Sarcopterygii	ANCESTRAL SPECIES	3	ENSGT00940000155294	ENSGT00940000157988	ENSGT00940000156172.b	ENSGT00390000002061	ENSGT00940000164970	ENSGT00940000164547	ENSGT00940000154634.c	ENSGT00950000182808.b.a	ENSGT00730000111180	ENSGT00940000159257	ENSGT00390000005651	ENSGT00940000156907	ENSGT00940000164239	ENSGT00940000163578	ENSGT00940000157414	ENSGT00940000156252 #22	ENSGT00940000157353	ENSGT00390000015564	ENSGT00940000160385	ENSGT00940000160659
Tetrapoda	ANCESTRAL SPECIES	1	ENSGT00390000001057	ENSGT00940000155294	ENSGT00940000157988	ENSGT00940000156172.b	ENSGT00390000002061	ENSGT00940000164970	ENSGT00940000154634.c	ENSGT00950000182808.b.a	ENSGT00730000111180	ENSGT00940000159257	ENSGT00390000005651	ENSGT00940000156907	ENSGT00940000164239	ENSGT00940000163578	ENSGT00940000157414	ENSGT00940000156252 #22	ENSGT00940000157353	ENSGT00390000015564	ENSGT00940000160659	ENSGT00940000161270	ENSGT00940000159435	ENSGT00940000160385	ENSGT00390000002200.a.b ##34	ENSGT00940000154635.a	ENSGT00950000182992.a.b.b	ENSGT00940000154968	ENSGT00940000154824.a	ENSGT00390000001688	ENSGT00940000157532	ENSGT00940000156113	ENSGT00940000164654
Amniota	ANCESTRAL SPECIES	143														ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25
Mammalia	ANCESTRAL SPECIES	13	ENSGT00940000160687	ENSGT00940000165234	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000163363	ENSGT00940000153717.b #36
Theria	ANCESTRAL SPECIES	17	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000163363	ENSGT00940000153717.b #36
Eutheria	ANCESTRAL SPECIES	19	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000153793 #12	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000153793 #12	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Primates	ANCESTRAL SPECIES	21	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Haplorrhini	ANCESTRAL SPECIES	21	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Simiiformes	ANCESTRAL SPECIES	21	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Catarrhini	ANCESTRAL SPECIES	11	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00910000146698	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Cercopithecidae	ANCESTRAL SPECIES	8	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.e.a ##12	ENSGT00910000146698	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Rhinopithecus	ANCESTRAL SPECIES	25	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.e.a ##12	ENSGT00940000153793.e.b ##12	ENSGT00940000153793.f #12	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Black snub-nosed monkey	MODERN SPECIES	1559						CES2 (ENSRBIG00000028932) #12	CBFB (ENSRBIG00000028183) #13	PHAF1 (ENSRBIG00000031729) #14	B3GNT9 (ENSRBIG00000041288) #15	TRADD (ENSRBIG00000033518) #16	HSF4 (ENSRBIG00000015925) #17	ENSRBIG00000038421 #18	ENSRBIG00000034061 #19	MATCAP1 (ENSRBIG00000036651) #20	EXOC3L1 (ENSRBIG00000031904) #21	E2F4 (ENSRBIG00000040599) #22	ELMO3 (ENSRBIG00000033071) #23	ENSRBIG00000023382 #24	TMEM208 (ENSRBIG00000036462) #25	FHOD1 (ENSRBIG00000028944) #26	SLC9A5 (ENSRBIG00000028965) #27	PLEKHG4 (ENSRBIG00000027622) #28	KCTD19 (ENSRBIG00000039801) #29	LRRC36 (ENSRBIG00000036501) #30	TPPP3 (ENSRBIG00000037427) #31	ZDHHC1 (ENSRBIG00000030016) #32	HSD11B2 (ENSRBIG00000033356) #33	ATP6V0D1 (ENSRBIG00000034525) #34	AGRP (ENSRBIG00000044991) #35	RIPOR1 (ENSRBIG00000032040) #36	CTCF (ENSRBIG00000034739) #37
Golden snub-nosed monkey	MODERN SPECIES	2988	CA7 (ENSRROG00000040146)	PDP2 (ENSRROG00000008872)	CDH16 (ENSRROG00000044530)	RRAD (ENSRROG00000038070)	CIAO2B (ENSRROG00000044649)	ENSRROG00000043998 ##12	ENSRROG00000035237 ##12	CBFB (ENSRROG00000031552) #13	ENSRROG00000031108 #14	TRADD (ENSRROG00000001491) #16	FBXL8 (ENSRROG00000034560)	HSF4 (ENSRROG00000042484) #17	ENSRROG00000033912 #18	MATCAP1 (ENSRROG00000012831) #20	EXOC3L1 (ENSRROG00000040665) #21	E2F4 (ENSRROG00000035670) #22	ELMO3 (ENSRROG00000044911) #23	ENSRROG00000031712 #24	TMEM208 (ENSRROG00000032781) #25	FHOD1 (ENSRROG00000033735) #26	SLC9A5 (ENSRROG00000045120) #27	PLEKHG4 (ENSRROG00000045715) #28	KCTD19 (ENSRROG00000033022) #29	LRRC36 (ENSRROG00000033554) #30	TPPP3 (ENSRROG00000036135) #31	ZDHHC1 (ENSRROG00000040272) #32	HSD11B2 (ENSRROG00000028099) #33	ATP6V0D1 (ENSRROG00000009060) #34	AGRP (ENSRROG00000043812) #35	RIPOR1 (ENSRROG00000031142) #36	CTCF (ENSRROG00000038473) #37
Cercopithecinae	ANCESTRAL SPECIES	10	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.e.a ##12	ENSGT00910000146698	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Vervet Monkey	MODERN SPECIES	24	CFDP1 (ENSCSAG00000003687)	BCAR1 (ENSCSAG00000003690)	ENSCSAG00000003696	ENSCSAG00000003711	ZFP1 (ENSCSAG00000003718)	LDHD (ENSCSAG00000003721)	CBFB (ENSCSAG00000003725) #13	B3GNT9 (ENSCSAG00000018474) #15	PHAF1 (ENSCSAG00000003732) #14	TRADD (ENSCSAG00000003737) #16	FBXL8 (ENSCSAG00000003742)	HSF4 (ENSCSAG00000003768) #17	ENSCSAG00000003782 #18	MATCAP1 (ENSCSAG00000003789) #20	EXOC3L1 (ENSCSAG00000003798) #21	E2F4 (ENSCSAG00000003814) #22	ELMO3 (ENSCSAG00000003824) #23	ENSCSAG00000003830 #24	ENSCSAG00000003834 #24	TMEM208 (ENSCSAG00000003843) #25	FHOD1 (ENSCSAG00000003848) #26	SLC9A5 (ENSCSAG00000003857) #27	PLEKHG4 (ENSCSAG00000003865) #28	KCTD19 (ENSCSAG00000003872) #29	LRRC36 (ENSCSAG00000003884) #30	TPPP3 (ENSCSAG00000003890) #31	ZDHHC1 (ENSCSAG00000003895) #32	HSD11B2 (ENSCSAG00000003897) #33	ATP6V0D1 (ENSCSAG00000003900) #34	AGRP (ENSCSAG00000003901) #35	RIPOR1 (ENSCSAG00000003905) #36
Cercopithecinae_a	ANCESTRAL SPECIES	10	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.e.a ##12	ENSGT00910000146698	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Cercopithecinae_b	ANCESTRAL SPECIES	5	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.e.a ##12	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Olive baboon	MODERN SPECIES	9	NAE1 (ENSPANG00000017004)	CA7 (ENSPANG00000019306)	PDP2 (ENSPANG00000008640)	CDH16 (ENSPANG00000015586)	RRAD (ENSPANG00000042893)	CIAO2B (ENSPANG00000013428)	CBFB (ENSPANG00000008068) #13	PHAF1 (ENSPANG00000018550) #14	B3GNT9 (ENSPANG00000011657) #15	TRADD (ENSPANG00000017334) #16	FBXL8 (ENSPANG00000013427)	HSF4 (ENSPANG00000005017) #17	NOL3 (ENSPANG00000030797) #18	MATCAP1 (ENSPANG00000035304) #20	EXOC3L1 (ENSPANG00000000502) #21	E2F4 (ENSPANG00000016794) #22	ELMO3 (ENSPANG00000005501) #23	ENSPANG00000031561 #24	TMEM208 (ENSPANG00000029479) #25	FHOD1 (ENSPANG00000000605) #26	SLC9A5 (ENSPANG00000016265) #27	PLEKHG4 (ENSPANG00000026235) #28	KCTD19 (ENSPANG00000034300) #29	LRRC36 (ENSPANG00000021733) #30	TPPP3 (ENSPANG00000018345) #31	ZDHHC1 (ENSPANG00000008638) #32	HSD11B2 (ENSPANG00000047862) #33	ATP6V0D1 (ENSPANG00000017898) #34	AGRP (ENSPANG00000024565) #35	RIPOR1 (ENSPANG00000008637) #36	CTCF (ENSPANG00000015703) #37
Cercopithecinae_d	ANCESTRAL SPECIES	4	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.e.a ##12	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Drill	MODERN SPECIES	1217							ENSMLEG00000037764 #13	PHAF1 (ENSMLEG00000029921) #14	B3GNT9 (ENSMLEG00000002033) #15	TRADD (ENSMLEG00000034770) #16	FBXL8 (ENSMLEG00000035933)	HSF4 (ENSMLEG00000032540) #17	ENSMLEG00000041719 #18	MATCAP1 (ENSMLEG00000036488) #20	EXOC3L1 (ENSMLEG00000027466) #21	E2F4 (ENSMLEG00000036642) #22	ELMO3 (ENSMLEG00000034728) #23	ENSMLEG00000040113 #24	TMEM208 (ENSMLEG00000012936) #25	FHOD1 (ENSMLEG00000043304) #26	SLC9A5 (ENSMLEG00000033811) #27	PLEKHG4 (ENSMLEG00000041775) #28	KCTD19 (ENSMLEG00000041644) #29	LRRC36 (ENSMLEG00000040310) #30	TPPP3 (ENSMLEG00000009666) #31	ZDHHC1 (ENSMLEG00000027489) #32	HSD11B2 (ENSMLEG00000031297) #33	ENSMLEG00000041928	ATP6V0D1 (ENSMLEG00000043793) #34	AGRP (ENSMLEG00000035909) #35	RIPOR1 (ENSMLEG00000035065) #36
Sooty mangabey	MODERN SPECIES	96	PDP2 (ENSCATG00000002549)	CDH16 (ENSCATG00000036211)	RRAD (ENSCATG00000034562)	CIAO2B (ENSCATG00000032819)	CES2 (ENSCATG00000029478) ##12	ENSCATG00000027954	CBFB (ENSCATG00000042676) #13	PHAF1 (ENSCATG00000033027) #14	B3GNT9 (ENSCATG00000000540) #15	TRADD (ENSCATG00000030076) #16	FBXL8 (ENSCATG00000038633)	HSF4 (ENSCATG00000042580) #17	ENSCATG00000034821 #18	MATCAP1 (ENSCATG00000037134) #20	EXOC3L1 (ENSCATG00000041980) #21	E2F4 (ENSCATG00000042556) #22	ELMO3 (ENSCATG00000034679) #23	ENSCATG00000033840 #24	TMEM208 (ENSCATG00000039336) #25	FHOD1 (ENSCATG00000036299) #26	SLC9A5 (ENSCATG00000038552) #27	PLEKHG4 (ENSCATG00000044215) #28	KCTD19 (ENSCATG00000037148) #29	LRRC36 (ENSCATG00000035252) #30	TPPP3 (ENSCATG00000019059) #31	ZDHHC1 (ENSCATG00000029639) #32	HSD11B2 (ENSCATG00000037152) #33	ATP6V0D1 (ENSCATG00000033064) #34	AGRP (ENSCATG00000042230) #35	RIPOR1 (ENSCATG00000038948) #36	CTCF (ENSCATG00000042738) #37
Macaca	ANCESTRAL SPECIES	8	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.e.a ##12	ENSGT00910000146698	ENSGT00940000155200	ENSGT00390000018132.f #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Pig-tailed macaque	MODERN SPECIES	178	RRAD (ENSMNEG00000041942)	CIAO2B (ENSMNEG00000034933)	CES2 (ENSMNEG00000032898) ##12	ENSMNEG00000033775	ENSMNEG00000031450	ENSMNEG00000037132	CBFB (ENSMNEG00000028964) #13	PHAF1 (ENSMNEG00000033604) #14	B3GNT9 (ENSMNEG00000006041) #15	TRADD (ENSMNEG00000018376) #16	FBXL8 (ENSMNEG00000016307)	HSF4 (ENSMNEG00000038020) #17	ENSMNEG00000030684 #18	MATCAP1 (ENSMNEG00000040545) #20	EXOC3L1 (ENSMNEG00000030051) #21	E2F4 (ENSMNEG00000025909) #22	ELMO3 (ENSMNEG00000037172) #23	ENSMNEG00000037287 #24	TMEM208 (ENSMNEG00000000037) #25	FHOD1 (ENSMNEG00000040309) #26	SLC9A5 (ENSMNEG00000041562) #27	PLEKHG4 (ENSMNEG00000030662) #28	KCTD19 (ENSMNEG00000041509) #29	LRRC36 (ENSMNEG00000038276) #30	TPPP3 (ENSMNEG00000029652) #31	ZDHHC1 (ENSMNEG00000040984) #32	HSD11B2 (ENSMNEG00000032697) #33	ATP6V0D1 (ENSMNEG00000030202) #34	AGRP (ENSMNEG00000028917) #35	RIPOR1 (ENSMNEG00000031800) #36	CTCF (ENSMNEG00000036416) #37
Macaca_a	ANCESTRAL SPECIES	14	ENSGT00940000159757	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.e.a ##12	ENSGT00390000018132.f #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Rhesus	MODERN SPECIES	12	CDH16 (ENSMMUG00000016727)	RRAD (ENSMMUG00000049583)	CIAO2B (ENSMMUG00000010919)	CES2 (ENSMMUG00000022825) ##12	ENSMMUG00000064237	ENSMMUG00000054948 #13	CBFB (ENSMMUG00000058815) #13	PHAF1 (ENSMMUG00000018102) #14	B3GNT9 (ENSMMUG00000007559) #15	TRADD (ENSMMUG00000060314) #16	FBXL8 (ENSMMUG00000050693)	HSF4 (ENSMMUG00000005906) #17	NOL3 (ENSMMUG00000020268) #18	MATCAP1 (ENSMMUG00000020266) #20	EXOC3L1 (ENSMMUG00000020254) #21	E2F4 (ENSMMUG00000020258) #22	ELMO3 (ENSMMUG00000020259) #23	LRRC29 (ENSMMUG00000020260) #24	TMEM208 (ENSMMUG00000020263) #25	FHOD1 (ENSMMUG00000018111) #26	SLC9A5 (ENSMMUG00000059990) #27	KCTD19 (ENSMMUG00000004971) #29	LRRC36 (ENSMMUG00000009821) #30	TPPP3 (ENSMMUG00000054637) #31	ZDHHC1 (ENSMMUG00000009825) #32	HSD11B2 (ENSMMUG00000008034) #33	ATP6V0D1 (ENSMMUG00000029105) #34	AGRP (ENSMMUG00000060341) #35	RIPOR1 (ENSMMUG00000017105) #36	CTCF (ENSMMUG00000009798) #37	CARMIL2 (ENSMMUG00000009799)
Hominoidea	ANCESTRAL SPECIES	9	ENSGT00390000017697.b	ENSGT00940000153793.d #12	ENSGT00910000146698	ENSGT00940000153793.c #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Hominidae	ANCESTRAL SPECIES	9	ENSGT00940000153793.d #12	ENSGT00910000146698	ENSGT00940000155200.p	ENSGT00940000153793.c #12	ENSGT00940000155200.o	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	19	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.d #12	ENSGT00940000155200.o	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Homo/Pan group	ANCESTRAL SPECIES	19	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.d #12	ENSGT00940000155200.o.a	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Pan	ANCESTRAL SPECIES	19	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.d #12	ENSGT00940000153793.c #12	ENSGT00940000155200.o.a	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00910000147085	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	7	CA7 (ENSPPAG00000033884)	PDP2 (ENSPPAG00000001912)	CDH16 (ENSPPAG00000043698)	ENSPPAG00000032214	CIAO2B (ENSPPAG00000024574)	ENSPPAG00000039720 #12	ENSPPAG00000035018 #13	PHAF1 (ENSPPAG00000038365) #14	B3GNT9 (ENSPPAG00000001847) #15	TRADD (ENSPPAG00000035660) #16	FBXL8 (ENSPPAG00000033828)	HSF4 (ENSPPAG00000036811) #17	NOL3 (ENSPPAG00000040533) #18	MATCAP1 (ENSPPAG00000003682) #20	EXOC3L1 (ENSPPAG00000027466) #21	ENSPPAG00000009557 #22	ELMO3 (ENSPPAG00000030509) #23	ENSPPAG00000040320 #24	TMEM208 (ENSPPAG00000027348) #25	FHOD1 (ENSPPAG00000036018) #26	SLC9A5 (ENSPPAG00000040056) #27	PLEKHG4 (ENSPPAG00000043758) #28	KCTD19 (ENSPPAG00000039548) #29	LRRC36 (ENSPPAG00000032136) #30	TPPP3 (ENSPPAG00000039712) #31	ENSPPAG00000030585 #32	HSD11B2 (ENSPPAG00000035249) #33	ENSPPAG00000031006	ATP6V0D1 (ENSPPAG00000039877) #34	AGRP (ENSPPAG00000040052) #35	RIPOR1 (ENSPPAG00000029650) #36
Bonobo	MODERN SPECIES	2	OR10A3 (ENSPPAG00000022802)	OR10A6 (ENSPPAG00000011852)	ENSPPAG00000038922	OR5P3 (ENSPPAG00000025230)	OR5P2 (ENSPPAG00000039252)	OVCH2 (ENSPPAG00000030544)	CYB5R2 (ENSPPAG00000043427)	PPFIBP2 (ENSPPAG00000040703)	OLFML1 (ENSPPAG00000037899)	SYT9 (ENSPPAG00000041481)	NLRP14 (ENSPPAG00000039939)	ZNF214 (ENSPPAG00000038017)	ZNF215 (ENSPPAG00000035352)	OR2D3 (ENSPPAG00000006922)	OR10A2 (ENSPPAG00000020673)	ENSPPAG00000008986 #22	OR10A5 (ENSPPAG00000013772)	OR6A2 (ENSPPAG00000009041)	OR2AG1 (ENSPPAG00000007655)	OR2AG2 (ENSPPAG00000005020)	ENSPPAG00000026745	MRPL17 (ENSPPAG00000038749)	DCHS1 (ENSPPAG00000038073)	TPP1 (ENSPPAG00000035179)	ENSPPAG00000036624	ILK (ENSPPAG00000029774)	RRP8 (ENSPPAG00000040792)	DNHD1 (ENSPPAG00000036498)	TIMM10B (ENSPPAG00000040105)	ARFIP2 (ENSPPAG00000042484)	TRIM3 (ENSPPAG00000036529)
Chimpanzee	MODERN SPECIES	7	CDH16 (ENSPTRG00000008205)	RRAD (ENSPTRG00000008207)	CIAO2B (ENSPTRG00000008208)	CES2 (ENSPTRG00000051277) #12	ENSPTRG00000008209 #12	CES3 (ENSPTRG00000008210)	CBFB (ENSPTRG00000042433) #13	PHAF1 (ENSPTRG00000008214) #14	B3GNT9 (ENSPTRG00000047547) #15	TRADD (ENSPTRG00000008215) #16	FBXL8 (ENSPTRG00000008216)	HSF4 (ENSPTRG00000034007) #17	NOL3 (ENSPTRG00000049746) #18	MATCAP1 (ENSPTRG00000031185) #20	EXOC3L1 (ENSPTRG00000008218) #21	E2F4 (ENSPTRG00000031180) #22	ELMO3 (ENSPTRG00000008220) #23	LRRC29 (ENSPTRG00000008221) #24	TMEM208 (ENSPTRG00000008222) #25	FHOD1 (ENSPTRG00000008223) #26	SLC9A5 (ENSPTRG00000008224) #27	PLEKHG4 (ENSPTRG00000008225) #28	KCTD19 (ENSPTRG00000008226) #29	LRRC36 (ENSPTRG00000008227) #30	TPPP3 (ENSPTRG00000050239) #31	ZDHHC1 (ENSPTRG00000008229) #32	HSD11B2 (ENSPTRG00000008230) #33	ENSPTRG00000049931	ATP6V0D1 (ENSPTRG00000008231) #34	AGRP (ENSPTRG00000008232) #35	RIPOR1 (ENSPTRG00000008233) #36
Human	MODERN SPECIES	7	CDH16 (ENSG00000166589)	RRAD (ENSG00000166592)	CIAO2B (ENSG00000166595)	CES2 (ENSG00000172831) #12	CES3 (ENSG00000172828)	CES4A (ENSG00000172824)	CBFB (ENSG00000067955) #13	PHAF1 (ENSG00000125149) #14	B3GNT9 (ENSG00000237172) #15	TRADD (ENSG00000102871) #16	FBXL8 (ENSG00000135722)	HSF4 (ENSG00000102878) #17	NOL3 (ENSG00000140939) #18	MATCAP1 (ENSG00000196123) #20	EXOC3L1 (ENSG00000179044) #21	E2F4 (ENSG00000205250) #22	ELMO3 (ENSG00000102890) #23	TMEM208 (ENSG00000168701) #25	FHOD1 (ENSG00000135723) #26	SLC9A5 (ENSG00000135740) #27	PLEKHG4 (ENSG00000196155) #28	KCTD19 (ENSG00000168676) #29	LRRC36 (ENSG00000159708) #30	TPPP3 (ENSG00000159713) #31	ZDHHC1 (ENSG00000159714) #32	HSD11B2 (ENSG00000176387) #33	ATP6V0D1 (ENSG00000159720) #34	AGRP (ENSG00000159723) #35	RIPOR1 (ENSG00000039523) #36	CTCF (ENSG00000102974) #37	CARMIL2 (ENSG00000159753)
