 (ENSCSAG00000003203) MMP1 (ENSCSAG00000003198) #19 MMP3 (ENSCSAG00000003190) MMP12 (ENSCSAG00000003188) #20 MMP13 (ENSCSAG00000003185) DCUN1D5 (ENSCSAG00000003173) #21 DYNC2H1 (ENSCSAG00000003153) #22 PDGFD (ENSCSAG00000003085) #24 DDI1 (ENSCSAG00000000604) #23 CASP12 (ENSCSAG00000003084) CASP4 (ENSCSAG00000003080) #26 CASP5 (ENSCSAG00000003077) #26 ENSCSAG00000003073 ENSCSAG00000003066 ENSCSAG00000003063 CARD18 (ENSCSAG00000000603) GRIA4 (ENSCSAG00000003058) #29 MSANTD4 (ENSCSAG00000003048) #30 KBTBD3 (ENSCSAG00000003044) #31 AASDHPPT (ENSCSAG00000003042) #32 ENSCSAG00000000602 GUCY1A2 (ENSCSAG00000003037) Rhinopithecus ANCESTRAL SPECIES 347 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 Golden snub-nosed monkey MODERN SPECIES 2119 CFAP300 (ENSRROG00000030852) #9 YAP1 (ENSRROG00000033903) #10 BIRC3 (ENSRROG00000039472) #11 BIRC2 (ENSRROG00000039789) #13 TMEM123 (ENSRROG00000035161) MMP7 (ENSRROG00000044514) #14 MMP20 (ENSRROG00000038564) #16 MMP27 (ENSRROG00000008615) #17 MMP8 (ENSRROG00000037624) #18 MMP10 (ENSRROG00000042454) MMP1 (ENSRROG00000030668) #19 MMP3 (ENSRROG00000043417) MMP12 (ENSRROG00000033367) #20 MMP13 (ENSRROG00000042337) DCUN1D5 (ENSRROG00000033290) #21 DYNC2H1 (ENSRROG00000029529) #22 Black snub-nosed monkey MODERN SPECIES 1497 CFAP300 (ENSRBIG00000043051) #9 YAP1 (ENSRBIG00000036436) #10 BIRC3 (ENSRBIG00000017780) #11 BIRC2 (ENSRBIG00000029682) #13 TMEM123 (ENSRBIG00000002017) MMP7 (ENSRBIG00000036156) #14 MMP20 (ENSRBIG00000033578) #16 MMP27 (ENSRBIG00000039707) #17 MMP8 (ENSRBIG00000036384) #18 MMP10 (ENSRBIG00000027869) MMP1 (ENSRBIG00000028827) #19 MMP3 (ENSRBIG00000018235) MMP12 (ENSRBIG00000032255) #20 MMP13 (ENSRBIG00000038724) DCUN1D5 (ENSRBIG00000038043) #21 DYNC2H1 (ENSRBIG00000039808) #22 Platyrrhini ANCESTRAL SPECIES 3 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.b ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627.a.a ENSGT00940000158563 ENSGT00940000159782 Cebidae ANCESTRAL SPECIES ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.b ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627.a.a ENSGT00940000158563 ENSGT00940000159782 Cebidae_a ANCESTRAL SPECIES 22 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000161497.h #26 ENSGT00940000161497.g #26 ENSGT00940000159114.b ENSGT00940000159114.a.b ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627.a.a ENSGT00940000158563 ENSGT00940000159782 ENSGT00390000015655.a Bolivian squirrel monkey MODERN SPECIES 50 ENSSBOG00000036077 YAP1 (ENSSBOG00000027497) #10 BIRC3 (ENSSBOG00000031187) #11 BIRC2 (ENSSBOG00000034069) #13 ENSSBOG00000029913 MMP7 (ENSSBOG00000026550) #14 MMP20 (ENSSBOG00000023588) #16 MMP27 (ENSSBOG00000003176) #17 MMP8 (ENSSBOG00000031477) #18 MMP10 (ENSSBOG00000029788) MMP1 (ENSSBOG00000034105) #19 MMP3 (ENSSBOG00000033146) MMP12 (ENSSBOG00000028385) #20 MMP13 (ENSSBOG00000035950) ENSSBOG00000033947 #21 DYNC2H1 (ENSSBOG00000032663) #22 PDGFD (ENSSBOG00000027472) #24 CASP4 (ENSSBOG00000023437) #26 CASP5 (ENSSBOG00000030105) #26 ENSSBOG00000028391 CASP1 (ENSSBOG00000021781) CARD18 (ENSSBOG00000032567) ENSSBOG00000022920 GRIA4 (ENSSBOG00000025256) #29 MSANTD4 (ENSSBOG00000031639) #30 KBTBD3 (ENSSBOG00000024589) #31 AASDHPPT (ENSSBOG00000014423) #32 GUCY1A2 (ENSSBOG00000020105) CWF19L2 (ENSSBOG00000033647) ALKBH8 (ENSSBOG00000031504) ELMOD1 (ENSSBOG00000031365) Capuchin MODERN SPECIES 171 TMEM123 (ENSCCAG00000021231) ENSCCAG00000017186 ENSCCAG00000026170 ENSCCAG00000015782 ENSCCAG00000028209 MMP7 (ENSCCAG00000021369) #14 MMP20 (ENSCCAG00000023652) #16 MMP27 (ENSCCAG00000034842) #17 MMP8 (ENSCCAG00000032628) #18 MMP10 (ENSCCAG00000036577) MMP1 (ENSCCAG00000021222) #19 MMP3 (ENSCCAG00000029156) MMP12 (ENSCCAG00000034212) #20 MMP13 (ENSCCAG00000001423) DCUN1D5 (ENSCCAG00000036060) #21 DYNC2H1 (ENSCCAG00000032776) #22 PDGFD (ENSCCAG00000033710) #24 CASP4 (ENSCCAG00000025091) #26 CASP1 (ENSCCAG00000024150) ENSCCAG00000023890 CARD18 (ENSCCAG00000032639) ENSCCAG00000028762 GRIA4 (ENSCCAG00000021010) #29 MSANTD4 (ENSCCAG00000033896) #30 KBTBD3 (ENSCCAG00000016315) #31 AASDHPPT (ENSCCAG00000024359) #32 Marmoset MODERN SPECIES 2 BIRC2 (ENSCJAG00000003804) #13 TMEM123 (ENSCJAG00000003801) MMP7 (ENSCJAG00000003793) #14 MMP20 (ENSCJAG00000003781) #16 MMP27 (ENSCJAG00000003769) #17 MMP8 (ENSCJAG00000003743) #18 MMP10 (ENSCJAG00000016298) MMP1 (ENSCJAG00000014107) #19 MMP3 (ENSCJAG00000038052) MMP12 (ENSCJAG00000009452) #20 MMP13 (ENSCJAG00000009477) DCUN1D5 (ENSCJAG00000009502) #21 DYNC2H1 (ENSCJAG00000009549) #22 ENSCJAG00000085591 PDGFD (ENSCJAG00000009788) #24 DDI1 (ENSCJAG00000053103) #23 CASP4 (ENSCJAG00000009805) #26 ENSCJAG00000069635 #26 CASP1 (ENSCJAG00000009842) ENSCJAG00000079451 ENSCJAG00000038168 CARD18 (ENSCJAG00000021995) GRIA4 (ENSCJAG00000009874) #29 ENSCJAG00000073825 MSANTD4 (ENSCJAG00000046964) #30 KBTBD3 (ENSCJAG00000043912) #31 AASDHPPT (ENSCJAG00000075247) #32 ENSCJAG00000084129 Mas night monkey MODERN SPECIES 278 YAP1 (ENSANAG00000029463) #10 ENSANAG00000022618 BIRC3 (ENSANAG00000035989) #11 BIRC2 (ENSANAG00000037030) #13 TMEM123 (ENSANAG00000029026) MMP7 (ENSANAG00000023347) #14 MMP20 (ENSANAG00000021702) #16 MMP27 (ENSANAG00000020509) #17 MMP8 (ENSANAG00000023440) #18 MMP3 (ENSANAG00000029899) MMP1 (ENSANAG00000028859) #19 ENSANAG00000004878 MMP12 (ENSANAG00000022445) #20 MMP13 (ENSANAG00000020799) DCUN1D5 (ENSANAG00000034204) #21 DYNC2H1 (ENSANAG00000035967) #22 PDGFD (ENSANAG00000023791) #24 CASP4 (ENSANAG00000027784) #26 CASP1 (ENSANAG00000032743) CARD16 (ENSANAG00000028470) CARD18 (ENSANAG00000028356) ENSANAG00000036500 ENSANAG00000023856 ENSANAG00000009840 Tarsier MODERN SPECIES 4417 MMP13 (ENSTSYG00000009858) DCUN1D5 (ENSTSYG00000001262) #21 DYNC2H1 (ENSTSYG00000006371) #22 Strepsirrhini ANCESTRAL SPECIES 6 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162428.b ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000164349 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 Bushbaby MODERN SPECIES 116 YAP1 (ENSOGAG00000002885) #10 ENSOGAG00000026633 BIRC3 (ENSOGAG00000005946) #11 ENSOGAG00000010377 #13 ENSOGAG00000028751 MMP7 (ENSOGAG00000024291) #14 MMP20 (ENSOGAG00000015247) #16 MMP27 (ENSOGAG00000015250) #17 MMP8 (ENSOGAG00000015256) #18 MMP10 (ENSOGAG00000010212) MMP1 (ENSOGAG00000010215) #19 MMP3 (ENSOGAG00000010220) MMP12 (ENSOGAG00000010221) #20 MMP13 (ENSOGAG00000010224) DCUN1D5 (ENSOGAG00000010225) #21 DYNC2H1 (ENSOGAG00000033838) #22 KDM4D (ENSOGAG00000032607) CWC15 (ENSOGAG00000001686) AMOTL1 (ENSOGAG00000003989) PIWIL4 (ENSOGAG00000012156) FUT4 (ENSOGAG00000025107) C11orf97 (ENSOGAG00000033264) ANKRD49 (ENSOGAG00000012155) #33 MRE11 (ENSOGAG00000012154) #34 GPR83 (ENSOGAG00000002520) #35 IZUMO1R (ENSOGAG00000002522) PANX1 (ENSOGAG00000015294) HEPHL1 (ENSOGAG00000015952) ENSOGAG00000034157 ENSOGAG00000033509 ENSOGAG00000026605 Lemuriformes ANCESTRAL SPECIES 13 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000164349.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 Mouse lemur MODERN SPECIES 27 CFAP300 (ENSMICG00000017739) #9 YAP1 (ENSMICG00000031456) #10 BIRC3 (ENSMICG00000002746) #11 ENSMICG00000044293 ENSMICG00000016656 MMP7 (ENSMICG00000002935) #14 MMP20 (ENSMICG00000002940) #16 MMP27 (ENSMICG00000036959) #17 MMP8 (ENSMICG00000014462) #18 MMP10 (ENSMICG00000006282) MMP1 (ENSMICG00000006291) #19 MMP3 (ENSMICG00000006301) MMP12 (ENSMICG00000006319) #20 MMP13 (ENSMICG00000006323) DCUN1D5 (ENSMICG00000006329) #21 DYNC2H1 (ENSMICG00000029576) #22 PDGFD (ENSMICG00000002460) #24 DDI1 (ENSMICG00000002464) #23 ENSMICG00000001838 #26 CASP12 (ENSMICG00000001832) ENSMICG00000001846 ENSMICG00000028150 ENSMICG00000042671 GRIA4 (ENSMICG00000003112) #29 MSANTD4 (ENSMICG00000036595) #30 KBTBD3 (ENSMICG00000030981) #31 AASDHPPT (ENSMICG00000032630) #32 ENSMICG00000036566 ENSMICG00000035020 GUCY1A2 (ENSMICG00000004925) CWF19L2 (ENSMICG00000010853) Lemuriformes_a ANCESTRAL SPECIES 22 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000164349.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 ENSGT00390000015655.a Greater bamboo lemur MODERN SPECIES 475 YAP1 (ENSPSMG00000009653) #10 BIRC3 (ENSPSMG00000009531) #11 BIRC2 (ENSPSMG00000009475) #13 ENSPSMG00000009400 MMP7 (ENSPSMG00000009394) #14 MMP20 (ENSPSMG00000009381) #16 MMP27 (ENSPSMG00000009374) #17 MMP8 (ENSPSMG00000009363) #18 ENSPSMG00000009358 #19 MMP10 (ENSPSMG00000009342) MMP1 (ENSPSMG00000009331) #19 MMP3 (ENSPSMG00000009315) MMP12 (ENSPSMG00000009292) #20 MMP13 (ENSPSMG00000009286) DCUN1D5 (ENSPSMG00000009263) #21 DYNC2H1 (ENSPSMG00000008986) #22 DDI1 (ENSPSMG00000008421) #23 PDGFD (ENSPSMG00000008395) #24 Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 760 CFAP300 (ENSPCOG00000001504) #9 YAP1 (ENSPCOG00000017226) #10 BIRC3 (ENSPCOG00000009368) #11 BIRC2 (ENSPCOG00000022626) #13 TMEM123 (ENSPCOG00000005902) MMP7 (ENSPCOG00000027243) #14 MMP20 (ENSPCOG00000015806) #16 MMP27 (ENSPCOG00000024142) #17 MMP8 (ENSPCOG00000003235) #18 MMP10 (ENSPCOG00000017692) MMP1 (ENSPCOG00000022669) #19 MMP3 (ENSPCOG00000023323) MMP12 (ENSPCOG00000015277) #20 MMP13 (ENSPCOG00000028792) DCUN1D5 (ENSPCOG00000004961) #21 ENSPCOG00000027848 #22 ENSPCOG00000025113 #22 PDGFD (ENSPCOG00000018484) #24 ENSPCOG00000021168 #26 ENSPCOG00000013698 #26 ENSPCOG00000019189 ENSPCOG00000028357 CARD18 (ENSPCOG00000012524) GRIA4 (ENSPCOG00000028018) #29 MSANTD4 (ENSPCOG00000023276) #30 KBTBD3 (ENSPCOG00000021176) #31 AASDHPPT (ENSPCOG00000014297) #32 GUCY1A2 (ENSPCOG00000016375) ENSPCOG00000015897 CWF19L2 (ENSPCOG00000018032) ALKBH8 (ENSPCOG00000022645) Coquerels sifaka MODERN SPECIES 760 YAP1 (ENSPCOG00000017226) #10 BIRC3 (ENSPCOG00000009368) #11 BIRC2 (ENSPCOG00000022626) #13 TMEM123 (ENSPCOG00000005902) MMP7 (ENSPCOG00000027243) #14 MMP20 (ENSPCOG00000015806) #16 MMP27 (ENSPCOG00000024142) #17 MMP8 (ENSPCOG00000003235) #18 MMP10 (ENSPCOG00000017692) MMP1 (ENSPCOG00000022669) #19 MMP3 (ENSPCOG00000023323) MMP12 (ENSPCOG00000015277) #20 MMP13 (ENSPCOG00000028792) DCUN1D5 (ENSPCOG00000004961) #21 ENSPCOG00000027848 #22 ENSPCOG00000025113 #22 PDGFD (ENSPCOG00000018484) #24 ENSPCOG00000021168 #26 ENSPCOG00000013698 #26 ENSPCOG00000019189 ENSPCOG00000028357 CARD18 (ENSPCOG00000012524) GRIA4 (ENSPCOG00000028018) #29 MSANTD4 (ENSPCOG00000023276) #30 KBTBD3 (ENSPCOG00000021176) #31 AASDHPPT (ENSPCOG00000014297) #32 GUCY1A2 (ENSPCOG00000016375) ENSPCOG00000015897 CWF19L2 (ENSPCOG00000018032) ALKBH8 (ENSPCOG00000022645) ELMOD1 (ENSPCOG00000023055) Euarchontoglires_A ANCESTRAL SPECIES 1 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00390000008536 ENSGT00940000168471 Glires ANCESTRAL SPECIES 1 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00390000008536 ENSGT00940000168471 Lagomorpha ANCESTRAL SPECIES 5 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000162428.