Gorilla	MODERN SPECIES	7	CES2 (ENSGGOG00000008251) #12	ENSGGOG00000043424	ENSGGOG00000043733	ENSGGOG00000040837	CES3 (ENSGGOG00000008262)	ENSGGOG00000008270	CBFB (ENSGGOG00000043175) #13	PHAF1 (ENSGGOG00000011866) #14	B3GNT9 (ENSGGOG00000040003) #15	ENSGGOG00000011883 #16	FBXL8 (ENSGGOG00000011893)	HSF4 (ENSGGOG00000011899) #17	NOL3 (ENSGGOG00000012278) #18	MATCAP1 (ENSGGOG00000023625) #20	EXOC3L1 (ENSGGOG00000011912) #21	E2F4 (ENSGGOG00000011924) #22	ELMO3 (ENSGGOG00000011935) #23	ENSGGOG00000011956 #24	TMEM208 (ENSGGOG00000001482) #25	FHOD1 (ENSGGOG00000010001) #26	SLC9A5 (ENSGGOG00000010016) #27	PLEKHG4 (ENSGGOG00000015950) #28	KCTD19 (ENSGGOG00000015964) #29	LRRC36 (ENSGGOG00000008469) #30	TPPP3 (ENSGGOG00000008477) #31	ENSGGOG00000008484 #32	HSD11B2 (ENSGGOG00000012970) #33	ENSGGOG00000043327	ATP6V0D1 (ENSGGOG00000012974) #34	AGRP (ENSGGOG00000012981) #35	RIPOR1 (ENSGGOG00000011949) #36
Orangutan	MODERN SPECIES	7	RRAD (ENSPPYG00000007432)	CIAO2B (ENSPPYG00000041569)	ENSPPYG00000007434 #12	CES3 (ENSPPYG00000041300)	ENSPPYG00000007435	CES4A (ENSPPYG00000007436)	CBFB (ENSPPYG00000007437) #13	PHAF1 (ENSPPYG00000007438) #14	B3GNT9 (ENSPPYG00000007439) #15	TRADD (ENSPPYG00000007440) #16	FBXL8 (ENSPPYG00000041495)	HSF4 (ENSPPYG00000007441) #17	ENSPPYG00000007442 #18	MATCAP1 (ENSPPYG00000007443) #20	EXOC3L1 (ENSPPYG00000007444) #21	E2F4 (ENSPPYG00000007445) #22	ELMO3 (ENSPPYG00000007446) #23	ENSPPYG00000007447 #24	TMEM208 (ENSPPYG00000033761) #25	SLC9A5 (ENSPPYG00000007450) #27	PLEKHG4 (ENSPPYG00000007451) #28	KCTD19 (ENSPPYG00000007453) #29	LRRC36 (ENSPPYG00000007454) #30	TPPP3 (ENSPPYG00000039268) #31	ENSPPYG00000007456 #32	HSD11B2 (ENSPPYG00000034934) #33	ENSPPYG00000040595	ATP6V0D1 (ENSPPYG00000007458) #34	AGRP (ENSPPYG00000007459) #35	CTCF (ENSPPYG00000007461) #37	CARMIL2 (ENSPPYG00000007462)
Gibbon	MODERN SPECIES	11	CA7 (ENSNLEG00000030802)	CDH16 (ENSNLEG00000004109)	RRAD (ENSNLEG00000004167)	CIAO2B (ENSNLEG00000004172)	ENSNLEG00000004181 #12	CES2 (ENSNLEG00000030391) #12	CES3 (ENSNLEG00000004206)	ENSNLEG00000004228	CBFB (ENSNLEG00000004277) #13	PHAF1 (ENSNLEG00000004306) #14	TRADD (ENSNLEG00000004328) #16	FBXL8 (ENSNLEG00000004335)	HSF4 (ENSNLEG00000004338) #17	MATCAP1 (ENSNLEG00000004356) #20	EXOC3L1 (ENSNLEG00000004364) #21	E2F4 (ENSNLEG00000004342) #22	ELMO3 (ENSNLEG00000004393) #23	ENSNLEG00000004435 #24	ENSNLEG00000031742 #25	ENSNLEG00000031407 #26	ENSNLEG00000004480 #27	PLEKHG4 (ENSNLEG00000004488) #28	KCTD19 (ENSNLEG00000004620) #29	ENSNLEG00000035657 #30	TPPP3 (ENSNLEG00000004642) #31	ENSNLEG00000004659 #32	ENSNLEG00000004665	HSD11B2 (ENSNLEG00000004600) #33	ATP6V0D1 (ENSNLEG00000004667) #34	AGRP (ENSNLEG00000004727) #35	RIPOR1 (ENSNLEG00000004731) #36
Platyrrhini	ANCESTRAL SPECIES	21	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Cebidae	ANCESTRAL SPECIES	21	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Cebidae_a	ANCESTRAL SPECIES	37	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Bolivian squirrel monkey	MODERN SPECIES	125	PDP2 (ENSSBOG00000018774)	CDH16 (ENSSBOG00000000059)	RRAD (ENSSBOG00000026924)	ENSSBOG00000034849	CES2 (ENSSBOG00000023519) #12	CES3 (ENSSBOG00000034389)	CES4A (ENSSBOG00000026647)	CBFB (ENSSBOG00000033643) #13	PHAF1 (ENSSBOG00000029225) #14	TRADD (ENSSBOG00000030892) #16	FBXL8 (ENSSBOG00000027852)	HSF4 (ENSSBOG00000032426) #17	ENSSBOG00000034224 #18	MATCAP1 (ENSSBOG00000022034) #20	EXOC3L1 (ENSSBOG00000021491) #21	E2F4 (ENSSBOG00000028854) #22	ELMO3 (ENSSBOG00000020441) #23	ENSSBOG00000017407 #24	TMEM208 (ENSSBOG00000029141) #25	FHOD1 (ENSSBOG00000029348) #26	SLC9A5 (ENSSBOG00000033771) #27	PLEKHG4 (ENSSBOG00000019498) #28	KCTD19 (ENSSBOG00000035579) #29	LRRC36 (ENSSBOG00000018750) #30	TPPP3 (ENSSBOG00000027473) #31	ZDHHC1 (ENSSBOG00000024750) #32	HSD11B2 (ENSSBOG00000020734) #33	ATP6V0D1 (ENSSBOG00000023987) #34	AGRP (ENSSBOG00000028971) #35	RIPOR1 (ENSSBOG00000019007) #36	CTCF (ENSSBOG00000030958) #37
Capuchin	MODERN SPECIES	118	PDP2 (ENSCCAG00000008632)	CDH16 (ENSCCAG00000028654)	RRAD (ENSCCAG00000035598)	CIAO2B (ENSCCAG00000037204)	CES2 (ENSCCAG00000037058) #12	CES4A (ENSCCAG00000035376)	CES3 (ENSCCAG00000019551)	CBFB (ENSCCAG00000036199) #13	ENSCCAG00000008806 #14	TRADD (ENSCCAG00000025054) #16	FBXL8 (ENSCCAG00000032746)	HSF4 (ENSCCAG00000018787) #17	NOL3 (ENSCCAG00000024743) #18	KIAA0895L (ENSCCAG00000028132) #20	EXOC3L1 (ENSCCAG00000030759) #21	E2F4 (ENSCCAG00000003067) #22	ELMO3 (ENSCCAG00000027018) #23	ENSCCAG00000022766 #24	TMEM208 (ENSCCAG00000033775) #25	FHOD1 (ENSCCAG00000033277) #26	SLC9A5 (ENSCCAG00000023939) #27	PLEKHG4 (ENSCCAG00000026268) #28	KCTD19 (ENSCCAG00000037027) #29	LRRC36 (ENSCCAG00000032482) #30	TPPP3 (ENSCCAG00000026155) #31	ZDHHC1 (ENSCCAG00000024396) #32	HSD11B2 (ENSCCAG00000032222) #33	ATP6V0D1 (ENSCCAG00000033213) #34	AGRP (ENSCCAG00000026443) #35	ENSCCAG00000024362	RIPOR1 (ENSCCAG00000029187) #36
Marmoset	MODERN SPECIES	12	CDH16 (ENSCJAG00000016616)	RRAD (ENSCJAG00000016611)	CIAO2B (ENSCJAG00000016595)	CES2 (ENSCJAG00000038169) #12	CES3 (ENSCJAG00000016564)	CES4A (ENSCJAG00000016544)	CBFB (ENSCJAG00000046152) #13	PHAF1 (ENSCJAG00000016510) #14	B3GNT9 (ENSCJAG00000041278) #15	TRADD (ENSCJAG00000016502) #16	FBXL8 (ENSCJAG00000016495)	HSF4 (ENSCJAG00000016481) #17	ENSCJAG00000016465 #18	MATCAP1 (ENSCJAG00000039578) #20	EXOC3L1 (ENSCJAG00000016422) #21	E2F4 (ENSCJAG00000016403) #22	ELMO3 (ENSCJAG00000016361) #23	ENSCJAG00000016352 #24	TMEM208 (ENSCJAG00000016332) #25	SLC9A5 (ENSCJAG00000016263) #27	PLEKHG4 (ENSCJAG00000016239) #28	KCTD19 (ENSCJAG00000016220) #29	LRRC36 (ENSCJAG00000016213) #30	TPPP3 (ENSCJAG00000042043) #31	ZDHHC1 (ENSCJAG00000016204) #32	HSD11B2 (ENSCJAG00000016198) #33	ATP6V0D1 (ENSCJAG00000016190) #34	AGRP (ENSCJAG00000016184) #35	RIPOR1 (ENSCJAG00000016148) #36	CTCF (ENSCJAG00000016139) #37	CARMIL2 (ENSCJAG00000016125)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1135	PDP2 (ENSANAG00000019612)	CDH16 (ENSANAG00000030845)	RRAD (ENSANAG00000030145)	CIAO2B (ENSANAG00000037535)	CES2 (ENSANAG00000038137) #12	CES3 (ENSANAG00000022725)	CES4A (ENSANAG00000037870)	CBFB (ENSANAG00000019257) #13	PHAF1 (ENSANAG00000037262) #14	TRADD (ENSANAG00000038062) #16	FBXL8 (ENSANAG00000005327)	HSF4 (ENSANAG00000023015) #17	ENSANAG00000028129 #18	MATCAP1 (ENSANAG00000028721) #20	EXOC3L1 (ENSANAG00000035083) #21	ENSANAG00000032362 #22	ELMO3 (ENSANAG00000034358) #23	ENSANAG00000034545 #24	TMEM208 (ENSANAG00000020556) #25	FHOD1 (ENSANAG00000025694) #26	SLC9A5 (ENSANAG00000035387) #27	PLEKHG4 (ENSANAG00000036092) #28	KCTD19 (ENSANAG00000021622) #29	LRRC36 (ENSANAG00000038452) #30	TPPP3 (ENSANAG00000024244) #31	ZDHHC1 (ENSANAG00000028213) #32	HSD11B2 (ENSANAG00000031199) #33	ATP6V0D1 (ENSANAG00000024349) #34	AGRP (ENSANAG00000025594) #35	RIPOR1 (ENSANAG00000035037) #36	CTCF (ENSANAG00000027330) #37
Mas night monkey	MODERN SPECIES	1333	NFE2L2 (ENSANAG00000023669)	HNRNPA3 (ENSANAG00000002931)	MTX2 (ENSANAG00000022501)	ENSANAG00000031061	HOXD1 (ENSANAG00000019775)	HOXD3 (ENSANAG00000026428)	HOXD4 (ENSANAG00000028028)	HOXD8 (ENSANAG00000026980)	HOXD9 (ENSANAG00000024699)	HOXD10 (ENSANAG00000025381)	HOXD11 (ENSANAG00000029678)	HOXD12 (ENSANAG00000008919)	HOXD13 (ENSANAG00000029500)	EVX2 (ENSANAG00000031929)	LNPK (ENSANAG00000019161)	ENSANAG00000021797 #22	ENSANAG00000023367	ENSANAG00000033889	ENSANAG00000037338	ENSANAG00000011341
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	1381								ENSTSYG00000009039 #13	CUNH16orf70 (ENSTSYG00000005441) #14	TRADD (ENSTSYG00000035881) #16	FBXL8 (ENSTSYG00000035544)	HSF4 (ENSTSYG00000030908) #17	ENSTSYG00000027378 #18	KIAA0895L (ENSTSYG00000014556) #20	EXOC3L1 (ENSTSYG00000034147) #21	ENSTSYG00000007645 #22	ELMO3 (ENSTSYG00000028878) #23	ENSTSYG00000005501 #24	TMEM208 (ENSTSYG00000031480) #25	FHOD1 (ENSTSYG00000026352) #26	SLC9A5 (ENSTSYG00000013838) #27	PLEKHG4 (ENSTSYG00000001169) #28	KCTD19 (ENSTSYG00000005449) #29	LRRC36 (ENSTSYG00000005473) #30	TPPP3 (ENSTSYG00000028006) #31	ZDHHC1 (ENSTSYG00000035954) #32	HSD11B2 (ENSTSYG00000026090) #33	ATP6V0D1 (ENSTSYG00000025917) #34
Tarsier	MODERN SPECIES	3941															MGAT1 (ENSTSYG00000005566)	ENSTSYG00000030171 #22
Strepsirrhini	ANCESTRAL SPECIES	17	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000155200	ENSGT00940000153793 #12	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Lemuriformes	ANCESTRAL SPECIES	31	ENSGT00940000157187	ENSGT00940000156131.a.b	ENSGT00550000075019	ENSGT00740000117161	ENSGT00940000153793 #12	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Lemuriformes_a	ANCESTRAL SPECIES	29	ENSGT00940000157499	ENSGT00940000157187	ENSGT00940000156131.a.b	ENSGT00550000075019	ENSGT00940000161738	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Greater bamboo lemur	MODERN SPECIES	1053						ENSPSMG00000009323	CBFB (ENSPSMG00000009337) #13	PHAF1 (ENSPSMG00000009359) #14	B3GNT9 (ENSPSMG00000009364) #15	TRADD (ENSPSMG00000009370) #16	FBXL8 (ENSPSMG00000009377)	HSF4 (ENSPSMG00000009399) #17	ENSPSMG00000009414 #18	MATCAP1 (ENSPSMG00000009424) #20	EXOC3L1 (ENSPSMG00000009428) #21	E2F4 (ENSPSMG00000009487) #22	ELMO3 (ENSPSMG00000009500) #23	ENSPSMG00000009507 #24	ENSPSMG00000009512	TMEM208 (ENSPSMG00000009537) #25	ENSPSMG00000009572 #26	ENSPSMG00000009579 #26	SLC9A5 (ENSPSMG00000009595) #27	PLEKHG4 (ENSPSMG00000009668) #28	KCTD19 (ENSPSMG00000009687) #29	LRRC36 (ENSPSMG00000009720) #30	TPPP3 (ENSPSMG00000009738) #31	ZDHHC1 (ENSPSMG00000009762) #32	HSD11B2 (ENSPSMG00000009769) #33	ATP6V0D1 (ENSPSMG00000009814) #34	AGRP (ENSPSMG00000009841) #35
Coquerels sifaka	MODERN SPECIES	821	ENSPCOG00000019347	PLA2G15 (ENSPCOG00000027623)	ESRP2 (ENSPCOG00000022552)	NFATC3 (ENSPCOG00000005362)	DUS2 (ENSPCOG00000026045)	DDX28 (ENSPCOG00000024632)	CES4A (ENSPCOG00000023869)	CBFB (ENSPCOG00000024867) #13	PHAF1 (ENSPCOG00000015039) #14	TRADD (ENSPCOG00000020163) #16	FBXL8 (ENSPCOG00000026268)	HSF4 (ENSPCOG00000026876) #17	ENSPCOG00000006951 #18	MATCAP1 (ENSPCOG00000022553) #20	EXOC3L1 (ENSPCOG00000027783) #21	E2F4 (ENSPCOG00000020034) #22	ELMO3 (ENSPCOG00000026658) #23	ENSPCOG00000014126 #24	TMEM208 (ENSPCOG00000026225) #25	FHOD1 (ENSPCOG00000002886) #26	SLC9A5 (ENSPCOG00000028144) #27	PLEKHG4 (ENSPCOG00000018644) #28	KCTD19 (ENSPCOG00000016170) #29	ENSPCOG00000017976 #30	TPPP3 (ENSPCOG00000016301) #31	ZDHHC1 (ENSPCOG00000024962) #32	HSD11B2 (ENSPCOG00000025233) #33	ATP6V0D1 (ENSPCOG00000012981) #34	AGRP (ENSPCOG00000020567) #35	RIPOR1 (ENSPCOG00000023759) #36	CTCF (ENSPCOG00000026050) #37
Mouse lemur	MODERN SPECIES	12	NFATC3 (ENSMICG00000011371)	ENSMICG00000030045	DUS2 (ENSMICG00000011354)	DPEP2NB (ENSMICG00000033015)	CES2 (ENSMICG00000028404) #12	ENSMICG00000028840	CES4A (ENSMICG00000030422)	CBFB (ENSMICG00000028380) #13	PHAF1 (ENSMICG00000043907) #14	TRADD (ENSMICG00000007708) #16	FBXL8 (ENSMICG00000042011)	HSF4 (ENSMICG00000007714) #17	ENSMICG00000043710 #18	MATCAP1 (ENSMICG00000035308) #20	EXOC3L1 (ENSMICG00000007737) #21	E2F4 (ENSMICG00000007744) #22	ELMO3 (ENSMICG00000007753) #23	ENSMICG00000007763 #24	TMEM208 (ENSMICG00000007767) #25	FHOD1 (ENSMICG00000007774) #26	SLC9A5 (ENSMICG00000007789) #27	PLEKHG4 (ENSMICG00000007799) #28	KCTD19 (ENSMICG00000007810) #29	LRRC36 (ENSMICG00000012051) #30	TPPP3 (ENSMICG00000027878) #31	ZDHHC1 (ENSMICG00000012064) #32	HSD11B2 (ENSMICG00000034557) #33	ATP6V0D1 (ENSMICG00000012079) #34	AGRP (ENSMICG00000045134) #35	RIPOR1 (ENSMICG00000012105) #36	CTCF (ENSMICG00000012128) #37
Bushbaby	MODERN SPECIES	266	RRAD (ENSOGAG00000014676)	CIAO2B (ENSOGAG00000024476)	CES3 (ENSOGAG00000004516)	CES2 (ENSOGAG00000006597) #12	CES4A (ENSOGAG00000004518)	ENSOGAG00000000337	CBFB (ENSOGAG00000004521) #13	PHAF1 (ENSOGAG00000004524) #14	B3GNT9 (ENSOGAG00000024513) #15	TRADD (ENSOGAG00000034457) #16	FBXL8 (ENSOGAG00000030725)	HSF4 (ENSOGAG00000001391) #17	ENSOGAG00000033380 #18	MATCAP1 (ENSOGAG00000000008) #20	EXOC3L1 (ENSOGAG00000000009) #21	E2F4 (ENSOGAG00000000010) #22	ELMO3 (ENSOGAG00000000011) #23	ENSOGAG00000033153	ENSOGAG00000000012 #24	ENSOGAG00000000013	FHOD1 (ENSOGAG00000000014) #26	SLC9A5 (ENSOGAG00000000015) #27	PLEKHG4 (ENSOGAG00000000016) #28	KCTD19 (ENSOGAG00000000017) #29	LRRC36 (ENSOGAG00000000018) #30	TPPP3 (ENSOGAG00000000019) #31	ZDHHC1 (ENSOGAG00000000020) #32	HSD11B2 (ENSOGAG00000028718) #33	ATP6V0D1 (ENSOGAG00000000021) #34	AGRP (ENSOGAG00000034563) #35	RIPOR1 (ENSOGAG00000011861) #36
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Tree shrew	MODERN SPECIES	5263																ENSTBEG00000011108 #22	ELMO3 (ENSTBEG00000011307) #23	SLC9A5 (ENSTBEG00000011764) #27	PLEKHG4 (ENSTBEG00000012009) #28	KCTD19 (ENSTBEG00000012412) #29
Glires	ANCESTRAL SPECIES	6	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000164375	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Rodentia	ANCESTRAL SPECIES	8	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000164375	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00390000017697.b	ENSGT00940000153793.l #12	ENSGT00940000153793.k #12	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005025467 #12	ENSSVLG00005025347 #12	ENSSVLG00005025098	CES3 (ENSSVLG00005024805)	CES4A (ENSSVLG00005024667)	ENSSVLG00005024618	CBFB (ENSSVLG00005024570) #13	PHAF1 (ENSSVLG00005024553) #14	B3GNT9 (ENSSVLG00005024534) #15	TRADD (ENSSVLG00005024499) #16	FBXL8 (ENSSVLG00005024480)	HSF4 (ENSSVLG00005024450) #17	ENSSVLG00005024414 #18	MATCAP1 (ENSSVLG00005024362) #20	EXOC3L1 (ENSSVLG00005024301) #21	ENSSVLG00005024234 #22	ELMO3 (ENSSVLG00005024014) #23	ENSSVLG00005023967 #24	TMEM208 (ENSSVLG00005023939) #25	SLC9A5 (ENSSVLG00005023832) #27	PLEKHG4 (ENSSVLG00005023652) #28	KCTD19 (ENSSVLG00005023552) #29	LRRC36 (ENSSVLG00005023340) #30	TPPP3 (ENSSVLG00005023292) #31	ZDHHC1 (ENSSVLG00005023237) #32	HSD11B2 (ENSSVLG00005023211) #33	ATP6V0D1 (ENSSVLG00005023162) #34	AGRP (ENSSVLG00005023129) #35	RIPOR1 (ENSSVLG00005023066) #36	CTCF (ENSSVLG00005023014) #37	CARMIL2 (ENSSVLG00005022765)
Eurasian red squirrel	MODERN SPECIES	1	TM4SF1 (ENSSVLG00005014530)	TM4SF4 (ENSSVLG00005014565)	IL12A (ENSSVLG00005014635)	ENSSVLG00005014764	ENSSVLG00005015250	ENSSVLG00005015377	MFSD1 (ENSSVLG00005015449)	RARRES1 (ENSSVLG00005015785)	GFM1 (ENSSVLG00005015861)	LXN (ENSSVLG00005004800)	MLF1 (ENSSVLG00005004886)	RSRC1 (ENSSVLG00005005040)	SHOX2 (ENSSVLG00005005099)	VEPH1 (ENSSVLG00005005203)	PTX3 (ENSSVLG00005005353)	ENSSVLG00005005378 #22	CCNL1 (ENSSVLG00005005434)	LEKR1 (ENSSVLG00005005558)	TIPARP (ENSSVLG00005005579)	ENSSVLG00005005598	KCNAB1 (ENSSVLG00005005761)	ENSSVLG00005006157	GMPS (ENSSVLG00005006221)	SLC33A1 (ENSSVLG00005006332)	C3orf33 (ENSSVLG00005006407)	ENSSVLG00005006455	PLCH1 (ENSSVLG00005006514)	STRIT1 (ENSSVLG00005006829)	MME (ENSSVLG00005006865)	ENSSVLG00005006949	GPR149 (ENSSVLG00005006960)
Marmotini	ANCESTRAL SPECIES	17	ENSGT00940000153793.l #12	ENSGT00940000153793.k.a.a.b.a #12	ENSGT00940000153793.k.a.a.a.b #12	ENSGT00940000164375.a	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Marmotini_b	ANCESTRAL SPECIES	7	ENSGT00940000153793.k.a.a.a.a.a.a #12	ENSGT00940000153793.k.a.a.b.a #12	ENSGT00940000153793.k.a.a.a.b #12	ENSGT00940000164375.a	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Arctic ground squirrel	MODERN SPECIES	575				ENSUPAG00010002247	CES3 (ENSUPAG00010002231)	CES4A (ENSUPAG00010002214)	CBFB (ENSUPAG00010002159) #13	PHAF1 (ENSUPAG00010002137) #14	B3GNT9 (ENSUPAG00010002133) #15	TRADD (ENSUPAG00010002125) #16	FBXL8 (ENSUPAG00010002122)	HSF4 (ENSUPAG00010001926) #17	ENSUPAG00010001909 #18	MATCAP1 (ENSUPAG00010001869) #20	EXOC3L1 (ENSUPAG00010001853) #21	E2F4 (ENSUPAG00010001834) #22	ELMO3 (ENSUPAG00010001733) #23	ENSUPAG00010001706 #24	TMEM208 (ENSUPAG00010001695) #25	FHOD1 (ENSUPAG00010001636) #26	SLC9A5 (ENSUPAG00010001612) #27	PLEKHG4 (ENSUPAG00010001495) #28	KCTD19 (ENSUPAG00010001430) #29	LRRC36 (ENSUPAG00010001167) #30	TPPP3 (ENSUPAG00010001128) #31	ZDHHC1 (ENSUPAG00010001056) #32	HSD11B2 (ENSUPAG00010001038) #33	ATP6V0D1 (ENSUPAG00010001017) #34	AGRP (ENSUPAG00010001009) #35	RIPOR1 (ENSUPAG00010000952) #36	CTCF (ENSUPAG00010000926) #37