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000158563 ENSGT00390000008536 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Pika DUPLICATION Pika DUPLICATION Pika MODERN SPECIES 2838 ENSOPRG00000007743 #21 ENSOPRG00000018732 #22 ENSOPRG00000010701 #22 ENSOPRG00000016082 #22 Pika MODERN SPECIES 2838 ENSOPRG00000007743 #21 ENSOPRG00000018732 #22 ENSOPRG00000010701 #22 ENSOPRG00000016082 #22 Pika MODERN SPECIES 2838 ENSOPRG00000007743 #21 ENSOPRG00000018732 #22 ENSOPRG00000010701 #22 ENSOPRG00000016082 #22 Rabbit MODERN SPECIES BIRC3 (ENSOCUG00000010109) #11 BIRC2 (ENSOCUG00000013890) #13 ENSOCUG00000006165 MMP7 (ENSOCUG00000015329) #14 MMP20 (ENSOCUG00000002930) #16 MMP27 (ENSOCUG00000001090) #17 MMP8 (ENSOCUG00000001092) #18 MMP10 (ENSOCUG00000021775) MMP1 (ENSOCUG00000017958) #19 MMP3 (ENSOCUG00000029337) MMP12 (ENSOCUG00000008303) #20 ENSOCUG00000011333 ENSOCUG00000029729 MMP13 (ENSOCUG00000002481) DCUN1D5 (ENSOCUG00000006512) #21 DYNC2H1 (ENSOCUG00000016257) #22 DDI1 (ENSOCUG00000015321) #23 PDGFD (ENSOCUG00000015312) #24 ENSOCUG00000007503 #26 ENSOCUG00000001103 ENSOCUG00000029247 GRIA4 (ENSOCUG00000001089) #29 MSANTD4 (ENSOCUG00000022457) #30 KBTBD3 (ENSOCUG00000000230) #31 AASDHPPT (ENSOCUG00000000231) #32 ENSOCUG00000023190 ENSOCUG00000036599 GUCY1A2 (ENSOCUG00000004490) ENSOCUG00000038405 CWF19L2 (ENSOCUG00000025398) ELMOD1 (ENSOCUG00000011869) Rodentia ANCESTRAL SPECIES 1 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 ENSGT00390000015655.a Rodentia_A ANCESTRAL SPECIES 1 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 ENSGT00390000015655.a Sciuridae ANCESTRAL SPECIES 2 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 ENSGT00390000015655.a ENSGT00940000159933 Marmotini ANCESTRAL SPECIES 20 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b.e #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 ENSGT00390000015655.a ENSGT00940000159933 Marmotini_b ANCESTRAL SPECIES 122 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b.e #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 ENSGT00390000015655.a ENSGT00940000159933 Squirrel MODERN SPECIES 151 YAP1 (ENSSTOG00000004960) #10 BIRC3 (ENSSTOG00000005734) #11 ENSSTOG00000005754 #13 ENSSTOG00000026499 TMEM123 (ENSSTOG00000032785) MMP7 (ENSSTOG00000027961) #14 MMP20 (ENSSTOG00000023437) #16 MMP27 (ENSSTOG00000008513) #17 MMP8 (ENSSTOG00000008539) #18 ENSSTOG00000008555 MMP1 (ENSSTOG00000008571) #19 MMP3 (ENSSTOG00000008584) MMP12 (ENSSTOG00000008600) #20 MMP13 (ENSSTOG00000008612) DCUN1D5 (ENSSTOG00000013580) #21 DYNC2H1 (ENSSTOG00000026849) #22 DDI1 (ENSSTOG00000004248) #23 PDGFD (ENSSTOG00000004230) #24 ENSSTOG00000002855 ENSSTOG00000007964 GRIA4 (ENSSTOG00000000265) #29 MSANTD4 (ENSSTOG00000027044) #30 KBTBD3 (ENSSTOG00000001079) #31 AASDHPPT (ENSSTOG00000000268) #32 GUCY1A2 (ENSSTOG00000013157) ENSSTOG00000027350 ENSSTOG00000033115 ALKBH8 (ENSSTOG00000024939) ELMOD1 (ENSSTOG00000001237) ENSSTOG00000001241 SLC35F2 (ENSSTOG00000011321) Arctic ground squirrel MODERN SPECIES 103 CEP126 (ENSUPAG00010019487) CFAP300 (ENSUPAG00010019501) #9 YAP1 (ENSUPAG00010019515) #10 BIRC3 (ENSUPAG00010019528) #11 BIRC2 (ENSUPAG00010019549) #13 TMEM123 (ENSUPAG00010019562) MMP7 (ENSUPAG00010019569) #14 MMP20 (ENSUPAG00010019573) #16 MMP27 (ENSUPAG00010019583) #17 MMP8 (ENSUPAG00010019593) #18 MMP3 (ENSUPAG00010019608) MMP1 (ENSUPAG00010019633) #19 MMP12 (ENSUPAG00010019655) #20 MMP13 (ENSUPAG00010019662) DCUN1D5 (ENSUPAG00010019672) #21 DYNC2H1 (ENSUPAG00010019688) #22 PDGFD (ENSUPAG00010019962) #24 DDI1 (ENSUPAG00010019982) #23 ENSUPAG00010019986 ENSUPAG00010019990 ENSUPAG00010020000 Alpin marmot MODERN SPECIES 25 CFAP300 (ENSMMMG00000002751) #9 YAP1 (ENSMMMG00000002718) #10 BIRC3 (ENSMMMG00000002693) #11 ENSMMMG00000002595 #13 TMEM123 (ENSMMMG00000002579) MMP7 (ENSMMMG00000002551) #14 MMP20 (ENSMMMG00000002519) #16 MMP27 (ENSMMMG00000002490) #17 MMP8 (ENSMMMG00000002471) #18 ENSMMMG00000002452 MMP1 (ENSMMMG00000002402) #19 MMP3 (ENSMMMG00000002377) MMP12 (ENSMMMG00000002359) #20 MMP13 (ENSMMMG00000002337) DCUN1D5 (ENSMMMG00000002318) #21 DYNC2H1 (ENSMMMG00000001718) #22 ENSMMMG00000001663 ENSMMMG00000001653 DDI1 (ENSMMMG00000001629) #23 PDGFD (ENSMMMG00000001580) #24 ENSMMMG00000001554 ENSMMMG00000001523 ENSMMMG00000001357 ENSMMMG00000001339 GRIA4 (ENSMMMG00000001185) #29 MSANTD4 (ENSMMMG00000001156) #30 KBTBD3 (ENSMMMG00000001143) #31 AASDHPPT (ENSMMMG00000001128) #32 ENSMMMG00000001082 CWF19L2 (ENSMMMG00000001043) ALKBH8 (ENSMMMG00000000941) Eurasian red squirrel MODERN SPECIES 2 CFAP300 (ENSSVLG00005013383) #9 YAP1 (ENSSVLG00005013738) #10 BIRC3 (ENSSVLG00005013872) #11 BIRC2 (ENSSVLG00005013957) #13 TMEM123 (ENSSVLG00005014049) MMP7 (ENSSVLG00005014206) #14 MMP20 (ENSSVLG00005014300) #16 MMP27 (ENSSVLG00005014388) #17 MMP8 (ENSSVLG00005014523) #18 MMP10 (ENSSVLG00005014643) MMP1 (ENSSVLG00005014774) #19 MMP3 (ENSSVLG00005014901) MMP12 (ENSSVLG00005015038) #20 MMP13 (ENSSVLG00005015162) DCUN1D5 (ENSSVLG00005015275) #21 DYNC2H1 (ENSSVLG00005015721) #22 ENSSVLG00005018071 ENSSVLG00005018153 PDGFD (ENSSVLG00005018195) #24 DDI1 (ENSSVLG00005018324) #23 ENSSVLG00005018358 ENSSVLG00005018566 ENSSVLG00005019096 GRIA4 (ENSSVLG00005019563) #29 MSANTD4 (ENSSVLG00005019923) #30 KBTBD3 (ENSSVLG00005019983) #31 AASDHPPT (ENSSVLG00005020020) #32 ENSSVLG00005020058 #36 GUCY1A2 (ENSSVLG00005020104) CWF19L2 (ENSSVLG00005020205) ENSSVLG00005020267 Hystricomorpha ANCESTRAL SPECIES 5 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a Hystricomorpha_a ANCESTRAL SPECIES 10 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a Hystricomorpha_b ANCESTRAL SPECIES 23 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a Long-tailed chinchilla MODERN SPECIES 119 CEP126 (ENSCLAG00000012819) CFAP300 (ENSCLAG00000013914) #9 YAP1 (ENSCLAG00000011113) #10 BIRC3 (ENSCLAG00000010783) #11 BIRC2 (ENSCLAG00000013394) #13 MMP7 (ENSCLAG00000015356) #14 MMP20 (ENSCLAG00000013214) #16 MMP27 (ENSCLAG00000010798) #17 MMP8 (ENSCLAG00000014040) #18 MMP10 (ENSCLAG00000013443) MMP1 (ENSCLAG00000011491) #19 MMP3 (ENSCLAG00000012886) MMP12 (ENSCLAG00000014288) #20 MMP13 (ENSCLAG00000011293) DCUN1D5 (ENSCLAG00000010606) #21 DYNC2H1 (ENSCLAG00000014268) #22 PDGFD (ENSCLAG00000013637) #24 DDI1 (ENSCLAG00000014263) #23 ENSCLAG00000015891 ENSCLAG00000012832 #26 ENSCLAG00000015719 GRIA4 (ENSCLAG00000012261) #29 MSANTD4 (ENSCLAG00000016121) #30 KBTBD3 (ENSCLAG00000014468) #31 AASDHPPT (ENSCLAG00000015434) #32 GUCY1A2 (ENSCLAG00000017060) CWF19L2 (ENSCLAG00000013844) ENSCLAG00000015715 ENSCLAG00000011087 ELMOD1 (ENSCLAG00000011927) ENSCLAG00000011651 Degu MODERN SPECIES 53 CFAP300 (ENSODEG00000014307) #9 ENSODEG00000013051 YAP1 (ENSODEG00000012897) #10 ENSODEG00000012579 ENSODEG00000013275 #11 ENSODEG00000012602 #13 MMP7 (ENSODEG00000012568) #14 MMP20 (ENSODEG00000012590) #16 MMP27 (ENSODEG00000012636) #17 MMP8 (ENSODEG00000013316) #18 MMP10 (ENSODEG00000014848) MMP3 (ENSODEG00000012755) MMP12 (ENSODEG00000012714) #20 MMP13 (ENSODEG00000012128) DCUN1D5 (ENSODEG00000012893) #21 DYNC2H1 (ENSODEG00000012699) #22 DDI1 (ENSODEG00000011789) #23 PDGFD (ENSODEG00000011848) #24 ENSODEG00000012044 ENSODEG00000011629 #26 ENSODEG00000013241 GRIA4 (ENSODEG00000012048) #29 MSANTD4 (ENSODEG00000011017) #30 KBTBD3 (ENSODEG00000012092) #31 ENSODEG00000011994 #32 ENSODEG00000012492 ENSODEG00000013543 ALKBH8 (ENSODEG00000011567) ENSODEG00000020136 ELMOD1 (ENSODEG00000015056) SLC35F2 (ENSODEG00000012070) Guinea pig MODERN SPECIES 19 CEP126 (ENSCPOG00000001844) CFAP300 (ENSCPOG00000011737) #9 YAP1 (ENSCPOG00000033105) #10 BIRC3 (ENSCPOG00000034907) #11 BIRC2 (ENSCPOG00000010349) #13 ENSCPOG00000038069 #14 MMP20 (ENSCPOG00000036970) #16 MMP27 (ENSCPOG00000035593) #17 MMP8 (ENSCPOG00000013813) #18 MMP10 (ENSCPOG00000035812) MMP1 (ENSCPOG00000006548) #19 MMP3 (ENSCPOG00000033163) MMP12 (ENSCPOG00000036913) #20 MMP13 (ENSCPOG00000000221) DCUN1D5 (ENSCPOG00000036831) #21 DYNC2H1 (ENSCPOG00000014189) #22 PDGFD (ENSCPOG00000038919) #24 DDI1 (ENSCPOG00000000861) #23 CASP12 (ENSCPOG00000035596) ENSCPOG00000011825 #26 ENSCPOG00000026333 ENSCPOG00000009512 #26 GRIA4 (ENSCPOG00000001062) #29 MSANTD4 (ENSCPOG00000033859) #30 KBTBD3 (ENSCPOG00000003792) #31 AASDHPPT (ENSCPOG00000030678) #32 ENSCPOG00000040462 GUCY1A2 (ENSCPOG00000000335) B3GAT1 (ENSCPOG00000023573) GLB1L2 (ENSCPOG00000000945) GLB1L3 (ENSCPOG00000034065) Naked mole-rat female MODERN SPECIES 24 TRPC6 (ENSHGLG00000000680) #7 PGR (ENSHGLG00000001843) ENSHGLG00000000253 ENSHGLG00000002861 ENSHGLG00000003321 #17 MMP8 (ENSHGLG00000003235) #18 MMP10 (ENSHGLG00000003158) MMP1 (ENSHGLG00000002821) #19 MMP3 (ENSHGLG00000001578) MMP12 (ENSHGLG00000001493) #20 ENSHGLG00000042652 ENSHGLG00000016013 MMP13 (ENSHGLG00000000539) ENSHGLG00000000439 #21 ENSHGLG00000000377 ENSHGLG00000001041 #22 ENSHGLG00000026082 ENSHGLG00000001157 DDI1 (ENSHGLG00000019795) #23 PDGFD (ENSHGLG00000050700) #24 ENSHGLG00000002176 ENSHGLG00000002557 ENSHGLG00000000369 #26 ENSHGLG00000000196 ENSHGLG00000034907 GRIA4 (ENSHGLG00000007205) #29 MSANTD4 (ENSHGLG00000015607) #30 KBTBD3 (ENSHGLG00000015784) #31 ENSHGLG00000015842 #32 ENSHGLG00000042979 GUCY1A2 (ENSHGLG00000017468) Rodentia_B ANCESTRAL SPECIES 23 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 ENSGT00390000015655.a Kangaroo rat MODERN SPECIES 329 Msantd2 (ENSDORG00000002743) Esam (ENSDORG00000028051) Vsig2 (ENSDORG00000002740) Nrgn (ENSDORG00000002739) Spa17 (ENSDORG00000023533) Siae (ENSDORG00000002735) Tbrg1 (ENSDORG00000002733) Panx3 (ENSDORG00000002966) ENSDORG00000027724 ENSDORG00000024857 ENSDORG00000027698 ENSDORG00000027629 ENSDORG00000024038 Or8b8 (ENSDORG00000027079) Dcun1d5 (ENSDORG00000001635) #21 Dync2h1 (ENSDORG00000010115) #22 Pdgfd (ENSDORG00000014006) #24 Ddi1 (ENSDORG00000002404) #23 Casp4 (ENSDORG00000016256) Casp1 (ENSDORG00000016257) ENSDORG00000023554 #29 Msantd4 (ENSDORG00000023419) #30 Kbtbd3 (ENSDORG00000012680) #31 Aasdhppt (ENSDORG00000012684) #32 Gucy1a2 (ENSDORG00000007568) ENSDORG00000008595 Alkbh8 (ENSDORG00000008596) Elmod1 (ENSDORG00000008597) Sln (ENSDORG00000026414) Slc35f2 (ENSDORG00000016340) Rab39 (ENSDORG00000026121) Myomorpha ANCESTRAL SPECIES 23 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 ENSGT00390000015655.a Lesser Egyptian jerboa MODERN SPECIES 87 Cfap300 (ENSJJAG00000022122) #9 ENSJJAG00000015982 ENSJJAG00000010414 #10 ENSJJAG00000021580 #11 ENSJJAG00000017306 #13 Tmem123 (ENSJJAG00000014178) Mmp7 (ENSJJAG00000009326) #14 Mmp20 (ENSJJAG00000020407) #16 Mmp27 (ENSJJAG00000011497) #17 Mmp8 (ENSJJAG00000021566) #18 ENSJJAG00000020496 ENSJJAG00000010013 #19 Mmp12 (ENSJJAG00000019762) #20 Mmp13 (ENSJJAG00000013818) Dcun1d5 (ENSJJAG00000004999) #21 Dync2h1 (ENSJJAG00000000557) #22 ENSJJAG00000016889 Ddi1 (ENSJJAG00000000750) #23 Pdgfd (ENSJJAG00000020441) #24 Muroidea ANCESTRAL SPECIES 29 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 ENSGT00390000015655.a Upper Galilee mountains blind mole rat MODERN SPECIES 401 Birc2 (ENSNGAG00000011071) #13 ENSNGAG00000000138 Mmp7 (ENSNGAG00000000983) #14 Mmp20 (ENSNGAG00000001298) #16 Mmp27 (ENSNGAG00000001467) #17 Mmp8 (ENSNGAG00000009311) #18 ENSNGAG00000011580 ENSNGAG00000012427 #19 Mmp3 (ENSNGAG00000008287) Mmp12 (ENSNGAG00000012323) #20 Mmp13 (ENSNGAG00000013401) Dcun1d5 (ENSNGAG00000013687) #21 Dync2h1 (ENSNGAG00000000125) #22 Pdgfd (ENSNGAG00000016717) #24 Muroidea_A ANCESTRAL SPECIES 23 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 Murinae ANCESTRAL SPECIES 3 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000159759 ENSGT00940000154907.b.m #19 ENSGT00940000154907.b.n #19 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 Mus ANCESTRAL SPECIES 4 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000159759 ENSGT00940000154907.b.m #19 ENSGT00940000154907.b.n #19 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 Mus_A ANCESTRAL SPECIES 4 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000159759 ENSGT00940000154907.b.m #19 ENSGT00940000154907.b.n #19 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 Mus_B ANCESTRAL SPECIES 3 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000159759 ENSGT00940000154907.b.m #19 ENSGT00940000154907.b.n #19 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 Mus_C ANCESTRAL SPECIES 8 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000159759 ENSGT00940000154907.b.m #19 ENSGT00940000154907.b.n #19 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000162428.b ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 spretus MODERN SPECIES 18 Yap1 (MGP_SPRETEiJ_G0032883) #10 Birc3 (MGP_SPRETEiJ_G0032882) #11 MGP_SPRETEiJ_G0032881 #13 Tmem123 (MGP_SPRETEiJ_G0032880) Mmp7 (MGP_SPRETEiJ_G0032879) #14 Mmp20 (MGP_SPRETEiJ_G0032878) #16 Mmp27 (MGP_SPRETEiJ_G0032877) #17 Mmp8 (MGP_SPRETEiJ_G0032876) #18 MGP_SPRETEiJ_G0032875 MGP_SPRETEiJ_G0032874 #19 MGP_SPRETEiJ_G0032873 #19 MGP_SPRETEiJ_G0032872 Mmp12 (MGP_SPRETEiJ_G0032871) #20 Mmp13 (MGP_SPRETEiJ_G0032870) MGP_SPRETEiJ_G0032869 #21 Dync2h1 (MGP_SPRETEiJ_G0032868) #22 Ddi1 (MGP_SPRETEiJ_G0032867) #23 Pdgfd (MGP_SPRETEiJ_G0032866) #24 Casp12 (MGP_SPRETEiJ_G0032865) Casp4 (MGP_SPRETEiJ_G0032864) Casp1 (MGP_SPRETEiJ_G0032863) Gria4 (MGP_SPRETEiJ_G0032862) #29 Msantd4 (MGP_SPRETEiJ_G0032861) #30 Kbtbd3 (MGP_SPRETEiJ_G0032860) #31 Aasdhppt (MGP_SPRETEiJ_G0032859) #32 Gucy1a2 (MGP_SPRETEiJ_G0032858) Cwf19l2 (MGP_SPRETEiJ_G0032857) Alkbh8 (MGP_SPRETEiJ_G0032856) Steppe mouse MODERN SPECIES 3057 Mmp7 (ENSMSIG00000018503) #14 Mmp20 (ENSMSIG00000018527) #16 Mmp27 (ENSMSIG00000018549) #17 Mmp8 (ENSMSIG00000018618) #18 Mmp10 (ENSMSIG00000018646) Mmp1a (ENSMSIG00000018671) #19 Mmp3 (ENSMSIG00000018686) Mmp1b (ENSMSIG00000018722) #19 Mmp12 (ENSMSIG00000018748) #20 ENSMSIG00000018840 Mmp13 (ENSMSIG00000018843) Dcun1d5 (ENSMSIG00000018871) #21 Dync2h1 (ENSMSIG00000018981) #22 Pdgfd (ENSMSIG00000019889) #24 Ddi1 (ENSMSIG00000019916) #23 Mouse MODERN SPECIES 18 Yap1 (ENSMUSG00000053110) #10 Birc3 (ENSMUSG00000032000) #11 Birc2 (ENSMUSG00000057367) #13 Tmem123 (ENSMUSG00000050912) Mmp7 (ENSMUSG00000018623) #14 Mmp20 (ENSMUSG00000018620) #16 Mmp27 (ENSMUSG00000070323) #17 Mmp8 (ENSMUSG00000005800) #18 Mmp10 (ENSMUSG00000047562) Mmp1a (ENSMUSG00000043089) #19 Mmp3 (ENSMUSG00000043613) Mmp1b (ENSMUSG00000041620) #19 Mmp12 (ENSMUSG00000049723) #20 Mmp13 (ENSMUSG00000050578) Dcun1d5 (ENSMUSG00000032002) #21 Dync2h1 (ENSMUSG00000047193) #22 Ddi1 (ENSMUSG00000047619) #23 Pdgfd (ENSMUSG00000032006) #24 Casp12 (ENSMUSG00000025887) Casp4 (ENSMUSG00000033538) Casp1 (ENSMUSG00000025888) Gria4 (ENSMUSG00000025892) #29 Msantd4 (ENSMUSG00000041124) #30 Kbtbd3 (ENSMUSG00000025893) #31 Aasdhppt (ENSMUSG00000025894) #32 Gucy1a2 (ENSMUSG00000041624) Cwf19l2 (ENSMUSG00000025898) Alkbh8 (ENSMUSG00000025899) Ryukyu mouse MODERN SPECIES 18 Yap1 (MGP_CAROLIEiJ_G0031763) #10 MGP_CAROLIEiJ_G0031762 #11 MGP_CAROLIEiJ_G0031761 ##11 Tmem123 (MGP_CAROLIEiJ_G0031760) Mmp7 (MGP_CAROLIEiJ_G0031759) #14 Mmp20 (MGP_CAROLIEiJ_G0031758) #16 Mmp27 (MGP_CAROLIEiJ_G0031757) #17 Mmp8 (MGP_CAROLIEiJ_G0031756) #18 Mmp10 (MGP_CAROLIEiJ_G0031755) Mmp1a (MGP_CAROLIEiJ_G0031754) #19 Mmp1b (MGP_CAROLIEiJ_G0031753) #19 Mmp3 (MGP_CAROLIEiJ_G0031752) Mmp12 (MGP_CAROLIEiJ_G0031751) #20 Mmp13 (MGP_CAROLIEiJ_G0031750) MGP_CAROLIEiJ_G0031749 #21 Dync2h1 (MGP_CAROLIEiJ_G0031748) #22 Ddi1 (MGP_CAROLIEiJ_G0031747) #23 Pdgfd (MGP_CAROLIEiJ_G0031746) #24 Casp12 (MGP_CAROLIEiJ_G0031745) Casp4 (MGP_CAROLIEiJ_G0031744) Casp1 (MGP_CAROLIEiJ_G0031743) Gria4 (MGP_CAROLIEiJ_G0031742) #29 Msantd4 (MGP_CAROLIEiJ_G0031741) #30 Kbtbd3 (MGP_CAROLIEiJ_G0031740) #31 Aasdhppt (MGP_CAROLIEiJ_G0031739) #32 Gucy1a2 (MGP_CAROLIEiJ_G0031738) Cwf19l2 (MGP_CAROLIEiJ_G0031737) Shrew mouse MODERN SPECIES 1 Cfap300 (MGP_PahariEiJ_G0014642) #9 Yap1 (MGP_PahariEiJ_G0014641) #10 Birc3 (MGP_PahariEiJ_G0014640) #11 MGP_PahariEiJ_G0014639 Tmem123 (MGP_PahariEiJ_G0014638) Mmp7 (MGP_PahariEiJ_G0014637) #14 Mmp20 (MGP_PahariEiJ_G0014636) #16 Mmp27 (MGP_PahariEiJ_G0014635) #17 Mmp8 (MGP_PahariEiJ_G0014634) #18 Mmp10 (MGP_PahariEiJ_G0014633) Mmp3 (MGP_PahariEiJ_G0014632) Mmp1b (MGP_PahariEiJ_G0014631) #19 Mmp12 (MGP_PahariEiJ_G0014630) #20 Mmp13 (MGP_PahariEiJ_G0014629) MGP_PahariEiJ_G0014628 #21 Dync2h1 (MGP_PahariEiJ_G0014627) #22 Ddi1 (MGP_PahariEiJ_G0014626) #23 Pdgfd (MGP_PahariEiJ_G0014625) #24 MGP_PahariEiJ_G0014624 Casp4 (MGP_PahariEiJ_G0014623) Casp1 (MGP_PahariEiJ_G0014622) Gria4 (MGP_PahariEiJ_G0014621) #29 Msantd4 (MGP_PahariEiJ_G0014620) #30 Kbtbd3 (MGP_PahariEiJ_G0014619) #31 Aasdhppt (MGP_PahariEiJ_G0014618) #32 Gucy1a2 (MGP_PahariEiJ_G0014617) Cwf19l2 (MGP_PahariEiJ_G0014616) Alkbh8 (MGP_PahariEiJ_G0014615) Rat MODERN SPECIES 18 Yap1 (ENSRNOG00000005933) #10 Birc3 (ENSRNOG00000005731) #11 Birc2 (ENSRNOG00000010602) #13 Tmem123 (ENSRNOG00000010584) Mmp7 (ENSRNOG00000010507) #14 Mmp20 (ENSRNOG00000021896) #16 Mmp27 (ENSRNOG00000040208) #17 Mmp8 (ENSRNOG00000009907) #18 Mmp10 (ENSRNOG00000032832) Mmp1 (ENSRNOG00000032353) #19 Mmp3 (ENSRNOG00000032626) Mmp1b (ENSRNOG00000008881) #19 Mmp12 (ENSRNOG00000030187) #20 Mmp13 (ENSRNOG00000008478) Dcun1d5 (ENSRNOG00000008390) #21 Dync2h1 (ENSRNOG00000032070) #22 Ddi1 (ENSRNOG00000022081) #23 ENSRNOG00000065876 Pdgfd (ENSRNOG00000029148) #24 ENSRNOG00000066836 ENSRNOG00000069423 Casp12 (ENSRNOG00000033434) Casp4 (ENSRNOG00000033697) Casp1 (ENSRNOG00000007372) Gria4 (ENSRNOG00000006957) #29 Msantd4 (ENSRNOG00000022245) #30 Kbtbd3 (ENSRNOG00000069206) #31 Aasdhppt (ENSRNOG00000005795) #32 ENSRNOG00000066855 AABR07068905.1 (ENSRNOG00000062096) Gucy1a2 (ENSRNOG00000029876) Cricetidae ANCESTRAL SPECIES 4 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759.h ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 Cricetidae_B ANCESTRAL SPECIES 58 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759.h ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 Northern American deer mouse MODERN SPECIES 20 Cfap300 (ENSPEMG00000021710) #9 Yap1 (ENSPEMG00000022927) #10 