Squirrel	MODERN SPECIES	75	ENSSTOG00000022937 #12	ENSSTOG00000027386 #12	ENSSTOG00000026289 #12	ENSSTOG00000025164	CES3 (ENSSTOG00000012032)	CES4A (ENSSTOG00000011337)	CBFB (ENSSTOG00000011344) #13	PHAF1 (ENSSTOG00000011346) #14	B3GNT9 (ENSSTOG00000028759) #15	TRADD (ENSSTOG00000011360) #16	FBXL8 (ENSSTOG00000026518)	HSF4 (ENSSTOG00000027009) #17	ENSSTOG00000022251 #18	MATCAP1 (ENSSTOG00000016431) #20	EXOC3L1 (ENSSTOG00000016432) #21	E2F4 (ENSSTOG00000016434) #22	ELMO3 (ENSSTOG00000026655) #23	ENSSTOG00000022552 #24	TMEM208 (ENSSTOG00000016436) #25	FHOD1 (ENSSTOG00000020262) #26	SLC9A5 (ENSSTOG00000016438) #27	ENSSTOG00000030446	ENSSTOG00000016440 #28	KCTD19 (ENSSTOG00000016442) #29	LRRC36 (ENSSTOG00000016443) #30	TPPP3 (ENSSTOG00000020378) #31	ZDHHC1 (ENSSTOG00000016445) #32	HSD11B2 (ENSSTOG00000016446) #33	ATP6V0D1 (ENSSTOG00000016447) #34	AGRP (ENSSTOG00000016448) #35	RIPOR1 (ENSSTOG00000025539) #36
Alpin marmot	MODERN SPECIES	43		ENSMMMG00000001034 #12	ENSMMMG00000000825 #12	ENSMMMG00000000634	CES3 (ENSMMMG00000000606)	CES4A (ENSMMMG00000000581)	CBFB (ENSMMMG00000000573) #13	PHAF1 (ENSMMMG00000000540) #14	B3GNT9 (ENSMMMG00000000534) #15	TRADD (ENSMMMG00000000522) #16	FBXL8 (ENSMMMG00000000509)	HSF4 (ENSMMMG00000000300) #17	ENSMMMG00000000263 #18	MATCAP1 (ENSMMMG00000000193) #20	EXOC3L1 (ENSMMMG00000000159) #21	E2F4 (ENSMMMG00000000134) #22	ELMO3 (ENSMMMG00000000043) #23	ENSMMMG00000000022 #24	TMEM208 (ENSMMMG00000015906) #25	FHOD1 (ENSMMMG00000015324) #26	SLC9A5 (ENSMMMG00000015303) #27	PLEKHG4 (ENSMMMG00000015239) #28	KCTD19 (ENSMMMG00000015200) #29	LRRC36 (ENSMMMG00000015167) #30	TPPP3 (ENSMMMG00000015157) #31	ZDHHC1 (ENSMMMG00000015133) #32	HSD11B2 (ENSMMMG00000015122) #33	ATP6V0D1 (ENSMMMG00000015116) #34	AGRP (ENSMMMG00000015111) #35	RIPOR1 (ENSMMMG00000015092) #36	ENSMMMG00000015080 #37
Hystricomorpha	ANCESTRAL SPECIES	22	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.i.a #12	ENSGT00940000153793.j.a #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000042496 #12	ENSHGLG00000042617	ENSHGLG00000016814 #12	ENSHGLG00000012610	CES4A (ENSHGLG00000033432)	CBFB (ENSHGLG00000050469) #13	ENSHGLG00000046177	ENSHGLG00000016123 #14	ENSHGLG00000009942	B3GNT9 (ENSHGLG00000035794) #15	FBXL8 (ENSHGLG00000019079)	HSF4 (ENSHGLG00000014438) #17	ENSHGLG00000037771 #18	MATCAP1 (ENSHGLG00000011035) #20	EXOC3L1 (ENSHGLG00000010315) #21	E2F4 (ENSHGLG00000014276) #22	ELMO3 (ENSHGLG00000014154) #23	ENSHGLG00000019291 #24	ENSHGLG00000014519	TMEM208 (ENSHGLG00000015097) #25	FHOD1 (ENSHGLG00000012638) #26	SLC9A5 (ENSHGLG00000012224) #27	PLEKHG4 (ENSHGLG00000010252) #28	KCTD19 (ENSHGLG00000012309) #29	LRRC36 (ENSHGLG00000013489) #30	TPPP3 (ENSHGLG00000011640) #31	ZDHHC1 (ENSHGLG00000012449) #32	HSD11B2 (ENSHGLG00000012026) #33	ATP6V0D1 (ENSHGLG00000011430) #34	AGRP (ENSHGLG00000010211) #35	RIPOR1 (ENSHGLG00000012465) #36
Hystricomorpha_a	ANCESTRAL SPECIES	22	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.i.a #12	ENSGT00940000153793.j.a #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Guinea pig	MODERN SPECIES	22	ENSCPOG00000034407 #12	ENSCPOG00000005610 #12	ENSCPOG00000034227	ENSCPOG00000039038 #12	CES3 (ENSCPOG00000033893)	CES4A (ENSCPOG00000005603)	ENSCPOG00000010825 #13	PHAF1 (ENSCPOG00000010828) #14	B3GNT9 (ENSCPOG00000026402) #15	TRADD (ENSCPOG00000010831) #16	FBXL8 (ENSCPOG00000010832)	HSF4 (ENSCPOG00000010834) #17	ENSCPOG00000004946 #18	MATCAP1 (ENSCPOG00000037427) #20	EXOC3L1 (ENSCPOG00000010839) #21	E2F4 (ENSCPOG00000010845) #22	ELMO3 (ENSCPOG00000010852) #23	ENSCPOG00000025275 #24	TMEM208 (ENSCPOG00000010856) #25	FHOD1 (ENSCPOG00000010858) #26	SLC9A5 (ENSCPOG00000010865) #27	PLEKHG4 (ENSCPOG00000024564) #28	KCTD19 (ENSCPOG00000010870) #29	LRRC36 (ENSCPOG00000010878) #30	TPPP3 (ENSCPOG00000010883) #31	ZDHHC1 (ENSCPOG00000040494) #32	HSD11B2 (ENSCPOG00000010894) #33	ATP6V0D1 (ENSCPOG00000010904) #34	AGRP (ENSCPOG00000010909) #35	RIPOR1 (ENSCPOG00000004238) #36	CTCF (ENSCPOG00000010698) #37
Hystricomorpha_b	ANCESTRAL SPECIES	15	ENSGT00940000153793.i.a #12	ENSGT00940000153793.i.b.c #12	ENSGT00940000164375	ENSGT00940000153793.j.a #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Long-tailed chinchilla	MODERN SPECIES	191			ENSCLAG00000004810	ENSCLAG00000004482 #12	ENSCLAG00000004579 #12	CES3 (ENSCLAG00000003979)	CES4A (ENSCLAG00000003809)	CBFB (ENSCLAG00000003276) #13	PHAF1 (ENSCLAG00000011848) #14	TRADD (ENSCLAG00000013206) #16	FBXL8 (ENSCLAG00000012818)	HSF4 (ENSCLAG00000011421) #17	ENSCLAG00000010849 #18	MATCAP1 (ENSCLAG00000008743) #20	EXOC3L1 (ENSCLAG00000008542) #21	E2F4 (ENSCLAG00000008447) #22	ELMO3 (ENSCLAG00000009770) #23	ENSCLAG00000009119 #24	TMEM208 (ENSCLAG00000008905) #25	FHOD1 (ENSCLAG00000015436) #26	SLC9A5 (ENSCLAG00000013034) #27	ENSCLAG00000006869 #28	KCTD19 (ENSCLAG00000005454) #29	LRRC36 (ENSCLAG00000004344) #30	TPPP3 (ENSCLAG00000004256) #31	ZDHHC1 (ENSCLAG00000004092) #32	HSD11B2 (ENSCLAG00000003883) #33	ATP6V0D1 (ENSCLAG00000003151) #34	AGRP (ENSCLAG00000012740) #35	RIPOR1 (ENSCLAG00000016244) #36	ENSCLAG00000008635
Degu	MODERN SPECIES	52	ENSODEG00000015554 #12	ENSODEG00000017576 #12	ENSODEG00000016121	ENSODEG00000015656 #12	CES3 (ENSODEG00000016302)	CES4A (ENSODEG00000015763)	CBFB (ENSODEG00000016515) #13	PHAF1 (ENSODEG00000015277) #14	B3GNT9 (ENSODEG00000015783) #15	TRADD (ENSODEG00000016273) #16	FBXL8 (ENSODEG00000016675)	HSF4 (ENSODEG00000016261) #17	ENSODEG00000015937 #18	MATCAP1 (ENSODEG00000017236) #20	EXOC3L1 (ENSODEG00000015825) #21	ENSODEG00000015743 #22	ELMO3 (ENSODEG00000015567) #23	ENSODEG00000015353 #24	TMEM208 (ENSODEG00000015620) #25	FHOD1 (ENSODEG00000015610) #26	SLC9A5 (ENSODEG00000016195) #27	ENSODEG00000015992 #28	ENSODEG00000016452	KCTD19 (ENSODEG00000016312) #29	LRRC36 (ENSODEG00000015398) #30	TPPP3 (ENSODEG00000016027) #31	ZDHHC1 (ENSODEG00000015615) #32	HSD11B2 (ENSODEG00000015795) #33	ATP6V0D1 (ENSODEG00000016167) #34	AGRP (ENSODEG00000015217) #35	ENSODEG00000020348
Rodentia_B	ANCESTRAL SPECIES	21	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35
Kangaroo rat	MODERN SPECIES	337	Nae1 (ENSDORG00000013530)	Car7 (ENSDORG00000013532)	Pdp2 (ENSDORG00000024268)	Rrad (ENSDORG00000013540)	ENSDORG00000013543	ENSDORG00000029390	Cbfb (ENSDORG00000029036) #13	Phaf1 (ENSDORG00000015125) #14	B3gnt9 (ENSDORG00000030078) #15	Tradd (ENSDORG00000015126) #16	Fbxl8 (ENSDORG00000015127)	Hsf4 (ENSDORG00000015128) #17	Nol3 (ENSDORG00000026944) #18	Matcap1 (ENSDORG00000015129) #20	Exoc3l (ENSDORG00000015130) #21	ENSDORG00000015131 #22	Elmo3 (ENSDORG00000015132) #23	Fbxl9 (ENSDORG00000015136) #24	Tmem208 (ENSDORG00000013263) #25	Fhod1 (ENSDORG00000013253) #26	Slc9a5 (ENSDORG00000005859) #27	ENSDORG00000005865 #28	Kctd19 (ENSDORG00000005868) #29	Lrrc36 (ENSDORG00000005869) #30	Tppp3 (ENSDORG00000005871) #31	Zdhhc1 (ENSDORG00000003276) #32	Hsd11b2 (ENSDORG00000013965) #33	Atp6v0d1 (ENSDORG00000013966) #34	Agrp (ENSDORG00000013972) #35	Ripor1 (ENSDORG00000014643) #36	Ctcf (ENSDORG00000000111) #37
Myomorpha	ANCESTRAL SPECIES	22	ENSGT00390000017697.b	ENSGT00940000153793.g #12	ENSGT00940000153793.h #12	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35
Muroidea	ANCESTRAL SPECIES	19	ENSGT00390000017697.b	ENSGT00940000153793.g #12	ENSGT00940000164375	ENSGT00940000153793.h #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1060		ENSNGAG00000015448 #12	ENSNGAG00000013659 #12	Ces2h (ENSNGAG00000001203)	ENSNGAG00000001031	Ces4a (ENSNGAG00000015115)	Cbfb (ENSNGAG00000009578) #13	Phaf1 (ENSNGAG00000000365) #14	B3gnt9 (ENSNGAG00000015451) #15	Tradd (ENSNGAG00000014423) #16	Fbxl8 (ENSNGAG00000014216)	Hsf4 (ENSNGAG00000014341) #17	Nol3 (ENSNGAG00000010053) #18	Matcap1 (ENSNGAG00000008649) #20	Exoc3l (ENSNGAG00000011128) #21	ENSNGAG00000009573 #22	Elmo3 (ENSNGAG00000006509) #23	ENSNGAG00000019899 #24	Tmem208 (ENSNGAG00000012064) #25	Fhod1 (ENSNGAG00000011675) #26	Slc9a5 (ENSNGAG00000011230) #27	Plekhg4 (ENSNGAG00000013487) #28	Kctd19 (ENSNGAG00000017054) #29	Lrrc36 (ENSNGAG00000020479) #30	Tppp3 (ENSNGAG00000019748) #31	Zdhhc1 (ENSNGAG00000017132) #32	Hsd11b2 (ENSNGAG00000013345) #33	Atp6v0d1 (ENSNGAG00000013880) #34	Agrp (ENSNGAG00000011732) #35	Ripor1 (ENSNGAG00000012186) #36	Ctcf (ENSNGAG00000006559) #37
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00940000153793.h.c.a.b.a #12	ENSGT00940000153793.h.c.a.b.b #12	ENSGT00940000153793.h.c.a.a.a #12	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Murinae	ANCESTRAL SPECIES	15	ENSGT00940000153793.h.c.a.b.a #12	ENSGT00940000153793.h.c.a.b.b #12	ENSGT00940000153793.h.c.a.a.a.b #12	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Mus	ANCESTRAL SPECIES	6	ENSGT00940000153793.h.c.a.b.a #12	ENSGT00940000153793.h.c.a.b.b #12	ENSGT00940000153793.h.c.a.a.a.b #12	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000153793.h.c.a.b.a #12	ENSGT00940000153793.h.c.a.b.b #12	ENSGT00940000153793.h.c.a.a.a.b #12	ENSGT00940000164375	ENSGT00940000155200.m.b	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000153793.h.c.a.b.a #12	ENSGT00940000153793.h.c.a.b.b #12	ENSGT00940000153793.h.c.a.a.a.b #12	ENSGT00940000164375	ENSGT00940000155200.m.b	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Mouse	MODERN SPECIES	17	Ces2f (ENSMUSG00000062826) #12	Ces2g (ENSMUSG00000031877) #12	Ces2h (ENSMUSG00000091813)	Ces3a (ENSMUSG00000069922)	Ces3b (ENSMUSG00000062181)	Ces4a (ENSMUSG00000060560)	Cbfb (ENSMUSG00000031885) #13	Phaf1 (ENSMUSG00000031889) #14	B3gnt9 (ENSMUSG00000069920) #15	Tradd (ENSMUSG00000031887) #16	Fbxl8 (ENSMUSG00000033313)	Hsf4 (ENSMUSG00000033249) #17	Nol3 (ENSMUSG00000014776) #18	Matcap1 (ENSMUSG00000014837) #20	Exoc3l (ENSMUSG00000043251) #21	E2f4 (ENSMUSG00000014859) #22	Elmo3 (ENSMUSG00000014791) #23	Fbxl9 (ENSMUSG00000041679) #24	Tmem208 (ENSMUSG00000014856) #25	Fhod1 (ENSMUSG00000014778) #26	Slc9a5 (ENSMUSG00000014786) #27	Plekhg4 (ENSMUSG00000014782) #28	Kctd19 (ENSMUSG00000051648) #29	Lrrc36 (ENSMUSG00000054320) #30	Tppp3 (ENSMUSG00000014846) #31	Zdhhc1 (ENSMUSG00000039199) #32	Hsd11b2 (ENSMUSG00000031891) #33	Atp6v0d1 (ENSMUSG00000013160) #34	Agrp (ENSMUSG00000005705) #35	Ripor1 (ENSMUSG00000038604) #36	Ctcf (ENSMUSG00000005698) #37
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000153793.h.c.a.b.a #12	ENSGT00940000153793.h.c.a.b.b #12	ENSGT00940000153793.h.c.a.a.a.b #12	ENSGT00940000164375	ENSGT00940000155200.m.b	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Steppe mouse	MODERN SPECIES	2682						Ces4a (ENSMSIG00000013129)	Cbfb (ENSMSIG00000013151) #13	Phaf1 (ENSMSIG00000013286) #14	B3gnt9 (ENSMSIG00000013307) #15	Tradd (ENSMSIG00000013313) #16	Fbxl8 (ENSMSIG00000013320)	Hsf4 (ENSMSIG00000013332) #17	Nol3 (ENSMSIG00000014052) #18	Matcap1 (ENSMSIG00000014061) #20	Exoc3l (ENSMSIG00000014129) #21	E2f4 (ENSMSIG00000014157) #22	Elmo3 (ENSMSIG00000014196) #23	Fbxl9 (ENSMSIG00000014362) #24	ENSMSIG00000014410 #25	Fhod1 (ENSMSIG00000014442) #26	Slc9a5 (ENSMSIG00000015767) #27	Plekhg4 (ENSMSIG00000015844) #28	Kctd19 (ENSMSIG00000016043) #29	Lrrc36 (ENSMSIG00000016086) #30	Tppp3 (ENSMSIG00000016207) #31	Zdhhc1 (ENSMSIG00000016223) #32	Hsd11b2 (ENSMSIG00000016242) #33	Atp6v0d1 (ENSMSIG00000016254) #34	Ripor1 (ENSMSIG00000016315) #36	Agrp (ENSMSIG00000016436) #35	Ctcf (ENSMSIG00000016451) #37
spretus	MODERN SPECIES	17	Ces2f (MGP_SPRETEiJ_G0032576) #12	Ces2g (MGP_SPRETEiJ_G0032577) #12	Ces2h (MGP_SPRETEiJ_G0032578)	MGP_SPRETEiJ_G0032579	MGP_SPRETEiJ_G0032580	Ces4a (MGP_SPRETEiJ_G0032581)	Cbfb (MGP_SPRETEiJ_G0032582) #13	Phaf1 (MGP_SPRETEiJ_G0032583) #14	B3gnt9 (MGP_SPRETEiJ_G0032584) #15	Tradd (MGP_SPRETEiJ_G0032585) #16	Fbxl8 (MGP_SPRETEiJ_G0032586)	Hsf4 (MGP_SPRETEiJ_G0032587) #17	Nol3 (MGP_SPRETEiJ_G0032588) #18	Matcap1 (MGP_SPRETEiJ_G0032589) #20	Exoc3l (MGP_SPRETEiJ_G0032590) #21	E2f4 (MGP_SPRETEiJ_G0032591) #22	Elmo3 (MGP_SPRETEiJ_G0032592) #23	MGP_SPRETEiJ_G0032593 #24	Tmem208 (MGP_SPRETEiJ_G0032594) #25	MGP_SPRETEiJ_G0032595 #26	Slc9a5 (MGP_SPRETEiJ_G0032596) #27	Plekhg4 (MGP_SPRETEiJ_G0032597) #28	Kctd19 (MGP_SPRETEiJ_G0032598) #29	Lrrc36 (MGP_SPRETEiJ_G0032599) #30	Tppp3 (MGP_SPRETEiJ_G0032600) #31	Zdhhc1 (MGP_SPRETEiJ_G0032601) #32	Hsd11b2 (MGP_SPRETEiJ_G0032602) #33	Atp6v0d1 (MGP_SPRETEiJ_G0032603) #34	Agrp (MGP_SPRETEiJ_G0032604) #35	Ripor1 (MGP_SPRETEiJ_G0032605) #36	Ctcf (MGP_SPRETEiJ_G0032606) #37
Ryukyu mouse	MODERN SPECIES	17	Ces2f (MGP_CAROLIEiJ_G0031458) #12	Ces2g (MGP_CAROLIEiJ_G0031459) #12	MGP_CAROLIEiJ_G0031460 #12	Ces2h (MGP_CAROLIEiJ_G0031461)	MGP_CAROLIEiJ_G0031462	Ces4a (MGP_CAROLIEiJ_G0031463)	Cbfb (MGP_CAROLIEiJ_G0031464) #13	Phaf1 (MGP_CAROLIEiJ_G0031465) #14	B3gnt9 (MGP_CAROLIEiJ_G0031466) #15	Tradd (MGP_CAROLIEiJ_G0031467) #16	Fbxl8 (MGP_CAROLIEiJ_G0031468)	Hsf4 (MGP_CAROLIEiJ_G0031469) #17	Nol3 (MGP_CAROLIEiJ_G0031470) #18	Matcap1 (MGP_CAROLIEiJ_G0031471) #20	Exoc3l (MGP_CAROLIEiJ_G0031472) #21	E2f4 (MGP_CAROLIEiJ_G0031473) #22	Elmo3 (MGP_CAROLIEiJ_G0031474) #23	MGP_CAROLIEiJ_G0031475 #24	Tmem208 (MGP_CAROLIEiJ_G0031476) #25	Fhod1 (MGP_CAROLIEiJ_G0031477) #26	Slc9a5 (MGP_CAROLIEiJ_G0031478) #27	Plekhg4 (MGP_CAROLIEiJ_G0031479) #28	Kctd19 (MGP_CAROLIEiJ_G0031480) #29	Lrrc36 (MGP_CAROLIEiJ_G0031481) #30	Tppp3 (MGP_CAROLIEiJ_G0031482) #31	Zdhhc1 (MGP_CAROLIEiJ_G0031483) #32	Hsd11b2 (MGP_CAROLIEiJ_G0031484) #33	Atp6v0d1 (MGP_CAROLIEiJ_G0031485) #34	Agrp (MGP_CAROLIEiJ_G0031486) #35	Ripor1 (MGP_CAROLIEiJ_G0031487) #36	Ctcf (MGP_CAROLIEiJ_G0031488) #37
Shrew mouse	MODERN SPECIES	12	Ces2f (MGP_PahariEiJ_G0023058) #12	Ces2g (MGP_PahariEiJ_G0023059) #12	Ces2h (MGP_PahariEiJ_G0023060)	MGP_PahariEiJ_G0023061	MGP_PahariEiJ_G0023062	Ces4a (MGP_PahariEiJ_G0023063)	Cbfb (MGP_PahariEiJ_G0023064) #13	Phaf1 (MGP_PahariEiJ_G0023065) #14	B3gnt9 (MGP_PahariEiJ_G0023066) #15	Tradd (MGP_PahariEiJ_G0023067) #16	Fbxl8 (MGP_PahariEiJ_G0023068)	Hsf4 (MGP_PahariEiJ_G0023069) #17	Nol3 (MGP_PahariEiJ_G0023070) #18	Matcap1 (MGP_PahariEiJ_G0023071) #20	Exoc3l (MGP_PahariEiJ_G0023072) #21	E2f4 (MGP_PahariEiJ_G0023073) #22	Elmo3 (MGP_PahariEiJ_G0023074) #23	Fbxl9 (MGP_PahariEiJ_G0023075) #24	Tmem208 (MGP_PahariEiJ_G0023076) #25	Fhod1 (MGP_PahariEiJ_G0023077) #26	Slc9a5 (MGP_PahariEiJ_G0023078) #27	Plekhg4 (MGP_PahariEiJ_G0023079) #28	Kctd19 (MGP_PahariEiJ_G0023080) #29	MGP_PahariEiJ_G0023081 #30	Tppp3 (MGP_PahariEiJ_G0023082) #31	Zdhhc1 (MGP_PahariEiJ_G0023083) #32	Hsd11b2 (MGP_PahariEiJ_G0023084) #33	Atp6v0d1 (MGP_PahariEiJ_G0023085) #34	Agrp (MGP_PahariEiJ_G0023086) #35	Ripor1 (MGP_PahariEiJ_G0023087) #36	Ctcf (MGP_PahariEiJ_G0023088) #37
Rat	MODERN SPECIES	10	Rps27a-ps6 (ENSRNOG00000029317)	ENSRNOG00000070405	Slc25a36l1 (ENSRNOG00000054284)	Ces2g (ENSRNOG00000070043) #12	Ces2h (ENSRNOG00000039079)	ENSRNOG00000066514	Ces4a (ENSRNOG00000014257)	Cbfb (ENSRNOG00000014647) #13	Phaf1 (ENSRNOG00000014668) #14	B3gnt9 (ENSRNOG00000053895) #15	Tradd (ENSRNOG00000015179) #16	Fbxl8 (ENSRNOG00000015242)	Hsf4 (ENSRNOG00000015253) #17	Nol3 (ENSRNOG00000015588) #18	Matcap1 (ENSRNOG00000015625) #20	E2f4 (ENSRNOG00000015708) #22	Elmo3 (ENSRNOG00000015800) #23	Lrrc29 (ENSRNOG00000025231) #24	Tmem208 (ENSRNOG00000015974) #25	Fhod1 (ENSRNOG00000054625) #26	Slc9a5 (ENSRNOG00000028844) #27	Plekhg4 (ENSRNOG00000016479) #28	Kctd19 (ENSRNOG00000016760) #29	Lrrc36 (ENSRNOG00000016854) #30	Tppp3 (ENSRNOG00000016890) #31	Zdhhc1 (ENSRNOG00000017045) #32	Hsd11b2 (ENSRNOG00000017084) #33	Atp6v0d1 (ENSRNOG00000017235) #34	Agrp (ENSRNOG00000039001) #35	ENSRNOG00000064062	Ripor1 (ENSRNOG00000017604) #36