Birc3 (ENSPEMG00000020508) #11 Birc2 (ENSPEMG00000018476) #13 Tmem123 (ENSPEMG00000023085) Mmp7 (ENSPEMG00000021337) #14 Mmp20 (ENSPEMG00000011175) #16 Mmp27 (ENSPEMG00000024216) #17 Mmp8 (ENSPEMG00000022864) #18 Mmp10 (ENSPEMG00000021262) ENSPEMG00000020690 #19 Mmp3 (ENSPEMG00000020327) Mmp12 (ENSPEMG00000020371) #20 Mmp13 (ENSPEMG00000011633) Dcun1d5 (ENSPEMG00000020877) #21 Dync2h1 (ENSPEMG00000016383) #22 Pdgfd (ENSPEMG00000013246) #24 ENSPEMG00000028818 ENSPEMG00000021102 Casp12 (ENSPEMG00000022171) ENSPEMG00000008389 ENSPEMG00000026130 ENSPEMG00000025268 ENSPEMG00000025774 Gria4 (ENSPEMG00000005300) #29 Msantd4 (ENSPEMG00000029468) #30 Kbtbd3 (ENSPEMG00000029070) #31 Aasdhppt (ENSPEMG00000016551) #32 ENSPEMG00000025699 Gucy1a2 (ENSPEMG00000021986) Cwf19l2 (ENSPEMG00000022399) Prairie vole MODERN SPECIES 13 Cfap300 (ENSMOCG00000013197) #9 Yap1 (ENSMOCG00000007486) #10 Birc3 (ENSMOCG00000013964) #11 Birc2 (ENSMOCG00000010117) #13 Tmem123 (ENSMOCG00000021990) Mmp7 (ENSMOCG00000021222) #14 Mmp20 (ENSMOCG00000019578) #16 Mmp27 (ENSMOCG00000018511) #17 Mmp8 (ENSMOCG00000009399) #18 ENSMOCG00000007239 ENSMOCG00000023030 #19 Mmp3 (ENSMOCG00000006156) Mmp12 (ENSMOCG00000020347) #20 Mmp13 (ENSMOCG00000010248) Dcun1d5 (ENSMOCG00000008925) #21 Dync2h1 (ENSMOCG00000017521) #22 Pdgfd (ENSMOCG00000014518) #24 Casp1 (ENSMOCG00000019444) ENSMOCG00000004515 Gria4 (ENSMOCG00000011931) #29 Cricetinae ANCESTRAL SPECIES 45 ENSGT01060000248588.a.d.a #7 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759.h ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00950000182999.a.b #23 ENSGT00940000159575 #24 ENSGT00940000162555 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000156079 ENSGT00940000159308 Golden Hamster MODERN SPECIES 688 Cntn5 (ENSMAUG00000012675) Arhgap42 (ENSMAUG00000012529) Pgr (ENSMAUG00000019127) Trpc6 (ENSMAUG00000014533) #7 Cep126 (ENSMAUG00000013444) Cfap300 (ENSMAUG00000011879) #9 Birc2 (ENSMAUG00000018063) #13 ENSMAUG00000016756 Mmp20 (ENSMAUG00000011367) #16 Mmp27 (ENSMAUG00000000778) #17 ENSMAUG00000009988 #19 Mmp3 (ENSMAUG00000011335) Mmp12 (ENSMAUG00000008249) #20 Mmp13 (ENSMAUG00000001270) Dcun1d5 (ENSMAUG00000011071) #21 Dync2h1 (ENSMAUG00000015798) #22 Pdgfd (ENSMAUG00000012917) #24 Ddi1 (ENSMAUG00000016614) #23 Casp1 (ENSMAUG00000010193) ENSMAUG00000016775 #29 Msantd4 (ENSMAUG00000009891) #30 Kbtbd3 (ENSMAUG00000009346) #31 ENSMAUG00000008521 #32 Gucy1a2 (ENSMAUG00000011689) ENSMAUG00000008207 Or7g16 (ENSMAUG00000000891) Or7g30 (ENSMAUG00000010230) Or7g32 (ENSMAUG00000009330) ENSMAUG00000007695 ENSMAUG00000012374 Or7d11 (ENSMAUG00000016586) Chinese hamster chok1gshd MODERN SPECIES 202 Birc3 (ENSCGRG00001008505) #11 Birc2 (ENSCGRG00001023266) #13 ENSCGRG00001022513 Tmem123 (ENSCGRG00001018797) ENSCGRG00001015482 Mmp20 (ENSCGRG00001000330) #16 Mmp27 (ENSCGRG00001021757) #17 Mmp8 (ENSCGRG00001015038) #18 ENSCGRG00001014094 ENSCGRG00001020530 #19 ENSCGRG00001009381 Mmp3 (ENSCGRG00001015501) Mmp12 (ENSCGRG00001013053) #20 Mmp13 (ENSCGRG00001006492) Dcun1d5 (ENSCGRG00001014535) #21 Dync2h1 (ENSCGRG00001013236) #22 Ddi1 (ENSCGRG00001005855) #23 Pdgfd (ENSCGRG00001019661) #24 ENSCGRG00001004505 Casp12 (ENSCGRG00001018352) Casp1 (ENSCGRG00001009135) Gria4 (ENSCGRG00001016770) #29 Msantd4 (ENSCGRG00001019387) #30 Kbtbd3 (ENSCGRG00001018771) #31 ENSCGRG00001018331 #32 Gucy1a2 (ENSCGRG00001016426) Cwf19l2 (ENSCGRG00001010585) Alkbh8 (ENSCGRG00001011248) Fam135b (ENSCGRG00001009898) Col22a1 (ENSCGRG00001011324) ENSCGRG00001022989 Tree shrew DUPLICATION Tree shrew MODERN SPECIES 4711 ENSTBEG00000009456 #22 Tree shrew MODERN SPECIES 1791 MMP20 (ENSTBEG00000014473) #16 MMP27 (ENSTBEG00000015035) #17 MMP8 (ENSTBEG00000015520) #18 MMP10 (ENSTBEG00000016136) MMP1 (ENSTBEG00000017080) #19 MMP3 (ENSTBEG00000017424) MMP12 (ENSTBEG00000009604) #20 MMP13 (ENSTBEG00000009968) DCUN1D5 (ENSTBEG00000010532) #21 ENSTBEG00000011130 #22 Atlantogenata ANCESTRAL SPECIES 40 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01100000263709 ENSGT00390000015655.a Xenarthra ANCESTRAL SPECIES 226 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 Sloth MODERN SPECIES 6953 ENSCHOG00000013607 #22 Armadillo DUPLICATION Armadillo MODERN SPECIES 2666 MMP10 (ENSDNOG00000019850) MMP1 (ENSDNOG00000046998) #19 MMP3 (ENSDNOG00000001886) ENSDNOG00000049442 MMP12 (ENSDNOG00000016544) #20 MMP13 (ENSDNOG00000009362) DCUN1D5 (ENSDNOG00000035460) #21 ENSDNOG00000035114 #22 Armadillo MODERN SPECIES 1006 ENSDNOG00000043081 ENSDNOG00000039026 ENSDNOG00000047695 #22 PDGFD (ENSDNOG00000035513) #24 DDI1 (ENSDNOG00000003578) #23 CASP12 (ENSDNOG00000001797) ENSDNOG00000012369 #26 ENSDNOG00000010333 GRIA4 (ENSDNOG00000035874) #29 MSANTD4 (ENSDNOG00000045060) #30 KBTBD3 (ENSDNOG00000036411) #31 AASDHPPT (ENSDNOG00000039175) #32 Afrotheria ANCESTRAL SPECIES 43 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01040000240879 ENSGT00390000015655.a Tenrec MODERN SPECIES 7765 ENSETEG00000018615 #22 Afrotheria_a ANCESTRAL SPECIES 41 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.i.a #11 ENSGT00940000154175.i.b #13 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000163375 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000162085 #20 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00950000182999.a.b #23 ENSGT00940000162555 ENSGT00940000161497 #26 ENSGT00940000159114 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01040000240879 ENSGT00390000015655.a Elephant MODERN SPECIES 340 CFAP300 (ENSLAFG00000003215) #9 YAP1 (ENSLAFG00000003216) #10 BIRC3 (ENSLAFG00000006047) #11 BIRC2 (ENSLAFG00000002953) #13 ENSLAFG00000002954 MMP7 (ENSLAFG00000002955) #14 MMP20 (ENSLAFG00000010998) #16 MMP27 (ENSLAFG00000013164) #17 MMP8 (ENSLAFG00000013170) #18 MMP10 (ENSLAFG00000023165) MMP1 (ENSLAFG00000001642) #19 MMP3 (ENSLAFG00000010058) MMP12 (ENSLAFG00000010062) #20 MMP13 (ENSLAFG00000006001) DCUN1D5 (ENSLAFG00000016481) #21 DYNC2H1 (ENSLAFG00000016899) #22 PDGFD (ENSLAFG00000004236) #24 DDI1 (ENSLAFG00000004238) #23 CASP12 (ENSLAFG00000023231) ENSLAFG00000022421 #26 ENSLAFG00000016444 GRIA4 (ENSLAFG00000010979) #29 MSANTD4 (ENSLAFG00000010986) #30 KBTBD3 (ENSLAFG00000013885) #31 AASDHPPT (ENSLAFG00000018543) #32 GUCY1A2 (ENSLAFG00000003075) CWF19L2 (ENSLAFG00000004402) ALKBH8 (ENSLAFG00000017895) ELMOD1 (ENSLAFG00000002246) ENSLAFG00000002248 SLC35F2 (ENSLAFG00000009091) Hyrax MODERN SPECIES 6533 ENSPCAG00000004356 #22 Marsupialia ANCESTRAL SPECIES 5 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.h #11 ENSGT00940000154175.g #11 ENSGT00530000063929.b ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000166491 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000162555.a.a ENSGT00940000162428.a.b ENSGT00940000162428.a.a ENSGT00940000162555.b.b ENSGT01030000234886 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT00390000015655.a Marsupialia_b ANCESTRAL SPECIES 3 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.h #11 ENSGT00940000154175.g #11 ENSGT00530000063929.b ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000166491 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000162555.a.a ENSGT00940000162428.a.b ENSGT00940000162555.a.b ENSGT00940000162428.a.a ENSGT00940000162555.b.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT00390000015655.a Diprotodontia ANCESTRAL SPECIES 71 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.h #11 ENSGT00940000154175.g #11 ENSGT00530000063929.b ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000166491 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000162555.a.a ENSGT00940000162428.a.b ENSGT00940000162555.a.b ENSGT00940000162428.a.a ENSGT00940000162555.b.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT00390000015655.a Diprotodontia_a ANCESTRAL SPECIES 68 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175.h #11 ENSGT00940000154175.g #11 ENSGT00530000063929.b ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000161871 #18 ENSGT00940000154907.b #19 ENSGT00940000159759 ENSGT00940000166491 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000162555.a.a ENSGT00940000162428.a.b ENSGT00940000162555.a.b ENSGT00940000162428.a.a ENSGT00940000162555.b.b ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT00390000015655.a koala MODERN SPECIES 62 ENSPCIG00000024466 #9 YAP1 (ENSPCIG00000000622) #10 ENSPCIG00000000593 #11 ENSPCIG00000000555 #11 ENSPCIG00000000538 ENSPCIG00000000519 ENSPCIG00000000404 MMP20 (ENSPCIG00000000326) #16 MMP27 (ENSPCIG00000000304) #17 MMP8 (ENSPCIG00000000259) #18 MMP1 (ENSPCIG00000000229) #19 MMP3 (ENSPCIG00000000208) ENSPCIG00000000181 MMP13 (ENSPCIG00000031091) DCUN1D5 (ENSPCIG00000028494) #21 DYNC2H1 (ENSPCIG00000024886) #22 PDGFD (ENSPCIG00000030112) #24 ENSPCIG00000014109 ENSPCIG00000033610 ENSPCIG00000019980 ENSPCIG00000019977 GRIA4 (ENSPCIG00000024382) #29 MSANTD4 (ENSPCIG00000024381) #30 KBTBD3 (ENSPCIG00000024380) #31 AASDHPPT (ENSPCIG00000036047) #32 GUCY1A2 (ENSPCIG00000002542) ENSPCIG00000002556 ENSPCIG00000002569 ELMOD1 (ENSPCIG00000002612) ENSPCIG00000031787 ENSPCIG00000002651 Common wonbat MODERN SPECIES 486 CFAP300 (ENSVURG00010013089) #9 YAP1 (ENSVURG00010013100) #10 ENSVURG00010013133 #11 ENSVURG00010013150 ENSVURG00010013157 ENSVURG00010013167 MMP20 (ENSVURG00010013183) #16 ENSVURG00010013210 MMP27 (ENSVURG00010013217) #17 MMP8 (ENSVURG00010013224) #18 MMP1 (ENSVURG00010013247) #19 MMP3 (ENSVURG00010013258) ENSVURG00010013278 MMP13 (ENSVURG00010013285) DCUN1D5 (ENSVURG00010013299) #21 DYNC2H1 (ENSVURG00010013327) #22 PDGFD (ENSVURG00010013466) #24 ENSVURG00010013816 ENSVURG00010013820 ENSVURG00010013823 ENSVURG00010013829 ENSVURG00010013832 ENSVURG00010013838 ENSVURG00010013843 ENSVURG00010013851 ENSVURG00010013859 ENSVURG00010013860 ENSVURG00010013863 GRIA4 (ENSVURG00010013871) #29 MSANTD4 (ENSVURG00010013897) #30 KBTBD3 (ENSVURG00010013900) #31 Wallaby MODERN SPECIES 9353 ENSMEUG00000005554 #22 Tasmanian devil MODERN SPECIES 2 ANGPTL5 (ENSSHAG00000008135) #8 ENSSHAG00000008521 CFAP300 (ENSSHAG00000021373) #9 YAP1 (ENSSHAG00000031498) #10 ENSSHAG00000022169 #11 ENSSHAG00000031693 ENSSHAG00000012748 MMP20 (ENSSHAG00000013213) #16 MMP27 (ENSSHAG00000013837) #17 MMP8 (ENSSHAG00000013911) #18 MMP1 (ENSSHAG00000014131) #19 MMP3 (ENSSHAG00000014413) ENSSHAG00000014540 MMP13 (ENSSHAG00000014854) DCUN1D5 (ENSSHAG00000029020) #21 DYNC2H1 (ENSSHAG00000015321) #22 ENSSHAG00000027313 PDGFD (ENSSHAG00000029164) #24 ENSSHAG00000029767 ENSSHAG00000006626 ENSSHAG00000007243 ENSSHAG00000007740 ENSSHAG00000008224 ENSSHAG00000030890 ENSSHAG00000002417 ENSSHAG00000024823 GRIA4 (ENSSHAG00000013857) #29 MSANTD4 (ENSSHAG00000023893) #30 KBTBD3 (ENSSHAG00000023656) #31 AASDHPPT (ENSSHAG00000025896) #32 GUCY1A2 (ENSSHAG00000022853) Opossum MODERN SPECIES 3 CFAP300 (ENSMODG00000000567) #9 YAP1 (ENSMODG00000039367) #10 ENSMODG00000000587 ENSMODG00000000589 #11 ENSMODG00000000608 #11 ENSMODG00000000611 ENSMODG00000000623 MMP20 (ENSMODG00000000639) #16 MMP27 (ENSMODG00000000669) #17 MMP8 (ENSMODG00000000692) #18 MMP1 (ENSMODG00000000712) #19 MMP3 (ENSMODG00000000734) ENSMODG00000000767 MMP13 (ENSMODG00000000794) DCUN1D5 (ENSMODG00000000824) #21 DYNC2H1 (ENSMODG00000000925) #22 PDGFD (ENSMODG00000000942) #24 JRKL (ENSMODG00000024414) CCDC82 (ENSMODG00000000097) MAML2 (ENSMODG00000036741) MTMR2 (ENSMODG00000000116) CEP57 (ENSMODG00000000131) FAM76B (ENSMODG00000000139) SESN3 (ENSMODG00000000163) ENDOD1 (ENSMODG00000000165) ENSMODG00000000169 AMOTL1 (ENSMODG00000000180) PIWIL4 (ENSMODG00000000217) FUT4 (ENSMODG00000024373) ENSMODG00000028613 ENSMODG00000043171 Platypus MODERN SPECIES 12 ENSOANG00000010494 TRPC6 (ENSOANG00000010492) #7 ANGPTL5 (ENSOANG00000010491) #8 ENSOANG00000010490 CFAP300 (ENSOANG00000010489) #9 YAP1 (ENSOANG00000010488) #10 ENSOANG00000010486 #11 ENSOANG00000046987 ENSOANG00000047319 #14 MMP8 (ENSOANG00000010484) #18 MMP1 (ENSOANG00000010480) #19 ENSOANG00000010478 MMP13 (ENSOANG00000010477) ENSOANG00000021139 DCUN1D5 (ENSOANG00000010476) #21 DYNC2H1 (ENSOANG00000010474) #22 PDGFD (ENSOANG00000049229) #24 ENSOANG00000010472 GRIA4 (ENSOANG00000010470) #29 MSANTD4 (ENSOANG00000038526) #30 KBTBD3 (ENSOANG00000010467) #31 AASDHPPT (ENSOANG00000010465) #32 GUCY1A2 (ENSOANG00000010464) CWF19L2 (ENSOANG00000021142) ALKBH8 (ENSOANG00000010463) ELMOD1 (ENSOANG00000010462) ENSOANG00000048811 CUL5 (ENSOANG00000010459) ACAT1 (ENSOANG00000010458) NPAT (ENSOANG00000010457) ATM (ENSOANG00000006244) Sauria ANCESTRAL SPECIES 2 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00960000189669 ENSGT00390000014721 ENSGT00390000009664 ENSGT00730000111225 ENSGT00950000182887.C.a.a.b ENSGT00390000010184 ENSGT00390000000527 ENSGT01030000234590.B.a.b ENSGT00390000009313 Lepidosauria ANCESTRAL SPECIES 17 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a ##19 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00960000189669 ENSGT00390000000527 ENSGT01030000234590.B.a.b ENSGT00390000009313 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT01070000254066 Episquamata ANCESTRAL SPECIES 2 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a.ic ##19 ENSGT00940000154907.a.a.jc ##19 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00960000189669 ENSGT00390000009313.g.a.a ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 Laterata ANCESTRAL SPECIES 3 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a.ic ##19 ENSGT00940000154907.a.a.jc ##19 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.g.a.a ENSGT00390000009313.g.a.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 Common wall lizard MODERN SPECIES 12 CFAP300 (ENSPMRG00000009428) #9 YAP1 (ENSPMRG00000009439) #10 ENSPMRG00000009446 #11 ENSPMRG00000009452 ENSPMRG00000009459 ##19 ENSPMRG00000009481 ##19 ENSPMRG00000009487 MMP20 (ENSPMRG00000009495) #16 MMP27 (ENSPMRG00000009561) #17 MMP1 (ENSPMRG00000009900) #19 ENSPMRG00000009929 ENSPMRG00000009956 ENSPMRG00000010059 MMP13 (ENSPMRG00000010064) DCUN1D5 (ENSPMRG00000010069) #21 DYNC2H1 (ENSPMRG00000010165) #22 ENSPMRG00000010794 PDGFD (ENSPMRG00000010801) #24 ENSPMRG00000010822 ENSPMRG00000010827 ENSPMRG00000010837 ENSPMRG00000010840 ENSPMRG00000010846 GRIA4 (ENSPMRG00000010863) #29 ENSPMRG00000010895 ENSPMRG00000010897 #30 KBTBD3 (ENSPMRG00000010900) #31 AASDHPPT (ENSPMRG00000010906) #32 ENSPMRG00000010930 GUCY1A2 (ENSPMRG00000010932) ENSPMRG00000010936 Argentine black and white tegu MODERN SPECIES 24 CENPJ (ENSSMRG00000012225) RNF17 (ENSSMRG00000012222) ARHGAP20 (ENSSMRG00000012203) ENSSMRG00000012187 ENSSMRG00000012184 ENSSMRG00000012138 ENSSMRG00000012134 ##19 MMP20 (ENSSMRG00000012132) #16 MMP27 (ENSSMRG00000012075) #17 ENSSMRG00000011863 #19 ENSSMRG00000011808 #19 ENSSMRG00000011799 ENSSMRG00000011798 MMP13 (ENSSMRG00000011797) DCUN1D5 (ENSSMRG00000011796) #21 DYNC2H1 (ENSSMRG00000011354) #22 PDGFD (ENSSMRG00000011256) #24 GRIA4 (ENSSMRG00000011160) #29 MSANTD4 (ENSSMRG00000011059) #30 KBTBD3 (ENSSMRG00000011057) #31 AASDHPPT (ENSSMRG00000011056) #32 GUCY1A2 (ENSSMRG00000011053) ENSSMRG00000011037 ENSSMRG00000011036 CWF19L2 (ENSSMRG00000011005) ALKBH8 (ENSSMRG00000011004) ELMOD1 (ENSSMRG00000010965) SLC35F2 (ENSSMRG00000010961) RAB39A (ENSSMRG00000010960) CUL5 (ENSSMRG00000010946) ACAT1 (ENSSMRG00000010943) Toxicofera ANCESTRAL SPECIES 9 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a.ic ##19 ENSGT00940000154907.a.a.jc ##19 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.h.a.a ENSGT00960000189669 ENSGT00390000009313.g.a.a ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 Elapidae DUPLICATION Elapidae ANCESTRAL SPECIES ENSGT00940000154620.fc #22 Elapidae_a ANCESTRAL SPECIES 41 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a.ic ##19 ENSGT00940000154907.a.a.jc ##19 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620.fc #22 ENSGT00940000154620.gc #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT01010000230278 ENSGT00940000157765 ENSGT00390000009313.h.a.a ENSGT00960000189669 ENSGT00390000009313.g.a.a Acanthophiinae ANCESTRAL SPECIES ENSGT00940000154620.fc #22 Eastern brown snake DUPLICATION Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 33 ENSPTXG00000004953 CFAP300 (ENSPTXG00000004955) #9 YAP1 (ENSPTXG00000004962) #10 ENSPTXG00000004966 #11 TMEM123 (ENSPTXG00000004967) ENSPTXG00000004969 ##19 ENSPTXG00000004971 ##19 MMP20 (ENSPTXG00000004974) #16 MMP27 (ENSPTXG00000004979) #17 MMP1 (ENSPTXG00000005037) #19 ENSPTXG00000005052 ENSPTXG00000005053 MMP13 (ENSPTXG00000005055) ENSPTXG00000005057 DCUN1D5 (ENSPTXG00000005058) #21 ENSPTXG00000005059 #22 ENSPTXG00000005060 #22 ENSPTXG00000005062 #22 PDGFD (ENSPTXG00000005066) #24 GRIA4 (ENSPTXG00000005138) #29 MSANTD4 (ENSPTXG00000005661) #30 KBTBD3 (ENSPTXG00000005663) #31 AASDHPPT (ENSPTXG00000005664) #32 ENSPTXG00000005665 GUCY1A2 (ENSPTXG00000005666) ENSPTXG00000000158 ENSPTXG00000000172 Eastern brown snake MODERN SPECIES 33 YAP1 (ENSPTXG00000004962) #10 ENSPTXG00000004966 #11 TMEM123 (ENSPTXG00000004967) ENSPTXG00000004969 ##19 ENSPTXG00000004971 ##19 MMP20 (ENSPTXG00000004974) #16 MMP27 (ENSPTXG00000004979) #17 MMP1 (ENSPTXG00000005037) #19 ENSPTXG00000005052 ENSPTXG00000005053 MMP13 (ENSPTXG00000005055) ENSPTXG00000005057 DCUN1D5 (ENSPTXG00000005058) #21 ENSPTXG00000005059 #22 ENSPTXG00000005060 #22 ENSPTXG00000005062 #22 PDGFD (ENSPTXG00000005066) #24 GRIA4 (ENSPTXG00000005138) #29 MSANTD4 (ENSPTXG00000005661) #30 KBTBD3 (ENSPTXG00000005663) #31 AASDHPPT (ENSPTXG00000005664) #32 ENSPTXG00000005665 GUCY1A2 (ENSPTXG00000005666) ENSPTXG00000000158 ENSPTXG00000000172 Eastern brown snake MODERN SPECIES 33 CFAP300 (ENSPTXG00000004955) #9 YAP1 (ENSPTXG00000004962) #10 ENSPTXG00000004966 #11 TMEM123 (ENSPTXG00000004967) ENSPTXG00000004969 ##19 ENSPTXG00000004971 ##19 MMP20 (ENSPTXG00000004974) #16 MMP27 (ENSPTXG00000004979) #17 MMP1 (ENSPTXG00000005037) #19 ENSPTXG00000005052 ENSPTXG00000005053 MMP13 (ENSPTXG00000005055) ENSPTXG00000005057 DCUN1D5 (ENSPTXG00000005058) #21 ENSPTXG00000005059 #22 ENSPTXG00000005060 #22 ENSPTXG00000005062 #22 PDGFD (ENSPTXG00000005066) #24 GRIA4 (ENSPTXG00000005138) #29 MSANTD4 (ENSPTXG00000005661) #30 KBTBD3 (ENSPTXG00000005663) #31 AASDHPPT (ENSPTXG00000005664) #32 ENSPTXG00000005665 GUCY1A2 (ENSPTXG00000005666) ENSPTXG00000000158 ENSPTXG00000000172 Blue-lipped sea krait MODERN SPECIES 4372 DCUN1D5 (ENSLLTG00000016498) #21 ENSLLTG00000016502 #22 Elapidae ANCESTRAL SPECIES 10 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a.ic ##19 ENSGT00940000154907.a.a.jc ##19 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620.gc #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT01010000230278 ENSGT00940000157765 ENSGT00960000189669 ENSGT00390000009313.g.a.a ENSGT00390000009313.h.b.a.a.a.a.a ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a Indian cobra MODERN SPECIES 4 ANGPTL5 (ENSNNAG00000011981) #8 ENSNNAG00000011955 CFAP300 (ENSNNAG00000011854) #9 YAP1 (ENSNNAG00000011815) #10 ENSNNAG00000011785 #11 TMEM123 (ENSNNAG00000011768) ENSNNAG00000011741 ##19 MMP20 (ENSNNAG00000011646) #16 MMP27 (ENSNNAG00000011591) #17 MMP1 (ENSNNAG00000011567) #19 ENSNNAG00000011218 ENSNNAG00000011076 MMP13 (ENSNNAG00000011024) ENSNNAG00000010976 DCUN1D5 (ENSNNAG00000010943) #21 