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000153793.h.c.a.b.a #12	ENSGT00940000153793.h.c.a.b.b #12	ENSGT00940000153793.h.c.a.a.a.d #12	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Cricetinae	ANCESTRAL SPECIES	16	ENSGT00940000153793.h.c.a.b.a #12	ENSGT00940000153793.h.c.a.b.b #12	ENSGT00940000153793.h.c.a.a.a.d #12	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Chinese hamster chok1gshd	MODERN SPECIES	112	ENSCGRG00001011776 #12	Ces2h (ENSCGRG00001009506)	ENSCGRG00001019809 #12	ENSCGRG00001009474	ENSCGRG00001015634	Ces4a (ENSCGRG00001001471)	Cbfb (ENSCGRG00001022815) #13	Phaf1 (ENSCGRG00001006064) #14	B3gnt9 (ENSCGRG00001019496) #15	Tradd (ENSCGRG00001011379) #16	Fbxl8 (ENSCGRG00001016684)	Hsf4 (ENSCGRG00001010856) #17	Nol3 (ENSCGRG00001016708) #18	Matcap1 (ENSCGRG00001022963) #20	Exoc3l (ENSCGRG00001003705) #21	E2f4 (ENSCGRG00001008394) #22	Elmo3 (ENSCGRG00001001125) #23	Fbxl9 (ENSCGRG00001000209) #24	Tmem208 (ENSCGRG00001009390) #25	Fhod1 (ENSCGRG00001019021) #26	Slc9a5 (ENSCGRG00001000242) #27	Plekhg4 (ENSCGRG00001016429) #28	Kctd19 (ENSCGRG00001024518) #29	Lrrc36 (ENSCGRG00001000114) #30	Tppp3 (ENSCGRG00001012944) #31	Zdhhc1 (ENSCGRG00001006487) #32	Hsd11b2 (ENSCGRG00001022477) #33	Atp6v0d1 (ENSCGRG00001014538) #34	Agrp (ENSCGRG00001016032) #35	Ripor1 (ENSCGRG00001017908) #36	Ctcf (ENSCGRG00001006622) #37
Golden Hamster	MODERN SPECIES	677	ENSMAUG00000014101 #12	Ces2e (ENSMAUG00000014921) #12	ENSMAUG00000018177 #12	Ces2h (ENSMAUG00000000063)	ENSMAUG00000014836	Ces4a (ENSMAUG00000018020)	Cbfb (ENSMAUG00000017365) #13	Phaf1 (ENSMAUG00000000635) #14	B3gnt9 (ENSMAUG00000000090) #15	Tradd (ENSMAUG00000000327) #16	Fbxl8 (ENSMAUG00000018497)	Hsf4 (ENSMAUG00000000872) #17	Nol3 (ENSMAUG00000001852) #18	Matcap1 (ENSMAUG00000002709) #20	Exoc3l (ENSMAUG00000000438) #21	ENSMAUG00000001090 #22	ENSMAUG00000003972	Lrrn3 (ENSMAUG00000006396)	Dock4 (ENSMAUG00000004565)	Zfp277 (ENSMAUG00000009201)	ENSMAUG00000012490	Ifrd1 (ENSMAUG00000013118)	Lsmem1 (ENSMAUG00000013434)	Scin (ENSMAUG00000010111)	Arl4a (ENSMAUG00000013648)	Etv1 (ENSMAUG00000015439)	ENSMAUG00000017823	Dgkb (ENSMAUG00000014209)	Agmo (ENSMAUG00000000152)	Meox2 (ENSMAUG00000015354)	Crppa (ENSMAUG00000014377)
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00940000153793.h.c.a.a.a.c.a #12	ENSGT00940000153793.h.c.a.b.a #12	ENSGT00940000153793.h.c.a.b.b #12	ENSGT00940000164375	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Prairie vole	MODERN SPECIES	12	Ciao2b (ENSMOCG00000006278)	Ces2a (ENSMOCG00000003082) #12	ENSMOCG00000002668 #12	Ces2h (ENSMOCG00000001262)	ENSMOCG00000018149	Ces4a (ENSMOCG00000021744)	Cbfb (ENSMOCG00000013533) #13	Phaf1 (ENSMOCG00000008111) #14	B3gnt9 (ENSMOCG00000008518) #15	Tradd (ENSMOCG00000014235) #16	Fbxl8 (ENSMOCG00000005462)	Hsf4 (ENSMOCG00000017670) #17	Nol3 (ENSMOCG00000013389) #18	Matcap1 (ENSMOCG00000020057) #20	Exoc3l (ENSMOCG00000017278) #21	E2f4 (ENSMOCG00000006353) #22	Elmo3 (ENSMOCG00000009955) #23	ENSMOCG00000020837 #24	ENSMOCG00000021484	ENSMOCG00000020885 #25	Fhod1 (ENSMOCG00000015100) #26	Slc9a5 (ENSMOCG00000000567) #27	Plekhg4 (ENSMOCG00000021633) #28	Kctd19 (ENSMOCG00000013085) #29	Lrrc36 (ENSMOCG00000001566) #30	Tppp3 (ENSMOCG00000022557) #31	Zdhhc1 (ENSMOCG00000022202) #32	Hsd11b2 (ENSMOCG00000002599) #33	ENSMOCG00000001313 #34	Agrp (ENSMOCG00000008086) #35	Ripor1 (ENSMOCG00000013026) #36
Northern American deer mouse	MODERN SPECIES	18	ENSPEMG00000024621 #12	ENSPEMG00000028995 #12	ENSPEMG00000027583 #12	Ces2h (ENSPEMG00000028141)	ENSPEMG00000011511	Ces4a (ENSPEMG00000011474)	Cbfb (ENSPEMG00000001647) #13	Phaf1 (ENSPEMG00000011386) #14	B3gnt9 (ENSPEMG00000025933) #15	Tradd (ENSPEMG00000009250) #16	Fbxl8 (ENSPEMG00000016420)	Hsf4 (ENSPEMG00000008346) #17	Nol3 (ENSPEMG00000003782) #18	Matcap1 (ENSPEMG00000008792) #20	Exoc3l (ENSPEMG00000015025) #21	E2f4 (ENSPEMG00000003342) #22	Elmo3 (ENSPEMG00000009050) #23	Fbxl9 (ENSPEMG00000017442) #24	Tmem208 (ENSPEMG00000011151) #25	Fhod1 (ENSPEMG00000024184) #26	Slc9a5 (ENSPEMG00000000684) #27	Plekhg4 (ENSPEMG00000002713) #28	Kctd19 (ENSPEMG00000012851) #29	Lrrc36 (ENSPEMG00000016059) #30	Tppp3 (ENSPEMG00000016560) #31	Zdhhc1 (ENSPEMG00000014208) #32	Hsd11b2 (ENSPEMG00000014235) #33	Atp6v0d1 (ENSPEMG00000010243) #34	Agrp (ENSPEMG00000026382) #35	Ripor1 (ENSPEMG00000014437) #36	Ctcf (ENSPEMG00000018300) #37
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	67	Gcc1 (ENSJJAG00000000812)	Grm8 (ENSJJAG00000016613)	ENSJJAG00000010202	Gpr37 (ENSJJAG00000014629)	ENSJJAG00000011611	Tmem229a (ENSJJAG00000012347)	ENSJJAG00000011717	ENSJJAG00000022467	Hyal4 (ENSJJAG00000020961)	Hyal6 (ENSJJAG00000018979)	Wasl (ENSJJAG00000010164)	Lmod2 (ENSJJAG00000001036)	Asb15 (ENSJJAG00000012943)	ENSJJAG00000010459	Slc13a1 (ENSJJAG00000022062)	ENSJJAG00000010213 #22	Tas2r118 (ENSJJAG00000000517)	ENSJJAG00000021889	Rnf148 (ENSJJAG00000020410)	Rnf133 (ENSJJAG00000005201)	Cadps2 (ENSJJAG00000016732)	Fezf1 (ENSJJAG00000014803)	Aass (ENSJJAG00000003015)	Ptprz1 (ENSJJAG00000014324)	ENSJJAG00000018547	ENSJJAG00000020378	Fam3c (ENSJJAG00000019764)	Wnt16 (ENSJJAG00000016207)	ENSJJAG00000013375	Cped1 (ENSJJAG00000023207)	Ing3 (ENSJJAG00000007662)
Lesser Egyptian jerboa	MODERN SPECIES	85	Lepr (ENSJJAG00000001138)	ENSJJAG00000024179	ENSJJAG00000023828	ENSJJAG00000014277	Ak4 (ENSJJAG00000014122)	ENSJJAG00000010970	Cbfb (ENSJJAG00000013223) #13	ENSJJAG00000012442 #14	B3gnt9 (ENSJJAG00000023578) #15	Tradd (ENSJJAG00000008375) #16	Fbxl8 (ENSJJAG00000021256)	Hsf4 (ENSJJAG00000001368) #17	Nol3 (ENSJJAG00000024314) #18	Matcap1 (ENSJJAG00000012976) #20	Exoc3l (ENSJJAG00000020372) #21	ENSJJAG00000013722 #22	Elmo3 (ENSJJAG00000013057) #23	Fbxl9 (ENSJJAG00000014941) #24	ENSJJAG00000023968 #25	Fhod1 (ENSJJAG00000000338) #26	Slc9a5 (ENSJJAG00000007169) #27	ENSJJAG00000003130	ENSJJAG00000010549 #28	Kctd19 (ENSJJAG00000010989) #29	Lrrc36 (ENSJJAG00000020090) #30	Tppp3 (ENSJJAG00000013386) #31	Zdhhc1 (ENSJJAG00000000584) #32	ENSJJAG00000023733	Hsd11b2 (ENSJJAG00000019696) #33	ENSJJAG00000013926	Atp6v0d1 (ENSJJAG00000019377) #34
Lagomorpha	ANCESTRAL SPECIES	19				ENSGT00940000164375.c	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132.j #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Pika	MODERN SPECIES	3466			ENSOPRG00000014884 #12	ENSOPRG00000014908 #12	ENSOPRG00000014933 #12	CES3 (ENSOPRG00000014976)	ENSOPRG00000018431	CBFB (ENSOPRG00000015006) #13	PHAF1 (ENSOPRG00000015015) #14	TRADD (ENSOPRG00000015048) #16	FBXL8 (ENSOPRG00000015068)	HSF4 (ENSOPRG00000015074) #17	ENSOPRG00000015114 #18	MATCAP1 (ENSOPRG00000015125) #20	EXOC3L1 (ENSOPRG00000015144) #21	E2F4 (ENSOPRG00000015165) #22	ELMO3 (ENSOPRG00000015186) #23
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	14	ENSOCUG00000023452	PAG1 (ENSOCUG00000014767)	FABP5 (ENSOCUG00000010425)	ENSOCUG00000007445	FABP12 (ENSOCUG00000013189)	SNX16 (ENSOCUG00000023666)	ENSOCUG00000035758	IMPA1 (ENSOCUG00000014535)	CHMP4C (ENSOCUG00000006847)	ENSOCUG00000023213	RALYL (ENSOCUG00000025694)	ENSOCUG00000032856	ENSOCUG00000024529	ENSOCUG00000026096	LRRCC1 (ENSOCUG00000014653)	ENSOCUG00000031215 #22	ENSOCUG00000012890	ENSOCUG00000024948	CA13 (ENSOCUG00000007328)	ENSOCUG00000005039	ENSOCUG00000035812	CA3 (ENSOCUG00000011736)	CA2 (ENSOCUG00000011742)	ATP6V0D2 (ENSOCUG00000010247) ##34	PSKH2 (ENSOCUG00000003992)	ENSOCUG00000026370	SLC7A13 (ENSOCUG00000017971)	WWP1 (ENSOCUG00000001081)	RMDN1 (ENSOCUG00000001086)	CPNE3 (ENSOCUG00000017961)	CNGB3 (ENSOCUG00000017962)
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	16	ENSOCUG00000025273 #12	ENSOCUG00000025241 #12	ENSOCUG00000024128 #12	ENSOCUG00000017453 #12	ENSOCUG00000034887 #12	CES3 (ENSOCUG00000005152)	CES4A (ENSOCUG00000005162)	ENSOCUG00000033074 #13	PHAF1 (ENSOCUG00000005173) #14	TRADD (ENSOCUG00000025249) #16	FBXL8 (ENSOCUG00000009996)	HSF4 (ENSOCUG00000010001) #17	ENSOCUG00000010013 #18	MATCAP1 (ENSOCUG00000025033) #20	EXOC3L1 (ENSOCUG00000010019) #21	ENSOCUG00000010022 #22	ELMO3 (ENSOCUG00000010030) #23	ENSOCUG00000010035 #24	TMEM208 (ENSOCUG00000026215) #25	FHOD1 (ENSOCUG00000010039) #26	SLC9A5 (ENSOCUG00000010053) #27	PLEKHG4 (ENSOCUG00000010061) #28	KCTD19 (ENSOCUG00000010077) #29	LRRC36 (ENSOCUG00000010080) #30	ENSOCUG00000038328 #31	ZDHHC1 (ENSOCUG00000011825) #32	HSD11B2 (ENSOCUG00000011843) #33	ATP6V0D1 (ENSOCUG00000011850) #34	AGRP (ENSOCUG00000011856) #35	RIPOR1 (ENSOCUG00000008968) #36	CTCF (ENSOCUG00000008983) #37
Rabbit	MODERN SPECIES	1338																ENSOCUG00000024747 #22
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Eulipotyphla	ANCESTRAL SPECIES	3										ENSGT00940000153528.a.b.a.a #14	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30
Hedgehog	MODERN SPECIES	8614																E2F4 (ENSEEUG00000014066) #22	ELMO3 (ENSEEUG00000014436) #23	ENSEEUG00000014542 #24	TMEM208 (ENSEEUG00000014664) #25	FHOD1 (ENSEEUG00000003091) #26	SLC9A5 (ENSEEUG00000003251) #27	ENSEEUG00000003436 #28	KCTD19 (ENSEEUG00000003698) #29
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Carnivora	ANCESTRAL SPECIES	2	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Felidae	ANCESTRAL SPECIES	7	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Panthera	ANCESTRAL SPECIES	10	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Panthera_a	ANCESTRAL SPECIES	8	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
leopard	MODERN SPECIES	28	CA7 (ENSPPRG00000005536)	PDP2 (ENSPPRG00000016536)	CDH16 (ENSPPRG00000009161)	RRAD (ENSPPRG00000009391)	CIAO2B (ENSPPRG00000009809)	CES2 (ENSPPRG00000009977) #12	CES3 (ENSPPRG00000010944)	CES4A (ENSPPRG00000012641)	CBFB (ENSPPRG00000013240) #13	PHAF1 (ENSPPRG00000013795) #14	TRADD (ENSPPRG00000014449) #16	FBXL8 (ENSPPRG00000016650)	HSF4 (ENSPPRG00000019220) #17	ENSPPRG00000020293 #18	MATCAP1 (ENSPPRG00000021263) #20	E2F4 (ENSPPRG00000024105) #22	ELMO3 (ENSPPRG00000023242) #23	ENSPPRG00000022970 #24	ENSPPRG00000022903	TMEM208 (ENSPPRG00000000065) #25	SLC9A5 (ENSPPRG00000001927) #27	PLEKHG4 (ENSPPRG00000004387) #28	KCTD19 (ENSPPRG00000005410) #29	LRRC36 (ENSPPRG00000007845) #30	TPPP3 (ENSPPRG00000008182) #31	ZDHHC1 (ENSPPRG00000008488) #32	HSD11B2 (ENSPPRG00000008932) #33	ATP6V0D1 (ENSPPRG00000009684) #34	AGRP (ENSPPRG00000009953) #35	RIPOR1 (ENSPPRG00000013506) #36	CTCF (ENSPPRG00000014317) #37
lion	MODERN SPECIES	15	CDH16 (ENSPLOG00000012664)	RRAD (ENSPLOG00000013148)	CIAO2B (ENSPLOG00000013197)	ENSPLOG00000013241	CES3 (ENSPLOG00000013294)	CES4A (ENSPLOG00000013533)	ENSPLOG00000013982 #13	PHAF1 (ENSPLOG00000014041) #14	B3GNT9 (ENSPLOG00000014082) #15	TRADD (ENSPLOG00000014099) #16	FBXL8 (ENSPLOG00000014173)	HSF4 (ENSPLOG00000014216) #17	ENSPLOG00000014452 #18	MATCAP1 (ENSPLOG00000014489) #20	EXOC3L1 (ENSPLOG00000014607) #21	E2F4 (ENSPLOG00000014749) #22	ELMO3 (ENSPLOG00000014820) #23	ENSPLOG00000015357 #24	TMEM208 (ENSPLOG00000015468) #25	FHOD1 (ENSPLOG00000015635) #26	SLC9A5 (ENSPLOG00000015829) #27	PLEKHG4 (ENSPLOG00000016002) #28	KCTD19 (ENSPLOG00000016337) #29	LRRC36 (ENSPLOG00000016474) #30	TPPP3 (ENSPLOG00000016652) #31	ZDHHC1 (ENSPLOG00000016693) #32	HSD11B2 (ENSPLOG00000016794) #33	ATP6V0D1 (ENSPLOG00000016862) #34	AGRP (ENSPLOG00000016913) #35	RIPOR1 (ENSPLOG00000017003) #36	CTCF (ENSPLOG00000017439) #37
Tiger	MODERN SPECIES	320	CA7 (ENSPTIG00000019280)	PDP2 (ENSPTIG00000006204)	CDH16 (ENSPTIG00000019612)	RRAD (ENSPTIG00000001809)	CIAO2B (ENSPTIG00000003290)	CES2 (ENSPTIG00000004063) #12	CES3 (ENSPTIG00000004489)	CES4A (ENSPTIG00000005543)	ENSPTIG00000006285 #13	PHAF1 (ENSPTIG00000006322) #14	TRADD (ENSPTIG00000007077) #16	FBXL8 (ENSPTIG00000007308)	HSF4 (ENSPTIG00000007435) #17	ENSPTIG00000008436 #18	MATCAP1 (ENSPTIG00000008588) #20	E2F4 (ENSPTIG00000009532) #22	ELMO3 (ENSPTIG00000009736) #23	ENSPTIG00000010332 #24	TMEM208 (ENSPTIG00000010543) #25	SLC9A5 (ENSPTIG00000011105) #27	PLEKHG4 (ENSPTIG00000011316) #28	KCTD19 (ENSPTIG00000011820) #29	LRRC36 (ENSPTIG00000011930) #30	TPPP3 (ENSPTIG00000012322) #31	ZDHHC1 (ENSPTIG00000012632) #32	HSD11B2 (ENSPTIG00000013334) #33	ATP6V0D1 (ENSPTIG00000013473) #34	AGRP (ENSPTIG00000013563) #35	CTCF (ENSPTIG00000015459) #37	CARMIL2 (ENSPTIG00000016035)	ACD (ENSPTIG00000017755)
Cat	MODERN SPECIES	246	CDH16 (ENSFCAG00000012774)	RRAD (ENSFCAG00000026895)	CIAO2B (ENSFCAG00000029216)	CES2 (ENSFCAG00000003806) #12	ENSFCAG00000001200	CES4A (ENSFCAG00000003809)	CBFB (ENSFCAG00000045823) #13	CE2H16orf70 (ENSFCAG00000009260) #14	B3GNT9 (ENSFCAG00000046265) #15	TRADD (ENSFCAG00000043839) #16	FBXL8 (ENSFCAG00000009263)	HSF4 (ENSFCAG00000014099) #17	NOL3 (ENSFCAG00000009264) #18	MATCAP1 (ENSFCAG00000009265) #20	EXOC3L1 (ENSFCAG00000009267) #21	E2F4 (ENSFCAG00000009268) #22	ELMO3 (ENSFCAG00000009269) #23	ENSFCAG00000031746 #24	TMEM208 (ENSFCAG00000024313) #25	FHOD1 (ENSFCAG00000009272) #26	SLC9A5 (ENSFCAG00000028820) #27	PLEKHG4 (ENSFCAG00000009274) #28	KCTD19 (ENSFCAG00000009275) #29	LRRC36 (ENSFCAG00000009276) #30	TPPP3 (ENSFCAG00000009277) #31	ZDHHC1 (ENSFCAG00000018593) #32	HSD11B2 (ENSFCAG00000027537) #33	ATP6V0D1 (ENSFCAG00000003433) #34	AGRP (ENSFCAG00000037497) #35	RIPOR1 (ENSFCAG00000009278) #36	CTCF (ENSFCAG00000003492) #37
Caniformia	ANCESTRAL SPECIES	1	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Ursidae	ANCESTRAL SPECIES	8	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Ursus	ANCESTRAL SPECIES	41	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
American black bear	MODERN SPECIES	25						ENSUAMG00000015699 #13	PHAF1 (ENSUAMG00000015701) #14	B3GNT9 (ENSUAMG00000015703) #15	TRADD (ENSUAMG00000015704) #16	ENSUAMG00000015706	FBXL8 (ENSUAMG00000015707)	HSF4 (ENSUAMG00000015720) #17	MATCAP1 (ENSUAMG00000015885) #20	ENSUAMG00000015886 #18	EXOC3L1 (ENSUAMG00000015887) #21	E2F4 (ENSUAMG00000015888) #22	ELMO3 (ENSUAMG00000015889) #23	ENSUAMG00000015890 #24	TMEM208 (ENSUAMG00000015892) #25	ENSUAMG00000015894 #26	SLC9A5 (ENSUAMG00000015895) #27	ENSUAMG00000015897 #28	ENSUAMG00000015899 #28	KCTD19 (ENSUAMG00000015905) #29	LRRC36 (ENSUAMG00000015910) #30	TPPP3 (ENSUAMG00000015912) #31	ZDHHC1 (ENSUAMG00000015914) #32	ENSUAMG00000015917 #33	ENSUAMG00000015918 #33	ATP6V0D1 (ENSUAMG00000015919) #34	AGRP (ENSUAMG00000015920) #35
Polar bear	MODERN SPECIES	245	NAE1 (ENSUMAG00000020485)	CA7 (ENSUMAG00000020388)	PDP2 (ENSUMAG00000020386)	CDH16 (ENSUMAG00000020327)	RRAD (ENSUMAG00000020298)	CIAO2B (ENSUMAG00000020292)	CES2 (ENSUMAG00000020281) #12	ENSUMAG00000020276	ENSUMAG00000020272 #13	PHAF1 (ENSUMAG00000020258) #14	B3GNT9 (ENSUMAG00000020254) #15	TRADD (ENSUMAG00000020250) #16	HSF4 (ENSUMAG00000020034) #17	MATCAP1 (ENSUMAG00000020005) #20	EXOC3L1 (ENSUMAG00000019991) #21	E2F4 (ENSUMAG00000019980) #22	ELMO3 (ENSUMAG00000019904) #23	ENSUMAG00000019889 #24	TMEM208 (ENSUMAG00000019884) #25	SLC9A5 (ENSUMAG00000019821) #27	ENSUMAG00000019816 #28	ENSUMAG00000019806 #28	KCTD19 (ENSUMAG00000019780) #29	LRRC36 (ENSUMAG00000019753) #30	TPPP3 (ENSUMAG00000019745) #31	ZDHHC1 (ENSUMAG00000019731) #32	HSD11B2 (ENSUMAG00000019726) #33	ATP6V0D1 (ENSUMAG00000019723) #34	AGRP (ENSUMAG00000019719) #35	RIPOR1 (ENSUMAG00000019710) #36	CTCF (ENSUMAG00000019706) #37
Giant Panda	MODERN SPECIES	3	PDP2 (ENSAMEG00000019711)	CDH16 (ENSAMEG00000017136)	RRAD (ENSAMEG00000024334)	CIAO2B (ENSAMEG00000025163)	CES2 (ENSAMEG00000017174) #12	CES3 (ENSAMEG00000017207)	CBFB (ENSAMEG00000031354) #13	PHAF1 (ENSAMEG00000017219) #14	B3GNT9 (ENSAMEG00000026064) #15	TRADD (ENSAMEG00000017232) #16	FBXL8 (ENSAMEG00000017236)	HSF4 (ENSAMEG00000017238) #17	ENSAMEG00000017263 #18	MATCAP1 (ENSAMEG00000017266) #20	EXOC3L1 (ENSAMEG00000017273) #21	E2F4 (ENSAMEG00000017275) #22	ELMO3 (ENSAMEG00000017281) #23	ENSAMEG00000017316 #24	TMEM208 (ENSAMEG00000017322) #25	SLC9A5 (ENSAMEG00000017339) #27	PLEKHG4 (ENSAMEG00000017357) #28	KCTD19 (ENSAMEG00000017368) #29	LRRC36 (ENSAMEG00000017372) #30	ZDHHC1 (ENSAMEG00000017379) #32	HSD11B2 (ENSAMEG00000017389) #33	ATP6V0D1 (ENSAMEG00000017393) #34	AGRP (ENSAMEG00000017404) #35	RIPOR1 (ENSAMEG00000017405) #36	CTCF (ENSAMEG00000017438) #37	CARMIL2 (ENSAMEG00000017460)	ACD (ENSAMEG00000017492)