DYNC2H1 (ENSNNAG00000010349) #22 PDGFD (ENSNNAG00000010165) #24 GRIA4 (ENSNNAG00000009267) #29 MSANTD4 (ENSNNAG00000009206) #30 ENSNNAG00000009190 #31 AASDHPPT (ENSNNAG00000009056) #32 ENSNNAG00000009037 GUCY1A2 (ENSNNAG00000008983) ENSNNAG00000008963 ENSNNAG00000008944 ENSNNAG00000008926 ENSNNAG00000008899 ENSNNAG00000008864 ENSNNAG00000008840 ENSNNAG00000008824 ENSNNAG00000008804 Elapidae_a ANCESTRAL SPECIES 41 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a.ic ##19 ENSGT00940000154907.a.a.jc ##19 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620.fc #22 ENSGT00940000154620.gc #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT01010000230278 ENSGT00940000157765 ENSGT00390000009313.h.a.a ENSGT00960000189669 ENSGT00390000009313.g.a.a Blue-lipped sea krait MODERN SPECIES 1462 ENSLLTG00000011878 #22 Acanthophiinae ANCESTRAL SPECIES 42 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a.ic ##19 ENSGT00940000154907.a.a.jc ##19 ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620.gc #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT01010000230278 ENSGT00940000157765 ENSGT00390000009313.h.a.a ENSGT00960000189669 ENSGT00390000009313.g.a.a Mainland tiger snake MODERN SPECIES 75 ENSNSUG00000006043 ENSNSUG00000006044 CFAP300 (ENSNSUG00000006047) #9 YAP1 (ENSNSUG00000006048) #10 ENSNSUG00000006049 #11 TMEM123 (ENSNSUG00000006089) ENSNSUG00000006090 ##19 ENSNSUG00000006143 ##19 MMP20 (ENSNSUG00000006145) #16 MMP27 (ENSNSUG00000006147) #17 MMP1 (ENSNSUG00000006148) #19 ENSNSUG00000006288 MMP13 (ENSNSUG00000006375) ENSNSUG00000006379 DCUN1D5 (ENSNSUG00000006380) #21 DYNC2H1 (ENSNSUG00000006381) #22 PDGFD (ENSNSUG00000006385) #24 GRIA4 (ENSNSUG00000006438) #29 MSANTD4 (ENSNSUG00000006507) #30 KBTBD3 (ENSNSUG00000006515) #31 AASDHPPT (ENSNSUG00000006517) #32 GUCY1A2 (ENSNSUG00000006518) ENSNSUG00000006521 ENSNSUG00000006523 Lizard MODERN SPECIES 2 ENSACAG00000035332 YAP1 (ENSACAG00000012742) #10 ENSACAG00000012650 #11 ENSACAG00000012648 ENSACAG00000012635 ENSACAG00000026401 ##19 MMP20 (ENSACAG00000021026) #16 MMP27 (ENSACAG00000025988) #17 ENSACAG00000040392 #19 ENSACAG00000012632 #19 ENSACAG00000012628 ENSACAG00000039814 ENSACAG00000023762 MMP13 (ENSACAG00000012443) DCUN1D5 (ENSACAG00000012400) #21 DYNC2H1 (ENSACAG00000011923) #22 PDGFD (ENSACAG00000011867) #24 GRIA4 (ENSACAG00000011167) #29 MSANTD4 (ENSACAG00000011157) #30 KBTBD3 (ENSACAG00000011146) #31 AASDHPPT (ENSACAG00000011121) #32 ENSACAG00000035759 GUCY1A2 (ENSACAG00000011056) ENSACAG00000036271 ENSACAG00000028881 ENSACAG00000042797 ENSACAG00000039444 ENSACAG00000035285 ENSACAG00000028389 ENSACAG00000045159 ENSACAG00000011039 tuatara MODERN SPECIES 1676 MMP13 (ENSSPUG00000010429) ENSSPUG00000010470 DCUN1D5 (ENSSPUG00000010486) #21 DYNC2H1 (ENSSPUG00000010539) #22 PDGFD (ENSSPUG00000010745) #24 Archelosauria ANCESTRAL SPECIES ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00960000189669 ENSGT00390000009313.i.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 Cryptodira ANCESTRAL SPECIES ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00960000189669 ENSGT00390000009313.i.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 Testudinoidea ANCESTRAL SPECIES 1 ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491.a.a ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765.a ENSGT00960000189669 ENSGT00390000009313.i.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 Emydidae ANCESTRAL SPECIES 19 ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b.h.a #19 ENSGT00940000154907.b.h.b #19 ENSGT00940000166491.a.a ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765.a ENSGT00960000189669 ENSGT00390000009313.i.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Three-toed box turtle MODERN SPECIES 65 MMP13 (ENSTMTG00000008496) ENSTMTG00000008544 DCUN1D5 (ENSTMTG00000008801) #21 DYNC2H1 (ENSTMTG00000008847) #22 PDGFD (ENSTMTG00000009069) #24 ENSTMTG00000009152 GRIA4 (ENSTMTG00000009194) #29 MSANTD4 (ENSTMTG00000009855) #30 KBTBD3 (ENSTMTG00000009877) #31 AASDHPPT (ENSTMTG00000009893) #32 GUCY1A2 (ENSTMTG00000009909) CWF19L2 (ENSTMTG00000009945) ALKBH8 (ENSTMTG00000009987) ELMOD1 (ENSTMTG00000010019) SLC35F2 (ENSTMTG00000010053) RAB39A (ENSTMTG00000010083) CUL5 (ENSTMTG00000010107) ACAT1 (ENSTMTG00000010178) NPAT (ENSTMTG00000010201) painted turtle MODERN SPECIES 2367 ENSCPBG00000027411 TRPC6 (ENSCPBG00000027413) #7 ANGPTL5 (ENSCPBG00000027415) #8 CEP126 (ENSCPBG00000027420) YAP1 (ENSCPBG00000027430) #10 ENSCPBG00000027435 #11 TMEM123 (ENSCPBG00000027438) ENSCPBG00000027439 ##19 MMP27 (ENSCPBG00000027441) #17 ENSCPBG00000027443 #19 ENSCPBG00000027444 #19 ENSCPBG00000027446 MMP13 (ENSCPBG00000027449) ENSCPBG00000027454 DCUN1D5 (ENSCPBG00000027458) #21 DYNC2H1 (ENSCPBG00000027489) #22 ADCYAP1 (ENSCPBG00000027547) YES1 (ENSCPBG00000027548) ENOSF1 (ENSCPBG00000027551) TYMS (ENSCPBG00000027552) CLUL1 (ENSCPBG00000027553) COLEC12 (ENSCPBG00000027554) THOC1 (ENSCPBG00000027558) USP14 (ENSCPBG00000027561) ROCK1 (ENSCPBG00000027564) ENSCPBG00000027568 GREB1L (ENSCPBG00000027577) ESCO1 (ENSCPBG00000027599) ABHD3 (ENSCPBG00000027604) MIB1 (ENSCPBG00000027607) GATA6 (ENSCPBG00000027614) Testudinidae ANCESTRAL SPECIES ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491.a.b ENSGT00940000166491.a.a ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765.a ENSGT00390000009313.i.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000168471 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Goode s thornscrub tortoise MODERN SPECIES TRPC6 (ENSGEVG00005008171) #7 ANGPTL5 (ENSGEVG00005008220) #8 CEP126 (ENSGEVG00005008250) CFAP300 (ENSGEVG00005008286) #9 YAP1 (ENSGEVG00005008309) #10 ENSGEVG00005008335 #11 MMP7 (ENSGEVG00005008346) #14 MMP27 (ENSGEVG00005008369) #17 MMP1 (ENSGEVG00005008386) #19 ENSGEVG00005008403 ENSGEVG00005008434 ENSGEVG00005008551 ENSGEVG00005009550 MMP13 (ENSGEVG00005009634) DCUN1D5 (ENSGEVG00005009736) #21 DYNC2H1 (ENSGEVG00005009816) #22 PDGFD (ENSGEVG00005010619) #24 GRIA4 (ENSGEVG00005010983) #29 MSANTD4 (ENSGEVG00005012006) #30 ENSGEVG00005012021 KBTBD3 (ENSGEVG00005012066) #31 AASDHPPT (ENSGEVG00005012085) #32 GUCY1A2 (ENSGEVG00005012110) ENSGEVG00005012190 CWF19L2 (ENSGEVG00005012229) ALKBH8 (ENSGEVG00005012274) ELMOD1 (ENSGEVG00005012329) SLC35F2 (ENSGEVG00005012399) RAB39A (ENSGEVG00005012426) CUL5 (ENSGEVG00005012461) ACAT1 (ENSGEVG00005012589) Abingdon island giant tortoise MODERN SPECIES 2209 ENSCABG00000003890 ENSCABG00000003880 MMP13 (ENSCABG00000003737) DCUN1D5 (ENSCABG00000003712) #21 DYNC2H1 (ENSCABG00000003673) #22 Chinese turtle MODERN SPECIES 1126 ENSPSIG00000016199 #17 ENSPSIG00000016180 #17 MMP1 (ENSPSIG00000016132) #19 ENSPSIG00000016058 ENSPSIG00000015883 MMP13 (ENSPSIG00000015778) DCUN1D5 (ENSPSIG00000015736) #21 ENSPSIG00000001205 DYNC2H1 (ENSPSIG00000013885) #22 PDGFD (ENSPSIG00000013596) #24 GRIA4 (ENSPSIG00000013038) #29 MSANTD4 (ENSPSIG00000013029) #30 KBTBD3 (ENSPSIG00000013026) #31 AASDHPPT (ENSPSIG00000012757) #32 GUCY1A2 (ENSPSIG00000012663) ENSPSIG00000012551 CWF19L2 (ENSPSIG00000011670) ALKBH8 (ENSPSIG00000011627) ELMOD1 (ENSPSIG00000011240) SLC35F2 (ENSPSIG00000011203) ENSPSIG00000001189 RAB39A (ENSPSIG00000011182) CUL5 (ENSPSIG00000009759) ACAT1 (ENSPSIG00000008845) Archosauria ANCESTRAL SPECIES 2 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000156340.b ENSGT00940000161277 #16 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Australian saltwater crocodile MODERN SPECIES 27 CEP126 (ENSCPRG00005014875) CFAP300 (ENSCPRG00005014867) #9 YAP1 (ENSCPRG00005014865) #10 ENSCPRG00005014841 #11 TMEM123 (ENSCPRG00005014837) MMP7 (ENSCPRG00005014833) #14 ENSCPRG00005014829 #14 ENSCPRG00005014827 MMP20 (ENSCPRG00005014825) #16 MMP27 (ENSCPRG00005014809) #17 ENSCPRG00005014787 #19 ENSCPRG00005014782 #19 ENSCPRG00005014772 MMP13 (ENSCPRG00005014705) DCUN1D5 (ENSCPRG00005014689) #21 DYNC2H1 (ENSCPRG00005014624) #22 PDGFD (ENSCPRG00005014563) #24 ENSCPRG00005014543 GRIA4 (ENSCPRG00005014529) #29 ENSCPRG00005014505 MSANTD4 (ENSCPRG00005014484) #30 KBTBD3 (ENSCPRG00005014482) #31 AASDHPPT (ENSCPRG00005014479) #32 GUCY1A2 (ENSCPRG00005014457) ENSCPRG00005014405 ENSCPRG00005014368 ENSCPRG00005014364 ELMOD1 (ENSCPRG00005014358) SLC35F2 (ENSCPRG00005014342) RAB39A (ENSCPRG00005014334) CUL5 (ENSCPRG00005014213) Aves ANCESTRAL SPECIES ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00390000009313.i.b.a ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 African ostrich MODERN SPECIES 1026 YAP1 (ENSSCUG00000016338) #10 ENSSCUG00000016336 #11 ENSSCUG00000016331 ENSSCUG00000016328 ##19 MMP27 (ENSSCUG00000016323) #17 MMP1 (ENSSCUG00000016322) #19 ENSSCUG00000016319 ENSSCUG00000016315 MMP13 (ENSSCUG00000016309) DCUN1D5 (ENSSCUG00000016305) #21 DYNC2H1 (ENSSCUG00000016290) #22 Neognathae ANCESTRAL SPECIES 1 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00390000009313.i.b.a ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 Neognathae_b ANCESTRAL SPECIES ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00390000009313.i.b.a ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 Neognathae_c ANCESTRAL SPECIES 11 ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E ENSGT00390000012388 Golden eagle MODERN SPECIES 10 PGR (ENSACCG00020008798) TRPC6 (ENSACCG00020008765) #7 ANGPTL5 (ENSACCG00020008738) #8 CEP126 (ENSACCG00020008718) CFAP300 (ENSACCG00020008702) #9 YAP1 (ENSACCG00020008686) #10 ENSACCG00020008627 #11 TMEM123 (ENSACCG00020008603) ENSACCG00020008585 MMP27 (ENSACCG00020008570) #17 MMP1 (ENSACCG00020008549) #19 ENSACCG00020008528 ENSACCG00020008499 MMP13 (ENSACCG00020008442) DCUN1D5 (ENSACCG00020008426) #21 DYNC2H1 (ENSACCG00020008188) #22 PDGFD (ENSACCG00020007995) #24 GRIA4 (ENSACCG00020007893) #29 MSANTD4 (ENSACCG00020007849) #30 KBTBD3 (ENSACCG00020007839) #31 AASDHPPT (ENSACCG00020007826) #32 GUCY1A2 (ENSACCG00020007814) ENSACCG00020007804 CWF19L2 (ENSACCG00020007775) ALKBH8 (ENSACCG00020007723) ELMOD1 (ENSACCG00020007666) ENSACCG00020007640 SLC35F2 (ENSACCG00020007627) RAB39A (ENSACCG00020007616) CUL5 (ENSACCG00020007549) ACAT1 (ENSACCG00020007443) Kakapo MODERN SPECIES 11 ARHGAP42 (ENSSHBG00005003000) PGR (ENSSHBG00005002963) TRPC6 (ENSSHBG00005002929) #7 ANGPTL5 (ENSSHBG00005002883) #8 ENSSHBG00005002857 ENSSHBG00005002847 #9 YAP1 (ENSSHBG00005002837) #10 ENSSHBG00005002816 #11 TMEM123 (ENSSHBG00005002791) MMP7 (ENSSHBG00005002758) #14 MMP27 (ENSSHBG00005002736) #17 MMP1 (ENSSHBG00005002695) #19 ENSSHBG00005002636 MMP13 (ENSSHBG00005002584) DCUN1D5 (ENSSHBG00005002553) #21 DYNC2H1 (ENSSHBG00005002058) #22 PDGFD (ENSSHBG00005001760) #24 GRIA4 (ENSSHBG00005001636) #29 MSANTD4 (ENSSHBG00005001565) #30 KBTBD3 (ENSSHBG00005001552) #31 AASDHPPT (ENSSHBG00005001507) #32 GUCY1A2 (ENSSHBG00005001462) CWF19L2 (ENSSHBG00005001417) ALKBH8 (ENSSHBG00005000442) ELMOD1 (ENSSHBG00005014397) ENSSHBG00005014387 ENSSHBG00005014382 SLC35F2 (ENSSHBG00005014363) RAB39A (ENSSHBG00005014353) CUL5 (ENSSHBG00005014329) ACAT1 (ENSSHBG00005014305) Passeriformes ANCESTRAL SPECIES 1 ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00390000009313.i.b.a ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Passeriformes_d ANCESTRAL SPECIES 1 ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00390000009313.i.b.a ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Passeriformes_g ANCESTRAL SPECIES 2 ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00390000009313.i.b.a ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01040000243635 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 Medium ground finch MODERN SPECIES 5 ARHGAP42 (ENSGFOG00000003106) TRPC6 (ENSGFOG00000003038) #7 ANGPTL5 (ENSGFOG00000003011) #8 ENSGFOG00000002958 CFAP300 (ENSGFOG00000002923) #9 YAP1 (ENSGFOG00000002832) #10 ENSGFOG00000002791 #11 TMEM123 (ENSGFOG00000002771) ENSGFOG00000002758 MMP27 (ENSGFOG00000002634) #17 MMP1 (ENSGFOG00000002501) #19 ENSGFOG00000002382 ENSGFOG00000002073 MMP13 (ENSGFOG00000002018) DCUN1D5 (ENSGFOG00000001988) #21 DYNC2H1 (ENSGFOG00000000922) #22 PDGFD (ENSGFOG00000000011) #24 GRIA4 (ENSGFOG00000008060) #29 MSANTD4 (ENSGFOG00000008043) #30 KBTBD3 (ENSGFOG00000008040) #31 AASDHPPT (ENSGFOG00000008033) #32 GUCY1A2 (ENSGFOG00000008028) ENSGFOG00000008024 ENSGFOG00000008018 CWF19L2 (ENSGFOG00000008003) ALKBH8 (ENSGFOG00000007993) ELMOD1 (ENSGFOG00000007977) ENSGFOG00000007975 SLC35F2 (ENSGFOG00000007964) RAB39A (ENSGFOG00000007927) CUL5 (ENSGFOG00000007911) Passeroidea ANCESTRAL SPECIES 5 ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000154907.a.a ##19 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00390000009313.i.b.a ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01040000243635 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 Zebra finch MODERN SPECIES TRPC6 (ENSTGUG00000012766) #7 ENSTGUG00000022925 ANGPTL5 (ENSTGUG00000024680) #8 ENSTGUG00000012764 CFAP300 (ENSTGUG00000012760) #9 YAP1 (ENSTGUG00000012754) #10 ENSTGUG00000012745 #11 TMEM123 (ENSTGUG00000027337) ENSTGUG00000018460 MMP27 (ENSTGUG00000023611) #17 MMP1 (ENSTGUG00000012737) #19 ENSTGUG00000012735 ENSTGUG00000028841 MMP13 (ENSTGUG00000012726) DCUN1D5 (ENSTGUG00000020472) #21 DYNC2H1 (ENSTGUG00000012697) #22 PDGFD (ENSTGUG00000012693) #24 GRIA4 (ENSTGUG00000012676) #29 MSANTD4 (ENSTGUG00000027619) #30 KBTBD3 (ENSTGUG00000027073) #31 AASDHPPT (ENSTGUG00000020920) #32 GUCY1A2 (ENSTGUG00000012667) ENSTGUG00000012665 ENSTGUG00000024944 CWF19L2 (ENSTGUG00000012664) ALKBH8 (ENSTGUG00000012660) ELMOD1 (ENSTGUG00000012657) ENSTGUG00000012656 SLC35F2 (ENSTGUG00000012641) RAB39A (ENSTGUG00000029732) CUL5 (ENSTGUG00000012650) Common canary MODERN SPECIES 4 PGR (ENSSCAG00000003909) TRPC6 (ENSSCAG00000003932) #7 ANGPTL5 (ENSSCAG00000003952) #8 ENSSCAG00000003957 CFAP300 (ENSSCAG00000003962) #9 YAP1 (ENSSCAG00000003972) #10 ENSSCAG00000003981 #11 TMEM123 (ENSSCAG00000003984) ENSSCAG00000003992 ##19 MMP27 (ENSSCAG00000003998) #17 MMP1 (ENSSCAG00000004003) #19 ENSSCAG00000004010 ENSSCAG00000004017 MMP13 (ENSSCAG00000004033) DCUN1D5 (ENSSCAG00000004037) #21 DYNC2H1 (ENSSCAG00000004049) #22 PDGFD (ENSSCAG00000004095) #24 GRIA4 (ENSSCAG00000004160) #29 MSANTD4 (ENSSCAG00000004441) #30 KBTBD3 (ENSSCAG00000004445) #31 AASDHPPT (ENSSCAG00000004448) #32 GUCY1A2 (ENSSCAG00000004475) ENSSCAG00000004484 ENSSCAG00000004486 CWF19L2 (ENSSCAG00000004490) ALKBH8 (ENSSCAG00000004497) ELMOD1 (ENSSCAG00000004505) SLC35F2 (ENSSCAG00000004515) DDX10 (ENSSCAG00000004532) ENSSCAG00000004593 POGLUT3 (ENSSCAG00000004603) Flycatcher MODERN SPECIES PGR (ENSFALG00000000354) TRPC6 (ENSFALG00000000356) #7 ANGPTL5 (ENSFALG00000000357) #8 ENSFALG00000000358 CFAP300 (ENSFALG00000000361) #9 YAP1 (ENSFALG00000000364) #10 ENSFALG00000000370 #11 ENSFALG00000000371 ENSFALG00000000372 ##19 MMP27 (ENSFALG00000000375) #17 MMP1 (ENSFALG00000000382) #19 ENSFALG00000000394 ENSFALG00000000397 MMP13 (ENSFALG00000000400) DCUN1D5 (ENSFALG00000000403) #21 DYNC2H1 (ENSFALG00000000411) #22 PDGFD (ENSFALG00000000415) #24 GRIA4 (ENSFALG00000000431) #29 MSANTD4 (ENSFALG00000000440) #30 KBTBD3 (ENSFALG00000023390) #31 AASDHPPT (ENSFALG00000000443) #32 GUCY1A2 (ENSFALG00000000486) ENSFALG00000000482 CWF19L2 (ENSFALG00000000479) ALKBH8 (ENSFALG00000000478) ELMOD1 (ENSFALG00000000474) SLC35F2 (ENSFALG00000000466) RAB39A (ENSFALG00000026560) CUL5 (ENSFALG00000000461) ENSFALG00000014232 ACAT1 (ENSFALG00000000459) Great tit DUPLICATION Great tit MODERN SPECIES PGR (ENSPMJG00000017851) TRPC6 (ENSPMJG00000017850) #7 ANGPTL5 (ENSPMJG00000017849) #8 ENSPMJG00000017848 CFAP300 (ENSPMJG00000017846) #9 YAP1 (ENSPMJG00000017845) #10 ENSPMJG00000017843 #11 TMEM123 (ENSPMJG00000017842) ENSPMJG00000017841 ##19 MMP27 (ENSPMJG00000017840) #17 MMP1 (ENSPMJG00000017839) #19 ENSPMJG00000017838 ENSPMJG00000017837 MMP13 (ENSPMJG00000017836) DCUN1D5 (ENSPMJG00000017835) #21 ENSPMJG00000017834 #22 ENSPMJG00000017833 #22 PDGFD (ENSPMJG00000017831) #24 GRIA4 (ENSPMJG00000017826) #29 MSANTD4 (ENSPMJG00000017825) #30 KBTBD3 (ENSPMJG00000017824) #31 AASDHPPT (ENSPMJG00000017823) #32 GUCY1A2 (ENSPMJG00000017822) ENSPMJG00000017821 ENSPMJG00000017820 CWF19L2 (ENSPMJG00000017819) ALKBH8 (ENSPMJG00000017818) ELMOD1 (ENSPMJG00000017817) SLC35F2 (ENSPMJG00000017792) RAB39A (ENSPMJG00000017791) CUL5 (ENSPMJG00000017790) Great tit MODERN SPECIES TRPC6 (ENSPMJG00000017850) #7 ANGPTL5 (ENSPMJG00000017849) #8 ENSPMJG00000017848 CFAP300 (ENSPMJG00000017846) #9 YAP1 (ENSPMJG00000017845) #10 ENSPMJG00000017843 #11 TMEM123 (ENSPMJG00000017842) ENSPMJG00000017841 ##19 MMP27 (ENSPMJG00000017840) #17 MMP1 (ENSPMJG00000017839) #19 ENSPMJG00000017838 ENSPMJG00000017837 MMP13 (ENSPMJG00000017836) DCUN1D5 (ENSPMJG00000017835) #21 ENSPMJG00000017834 #22 ENSPMJG00000017833 #22 PDGFD (ENSPMJG00000017831) #24 GRIA4 (ENSPMJG00000017826) #29 MSANTD4 (ENSPMJG00000017825) #30 KBTBD3 (ENSPMJG00000017824) #31 AASDHPPT (ENSPMJG00000017823) #32 GUCY1A2 (ENSPMJG00000017822) ENSPMJG00000017821 ENSPMJG00000017820 CWF19L2 (ENSPMJG00000017819) ALKBH8 (ENSPMJG00000017818) ELMOD1 (ENSPMJG00000017817) SLC35F2 (ENSPMJG00000017792) RAB39A (ENSPMJG00000017791) CUL5 (ENSPMJG00000017790) ACAT1 (ENSPMJG00000017787) Galloanserae ANCESTRAL SPECIES 1 ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Anatidae ANCESTRAL SPECIES 16 ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903 #14 ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Duck DUPLICATION Duck DUPLICATION Duck MODERN SPECIES ANGPTL5 (ENSAPLG00000004584) #8 ENSAPLG00000004690 CFAP300 (ENSAPLG00000004970) #9 YAP1 (ENSAPLG00000005062) #10 ENSAPLG00000005387 #11 TMEM123 (ENSAPLG00000005784) MMP7 (ENSAPLG00000005792) #14 MMP27 (ENSAPLG00000005931) #17 MMP1 (ENSAPLG00000005987) #19 ENSAPLG00000026248 ENSAPLG00000006797 MMP13 (ENSAPLG00000007468) DCUN1D5 (ENSAPLG00000008281) #21 ENSAPLG00000008375 #22 ENSAPLG00000020307 #22 ENSAPLG00000030587 #22 ENSAPLG00000029249 PDGFD (ENSAPLG00000009485) #24 GRIA4 (ENSAPLG00000012015) #29 MSANTD4 (ENSAPLG00000011957) #30 KBTBD3 (ENSAPLG00000018868) #31 AASDHPPT (ENSAPLG00000011885) #32 ENSAPLG00000028324 GUCY1A2 (ENSAPLG00000016270) ENSAPLG00000019183 CWF19L2 (ENSAPLG00000016072) ALKBH8 (ENSAPLG00000015851) ELMOD1 (ENSAPLG00000015529) SLC35F2 (ENSAPLG00000015302) RAB39A (ENSAPLG00000015262) CUL5 (ENSAPLG00000015028) Duck MODERN SPECIES PGR (ENSAPLG00000003887) TRPC6 (ENSAPLG00000004017) #7 ANGPTL5 (ENSAPLG00000004584) #8 ENSAPLG00000004690 CFAP300 (ENSAPLG00000004970) #9 YAP1 (ENSAPLG00000005062) #10 ENSAPLG00000005387 #11 TMEM123 (ENSAPLG00000005784) MMP7 (ENSAPLG00000005792) #14 MMP27 (ENSAPLG00000005931) #17 MMP1 (ENSAPLG00000005987) #19 ENSAPLG00000026248 ENSAPLG00000006797 MMP13 (ENSAPLG00000007468) DCUN1D5 (ENSAPLG00000008281) #21 ENSAPLG00000008375 #22 ENSAPLG00000020307 #22 ENSAPLG00000030587 #22 ENSAPLG00000029249 PDGFD (ENSAPLG00000009485) #24 GRIA4 (ENSAPLG00000012015) #29 MSANTD4 (ENSAPLG00000011957) #30 KBTBD3 (ENSAPLG00000018868) #31 AASDHPPT (ENSAPLG00000011885) #32 ENSAPLG00000028324 GUCY1A2 (ENSAPLG00000016270) ENSAPLG00000019183 CWF19L2 (ENSAPLG00000016072) ALKBH8 (ENSAPLG00000015851) ELMOD1 (ENSAPLG00000015529) SLC35F2 (ENSAPLG00000015302) Duck MODERN SPECIES TRPC6 (ENSAPLG00000004017) #7 ANGPTL5 (ENSAPLG00000004584) #8 ENSAPLG00000004690 CFAP300 (ENSAPLG00000004970) #9 YAP1 (ENSAPLG00000005062) #10 ENSAPLG00000005387 #11 TMEM123 (ENSAPLG00000005784) MMP7 (ENSAPLG00000005792) #14 MMP27 (ENSAPLG00000005931) #17 MMP1 (ENSAPLG00000005987) #19 ENSAPLG00000026248 ENSAPLG00000006797 MMP13 (ENSAPLG00000007468) DCUN1D5 (ENSAPLG00000008281) #21 ENSAPLG00000008375 #22 ENSAPLG00000020307 #22 ENSAPLG00000030587 #22 ENSAPLG00000029249 PDGFD (ENSAPLG00000009485) #24 GRIA4 (ENSAPLG00000012015) #29 MSANTD4 (ENSAPLG00000011957) #30 KBTBD3 (ENSAPLG00000018868) #31 AASDHPPT (ENSAPLG00000011885) #32 ENSAPLG00000028324 GUCY1A2 (ENSAPLG00000016270) ENSAPLG00000019183 CWF19L2 (ENSAPLG00000016072) ALKBH8 (ENSAPLG00000015851) ELMOD1 (ENSAPLG00000015529) SLC35F2 (ENSAPLG00000015302) RAB39A (ENSAPLG00000015262) Pink-footed goose MODERN SPECIES 135 ENSABRG00000009163 ANGPTL5 (ENSABRG00000009100) #8 ENSABRG00000009078 CFAP300 (ENSABRG00000009072) #9 YAP1 (ENSABRG00000009040) #10 ENSABRG00000009019 #11 TMEM123 (ENSABRG00000009015) MMP7 (ENSABRG00000008989) #14 MMP27 (ENSABRG00000008965) #17 MMP1 (ENSABRG00000008947) #19 ENSABRG00000008802 ENSABRG00000008771 MMP13 (ENSABRG00000008766) DCUN1D5 (ENSABRG00000008746) #21 DYNC2H1 (ENSABRG00000008204) #22 PDGFD (ENSABRG00000008147) #24 ENSABRG00000008125 ENSABRG00000008118 ENSABRG00000008103 #29 ENSABRG00000008076 MSANTD4 (ENSABRG00000008069) #30 KBTBD3 (ENSABRG00000008057) #31 AASDHPPT (ENSABRG00000008045) #32 GUCY1A2 (ENSABRG00000008026) Phasianidae ANCESTRAL SPECIES ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00950000182865.b.b.b.c.a.i.a.b.b ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Japanese quail MODERN SPECIES ENSCJPG00005003791 ANGPTL5 (ENSCJPG00005003777) #8 ENSCJPG00005003770 CFAP300 (ENSCJPG00005003768) #9 YAP1 (ENSCJPG00005003761) #10 ENSCJPG00005003758 ENSCJPG00005003757 #11 TMEM123 (ENSCJPG00005003755) ENSCJPG00005003728 MMP27 (ENSCJPG00005003727) #17 MMP1 (ENSCJPG00005003596) #19 ENSCJPG00005003595 ENSCJPG00005003593 MMP13 (ENSCJPG00005003591) DCUN1D5 (ENSCJPG00005003587) #21 ENSCJPG00005003535 #22 PDGFD (ENSCJPG00005003527) #24 ENSCJPG00005003519 GRIA4 (ENSCJPG00005003513) #29 MSANTD4 (ENSCJPG00005003512) #30 KBTBD3 (ENSCJPG00005003501) #31 AASDHPPT (ENSCJPG00005003500) #32 ENSCJPG00005003497 GUCY1A2 (ENSCJPG00005003494) ENSCJPG00005003492 CWF19L2 (ENSCJPG00005003482) ALKBH8 (ENSCJPG00005003481) ELMOD1 (ENSCJPG00005003480) SLC35F2 (ENSCJPG00005003450) ENSCJPG00005003449 CUL5 (ENSCJPG00005003447) Phasianidae_b ANCESTRAL SPECIES ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00950000182865.b.b.b.c.a.i.a.b.b ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000161159 #17 ENSGT00940000154907.b #19 ENSGT00940000166491 ENSGT00940000165562 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00390000009313.i.b.b ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000159933 ENSGT00940000156648 ENSGT01030000234626.E Chicken MODERN SPECIES ENSGALG00010007959 ENSGALG00010007949 ANGPTL5 (ENSGALG00010007937) #8 ENSGALG00010007933 C11orf70 (ENSGALG00010007928) #9 YAP1 (ENSGALG00010007923) #10 BIRC2 (ENSGALG00010007658) #11 TMEM123 (ENSGALG00010007640) MMP7 (ENSGALG00010007586) MMP27 (ENSGALG00010007575) #17 MMP1 (ENSGALG00010007571) #19 ENSGALG00010007554 MMP10 (ENSGALG00010007546) MMP13 (ENSGALG00010007330) DCUN1D5 (ENSGALG00010007532) #21 DYNC2H1 (ENSGALG00010005265) #22 PDGFD (ENSGALG00010005249) #24 ENSGALG00010005230 GRIA4 (ENSGALG00010005223) #29 MSANTD4 (ENSGALG00010005191) #30 KBTBD3 (ENSGALG00010005187) #31 AASDHPPT (ENSGALG00010005177) #32 GUCY1A2 (ENSGALG00010005167) VMO1 (ENSGALG00010005161) CWF19L2 (ENSGALG00010005154) ALKBH8 (ENSGALG00010004717) ELMOD1 (ENSGALG00010004669) SLN (ENSGALG00010004973) SLC35F2 (ENSGALG00010004967) RAB39A (ENSGALG00010004949) CUL5 (ENSGALG00010004901) Turkey DUPLICATION Turkey DUPLICATION Turkey DUPLICATION Turkey MODERN SPECIES ENSMGAG00000015155 ENSMGAG00000015156 ENSMGAG00000015157 ENSMGAG00000017848 ENSMGAG00000015158 ENSMGAG00000015159 ENSMGAG00000015160 #32 ENSMGAG00000015161 #31 ENSMGAG00000015162 #30 ENSMGAG00000019678 ENSMGAG00000021383 ENSMGAG00000018928 ENSMGAG00000021804 #22 ENSMGAG00000019247 #22 ENSMGAG00000015167 #22 ENSMGAG00000016922 #22 DCUN1D5 (ENSMGAG00000015168) #21 ENSMGAG00000020240 ENSMGAG00000016562 MMP13 (ENSMGAG00000015169) ENSMGAG00000015171 #17 ENSMGAG00000015170 #19 ENSMGAG00000015172 ENSMGAG00000015173 ENSMGAG00000015174 #11 ENSMGAG00000015175 #10 ENSMGAG00000017853 ENSMGAG00000015176 #9 ENSMGAG00000015177 ENSMGAG00000015178 #8 ENSMGAG00000015179 #7 Turkey MODERN SPECIES ENSMGAG00000015613 ENSMGAG00000015153 ENSMGAG00000015155 ENSMGAG00000015156 ENSMGAG00000015157 ENSMGAG00000017848 ENSMGAG00000015158 ENSMGAG00000015159 ENSMGAG00000015160 #32 ENSMGAG00000015161 #31 ENSMGAG00000015162 #30 ENSMGAG00000019678 ENSMGAG00000021383 ENSMGAG00000018928 ENSMGAG00000021804 #22 ENSMGAG00000019247 #22 ENSMGAG00000015167 #22 ENSMGAG00000016922 #22 DCUN1D5 (ENSMGAG00000015168) #21 ENSMGAG00000020240 ENSMGAG00000016562 MMP13 (ENSMGAG00000015169) ENSMGAG00000015171 #17 ENSMGAG00000015170 #19 ENSMGAG00000015172 ENSMGAG00000015173 ENSMGAG00000015174 #11 ENSMGAG00000015175 #10 ENSMGAG00000017853 ENSMGAG00000015176 #9 ENSMGAG00000015177 Turkey MODERN SPECIES ENSMGAG00000015153 ENSMGAG00000015155 ENSMGAG00000015156 ENSMGAG00000015157 ENSMGAG00000017848 ENSMGAG00000015158 ENSMGAG00000015159 ENSMGAG00000015160 #32 ENSMGAG00000015161 #31 ENSMGAG00000015162 #30 ENSMGAG00000019678 ENSMGAG00000021383 ENSMGAG00000018928 ENSMGAG00000021804 #22 ENSMGAG00000019247 #22 ENSMGAG00000015167 #22 ENSMGAG00000016922 #22 DCUN1D5 (ENSMGAG00000015168) #21 ENSMGAG00000020240 ENSMGAG00000016562 MMP13 (ENSMGAG00000015169) ENSMGAG00000015171 #17 ENSMGAG00000015170 #19 ENSMGAG00000015172 ENSMGAG00000015173 ENSMGAG00000015174 #11 ENSMGAG00000015175 #10 ENSMGAG00000017853 ENSMGAG00000015176 #9 ENSMGAG00000015177 ENSMGAG00000015178 #8 Turkey MODERN SPECIES ENSMGAG00000015152 ENSMGAG00000015613 ENSMGAG00000015153 ENSMGAG00000015155 ENSMGAG00000015156 ENSMGAG00000015157 ENSMGAG00000017848 ENSMGAG00000015158 ENSMGAG00000015159 ENSMGAG00000015160 #32 ENSMGAG00000015161 #31 ENSMGAG00000015162 #30 ENSMGAG00000019678 ENSMGAG00000021383 ENSMGAG00000018928 ENSMGAG00000021804 #22 ENSMGAG00000019247 #22 ENSMGAG00000015167 #22 ENSMGAG00000016922 #22 DCUN1D5 (ENSMGAG00000015168) #21 ENSMGAG00000020240 ENSMGAG00000016562 MMP13 (ENSMGAG00000015169) ENSMGAG00000015171 #17 ENSMGAG00000015170 #19 ENSMGAG00000015172 ENSMGAG00000015173 ENSMGAG00000015174 #11 ENSMGAG00000015175 #10 ENSMGAG00000017853 ENSMGAG00000015176 #9 Anura ANCESTRAL SPECIES 28 ENSGT00940000159713 ENSGT01060000248588.a.d.a #7 ENSGT00940000161966 #8 ENSGT00390000013786 ENSGT00510000047559 #9 ENSGT00510000046760.a #10 ENSGT00940000154175 #11 ENSGT00530000063929.b ENSGT00940000160903.a #14 ENSGT00940000160903.b #14 ENSGT00940000161277 #16 ENSGT00940000165562 ENSGT00940000154907.b #19 ENSGT00940000157450 ENSGT00940000156155 #21 ENSGT00940000154620 #22 ENSGT00940000159575 #24 ENSGT00940000155677.b #29 ENSGT00440000039469 #30 ENSGT00940000158415 #31 ENSGT00390000004663 #32 ENSGT00940000157765 ENSGT00940000155627 ENSGT00940000158563 ENSGT00940000159782 ENSGT01070000254066 ENSGT00390000015655.a ENSGT00940000156648 ENSGT01030000234626.E ENSGT00390000012388 ENSGT00670000098061 Frog MODERN SPECIES 2 tmem123 (ENSXETG00000040034) mmp3 (ENSXETG00000022185) #14 ENSXETG00000038461 #14 ENSXETG00000046841 ENSXETG00000042404 ENSXETG00000040194 #14 mmp13 (ENSXETG00000022190) #14 mmp20 (ENSXETG00000034187) #16 mmp8 (ENSXETG00000036861) ENSXETG00000031108 ENSXETG00000040632 mmp1 (ENSXETG00000022198) #19 mmp13l (ENSXETG00000022215) ENSXETG00000037836 dcun1d5 (ENSXETG00000022216) #21 dync2h1 (ENSXETG00000032809) #22 pdgfd (ENSXETG00000010500) #24 gria4 (ENSXETG00000021373) #29 msantd4 (ENSXETG00000021381) #30 kbtbd3 (ENSXETG00000021386) #31 aasdhppt (ENSXETG00000032901) #32 gucy1a2 (ENSXETG00000018493) cwf19l2 (ENSXETG00000018483) ENSXETG00000035543 alkbh8 (ENSXETG00000014487) elmod1 (ENSXETG00000038960) ENSXETG00000038149 ENSXETG00000044987 slc35f2 (ENSXETG00000014482) cul5 (ENSXETG00000034081) npat (ENSXETG00000014476) Leishan spiny toad MODERN SPECIES 5 ENSLLEG00000004250 FDX1 (ENSLLEG00000004257) ENSLLEG00000004261 ENSLLEG00000012140 ARRB1 (ENSLLEG00000012277) ENSLLEG00000014020 ENSLLEG00000014047 ENSLLEG00000014070 ENSLLEG00000014087 ENSLLEG00000014114 ENSLLEG00000014144 ENSLLEG00000014166 ENSLLEG00000014228 ENSLLEG00000014273 ENSLLEG00000014365 DYNC2H1 (ENSLLEG00000014586) #22 ENSLLEG00000017270 ENSLLEG00000017288 ENSLLEG00000017320 PDGFD (ENSLLEG00000017360) #24 ENSLLEG00000017651 ENSLLEG00000017686 ENSLLEG00000017705 ENSLLEG00000017775 GRIA4 (ENSLLEG00000017858) #29 ENSLLEG00000018327 MSANTD4 (ENSLLEG00000018350) #30 ENSLLEG00000018439 KBTBD3 (ENSLLEG00000018490) #31 AASDHPPT (ENSLLEG00000018533) #32 ENSLLEG00000018672 Coelacanth DUPLICATION Coelacanth MODERN SPECIES 684 ENSLACG00000015396 #14 ENSLACG00000015001 #14 ENSLACG00000014804 ##19 MMP20 (ENSLACG00000014582) #16 ENSLACG00000014097 ##19 ENSLACG00000013597 ##19 ENSLACG00000013502 ##19 MMP13 (ENSLACG00000013031) DCUN1D5 (ENSLACG00000011146) #21 ENSLACG00000009671 #22 ENSLACG00000000931 #22 Coelacanth MODERN SPECIES 684 ENSLACG00000015396 #14 ENSLACG00000015001 #14 ENSLACG00000014804 ##19 MMP20 (ENSLACG00000014582) #16 ENSLACG00000014097 ##19 ENSLACG00000013597 ##19 ENSLACG00000013502 ##19 MMP13 (ENSLACG00000013031) DCUN1D5 (ENSLACG00000011146) #21 ENSLACG00000009671 #22 ENSLACG00000000931 #22