Mustelinae	ANCESTRAL SPECIES	6	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
American mink	MODERN SPECIES	2	PDP2 (ENSNVIG00000010937)	CDH16 (ENSNVIG00000010820)	RRAD (ENSNVIG00000010800)	CIAO2B (ENSNVIG00000010786)	CES2 (ENSNVIG00000010773) #12	CES3 (ENSNVIG00000010721)	CBFB (ENSNVIG00000010680) #13	PHAF1 (ENSNVIG00000010652) #14	B3GNT9 (ENSNVIG00000010650) #15	TRADD (ENSNVIG00000010625) #16	FBXL8 (ENSNVIG00000010608)	HSF4 (ENSNVIG00000010576) #17	ENSNVIG00000010569 #18	MATCAP1 (ENSNVIG00000010557) #20	EXOC3L1 (ENSNVIG00000010533) #21	E2F4 (ENSNVIG00000010516) #22	ELMO3 (ENSNVIG00000010475) #23	ENSNVIG00000010464 #24	TMEM208 (ENSNVIG00000010434) #25	FHOD1 (ENSNVIG00000010420) #26	ENSNVIG00000010413 #26	SLC9A5 (ENSNVIG00000010397) #27	PLEKHG4 (ENSNVIG00000010234) #28	KCTD19 (ENSNVIG00000010210) #29	LRRC36 (ENSNVIG00000010163) #30	TPPP3 (ENSNVIG00000010145) #31	ZDHHC1 (ENSNVIG00000010126) #32	HSD11B2 (ENSNVIG00000010109) #33	ATP6V0D1 (ENSNVIG00000010093) #34	AGRP (ENSNVIG00000010084) #35	RIPOR1 (ENSNVIG00000009916) #36
Ferret	MODERN SPECIES	174	PDP2 (ENSMPUG00000019891)	CDH16 (ENSMPUG00000005284)	RRAD (ENSMPUG00000005296)	CIAO2B (ENSMPUG00000005303)	CES2 (ENSMPUG00000005332) #12	CES3 (ENSMPUG00000005350)	CBFB (ENSMPUG00000005362) #13	PHAF1 (ENSMPUG00000005369) #14	B3GNT9 (ENSMPUG00000019893) #15	TRADD (ENSMPUG00000005387) #16	FBXL8 (ENSMPUG00000005412)	HSF4 (ENSMPUG00000005418) #17	ENSMPUG00000005530 #18	MATCAP1 (ENSMPUG00000005537) #20	EXOC3L1 (ENSMPUG00000005549) #21	E2F4 (ENSMPUG00000005564) #22	ELMO3 (ENSMPUG00000005677) #23	ENSMPUG00000005910 #24	TMEM208 (ENSMPUG00000005954) #25	FHOD1 (ENSMPUG00000006014) #26	SLC9A5 (ENSMPUG00000006032) #27	PLEKHG4 (ENSMPUG00000006141) #28	KCTD19 (ENSMPUG00000006157) #29	LRRC36 (ENSMPUG00000006211) #30	TPPP3 (ENSMPUG00000006277) #31	ZDHHC1 (ENSMPUG00000006284) #32	HSD11B2 (ENSMPUG00000006293) #33	ATP6V0D1 (ENSMPUG00000006345) #34	AGRP (ENSMPUG00000006360) #35	RIPOR1 (ENSMPUG00000006380) #36	CTCF (ENSMPUG00000006401) #37
Canidae	ANCESTRAL SPECIES	11	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000154694.k.a	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Red fox	MODERN SPECIES	86	PDP2 (ENSVVUG00000011059)	CDH16 (ENSVVUG00000011064)	RRAD (ENSVVUG00000011080)	CIAO2B (ENSVVUG00000011091)	CES2 (ENSVVUG00000011116) #12	ENSVVUG00000011153	ENSVVUG00000011164 #13	PHAF1 (ENSVVUG00000011171) #14	B3GNT9 (ENSVVUG00000011177) #15	TRADD (ENSVVUG00000011183) #16	FBXL8 (ENSVVUG00000011188)	HSF4 (ENSVVUG00000011195) #17	ENSVVUG00000011543 #18	MATCAP1 (ENSVVUG00000011547) #20	EXOC3L1 (ENSVVUG00000011555) #21	E2F4 (ENSVVUG00000011569) #22	ELMO3 (ENSVVUG00000011584) #23	ENSVVUG00000011596 #24	TMEM208 (ENSVVUG00000011608) #25	SLC9A5 (ENSVVUG00000011891) #27	PLEKHG4 (ENSVVUG00000011993) #28	KCTD19 (ENSVVUG00000012031) #29	LRRC36 (ENSVVUG00000012071) #30	TPPP3 (ENSVVUG00000012076) #31	ZDHHC1 (ENSVVUG00000012083) #32	HSD11B2 (ENSVVUG00000012093) #33	ATP6V0D1 (ENSVVUG00000012104) #34	AGRP (ENSVVUG00000012120) #35	RIPOR1 (ENSVVUG00000012147) #36	CTCF (ENSVVUG00000012154) #37	CARMIL2 (ENSVVUG00000012192)
Canis_lupus	ANCESTRAL SPECIES	5	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000154694.k.a	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Dog	DUPLICATION
Dog	MODERN SPECIES	4	ENSCAFG00845009455	ENSCAFG00845009231	ENSCAFG00845009169	YTHDC1 (ENSCAFG00845009010)	ENSCAFG00845008866	ENSCAFG00845008806	ENSCAFG00845008764	TMPRSS11A (ENSCAFG00845008712)	ENSCAFG00845008657	ENSCAFG00845008566	ENSCAFG00845008485	GNRHR (ENSCAFG00845008435)	UBA6 (ENSCAFG00845007757)	STAP1 (ENSCAFG00845007408)	CENPC (ENSCAFG00845007271)	ENSCAFG00845007153 #22	EPHA5 (ENSCAFG00845006153)	TECRL (ENSCAFG00845005649)	ADGRL3 (ENSCAFG00845014364)	ENSCAFG00845014256	ENSCAFG00845014244	ENSCAFG00845014237	ENSCAFG00845014210	ENSCAFG00845014179	POLR2B (ENSCAFG00845014082)	NOA1 (ENSCAFG00845013997)	REST (ENSCAFG00845013968)	SPINK2 (ENSCAFG00845013914)	THEGL (ENSCAFG00845013867)	ENSCAFG00845013850	ARL9 (ENSCAFG00845013838)
Dog	MODERN SPECIES	33	PDP2 (ENSCAFG00845011036)	CDH16 (ENSCAFG00845010781)	RRAD (ENSCAFG00845010705)	CIAO2B (ENSCAFG00845010671)	CES2 (ENSCAFG00845010523) #12	ENSCAFG00845010462	CBFB (ENSCAFG00845010432) #13	PHAF1 (ENSCAFG00845010359) #14	B3GNT9 (ENSCAFG00845010321) #15	FBXL8 (ENSCAFG00845010281)	TRADD (ENSCAFG00845010243) #16	HSF4 (ENSCAFG00845010066) #17	HSF4 (ENSCAFG00845009966) #18	MATCAP1 (ENSCAFG00845009874) #20	EXOC3L1 (ENSCAFG00845009747) #21	ENSCAFG00845009673 #22	ELMO3 (ENSCAFG00845009511) #23	ENSCAFG00845009436 #24	TMEM208 (ENSCAFG00845009370) #25	FHOD1 (ENSCAFG00845009145) #26	SLC9A5 (ENSCAFG00845009040) #27	PLEKHG4 (ENSCAFG00845008847) #28	KCTD19 (ENSCAFG00845008661) #29	LRRC36 (ENSCAFG00845008572) #30	TPPP3 (ENSCAFG00845008424) #31	ZDHHC1 (ENSCAFG00845008324) #32	HSD11B2 (ENSCAFG00845008256) #33	ATP6V0D1 (ENSCAFG00845008188) #34	AGRP (ENSCAFG00845008104) #35	RIPOR1 (ENSCAFG00845007707) #36	CTCF (ENSCAFG00845007437) #37
Dingo	DUPLICATION
Dingo	MODERN SPECIES	2	ENSCAFG00020027102	ENSCAFG00020027103	ENSCAFG00020027107	ENSCAFG00020027109	YTHDC1 (ENSCAFG00020027112)	TMPRSS11E (ENSCAFG00020027116)	ENSCAFG00020027117	TMPRSS11F (ENSCAFG00020027118)	ENSCAFG00020027120	TMPRSS11A (ENSCAFG00020027122)	TMPRSS11D (ENSCAFG00020027124)	ENSCAFG00020027128	GNRHR (ENSCAFG00020027129)	UBA6 (ENSCAFG00020027143)	CENPC (ENSCAFG00020027175)	ENSCAFG00020027180 #22	EPHA5 (ENSCAFG00020027199)	TECRL (ENSCAFG00020027208)	ADGRL3 (ENSCAFG00020027216)	ENSCAFG00020027309	ENSCAFG00020027310	ENSCAFG00020027312	ENSCAFG00020027313	ENSCAFG00020027315	IGFBP7 (ENSCAFG00020027316)	POLR2B (ENSCAFG00020027317)	NOA1 (ENSCAFG00020027319)	ENSCAFG00020027320	ENSCAFG00020027322	ENSCAFG00020027323	THEGL (ENSCAFG00020027324)
Dingo	MODERN SPECIES	373	CA7 (ENSCAFG00020017940)	CDH16 (ENSCAFG00020017962)	RRAD (ENSCAFG00020018006)	CIAO2B (ENSCAFG00020018022)	CES2 (ENSCAFG00020018024) #12	ENSCAFG00020018031	CBFB (ENSCAFG00020018039) #13	PHAF1 (ENSCAFG00020018043) #14	B3GNT9 (ENSCAFG00020018052) #15	TRADD (ENSCAFG00020018054) #16	FBXL8 (ENSCAFG00020018057)	HSF4 (ENSCAFG00020018058) #17	ENSCAFG00020018066 #18	MATCAP1 (ENSCAFG00020018068) #20	EXOC3L1 (ENSCAFG00020018073) #21	ENSCAFG00020018080 #22	ELMO3 (ENSCAFG00020018084) #23	ENSCAFG00020018090 #24	TMEM208 (ENSCAFG00020018093) #25	FHOD1 (ENSCAFG00020018094) #26	SLC9A5 (ENSCAFG00020018099) #27	ENSCAFG00020018116 #28	ENSCAFG00020018122 #28	KCTD19 (ENSCAFG00020018130) #29	LRRC36 (ENSCAFG00020018145) #30	TPPP3 (ENSCAFG00020018161) #31	ZDHHC1 (ENSCAFG00020018166) #32	HSD11B2 (ENSCAFG00020018177) #33	ATP6V0D1 (ENSCAFG00020018180) #34	AGRP (ENSCAFG00020018182) #35	RIPOR1 (ENSCAFG00020018185) #36
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000164375	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Equus	ANCESTRAL SPECIES	20	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00940000161003
Donkey	MODERN SPECIES	20	PDP2 (ENSEASG00005025884)	CDH16 (ENSEASG00005010892)	RRAD (ENSEASG00005010896)	CIAO2B (ENSEASG00005031727)	CES2 (ENSEASG00005010903) #12	CES3 (ENSEASG00005010928)	CBFB (ENSEASG00005010936) #13	PHAF1 (ENSEASG00005010953) #14	B3GNT9 (ENSEASG00005034023) #15	TRADD (ENSEASG00005011002) #16	FBXL8 (ENSEASG00005034607)	HSF4 (ENSEASG00005011004) #17	ENSEASG00005011062 #18	MATCAP1 (ENSEASG00005011064) #20	EXOC3L1 (ENSEASG00005011071) #21	E2F4 (ENSEASG00005011078) #22	ELMO3 (ENSEASG00005011163) #23	TMEM208 (ENSEASG00005012536) #25	FHOD1 (ENSEASG00005012549) #26	SLC9A5 (ENSEASG00005012688) #27	PLEKHG4 (ENSEASG00005012694) #28	KCTD19 (ENSEASG00005012701) #29	LRRC36 (ENSEASG00005012707) #30	TPPP3 (ENSEASG00005028584) #31	ZDHHC1 (ENSEASG00005012723) #32	HSD11B2 (ENSEASG00005012736) #33	ATP6V0D1 (ENSEASG00005012742) #34	AGRP (ENSEASG00005012748) #35	RIPOR1 (ENSEASG00005012769) #36	CTCF (ENSEASG00005012799) #37	CARMIL2 (ENSEASG00005012824)
Horse	MODERN SPECIES	22	CA7 (ENSECAG00000024943)	PDP2 (ENSECAG00000006359)	CDH16 (ENSECAG00000009969)	RRAD (ENSECAG00000006674)	CES2 (ENSECAG00000012061)	CIAO2B (ENSECAG00000010902)	CES3 (ENSECAG00000010334)	CBFB (ENSECAG00000014879) #13	PHAF1 (ENSECAG00000022219) #14	B3GNT9 (ENSECAG00000006409) #15	TRADD (ENSECAG00000013754) #16	FBXL8 (ENSECAG00000034017)	HSF4 (ENSECAG00000016708) #17	MATCAP1 (ENSECAG00000024529) #20	EXOC3L1 (ENSECAG00000001268) #21	E2F4 (ENSECAG00000015595) #22	ELMO3 (ENSECAG00000006824) #23	FHOD1 (ENSECAG00000013595) #26	SLC9A5 (ENSECAG00000020279) #27	KCTD19 (ENSECAG00000014064) #29	PLEKHG4 (ENSECAG00000006999) #28	LRRC36 (ENSECAG00000021516) #30	TPPP3 (ENSECAG00000007133) #31	ZDHHC1 (ENSECAG00000010730) #32	HSD11B2 (ENSECAG00000014152) #33	ATP6V0D1 (ENSECAG00000015817) #34	RIPOR1 (ENSECAG00000018681) #36	AGRP (ENSECAG00000016828) #35	CTCF (ENSECAG00000015924) #37	CARMIL2 (ENSECAG00000010729)	ACD (ENSECAG00000020293)
Chiroptera	ANCESTRAL SPECIES	21	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000164375	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Megabat	MODERN SPECIES	2556															EXOC3L1 (ENSPVAG00000005273) #21	E2F4 (ENSPVAG00000005274) #22	ELMO3 (ENSPVAG00000005275) #23	ENSPVAG00000005276 #24	TMEM208 (ENSPVAG00000005277) #25	FHOD1 (ENSPVAG00000005280) #26	SLC9A5 (ENSPVAG00000005281) #27
Microchiroptera	ANCESTRAL SPECIES	12	ENSGT00550000074901	ENSGT00940000159757	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Greater horseshoe bat	MODERN SPECIES	6	TERB1 (ENSRFEG00010011648)	NAE1 (ENSRFEG00010011905)	CA7 (ENSRFEG00010012260)	CDH16 (ENSRFEG00010012368)	RRAD (ENSRFEG00010012702)	CIAO2B (ENSRFEG00010012765)	CBFB (ENSRFEG00010012858) #13	PHAF1 (ENSRFEG00010012954) #14	B3GNT9 (ENSRFEG00010013003) #15	TRADD (ENSRFEG00010013012) #16	FBXL8 (ENSRFEG00010013130)	HSF4 (ENSRFEG00010013178) #17	NOL3 (ENSRFEG00010013567) #18	MATCAP1 (ENSRFEG00010013678) #20	EXOC3L1 (ENSRFEG00010013737) #21	E2F4 (ENSRFEG00010013945) #22	ELMO3 (ENSRFEG00010014029) #23	ENSRFEG00010014143 #24	ENSRFEG00010014162 #24	TMEM208 (ENSRFEG00010014189) #25	FHOD1 (ENSRFEG00010014292) #26	SLC9A5 (ENSRFEG00010014393) #27	ENSRFEG00010014828 #28	KCTD19 (ENSRFEG00010014975) #29	LRRC36 (ENSRFEG00010015268) #30	TPPP3 (ENSRFEG00010015768) #31	ZDHHC1 (ENSRFEG00010015816) #32	HSD11B2 (ENSRFEG00010015871) #33	ATP6V0D1 (ENSRFEG00010015904) #34	AGRP (ENSRFEG00010015961) #35	RIPOR1 (ENSRFEG00010016037) #36
Microbat	MODERN SPECIES	1211	NAE1 (ENSMLUG00000012976)	CA7 (ENSMLUG00000012984)	PDP2 (ENSMLUG00000014958)	CDH16 (ENSMLUG00000013705)	RRAD (ENSMLUG00000013700)	CIAO2B (ENSMLUG00000014953)	CBFB (ENSMLUG00000010999) #13	ENSMLUG00000011012 #14	B3GNT9 (ENSMLUG00000023514) #15	TRADD (ENSMLUG00000011054) #16	FBXL8 (ENSMLUG00000011063)	HSF4 (ENSMLUG00000011083) #17	ENSMLUG00000011138 #18	MATCAP1 (ENSMLUG00000011150) #20	EXOC3L1 (ENSMLUG00000001121) #21	E2F4 (ENSMLUG00000023162) #22	ELMO3 (ENSMLUG00000001134) #23	ENSMLUG00000001143 #24	TMEM208 (ENSMLUG00000001149) #25	FHOD1 (ENSMLUG00000001154) #26	SLC9A5 (ENSMLUG00000001170) #27	PLEKHG4 (ENSMLUG00000001181) #28	KCTD19 (ENSMLUG00000001193) #29	LRRC36 (ENSMLUG00000001203) #30	ENSMLUG00000026149	TPPP3 (ENSMLUG00000005171) #31	ZDHHC1 (ENSMLUG00000005174) #32	HSD11B2 (ENSMLUG00000024893) #33	ATP6V0D1 (ENSMLUG00000005187) #34	AGRP (ENSMLUG00000005196) #35	RIPOR1 (ENSMLUG00000005201) #36
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Suina	ANCESTRAL SPECIES	2	ENSGT00940000159757	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Pig	MODERN SPECIES	14	TERB1 (ENSSSCG00000035639)	CA7 (ENSSSCG00000038785)	PDP2 (ENSSSCG00000036067)	CDH16 (ENSSSCG00000022721)	RRAD (ENSSSCG00000036060)	CIAO2B (ENSSSCG00000033027)	CES3 (ENSSSCG00000024476)	CBFB (ENSSSCG00000033811) #13	PHAF1 (ENSSSCG00000040749) #14	B3GNT9 (ENSSSCG00000040139) #15	TRADD (ENSSSCG00000036321) #16	FBXL8 (ENSSSCG00000002793)	HSF4 (ENSSSCG00000040125) #17	MATCAP1 (ENSSSCG00000032443) #20	EXOC3L1 (ENSSSCG00000002788) #21	E2F4 (ENSSSCG00000002787) #22	ELMO3 (ENSSSCG00000002786) #23	ENSSSCG00000031199 #24	ENSSSCG00000002790 #25	FHOD1 (ENSSSCG00000026116) #26	SLC9A5 (ENSSSCG00000002783) #27	PLEKHG4 (ENSSSCG00000002782) #28	KCTD19 (ENSSSCG00000002781) #29	LRRC36 (ENSSSCG00000002779) #30	TPPP3 (ENSSSCG00000035983) #31	ZDHHC1 (ENSSSCG00000002778) #32	HSD11B2 (ENSSSCG00000002777) #33	ATP6V0D1 (ENSSSCG00000002776) #34	RIPOR1 (ENSSSCG00000002774) #36	AGRP (ENSSSCG00000002775) #35	CTCF (ENSSSCG00000024253) #37
Chacoan peccary	MODERN SPECIES	106	PDP2 (ENSCWAG00000019805)	CDH16 (ENSCWAG00000019851)	RRAD (ENSCWAG00000020265)	CIAO2B (ENSCWAG00000020272)	CES3 (ENSCWAG00000020290)	ENSCWAG00000020325	CBFB (ENSCWAG00000020337) #13	PHAF1 (ENSCWAG00000020358) #14	B3GNT9 (ENSCWAG00000020367) #15	TRADD (ENSCWAG00000020373) #16	FBXL8 (ENSCWAG00000020383)	HSF4 (ENSCWAG00000020397) #17	NOL3 (ENSCWAG00000020427) #18	MATCAP1 (ENSCWAG00000020443) #20	EXOC3L1 (ENSCWAG00000020467) #21	E2F4 (ENSCWAG00000020485) #22	ELMO3 (ENSCWAG00000020517) #23	ENSCWAG00000003654 #24	TMEM208 (ENSCWAG00000003685) #25	FHOD1 (ENSCWAG00000003717) #26	SLC9A5 (ENSCWAG00000003762) #27	PLEKHG4 (ENSCWAG00000003836) #28	KCTD19 (ENSCWAG00000003973) #29	LRRC36 (ENSCWAG00000004058) #30	ENSCWAG00000004252	TPPP3 (ENSCWAG00000004283) #31	ZDHHC1 (ENSCWAG00000004315) #32	HSD11B2 (ENSCWAG00000004393) #33	ATP6V0D1 (ENSCWAG00000004436) #34	AGRP (ENSCWAG00000004461) #35	RIPOR1 (ENSCWAG00000004502) #36
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Camelidae	ANCESTRAL SPECIES	9	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT01030000234613.a.b #21	ENSGT00390000004417.b #20	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Arabian camel	MODERN SPECIES	35	CDH16 (ENSCDRG00005007160)	RRAD (ENSCDRG00005007840)	CIAO2B (ENSCDRG00005007905)	CES2 (ENSCDRG00005007948) #12	CES3 (ENSCDRG00005008158)	CES4A (ENSCDRG00005008394)	CBFB (ENSCDRG00005008908) #13	PHAF1 (ENSCDRG00005009104) #14	B3GNT9 (ENSCDRG00005009199) #15	TRADD (ENSCDRG00005009217) #16	FBXL8 (ENSCDRG00005009311)	HSF4 (ENSCDRG00005009366) #17	ENSCDRG00005009628 #18	EXOC3L1 (ENSCDRG00005009698) #21	MATCAP1 (ENSCDRG00005009884) #20	E2F4 (ENSCDRG00005009938) #22	ELMO3 (ENSCDRG00005010079) #23	ENSCDRG00005010406 #24	ENSCDRG00005010459	ENSCDRG00005010491 #25	FHOD1 (ENSCDRG00005010592) #26	ENSCDRG00005010675 #26	SLC9A5 (ENSCDRG00005010730) #27	PLEKHG4 (ENSCDRG00005010841) #28	KCTD19 (ENSCDRG00005011106) #29	LRRC36 (ENSCDRG00005011255) #30	TPPP3 (ENSCDRG00005011501) #31	ZDHHC1 (ENSCDRG00005011521) #32	HSD11B2 (ENSCDRG00005011575) #33	ATP6V0D1 (ENSCDRG00005011601) #34	AGRP (ENSCDRG00005011760) #35
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Cetacea	ANCESTRAL SPECIES	6	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a.n #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	7	SUPV3L1 (ENSBMSG00010022325)	HKDC1 (ENSBMSG00010022316)	HK1 (ENSBMSG00010022300)	TACR2 (ENSBMSG00010022290)	TSPAN15 (ENSBMSG00010022282)	NEUROG3 (ENSBMSG00010022279)	FAM241B (ENSBMSG00010022278)	COL13A1 (ENSBMSG00010018272)	MACROH2A2 (ENSBMSG00010017113)	AIFM2 (ENSBMSG00010017088)	TYSND1 (ENSBMSG00010017063)	SAR1A (ENSBMSG00010017041)	ENSBMSG00010017012	NPFFR1 (ENSBMSG00010016996)	LRRC20 (ENSBMSG00010016966)	ENSBMSG00010016948 #22	EIF4EBP2 (ENSBMSG00010016927)	NODAL (ENSBMSG00010016907)	PALD1 (ENSBMSG00010016880)	PRF1 (ENSBMSG00010016858)	ADAMTS14 (ENSBMSG00010016763)	TBATA (ENSBMSG00010016695)	SGPL1 (ENSBMSG00010016639)	UNC5B (ENSBMSG00010016561)	SLC29A3 (ENSBMSG00010016523)	VSIR (ENSBMSG00010016464)	CDH23 (ENSBMSG00010014850)	PSAP (ENSBMSG00010014455)	CHST3 (ENSBMSG00010014411)	ENSBMSG00010014391	SPOCK2 (ENSBMSG00010014327)
Blue whale	MODERN SPECIES	10	ENSBMSG00010015711	PDP2 (ENSBMSG00010015722)	CDH16 (ENSBMSG00010015858)	RRAD (ENSBMSG00010016627)	CIAO2B (ENSBMSG00010016650)	CES2 (ENSBMSG00010016703) #12	CBFB (ENSBMSG00010016805) #13	ENSBMSG00010016852 #14	B3GNT9 (ENSBMSG00010016876) #15	TRADD (ENSBMSG00010016899) #16	FBXL8 (ENSBMSG00010016923)	HSF4 (ENSBMSG00010016951) #17	NOL3 (ENSBMSG00010016979) #18	MATCAP1 (ENSBMSG00010017022) #20	EXOC3L1 (ENSBMSG00010017075) #21	ENSBMSG00010017137 #22	ELMO3 (ENSBMSG00010017180) #23	ENSBMSG00010017277 #24	TMEM208 (ENSBMSG00010017359) #25	FHOD1 (ENSBMSG00010017401) #26	SLC9A5 (ENSBMSG00010017437) #27	KCTD19 (ENSBMSG00010017657) #29	LRRC36 (ENSBMSG00010017738) #30	TPPP3 (ENSBMSG00010017825) #31	ZDHHC1 (ENSBMSG00010017851) #32	HSD11B2 (ENSBMSG00010017905) #33	ATP6V0D1 (ENSBMSG00010017928) #34	AGRP (ENSBMSG00010017977) #35	RIPOR1 (ENSBMSG00010018027) #36	CTCF (ENSBMSG00010018230) #37	CARMIL2 (ENSBMSG00010018294)
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.q #12	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a.n #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.q #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a.n #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Dolphin	MODERN SPECIES	1310	NAE1 (ENSTTRG00000010124)	CA7 (ENSTTRG00000010154)	PDP2 (ENSTTRG00000010159)	CDH16 (ENSTTRG00000010162)	RRAD (ENSTTRG00000010173)	CIAO2B (ENSTTRG00000010181)	ENSTTRG00000010185	CBFB (ENSTTRG00000010200) #13	PHAF1 (ENSTTRG00000010207) #14	TRADD (ENSTTRG00000010223) #16	FBXL8 (ENSTTRG00000010233)	HSF4 (ENSTTRG00000010241) #17	ENSTTRG00000010251 #18	MATCAP1 (ENSTTRG00000010254) #20	EXOC3L1 (ENSTTRG00000010260) #21	E2F4 (ENSTTRG00000010268) #22	ELMO3 (ENSTTRG00000010275) #23	ENSTTRG00000010287 #24
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.q #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a.n #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793.q #12	ENSGT00940000155200	ENSGT00940000153314.a.a	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a.n #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Beluga whale	MODERN SPECIES	12	RRAD (ENSDLEG00000002898)	FAM96B (ENSDLEG00000002890)	CES2 (ENSDLEG00000002869) #12	ENSDLEG00000002860	ENSDLEG00000002849	ENSDLEG00000002836	PHAF1 (ENSDLEG00000002707) #14	B3GNT9 (ENSDLEG00000002671) #15	TRADD (ENSDLEG00000002663) #16	ENSDLEG00000002626	FBXL8 (ENSDLEG00000002619)	HSF4 (ENSDLEG00000002590) #17	NOL3 (ENSDLEG00000002571) #18	KIAA0895L (ENSDLEG00000002558) #20	EXOC3L1 (ENSDLEG00000002535) #21	E2F4 (ENSDLEG00000002500) #22	ELMO3 (ENSDLEG00000002444) #23	ENSDLEG00000002413 #24	TMEM208 (ENSDLEG00000002382) #25	FHOD1 (ENSDLEG00000001708) #26	SLC9A5 (ENSDLEG00000001295) #27	ENSDLEG00000001253 #28	ENSDLEG00000001229 #28	KCTD19 (ENSDLEG00000001198) #29	LRRC36 (ENSDLEG00000001147) #30	TPPP3 (ENSDLEG00000001125) #31	ZDHHC1 (ENSDLEG00000001103) #32	HSD11B2 (ENSDLEG00000001092) #33	ATP6V0D1 (ENSDLEG00000001081) #34	AGRP (ENSDLEG00000001071) #35	RIPOR1 (ENSDLEG00000000973) #36
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	311	SUPV3L1 (ENSMMNG00015018179)	HKDC1 (ENSMMNG00015018235)	HK1 (ENSMMNG00015018338)	TACR2 (ENSMMNG00015018482)	TSPAN15 (ENSMMNG00015018513)	NEUROG3 (ENSMMNG00015018559)	FAM241B (ENSMMNG00015018581)	COL13A1 (ENSMMNG00015019392)	MACROH2A2 (ENSMMNG00015021163)	AIFM2 (ENSMMNG00015021184)	TYSND1 (ENSMMNG00015021209)	SAR1A (ENSMMNG00015021225)	PPA1 (ENSMMNG00015021247)	NPFFR1 (ENSMMNG00015021258)	LRRC20 (ENSMMNG00015021275)	ENSMMNG00015021284 #22	EIF4EBP2 (ENSMMNG00015021294)	NODAL (ENSMMNG00015021300)	PALD1 (ENSMMNG00015021314)	PRF1 (ENSMMNG00015021328)	ADAMTS14 (ENSMMNG00015021357)	TBATA (ENSMMNG00015021388)	SGPL1 (ENSMMNG00015021410)	ENSMMNG00015021426	UNC5B (ENSMMNG00015021439)	SLC29A3 (ENSMMNG00015021469)	CDH23 (ENSMMNG00015021504)	C10orf105 (ENSMMNG00015021533)	VSIR (ENSMMNG00015021540)	PSAP (ENSMMNG00015021549)	ENSMMNG00015021560
Narwhal	MODERN SPECIES	296	CDH16 (ENSMMNG00015003293)	RRAD (ENSMMNG00015003240)	CIAO2B (ENSMMNG00015003223)	CES2 (ENSMMNG00015003204) #12	ENSMMNG00015003177	ENSMMNG00015003160	CBFB (ENSMMNG00015003148) #13	PHAF1 (ENSMMNG00015003125) #14	B3GNT9 (ENSMMNG00015003108) #15	TRADD (ENSMMNG00015003080) #16	FBXL8 (ENSMMNG00015003059)	HSF4 (ENSMMNG00015003012) #17	ENSMMNG00015002974 #18	MATCAP1 (ENSMMNG00015002942) #20	EXOC3L1 (ENSMMNG00015002888) #21	ENSMMNG00015002857 #22	ELMO3 (ENSMMNG00015002794) #23	ENSMMNG00015002763 #24	ENSMMNG00015002751	TMEM208 (ENSMMNG00015002742) #25	FHOD1 (ENSMMNG00015002710) #26	SLC9A5 (ENSMMNG00015002666) #27	PLEKHG4 (ENSMMNG00015002609) #28	KCTD19 (ENSMMNG00015002571) #29	LRRC36 (ENSMMNG00015002487) #30	TPPP3 (ENSMMNG00015002443) #31	ZDHHC1 (ENSMMNG00015002416) #32	HSD11B2 (ENSMMNG00015002384) #33	ATP6V0D1 (ENSMMNG00015002352) #34	AGRP (ENSMMNG00015002325) #35	RIPOR1 (ENSMMNG00015002214) #36
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	7	SUPV3L1 (ENSPSNG00000019123)	HKDC1 (ENSPSNG00000019172)	HK1 (ENSPSNG00000019292)	TACR2 (ENSPSNG00000019582)	TSPAN15 (ENSPSNG00000019618)	NEUROG3 (ENSPSNG00000019648)	FAM241B (ENSPSNG00000019661)	COL13A1 (ENSPSNG00000019849)	MACROH2A2 (ENSPSNG00000020131)	AIFM2 (ENSPSNG00000020177)	TYSND1 (ENSPSNG00000020220)	SAR1A (ENSPSNG00000020248)	PPA1 (ENSPSNG00000020295)	NPFFR1 (ENSPSNG00000020327)	LRRC20 (ENSPSNG00000020377)	ENSPSNG00000020439 #22	ENSPSNG00000020464	NODAL (ENSPSNG00000020491)	PALD1 (ENSPSNG00000020534)	PRF1 (ENSPSNG00000020654)	ADAMTS14 (ENSPSNG00000020694)	TBATA (ENSPSNG00000020841)	SGPL1 (ENSPSNG00000020906)	ENSPSNG00000020953	UNC5B (ENSPSNG00000021006)	SLC29A3 (ENSPSNG00000021104)	CDH23 (ENSPSNG00000009904)	C10orf105 (ENSPSNG00000011646)	VSIR (ENSPSNG00000011665)	PSAP (ENSPSNG00000011730)	ENSPSNG00000011842
Vaquita	MODERN SPECIES	10	NAE1 (ENSPSNG00000016216)	CA7 (ENSPSNG00000016396)	PDP2 (ENSPSNG00000016552)	CDH16 (ENSPSNG00000016664)	RRAD (ENSPSNG00000017497)	CIAO2B (ENSPSNG00000017545)	CES2 (ENSPSNG00000017596) #12	CBFB (ENSPSNG00000017662) #13	PHAF1 (ENSPSNG00000017735) #14	B3GNT9 (ENSPSNG00000017784) #15	FBXL8 (ENSPSNG00000017855)	HSF4 (ENSPSNG00000017904) #17	ENSPSNG00000017959 #18	MATCAP1 (ENSPSNG00000018018) #20	EXOC3L1 (ENSPSNG00000018065) #21	ENSPSNG00000018189 #22	ELMO3 (ENSPSNG00000018256) #23	ENSPSNG00000018855 #24	ENSPSNG00000018895	TMEM208 (ENSPSNG00000018943) #25	FHOD1 (ENSPSNG00000019017) #26	SLC9A5 (ENSPSNG00000019084) #27	PLEKHG4 (ENSPSNG00000019161) #28	KCTD19 (ENSPSNG00000019323) #29	LRRC36 (ENSPSNG00000019384) #30	ENSPSNG00000019623 #31	ZDHHC1 (ENSPSNG00000019669) #32	HSD11B2 (ENSPSNG00000019771) #33	ATP6V0D1 (ENSPSNG00000019804) #34	AGRP (ENSPSNG00000019863) #35	RIPOR1 (ENSPSNG00000019920) #36
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	12	VPS26A (ENSPCTG00005006530)	SUPV3L1 (ENSPCTG00005006597)	HKDC1 (ENSPCTG00005006659)	TACR2 (ENSPCTG00005006726)	ENSPCTG00005006757	NEUROG3 (ENSPCTG00005006773)	FAM241B (ENSPCTG00005006794)	COL13A1 (ENSPCTG00005007462)	MACROH2A2 (ENSPCTG00005014364)	AIFM2 (ENSPCTG00005014407)	TYSND1 (ENSPCTG00005014466)	SAR1A (ENSPCTG00005014528)	PPA1 (ENSPCTG00005014580)	ENSPCTG00005014625	ENSPCTG00005014776	ENSPCTG00005014824 #22	EIF4EBP2 (ENSPCTG00005014870)	NODAL (ENSPCTG00005014924)	PALD1 (ENSPCTG00005014988)	PRF1 (ENSPCTG00005015153)	ADAMTS14 (ENSPCTG00005015211)	SGPL1 (ENSPCTG00005015728)	PCBD1 (ENSPCTG00005015772)	SLC29A3 (ENSPCTG00005015832)	ENSPCTG00005016034	C20H10orf105 (ENSPCTG00005016335)	VSIR (ENSPCTG00005016352)	CHST3 (ENSPCTG00005016377)	ENSPCTG00005016423	ASCC1 (ENSPCTG00005016464)	ANAPC16 (ENSPCTG00005016583)
Sperm whale	MODERN SPECIES	922										TRADD (ENSPCTG00005015903) #16	FBXL8 (ENSPCTG00005015852)	HSF4 (ENSPCTG00005015491) #17	ENSPCTG00005015399 #18	KIAA0895L (ENSPCTG00005015241) #20	EXOC3L1 (ENSPCTG00005015029) #21	E2F4 (ENSPCTG00005014982) #22	ELMO3 (ENSPCTG00005014302) #23	ENSPCTG00005014220 #24	ENSPCTG00005014178	TMEM208 (ENSPCTG00005014062) #25	FHOD1 (ENSPCTG00005013971) #26
Pecora	ANCESTRAL SPECIES	4	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Yarkand deer	MODERN SPECIES	27	PDP2 (ENSCHYG00000022241)	CDH16 (ENSCHYG00000022298)	RRAD (ENSCHYG00000022736)	ENSCHYG00000022775	CES2 (ENSCHYG00000022832) #12	CES3 (ENSCHYG00000022898)	CES4A (ENSCHYG00000023100)	CBFB (ENSCHYG00000023398) #13	PHAF1 (ENSCHYG00000023443) #14	B3GNT9 (ENSCHYG00000023536) #15	TRADD (ENSCHYG00000023549) #16	ENSCHYG00000023612 #17	NOL3 (ENSCHYG00000023759) #18	MATCAP1 (ENSCHYG00000023823) #20	EXOC3L1 (ENSCHYG00000023914) #21	E2F4 (ENSCHYG00000023962) #22	ELMO3 (ENSCHYG00000024035) #23	ENSCHYG00000024305 #24	TMEM208 (ENSCHYG00000024345) #25	FHOD1 (ENSCHYG00000024493) #26	SLC9A5 (ENSCHYG00000024982) #27	ENSCHYG00000008855 #28	KCTD19 (ENSCHYG00000009258) #29	LRRC36 (ENSCHYG00000009424) #30	ENSCHYG00000009661	TPPP3 (ENSCHYG00000009692) #31	ZDHHC1 (ENSCHYG00000009775) #32	HSD11B2 (ENSCHYG00000009995) #33	ATP6V0D1 (ENSCHYG00000010102) #34	AGRP (ENSCHYG00000010393) #35	RIPOR1 (ENSCHYG00000010451) #36
Percora_a	ANCESTRAL SPECIES	4	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Siberian musk deer	MODERN SPECIES	125	CDH16 (ENSMMSG00000003008)	RRAD (ENSMMSG00000002919)	CIAO2B (ENSMMSG00000002906)	CES2 (ENSMMSG00000002881) #12	CES3 (ENSMMSG00000002817)	CES4A (ENSMMSG00000002458)	CBFB (ENSMMSG00000002381) #13	PHAF1 (ENSMMSG00000002333) #14	B3GNT9 (ENSMMSG00000002307) #15	TRADD (ENSMMSG00000002296) #16	FBXL8 (ENSMMSG00000002277)	HSF4 (ENSMMSG00000002260) #17	NOL3 (ENSMMSG00000002238) #18	MATCAP1 (ENSMMSG00000002222) #20	EXOC3L1 (ENSMMSG00000002185) #21	E2F4 (ENSMMSG00000002147) #22	ELMO3 (ENSMMSG00000002100) #23	ENSMMSG00000002071 #24	ENSMMSG00000002065	TMEM208 (ENSMMSG00000002038) #25	FHOD1 (ENSMMSG00000002016) #26	SLC9A5 (ENSMMSG00000001982) #27	PLEKHG4 (ENSMMSG00000001910) #28	KCTD19 (ENSMMSG00000001864) #29	LRRC36 (ENSMMSG00000001751) #30	TPPP3 (ENSMMSG00000001723) #31	ZDHHC1 (ENSMMSG00000001705) #32	HSD11B2 (ENSMMSG00000001687) #33	ATP6V0D1 (ENSMMSG00000001667) #34	AGRP (ENSMMSG00000001658) #35	RIPOR1 (ENSMMSG00000001629) #36
Bovidae	ANCESTRAL SPECIES	4	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Bovinae	ANCESTRAL SPECIES	3	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36
Bos	ANCESTRAL SPECIES	4	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637.p #24	ENSGT00900000143253	ENSGT00940000160637.o #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35
Bos_a	ANCESTRAL SPECIES	22	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637.p #24	ENSGT00900000143253	ENSGT00940000160637.o #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29
Domestic yak	MODERN SPECIES	12	CDH16 (ENSBGRG00000026897)	RRAD (ENSBGRG00000026896)	ENSBGRG00000026895	CES2 (ENSBGRG00000026894) #12	CES3 (ENSBGRG00000026893)	CES4A (ENSBGRG00000026891)	CBFB (ENSBGRG00000026888) #13	PHAF1 (ENSBGRG00000026886) #14	B3GNT9 (ENSBGRG00000026884) #15	TRADD (ENSBGRG00000026883) #16	FBXL8 (ENSBGRG00000026881)	HSF4 (ENSBGRG00000026879) #17	NOL3 (ENSBGRG00000026877) #18	MATCAP1 (ENSBGRG00000026876) #20	EXOC3L1 (ENSBGRG00000026874) #21	E2F4 (ENSBGRG00000026873) #22	ELMO3 (ENSBGRG00000026869) #23	ENSBGRG00000026868 #24	ENSBGRG00000026867 #24	TMEM208 (ENSBGRG00000026865) #25	ENSBGRG00000026861 #26	SLC9A5 (ENSBGRG00000026860) #27	PLEKHG4 (ENSBGRG00000026856) #28	KCTD19 (ENSBGRG00000026853) #29	ENSBGRG00000026851	LRRC36 (ENSBGRG00000026835) #30	TPPP3 (ENSBGRG00000026802) #31	ZDHHC1 (ENSBGRG00000026787) #32	HSD11B2 (ENSBGRG00000026764) #33	ATP6V0D1 (ENSBGRG00000026746) #34	AGRP (ENSBGRG00000026735) #35
Wild yak	MODERN SPECIES	818	CDH16 (ENSBMUG00000004891)	RRAD (ENSBMUG00000004672)	ENSBMUG00000004656	CES2 (ENSBMUG00000004631) #12	CES3 (ENSBMUG00000004603)	CES4A (ENSBMUG00000004549)	ENSBMUG00000004501 #13	PHAF1 (ENSBMUG00000004491) #14	B3GNT9 (ENSBMUG00000004470) #15	TRADD (ENSBMUG00000004465) #16	FBXL8 (ENSBMUG00000004457)	HSF4 (ENSBMUG00000004436) #17	ENSBMUG00000004421 #18	MATCAP1 (ENSBMUG00000004402) #20	EXOC3L1 (ENSBMUG00000004386) #21	E2F4 (ENSBMUG00000004337) #22	ELMO3 (ENSBMUG00000004292) #23	ENSBMUG00000004260 #24	ENSBMUG00000004246	TMEM208 (ENSBMUG00000004238) #25	FHOD1 (ENSBMUG00000004193) #26	ENSBMUG00000004095 #26	SLC9A5 (ENSBMUG00000004079) #27	PLEKHG4 (ENSBMUG00000004054) #28	KCTD19 (ENSBMUG00000003932) #29	ENSBMUG00000003916	LRRC36 (ENSBMUG00000003891) #30	TPPP3 (ENSBMUG00000003823) #31	ZDHHC1 (ENSBMUG00000003794) #32	HSD11B2 (ENSBMUG00000003730) #33	ATP6V0D1 (ENSBMUG00000003696) #34
Bos_b	ANCESTRAL SPECIES		ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637.p #24	ENSGT00940000160637.o #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00940000156218.b	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35
Cow	MODERN SPECIES	9	CDH16 (ENSBTAG00000009585)	RRAD (ENSBTAG00000013929)	CIAO2B (ENSBTAG00000013931)	CES2 (ENSBTAG00000005093) #12	CES3 (ENSBTAG00000040413)	CES4A (ENSBTAG00000038325)	CBFB (ENSBTAG00000016103) #13	PHAF1 (ENSBTAG00000005058) #14	B3GNT9 (ENSBTAG00000049665) #15	TRADD (ENSBTAG00000012642) #16	FBXL8 (ENSBTAG00000023632)	HSF4 (ENSBTAG00000003514) #17	NOL3 (ENSBTAG00000003519) #18	MATCAP1 (ENSBTAG00000003521) #20	EXOC3L1 (ENSBTAG00000012035) #21	E2F4 (ENSBTAG00000012063) #22	ELMO3 (ENSBTAG00000001286) #23	ENSBTAG00000001287 #24	TMEM208 (ENSBTAG00000002327) #25	FHOD1 (ENSBTAG00000032427) #26	SLC9A5 (ENSBTAG00000039190) #27	PLEKHG4 (ENSBTAG00000021570) #28	KCTD19 (ENSBTAG00000032396) #29	LRRC36 (ENSBTAG00000001838) #30	ENSBTAG00000046690	TPPP3 (ENSBTAG00000019822) #31	ZDHHC1 (ENSBTAG00000038134) #32	HSD11B2 (ENSBTAG00000005685) #33	ATP6V0D1 (ENSBTAG00000014553) #34	AGRP (ENSBTAG00000014556) #35	RIPOR1 (ENSBTAG00000008860) #36
Hybrid Bos Indicus	MODERN SPECIES	9	CDH16 (ENSBIXG00005020523)	RRAD (ENSBIXG00005020587)	CIAO2B (ENSBIXG00005003480)	CES2 (ENSBIXG00005020621) #12	CES3 (ENSBIXG00005003507)	CES4A (ENSBIXG00005020830)	CBFB (ENSBIXG00005003530) #13	PHAF1 (ENSBIXG00005020907) #14	B3GNT9 (ENSBIXG00005005675) #15	TRADD (ENSBIXG00005020967) #16	FBXL8 (ENSBIXG00005020996)	HSF4 (ENSBIXG00005021067) #17	ENSBIXG00005021092 #18	MATCAP1 (ENSBIXG00005021118) #20	EXOC3L1 (ENSBIXG00005005746) #21	E2F4 (ENSBIXG00005021168) #22	ELMO3 (ENSBIXG00005021218) #23	ENSBIXG00005021263 #24	TMEM208 (ENSBIXG00005021309) #25	FHOD1 (ENSBIXG00005003605) #26	SLC9A5 (ENSBIXG00005021398) #27	PLEKHG4 (ENSBIXG00005021557) #28	KCTD19 (ENSBIXG00005021614) #29	ENSBIXG00005003649	LRRC36 (ENSBIXG00005021780) #30	TPPP3 (ENSBIXG00005021813) #31	ZDHHC1 (ENSBIXG00005021870) #32	HSD11B2 (ENSBIXG00005021881) #33	ATP6V0D1 (ENSBIXG00005003697) #34	AGRP (ENSBIXG00005021957) #35	RIPOR1 (ENSBIXG00005022104) #36
American bison	DUPLICATION
American bison	MODERN SPECIES	3150	COL14A1 (ENSBBBG00000014949)	DEPTOR (ENSBBBG00000000969)	DSCC1 (ENSBBBG00000000990)	TAF2 (ENSBBBG00000001006)	ENPP2 (ENSBBBG00000001054)	ENSBBBG00000001221	SLC10A5 (ENSBBBG00000001243)	ZFAND1 (ENSBBBG00000003681)	CHMP4C (ENSBBBG00000014880)	SNX16 (ENSBBBG00000014866)	ENSBBBG00000003657	RALYL (ENSBBBG00000002824)	ENSBBBG00000014729	ENSBBBG00000014705	LRRCC1 (ENSBBBG00000014695)	ENSBBBG00000014664 #22	ENSBBBG00000014657	ENSBBBG00000014641	CA13 (ENSBBBG00000014615)	ENSBBBG00000014608	ENSBBBG00000014601	ENSBBBG00000014595	ENSBBBG00000009132	CA3 (ENSBBBG00000009126)	CA2 (ENSBBBG00000003416)	ENSBBBG00000003411	ATP6V0D2 (ENSBBBG00000014549) ##34	ENSBBBG00000014538	WWP1 (ENSBBBG00000003399)	RMDN1 (ENSBBBG00000003379)
American bison	MODERN SPECIES	3211	RRAD (ENSBBBG00000014738)	CIAO2B (ENSBBBG00000014743)	CES2 (ENSBBBG00000014778) #12	ENSBBBG00000014790	ENSBBBG00000014799	CES4A (ENSBBBG00000007359)	ENSBBBG00000003663 #13	PHAF1 (ENSBBBG00000014888) #14	B3GNT9 (ENSBBBG00000003675) #15	TRADD (ENSBBBG00000007361) #16	FBXL8 (ENSBBBG00000014921)	HSF4 (ENSBBBG00000001199) #17	NOL3 (ENSBBBG00000001188) #18	MATCAP1 (ENSBBBG00000001162) #20	EXOC3L1 (ENSBBBG00000001140) #21	E2F4 (ENSBBBG00000001117) #22	ELMO3 (ENSBBBG00000000997) #23	ENSBBBG00000000951 #24	ENSBBBG00000000949	TMEM208 (ENSBBBG00000000934) #25	ENSBBBG00000000858 #26	ENSBBBG00000000848 #26	SLC9A5 (ENSBBBG00000000822) #27	PLEKHG4 (ENSBBBG00000014974) #28	KCTD19 (ENSBBBG00000014992) #29	ENSBBBG00000014995	LRRC36 (ENSBBBG00000003737) #30	TPPP3 (ENSBBBG00000015070) #31	ZDHHC1 (ENSBBBG00000015085) #32	HSD11B2 (ENSBBBG00000003742) #33	ATP6V0D1 (ENSBBBG00000015106) #34
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Goat	MODERN SPECIES	9	CDH16 (ENSCHIG00000023982)	RRAD (ENSCHIG00000014464)	CIAO2B (ENSCHIG00000013136)	CES2 (ENSCHIG00000019303) #12	CES3 (ENSCHIG00000024208)	CES4A (ENSCHIG00000016586)	CBFB (ENSCHIG00000020674) #13	PHAF1 (ENSCHIG00000020303) #14	B3GNT9 (ENSCHIG00000014321) #15	TRADD (ENSCHIG00000024921) #16	FBXL8 (ENSCHIG00000015480)	HSF4 (ENSCHIG00000003853) #17	ENSCHIG00000017201 #18	MATCAP1 (ENSCHIG00000015211) #20	EXOC3L1 (ENSCHIG00000024506) #21	E2F4 (ENSCHIG00000016663) #22	ELMO3 (ENSCHIG00000026708) #23	ENSCHIG00000019793 #24	TMEM208 (ENSCHIG00000025511) #25	FHOD1 (ENSCHIG00000025985) #26	SLC9A5 (ENSCHIG00000010558) #27	PLEKHG4 (ENSCHIG00000014998) #28	KCTD19 (ENSCHIG00000018050) #29	LRRC36 (ENSCHIG00000011267) #30	TPPP3 (ENSCHIG00000021248) #31	ZDHHC1 (ENSCHIG00000009629) #32	HSD11B2 (ENSCHIG00000004358) #33	ATP6V0D1 (ENSCHIG00000017558) #34	AGRP (ENSCHIG00000025951) #35	RIPOR1 (ENSCHIG00000008773) #36	CTCF (ENSCHIG00000013690) #37
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	19	THAP2 (ENSOARG00020002399)	TMEM19 (ENSOARG00020002407)	RAB21 (ENSOARG00020002440)	TBC1D15 (ENSOARG00020002469)	TPH2 (ENSOARG00020002610)	ENSOARG00020002632	TRHDE (ENSOARG00020002645)	ENSOARG00020002666	NSMCE1 (ENSOARG00020002686)	KDM8 (ENSOARG00020002713)	ENSOARG00020002731	ATXN7L3B (ENSOARG00020002735)	KCNC2 (ENSOARG00020002747)	CAPS2 (ENSOARG00020002788)	GLIPR1L1 (ENSOARG00020002811)	ENSOARG00020002828 #22	GLIPR1 (ENSOARG00020002870)	KRR1 (ENSOARG00020002893)	PHLDA1 (ENSOARG00020002913)	ENSOARG00020002933	OSBPL8 (ENSOARG00020003030)	BBS10 (ENSOARG00020003354)	ENSOARG00020003381	ZDHHC17 (ENSOARG00020003403)	CSRP2 (ENSOARG00020003468)	E2F7 (ENSOARG00020003529)	NAV3 (ENSOARG00020003813)	SYT1 (ENSOARG00020005626)	PAWR (ENSOARG00020005665)	PPP1R12A (ENSOARG00020005817)	PTPRQ (ENSOARG00020008080)
Rambouillet Sheep	MODERN SPECIES	5	CDH16 (ENSOARG00020017267)	RRAD (ENSOARG00020017701)	CIAO2B (ENSOARG00020017741)	CES2 (ENSOARG00020017788) #12	CES3 (ENSOARG00020017918)	CES4A (ENSOARG00020018190)	CBFB (ENSOARG00020018510) #13	PHAF1 (ENSOARG00020018589) #14	B3GNT9 (ENSOARG00020018774) #15	TRADD (ENSOARG00020018788) #16	FBXL8 (ENSOARG00020018825)	HSF4 (ENSOARG00020018866) #17	ENSOARG00020018928 #18	MATCAP1 (ENSOARG00020018962) #20	EXOC3L1 (ENSOARG00020019062) #21	ENSOARG00020019148 #22	ELMO3 (ENSOARG00020019220) #23	ENSOARG00020019801 #24	TMEM208 (ENSOARG00020019829) #25	SLC9A5 (ENSOARG00020020928) #27	PLEKHG4 (ENSOARG00020021085) #28	KCTD19 (ENSOARG00020021493) #29	LRRC36 (ENSOARG00020021598) #30	TPPP3 (ENSOARG00020021942) #31	ZDHHC1 (ENSOARG00020021964) #32	HSD11B2 (ENSOARG00020022068) #33	ATP6V0D1 (ENSOARG00020022126) #34	AGRP (ENSOARG00020022169) #35	RIPOR1 (ENSOARG00020022218) #36	CTCF (ENSOARG00020022476) #37	CARMIL2 (ENSOARG00020022572)
Atlantogenata	ANCESTRAL SPECIES	24	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Xenarthra	ANCESTRAL SPECIES	31	ENSGT00550000074901	ENSGT00940000159757	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000162243 #15	ENSGT00940000153528.a.b.a.a #14	ENSGT00390000002016 #16	ENSGT00940000158063 #17	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34
Armadillo	MODERN SPECIES	1766	NAE1 (ENSDNOG00000019167)	CA7 (ENSDNOG00000019175)	PDP2 (ENSDNOG00000001626)	CDH16 (ENSDNOG00000040290)	RRAD (ENSDNOG00000004763)	CIAO2B (ENSDNOG00000019604)	CES2 (ENSDNOG00000036173) #12	CES3 (ENSDNOG00000016221)	CBFB (ENSDNOG00000045626) #13	B3GNT9 (ENSDNOG00000036814) #15	PHAF1 (ENSDNOG00000032949) #14	TRADD (ENSDNOG00000043193) #16	HSF4 (ENSDNOG00000032363) #17	MATCAP1 (ENSDNOG00000038114) #20	EXOC3L1 (ENSDNOG00000033619) #21	E2F4 (ENSDNOG00000041139) #22	ELMO3 (ENSDNOG00000002885) #23	ENSDNOG00000044213 #24	TMEM208 (ENSDNOG00000044413) #25	FHOD1 (ENSDNOG00000019344) #26	SLC9A5 (ENSDNOG00000002725) #27	PLEKHG4 (ENSDNOG00000000367) #28	KCTD19 (ENSDNOG00000012061) #29	ENSDNOG00000036562	LRRC36 (ENSDNOG00000012543) #30	TPPP3 (ENSDNOG00000018201) #31	ZDHHC1 (ENSDNOG00000031670) #32	HSD11B2 (ENSDNOG00000011831) #33	ATP6V0D1 (ENSDNOG00000045091) #34
Afrotheria	ANCESTRAL SPECIES	48	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	7974														MATCAP1 (ENSETEG00000001966) #20	EXOC3L1 (ENSETEG00000001967) #21	ENSETEG00000001969 #22	ENSETEG00000001971 #26
Tenrec	MODERN SPECIES	19132																ENSETEG00000016048 #22
Afrotheria_a	ANCESTRAL SPECIES	47	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000153793 #12	ENSGT00940000155200	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a #34	ENSGT00940000154258.b #35	ENSGT00940000153717.b #36	ENSGT00940000156672 #37
Elephant	MODERN SPECIES	419	PDP2 (ENSLAFG00000001832)	CDH16 (ENSLAFG00000001834)	RRAD (ENSLAFG00000001836)	CIAO2B (ENSLAFG00000025861)	CES2 (ENSLAFG00000007540) #12	CES3 (ENSLAFG00000001736)	ENSLAFG00000005502 #13	PHAF1 (ENSLAFG00000006284) #14	B3GNT9 (ENSLAFG00000027277) #15	TRADD (ENSLAFG00000006288) #16	FBXL8 (ENSLAFG00000022599)	HSF4 (ENSLAFG00000021984) #17	ENSLAFG00000025992 #18	MATCAP1 (ENSLAFG00000027287) #20	EXOC3L1 (ENSLAFG00000032050) #21	E2F4 (ENSLAFG00000026216) #22	ELMO3 (ENSLAFG00000006304) #23	ENSLAFG00000006309 #24	TMEM208 (ENSLAFG00000021815) #25	FHOD1 (ENSLAFG00000004623) #26	SLC9A5 (ENSLAFG00000010117) #27	ENSLAFG00000004633 #28	KCTD19 (ENSLAFG00000004638) #29	LRRC36 (ENSLAFG00000004644) #30	TPPP3 (ENSLAFG00000009485) #31	ZDHHC1 (ENSLAFG00000004648) #32	HSD11B2 (ENSLAFG00000008952) #33	ATP6V0D1 (ENSLAFG00000008957) #34	AGRP (ENSLAFG00000016061) #35	RIPOR1 (ENSLAFG00000030162) #36	CTCF (ENSLAFG00000007101) #37
Hyrax	MODERN SPECIES	5087								CBFB (ENSPCAG00000012845) #13	PHAF1 (ENSPCAG00000012878) #14	TRADD (ENSPCAG00000012975) #16	FBXL8 (ENSPCAG00000013001)	HSF4 (ENSPCAG00000013012) #17	ENSPCAG00000013098 #18	MATCAP1 (ENSPCAG00000013111) #20	EXOC3L1 (ENSPCAG00000013144) #21	E2F4 (ENSPCAG00000013266) #22	ELMO3 (ENSPCAG00000013300) #23	ENSPCAG00000013427 #24	TMEM208 (ENSPCAG00000013471) #25	FHOD1 (ENSPCAG00000013507) #26	SLC9A5 (ENSPCAG00000013649) #27
Marsupialia	ANCESTRAL SPECIES	17	ENSGT00940000160687	ENSGT00940000161650	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000155200	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212.ib #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a.q #34	ENSGT00940000154258.b #35	ENSGT00940000163363	ENSGT00940000153717.b #36
Opossum	MODERN SPECIES		PDP2 (ENSMODG00000006788)	CDH16 (ENSMODG00000006775)	CIAO2B (ENSMODG00000006732)	CES2.1 (ENSMODG00000006625)	ENSMODG00000048451 #12	ENSMODG00000006385	CES4A (ENSMODG00000006366)	CBFB (ENSMODG00000006352) #13	PHAF1 (ENSMODG00000006324) #14	B3GNT9 (ENSMODG00000023085) #15	TRADD (ENSMODG00000006242) #16	HSF4 (ENSMODG00000006228) #17	ENSMODG00000006210 #18	MATCAP1 (ENSMODG00000006203) #20	EXOC3L1 (ENSMODG00000006186) #21	E2F4 (ENSMODG00000006150) #22	ELMO3 (ENSMODG00000006128) #23	ENSMODG00000006063 #24	TMEM208 (ENSMODG00000006058) #25	FHOD1 (ENSMODG00000006046) #26	SLC9A5 (ENSMODG00000006020) #27	ENSMODG00000005997 #28	KCTD19 (ENSMODG00000005972) #29	LRRC36 (ENSMODG00000005963) #30	TPPP3 (ENSMODG00000005950) #31	ZDHHC1 (ENSMODG00000005943) #32	ENSMODG00000005918 #34	AGRP (ENSMODG00000005903) #35	ENSMODG00000045811	ENSMODG00000005860	ENSMODG00000041452
Marsupialia_b	ANCESTRAL SPECIES	19	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000155200.g.b	ENSGT00940000155200.g.a	ENSGT00940000155200.h	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212.ib #26	ENSGT00940000159190 #27	ENSGT00940000158845.o #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a.q #34	ENSGT00940000154258.b #35	ENSGT00940000163363	ENSGT00940000153717.b #36
Diprotodontia	ANCESTRAL SPECIES	13	ENSGT00940000159836	ENSGT00390000017697.b	ENSGT00940000155200.g.b	ENSGT00940000155200.g.a	ENSGT00940000155200.h	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212.ib #26	ENSGT00940000159190 #27	ENSGT00940000158845.o #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a.q #34	ENSGT00940000154258.b #35	ENSGT00940000163363	ENSGT00940000153717.b #36
Diprotodontia_a	ANCESTRAL SPECIES	14	ENSGT00390000017697.b	ENSGT00940000155200.g.a.b.a	ENSGT00940000155200.g.b	ENSGT00940000155200.g.a.a	ENSGT00940000155200.h	ENSGT00940000162924	ENSGT00390000018132 #13	ENSGT00940000153528.a.b.a.a #14	ENSGT00940000162243 #15	ENSGT00390000002016 #16	ENSGT00420000029943	ENSGT00940000158063 #17	ENSGT00510000049353 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212.ib #26	ENSGT00940000159190 #27	ENSGT00940000158845.o.a #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32	ENSGT00940000159716 #33	ENSGT00390000002200.a.a.q #34	ENSGT00940000154258.b #35	ENSGT00940000163363	ENSGT00940000153717.b #36
Common wonbat	MODERN SPECIES	312				ENSVURG00010021749	ENSVURG00010021716	CES4A (ENSVURG00010021710)	CBFB (ENSVURG00010021706) #13	PHAF1 (ENSVURG00010021697) #14	B3GNT9 (ENSVURG00010021694) #15	TRADD (ENSVURG00010021691) #16	ENSVURG00010021684	ENSVURG00010021678 #17	ENSVURG00010021674 #17	ENSVURG00010021668 #18	EXOC3L1 (ENSVURG00010021660) #21	E2F4 (ENSVURG00010021654) #22	ELMO3 (ENSVURG00010021648) #23	ENSVURG00010021642 #24	TMEM208 (ENSVURG00010021633) #25	FHOD1 (ENSVURG00010021625) #26	SLC9A5 (ENSVURG00010021611) #27	ENSVURG00010021593 #28	KCTD19 (ENSVURG00010021585) #29	LRRC36 (ENSVURG00010021578) #30	TPPP3 (ENSVURG00010021572) #31	ZDHHC1 (ENSVURG00010021560) #32	HSD11B2 (ENSVURG00010021554) #33	ATP6V0D1 (ENSVURG00010021547) #34	AGRP (ENSVURG00010021542) #35	ENSVURG00010021537	ENSVURG00010021530
koala	MODERN SPECIES	34	ENSPCIG00000017521	ENSPCIG00000036489	ENSPCIG00000037319	ENSPCIG00000015988	ENSPCIG00000017523	ENSPCIG00000017525	CBFB (ENSPCIG00000017526) #13	PHAF1 (ENSPCIG00000017527) #14	B3GNT9 (ENSPCIG00000017528) #15	TRADD (ENSPCIG00000017529) #16	FBXL8 (ENSPCIG00000017530)	ENSPCIG00000017531 #17	ENSPCIG00000017532 #18	MATCAP1 (ENSPCIG00000034173) #20	EXOC3L1 (ENSPCIG00000017535) #21	E2F4 (ENSPCIG00000017536) #22	ELMO3 (ENSPCIG00000017537) #23	ENSPCIG00000017538 #24	TMEM208 (ENSPCIG00000017539) #25	ENSPCIG00000017540 #26	ENSPCIG00000036240 #26	SLC9A5 (ENSPCIG00000017541) #27	ENSPCIG00000033012 #28	ENSPCIG00000017542 #28	KCTD19 (ENSPCIG00000017543) #29	LRRC36 (ENSPCIG00000017545) #30	TPPP3 (ENSPCIG00000017546) #31	ZDHHC1 (ENSPCIG00000017547) #32	HSD11B2 (ENSPCIG00000032213) #33	ATP6V0D1 (ENSPCIG00000031553) #34	ENSPCIG00000000375
Wallaby	MODERN SPECIES	11693																E2F4 (ENSMEUG00000012534) #22	ELMO3 (ENSMEUG00000012507) #23	ENSMEUG00000012494 #24
Tasmanian devil	MODERN SPECIES	1	RRAD (ENSSHAG00000027207)	CIAO2B (ENSSHAG00000021172)	ENSSHAG00000007562	ENSSHAG00000006251	ENSSHAG00000007978	ENSSHAG00000022801	CES3 (ENSSHAG00000030468)	ENSSHAG00000009427	ENSSHAG00000026641 #13	B3GNT9 (ENSSHAG00000023665) #15	PHAF1 (ENSSHAG00000027333) #14	ENSSHAG00000010769 #17	ENSSHAG00000010997 #18	MATCAP1 (ENSSHAG00000026018) #20	EXOC3L1 (ENSSHAG00000011228) #21	E2F4 (ENSSHAG00000011293) #22	ELMO3 (ENSSHAG00000011361) #23	ENSSHAG00000011429 #24	TMEM208 (ENSSHAG00000029035) #25	SLC9A5 (ENSSHAG00000011867) #27	ENSSHAG00000012075 #28	KCTD19 (ENSSHAG00000012115) #29	LRRC36 (ENSSHAG00000012364) #30	ZDHHC1 (ENSSHAG00000012709) #32	HSD11B2 (ENSSHAG00000029535) #33	ENSSHAG00000021333 #34	ENSSHAG00000013664 #35	ENSSHAG00000014097	RIPOR1 (ENSSHAG00000001542) #36	CTCF (ENSSHAG00000023860) #37	CARMIL2 (ENSSHAG00000004365)
Platypus	MODERN SPECIES	84	ENSOANG00000002703	ENSOANG00000042529	ENSOANG00000013673	RAB43 (ENSOANG00000006323)	ENSOANG00000019866	CES4A (ENSOANG00000005376)	ENSOANG00000014469 #13	PHAF1 (ENSOANG00000001684) #14	B3GNT9 (ENSOANG00000001683) #15	TRADD (ENSOANG00000043400) #16	ENSOANG00000048022	ENSOANG00000002419 #17	ENSOANG00000038691 #18	MATCAP1 (ENSOANG00000000799) #20	ENSOANG00000045487 #21	ENSOANG00000045368 #22	ELMO3 (ENSOANG00000015197) #23	ENSOANG00000015196 #24	TMEM208 (ENSOANG00000036828) #25	FHOD1 (ENSOANG00000015194) #26	ENSOANG00000036976 #28	ENSOANG00000020405 #29	HSD11B2 (ENSOANG00000009417) #33	ATP6V0D1 (ENSOANG00000041210) #34	ENSOANG00000003541 #35	ENSOANG00000003542	RIPOR1 (ENSOANG00000009323) #36	CTCF (ENSOANG00000041591) #37	CARMIL2 (ENSOANG00000000267)	ENSOANG00000051017	PARD6A (ENSOANG00000004480)
Sauria	ANCESTRAL SPECIES	14	ENSGT00390000004877	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00390000011138	ENSGT00940000156501	ENSGT00940000158257	ENSGT00390000018598	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25
Lepidosauria	ANCESTRAL SPECIES	110	ENSGT00940000156672 #37	ENSGT00940000161003	ENSGT00390000004877	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00390000011138	ENSGT00940000156501	ENSGT00940000158257	ENSGT00390000018598	ENSGT00390000003044	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25
tuatara	MODERN SPECIES	275																ENSSPUG00000011453 #22	TMEM208 (ENSSPUG00000011430) #25
Episquamata	ANCESTRAL SPECIES	11	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00390000011138	ENSGT00940000156501	ENSGT00940000163363.e.b.e.a	ENSGT00940000158257	ENSGT00390000018598	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000159191 #32	ENSGT00940000153875.d.b #31	ENSGT00940000159836	ENSGT00940000160687	ENSGT00940000159757	ENSGT00550000074901	ENSGT00390000005075	ENSGT00390000008295.a	ENSGT00940000159573	ENSGT00940000160432	ENSGT00940000162264	ENSGT00940000158005
Laterata	ANCESTRAL SPECIES	19	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00390000011138	ENSGT00940000156501	ENSGT00940000163363.e.b.e.a	ENSGT00940000158257	ENSGT00390000018598	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00950000182966.A	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000159191 #32	ENSGT00940000153875.d.b #31	ENSGT00940000159836	ENSGT00940000160687	ENSGT00940000159757	ENSGT00550000074901	ENSGT00390000005075	ENSGT00390000008295.a	ENSGT00940000159573	ENSGT00940000160432	ENSGT00940000162264	ENSGT00940000158005
Common wall lizard	MODERN SPECIES	16	PARD6A (ENSPMRG00000008102)	ENKD1 (ENSPMRG00000008097)	GFOD2 (ENSPMRG00000008087)	ENSPMRG00000008074	RANBP10 (ENSPMRG00000008058)	ENSPMRG00000008046	ENSPMRG00000008037	THAP11 (ENSPMRG00000008033)	NUTF2 (ENSPMRG00000008028)	EDC4 (ENSPMRG00000008009)	NRN1L (ENSPMRG00000008004)	PSKH1 (ENSPMRG00000007996)	ENSPMRG00000007989	ENSPMRG00000007981	EXOC3L1 (ENSPMRG00000007976) #21	E2F4 (ENSPMRG00000007959) #22	ELMO3 (ENSPMRG00000007947) #23	ENSPMRG00000007940 #24	TMEM208 (ENSPMRG00000007936) #25	ZDHHC1 (ENSPMRG00000007928) #32	TPPP3 (ENSPMRG00000007922) #31	RRAD (ENSPMRG00000007919)	PDP2 (ENSPMRG00000007917)	CA7 (ENSPMRG00000007865)	NAE1 (ENSPMRG00000007857)	TERB1 (ENSPMRG00000007847)	DYNC1LI2 (ENSPMRG00000009835)	CMTM4 (ENSPMRG00000009828)	CMTM3 (ENSPMRG00000009820)	TK2 (ENSPMRG00000009758)	ENSPMRG00000009722
Argentine black and white tegu	MODERN SPECIES	57	CTCF (ENSSMRG00000008740) #37	ENSSMRG00000008742	PARD6A (ENSSMRG00000008746)	ENKD1 (ENSSMRG00000008747)	ENSSMRG00000008748	GFOD2 (ENSSMRG00000008750)	RANBP10 (ENSSMRG00000008752)	TSNAXIP1 (ENSSMRG00000008758)	ENSSMRG00000008770	ENSSMRG00000008772	NUTF2 (ENSSMRG00000008773)	EDC4 (ENSSMRG00000008780)	NRN1L (ENSSMRG00000011002)	PSKH1 (ENSSMRG00000011009)	EXOC3L1 (ENSSMRG00000011010) #21	E2F4 (ENSSMRG00000011011) #22	ELMO3 (ENSSMRG00000011015) #23	ENSSMRG00000011018 #24	TMEM208 (ENSSMRG00000011019) #25	ZDHHC1 (ENSSMRG00000011021) #32	TPPP3 (ENSSMRG00000011023) #31	RRAD (ENSSMRG00000011024)	CA7 (ENSSMRG00000011027)	NAE1 (ENSSMRG00000011106)	TERB1 (ENSSMRG00000011109)	DYNC1LI2 (ENSSMRG00000011114)	CMTM4 (ENSSMRG00000011134)	CMTM3 (ENSSMRG00000011135)	CKLF (ENSSMRG00000011136)	TK2 (ENSSMRG00000011139)	ENSSMRG00000011142
Toxicofera	ANCESTRAL SPECIES	16	ENSGT00390000004877	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00940000156501	ENSGT00940000163363.e.b.e.a	ENSGT00940000158257	ENSGT00390000018598	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000159191 #32	ENSGT00940000153875.d.b #31	ENSGT00940000159836	ENSGT00940000160687	ENSGT00940000159757	ENSGT00550000074901	ENSGT00390000005075	ENSGT00390000008295.a	ENSGT00940000159573	ENSGT00940000160432	ENSGT00940000162264	ENSGT00940000158005
Lizard	MODERN SPECIES	909	RIPOR1 (ENSACAG00000000866) #36	CTCF (ENSACAG00000001050) #37	PARD6A (ENSACAG00000001298)	ENSACAG00000001332	GFOD2 (ENSACAG00000040699)	RANBP10 (ENSACAG00000001369)	TSNAXIP1 (ENSACAG00000001464)	ENSACAG00000001517	THAP11 (ENSACAG00000001520)	NUTF2 (ENSACAG00000043331)	EDC4 (ENSACAG00000001561)	NRN1L (ENSACAG00000035762)	PSKH1 (ENSACAG00000001729)	CTRL (ENSACAG00000001737)	EXOC3L1 (ENSACAG00000001844) #21	E2F4 (ENSACAG00000028484) #22	ENSACAG00000040320	ELMO3 (ENSACAG00000001972) #23	ENSACAG00000002306 #24	TMEM208 (ENSACAG00000002308) #25	ENSACAG00000002334 #32	ENSACAG00000002364 #31	RRAD (ENSACAG00000002380)	PDP2 (ENSACAG00000002437)	NAE1 (ENSACAG00000002445)	TERB1 (ENSACAG00000002618)	ENSACAG00000035787	DYNC1LI2 (ENSACAG00000002640)	CMTM4 (ENSACAG00000040539)	ENSACAG00000036514	CMTM3 (ENSACAG00000002812)
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000156252.c #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000156252.c #22
Blue-lipped sea krait	MODERN SPECIES	6650																ENSLLTG00000003716 #22
Elapidae	ANCESTRAL SPECIES	17	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00940000156501	ENSGT00940000163363.e.b.e.a.a.a	ENSGT00940000163363.e.b.e.a.a.b	ENSGT00940000158257	ENSGT00390000018598	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b.e.a	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252.d #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000159191 #32	ENSGT00940000153875.d.b.p #31	ENSGT00940000159836	ENSGT00940000160687	ENSGT00940000159757.c	ENSGT00550000074901	ENSGT00390000005075	ENSGT00390000008295.a	ENSGT00940000159573	ENSGT00940000160432	ENSGT00940000162264	ENSGT00940000158005
Indian cobra	MODERN SPECIES	12	ENKD1 (ENSNNAG00000015215)	GFOD2 (ENSNNAG00000015201)	ENSNNAG00000015178	ENSNNAG00000015143	RANBP10 (ENSNNAG00000015093)	ENSNNAG00000015074	ENSNNAG00000014768	THAP11 (ENSNNAG00000014739)	NUTF2 (ENSNNAG00000014714)	EDC4 (ENSNNAG00000013835)	NRN1L (ENSNNAG00000013787)	PSKH1 (ENSNNAG00000013781)	ENSNNAG00000013769	CTRL (ENSNNAG00000013758)	EXOC3L1 (ENSNNAG00000013704) #21	E2F4 (ENSNNAG00000013662) #22	ELMO3 (ENSNNAG00000013593) #23	ENSNNAG00000013558 #24	TMEM208 (ENSNNAG00000013539) #25	ZDHHC1 (ENSNNAG00000013515) #32	TPPP3 (ENSNNAG00000013506) #31	RRAD (ENSNNAG00000013492)	PDP2 (ENSNNAG00000013482)	CA7 (ENSNNAG00000013214)	NAE1 (ENSNNAG00000013175)	TERB1 (ENSNNAG00000013131)	DYNC1LI2 (ENSNNAG00000013105)	CMTM4 (ENSNNAG00000013091)	CMTM3 (ENSNNAG00000013059)	CKLF (ENSNNAG00000013042)	TK2 (ENSNNAG00000013014)
Elapidae_a	ANCESTRAL SPECIES	28	ENSGT00390000004877	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00940000156501	ENSGT00940000158257	ENSGT00390000018598	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b.e.a	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT00950000182966.A	ENSGT01030000234613.a.b #21	ENSGT00940000156252.d #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000159191 #32	ENSGT00940000153875.d.b.p #31	ENSGT00940000159836	ENSGT00940000160687	ENSGT00940000159757.c	ENSGT00550000074901	ENSGT00390000005075	ENSGT00390000008295.a	ENSGT00940000159573	ENSGT00940000160432	ENSGT00940000162264	ENSGT00940000158005
Blue-lipped sea krait	MODERN SPECIES	3130																E2F4 (ENSLLTG00000017845) #22	ELMO3 (ENSLLTG00000017849) #23	ENSLLTG00000017857 #24	TMEM208 (ENSLLTG00000017860) #25	ZDHHC1 (ENSLLTG00000017864) #32
Acanthophiinae	DUPLICATION
Acanthophiinae	DUPLICATION
Acanthophiinae	ANCESTRAL SPECIES	268															ENSGT00940000156252.d.b #22	ENSGT00940000156252.d.a.a #22
Eastern brown snake	MODERN SPECIES	119	ENSPTXG00000018205	ENSPTXG00000018204	ENSPTXG00000018203	ENSPTXG00000018202	ENSPTXG00000018201	ENSPTXG00000018200	THAP11 (ENSPTXG00000018199)	ENSPTXG00000018198	ENSPTXG00000018197	ENSPTXG00000018196	ENSPTXG00000018195	ENSPTXG00000018194	ENSPTXG00000018193	ENSPTXG00000018192 #21	ENSPTXG00000018191 #22	ENSPTXG00000018190 #22	ENSPTXG00000018189 #23	ENSPTXG00000018188 #24	ENSPTXG00000018187 #25	ENSPTXG00000018186 #32	ENSPTXG00000018185 #31	ENSPTXG00000018184	ENSPTXG00000018183	ENSPTXG00000018182	ENSPTXG00000018173	ENSPTXG00000018170	ENSPTXG00000018169
Mainland tiger snake	MODERN SPECIES	41		ENSNSUG00000009478	ENSNSUG00000009479	ENSNSUG00000009480	ENSNSUG00000009481	ENSNSUG00000009482	ENSNSUG00000009483	TSNAXIP1 (ENSNSUG00000009485)	ENSNSUG00000009489	EDC4 (ENSNSUG00000009493)	NRN1L (ENSNSUG00000009506)	PSKH1 (ENSNSUG00000009507)	ENSNSUG00000009508	ENSNSUG00000009509 #21	ENSNSUG00000009510 #22	E2F4 (ENSNSUG00000009511) #22	ELMO3 (ENSNSUG00000009512) #23	ENSNSUG00000009776 #24	TMEM208 (ENSNSUG00000009777) #25	ZDHHC1 (ENSNSUG00000009778) #32	RRAD (ENSNSUG00000009780)	PDP2 (ENSNSUG00000009783)	CA7 (ENSNSUG00000009784)	NAE1 (ENSNSUG00000009831)	TERB1 (ENSNSUG00000010169)	DYNC1LI2 (ENSNSUG00000010172)	CMTM4 (ENSNSUG00000010174)	ENSNSUG00000010176	TK2 (ENSNSUG00000010178)	ENSNSUG00000010288	CDH5 (ENSNSUG00000010302)
Acanthophiinae	ANCESTRAL SPECIES	26	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00950000183211.a.a.b.b	ENSGT00940000153866.B	ENSGT00940000156501	ENSGT00940000158257	ENSGT00390000018598	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b.e.a	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT00950000182966.A	ENSGT01030000234613.a.b #21	ENSGT00940000156252.d.a.b #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000159191 #32	ENSGT00940000153875.d.b.p #31	ENSGT00940000159836	ENSGT00940000160687	ENSGT00940000159757.c	ENSGT00550000074901	ENSGT00390000005075	ENSGT00390000008295.a	ENSGT00940000159573	ENSGT00940000160432	ENSGT00940000162264	ENSGT00940000158005
Eastern brown snake	MODERN SPECIES	120	ENSPTXG00000008116 #36	ENSPTXG00000008093 #37	ENSPTXG00000008091	ENSPTXG00000008089	ENSPTXG00000008087	ENSPTXG00000008069	ENSPTXG00000008061	ENSPTXG00000008060	ENSPTXG00000008059	ENSPTXG00000008057	ENSPTXG00000008055	ENSPTXG00000008053	ENSPTXG00000008050	ENSPTXG00000008047	ENSPTXG00000008045 #21	ENSPTXG00000008044 #22	ENSPTXG00000008039 #23	ENSPTXG00000008021 #24	ENSPTXG00000008019 #25	ENSPTXG00000008018 #32	ENSPTXG00000008017 #31	ENSPTXG00000008010	ENSPTXG00000008008	ENSPTXG00000007836	ENSPTXG00000007835	ENSPTXG00000007833	ENSPTXG00000007830
Acanthophiinae	ANCESTRAL SPECIES	268																ENSGT00940000156252.d.b #22	ENSGT00940000156252.d.a.a #22
Mainland tiger snake	MODERN SPECIES	41			ENSNSUG00000009478	ENSNSUG00000009479	ENSNSUG00000009480	ENSNSUG00000009481	ENSNSUG00000009482	ENSNSUG00000009483	TSNAXIP1 (ENSNSUG00000009485)	ENSNSUG00000009489	EDC4 (ENSNSUG00000009493)	NRN1L (ENSNSUG00000009506)	PSKH1 (ENSNSUG00000009507)	ENSNSUG00000009508	ENSNSUG00000009509 #21	ENSNSUG00000009510 #22	E2F4 (ENSNSUG00000009511) #22	ELMO3 (ENSNSUG00000009512) #23	ENSNSUG00000009776 #24	TMEM208 (ENSNSUG00000009777) #25	ZDHHC1 (ENSNSUG00000009778) #32	RRAD (ENSNSUG00000009780)	PDP2 (ENSNSUG00000009783)	CA7 (ENSNSUG00000009784)	NAE1 (ENSNSUG00000009831)	TERB1 (ENSNSUG00000010169)	DYNC1LI2 (ENSNSUG00000010172)	CMTM4 (ENSNSUG00000010174)	ENSNSUG00000010176	TK2 (ENSNSUG00000010178)	ENSNSUG00000010288
Eastern brown snake	MODERN SPECIES	119	ENSPTXG00000018206 #37	ENSPTXG00000018205	ENSPTXG00000018204	ENSPTXG00000018203	ENSPTXG00000018202	ENSPTXG00000018201	ENSPTXG00000018200	THAP11 (ENSPTXG00000018199)	ENSPTXG00000018198	ENSPTXG00000018197	ENSPTXG00000018196	ENSPTXG00000018195	ENSPTXG00000018194	ENSPTXG00000018193	ENSPTXG00000018192 #21	ENSPTXG00000018191 #22	ENSPTXG00000018190 #22	ENSPTXG00000018189 #23	ENSPTXG00000018188 #24	ENSPTXG00000018187 #25	ENSPTXG00000018186 #32	ENSPTXG00000018185 #31	ENSPTXG00000018184	ENSPTXG00000018183	ENSPTXG00000018182	ENSPTXG00000018173	ENSPTXG00000018170	ENSPTXG00000018169
Archelosauria	ANCESTRAL SPECIES	50	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00940000156501	ENSGT00940000158257	ENSGT00390000018598	ENSGT00990000212499	ENSGT00940000165060	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000155365.b	ENSGT00940000154258.b #35	ENSGT00390000002200.a.a #34	ENSGT00940000159716 #33	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606.b #29	ENSGT00940000175932	ENSGT00390000007606.a #29
Cryptodira	ANCESTRAL SPECIES	14		ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00940000156501	ENSGT00940000158257	ENSGT00390000018598	ENSGT00990000212499	ENSGT00940000165060	ENSGT00390000003044	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000155365.b	ENSGT00940000154258.b #35	ENSGT00390000002200.a.a #34	ENSGT00940000159716 #33	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606.b #29	ENSGT00940000175932	ENSGT00940000153875.d.b #31
Testudinoidea	ANCESTRAL SPECIES	13	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00940000156501	ENSGT00940000158257	ENSGT00390000018598	ENSGT00390000003044.j	ENSGT00990000212499	ENSGT00940000165060	ENSGT00390000003044.i	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139.k #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000155365.b	ENSGT00940000154258.b #35	ENSGT00390000002200.a.a #34	ENSGT00940000159716 #33	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606.b #29	ENSGT00940000175932.a	ENSGT00940000153875.d.b #31
Emydidae	ANCESTRAL SPECIES	33	ENSGT00940000154065.a	ENSGT00950000183151.a.a.b	ENSGT00940000168336	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00940000156501	ENSGT00940000158257	ENSGT00390000018598	ENSGT00390000003044.i	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139.k #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000155365.b	ENSGT00940000154258.b #35	ENSGT00390000002200.a.a #34	ENSGT00940000159716.a #33	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606.b #29	ENSGT00940000153875.d.b #31	ENSGT00940000159191 #32
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	73	ENSTMTG00000016087	ENSTMTG00000016035	ENSTMTG00000015978	ENSTMTG00000015964	ENSTMTG00000015957	ENSTMTG00000015946	ENSTMTG00000015726	ENSTMTG00000015672	ENSTMTG00000015640	ENSTMTG00000015624	ENSTMTG00000014668	ENSTMTG00000014576	ENSTMTG00000014567	ENSTMTG00000014554	ENSTMTG00000014511 #21	ENSTMTG00000014492 #22	ENSTMTG00000013562 #23	ENSTMTG00000013445 #24	ENSTMTG00000013416 #25	ENSTMTG00000013377 #20	ENSTMTG00000013366	ENSTMTG00000013361	ENSTMTG00000013335 #35	ENSTMTG00000013319 #34	ENSTMTG00000013306 #33	ENSTMTG00000009989 #26
Three-toed box turtle	MODERN SPECIES	74	ENSTMTG00000007136	ENSTMTG00000007118	ENSTMTG00000007071	ENSTMTG00000007034	ENSTMTG00000007027	ENSTMTG00000007023	ENSTMTG00000006979	ENSTMTG00000006931	ENSTMTG00000006863	ENSTMTG00000006846	ENSTMTG00000005571	ENSTMTG00000005470	ENSTMTG00000005461	ENSTMTG00000005442	ENSTMTG00000005375 #21	ENSTMTG00000005351 #22	ENSTMTG00000005315 #23	ENSTMTG00000005206 #24	ENSTMTG00000005180 #25	ENSTMTG00000005166 #25	ENSTMTG00000005148 #20	ENSTMTG00000005093	ENSTMTG00000005069	ENSTMTG00000005030 #35	ENSTMTG00000005013 #34	ENSTMTG00000004963 #33	ENSTMTG00000003995 #26
painted turtle	MODERN SPECIES	932	COG4 (ENSCPBG00000015859)	ENSCPBG00000015857	SF3B3 (ENSCPBG00000015853)	ENSCPBG00000015852	PARD6A (ENSCPBG00000015850)	ENKD1 (ENSCPBG00000015849)	GFOD2 (ENSCPBG00000015847)	RANBP10 (ENSCPBG00000015845)	ENSCPBG00000015844	ENSCPBG00000015842	NUTF2 (ENSCPBG00000015840)	EDC4 (ENSCPBG00000015685)	NRN1L (ENSCPBG00000015652)	PSKH1 (ENSCPBG00000015651)	CTRL (ENSCPBG00000015649)	E2F4 (ENSCPBG00000015647) #22	ELMO3 (ENSCPBG00000015646) #23	ENSCPBG00000015644 #24	TMEM208 (ENSCPBG00000015638) #25	MATCAP1 (ENSCPBG00000015636) #20	LCAT (ENSCPBG00000015633)	ENSCPBG00000015631	ENSCPBG00000015629 #35	ENSCPBG00000015627 #34
Testudinidae	ANCESTRAL SPECIES	17	ENSGT00940000168336	ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00940000156501	ENSGT00940000158257	ENSGT00990000212499	ENSGT00940000165060	ENSGT00390000003044.j	ENSGT00390000003044.i	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139.k #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000155365.b	ENSGT00940000154258.b #35	ENSGT00390000002200.a.a #34	ENSGT00940000159716 #33	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606.b #29	ENSGT00940000175932.a	ENSGT00940000153875.d.b #31
Abingdon island giant tortoise	MODERN SPECIES	1348							ENSCABG00000003986	ENSCABG00000003977	CENPT (ENSCABG00000003969)	NUTF2 (ENSCABG00000003964)	EDC4 (ENSCABG00000003958)	NRN1L (ENSCABG00000003954)	PSKH1 (ENSCABG00000003952)	CTRL (ENSCABG00000003947)	EXOC3L1 (ENSCABG00000003898) #21	E2F4 (ENSCABG00000003886) #22	ELMO3 (ENSCABG00000003870) #23	ENSCABG00000003865 #24	TMEM208 (ENSCABG00000003861) #25	MATCAP1 (ENSCABG00000003788) #20	LCAT (ENSCABG00000003777)	ENSCABG00000003772	ENSCABG00000003771	AGRP (ENSCABG00000003769) #35	ATP6V0D1 (ENSCABG00000003760) #34	HSD11B2 (ENSCABG00000003728) #33	FHOD1 (ENSCABG00000002823) #26	SLC9A5 (ENSCABG00000002801) #27	ENSCABG00000002797 #28	ENSCABG00000002794 #28	KCTD19 (ENSCABG00000002793) #29
Goode s thornscrub tortoise	MODERN SPECIES	3	SF3B3 (ENSGEVG00005018288)	ENSGEVG00005018393	PARD6A (ENSGEVG00005018443)	ENKD1 (ENSGEVG00005004118)	ENSGEVG00005004134	ENSGEVG00005004147	RANBP10 (ENSGEVG00005004172)	ENSGEVG00005004200	ENSGEVG00005004224	ENSGEVG00005004251	NUTF2 (ENSGEVG00005004279)	EDC4 (ENSGEVG00005004310)	NRN1L (ENSGEVG00005004361)	PSKH1 (ENSGEVG00005004407)	EXOC3L1 (ENSGEVG00005004462) #21	E2F4 (ENSGEVG00005004542) #22	ELMO3 (ENSGEVG00005004591) #23	ENSGEVG00005004626 #24	TMEM208 (ENSGEVG00005004643) #25	MATCAP1 (ENSGEVG00005004672) #20	LCAT (ENSGEVG00005004719)	ENSGEVG00005004754	AGRP (ENSGEVG00005004774) #35	ATP6V0D1 (ENSGEVG00005004809) #34	HSD11B2 (ENSGEVG00005004837) #33	FHOD1 (ENSGEVG00005004887) #26	SLC9A5 (ENSGEVG00005004932) #27	PLEKHG4 (ENSGEVG00005005012) #28	ENSGEVG00005005119 #29	ENSGEVG00005005175 #29	ENSGEVG00005005189
Chinese turtle	MODERN SPECIES	1440	NDRG4 (ENSPSIG00000004943)	SETD6 (ENSPSIG00000005364)	CNOT1 (ENSPSIG00000005499)	SLC38A7 (ENSPSIG00000006052)	ZDHHC1 (ENSPSIG00000006764) #32	TPPP3 (ENSPSIG00000007372) #31	PARD6A (ENSPSIG00000007537)	ENKD1 (ENSPSIG00000007590)	GFOD2 (ENSPSIG00000007597)	RANBP10 (ENSPSIG00000007615)	ENSPSIG00000008199	ENSPSIG00000008716	NUTF2 (ENSPSIG00000008982)	EDC4 (ENSPSIG00000009211)	PSKH1 (ENSPSIG00000009319)	E2F4 (ENSPSIG00000009614) #22	ENSPSIG00000001772	TMEM208 (ENSPSIG00000009628) #25	MATCAP1 (ENSPSIG00000009787) #20	LCAT (ENSPSIG00000009855)
Archosauria	ANCESTRAL SPECIES	65		ENSGT00950000183211.a.a.b	ENSGT00940000153866.B	ENSGT00940000156501	ENSGT00940000158257	ENSGT00990000212499	ENSGT00940000165060	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052
Aves	ANCESTRAL SPECIES	67					ENSGT00940000158257	ENSGT00990000212499	ENSGT00940000165060	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052
African ostrich	MODERN SPECIES	209							RANBP10 (ENSSCUG00000002930)	ENSSCUG00000002928	ENSSCUG00000002927	ENSSCUG00000002923	NUTF2 (ENSSCUG00000002921)	EDC4 (ENSSCUG00000002898)	NRN1L (ENSSCUG00000002889)	PSKH1 (ENSSCUG00000002888)	EXOC3L1 (ENSSCUG00000002884) #21	E2F4 (ENSSCUG00000002882) #22	ELMO3 (ENSSCUG00000002877) #23	TMEM208 (ENSSCUG00000002874) #25	MATCAP1 (ENSSCUG00000002872) #20	LCAT (ENSSCUG00000002869)
Neognathae	ANCESTRAL SPECIES	13	ENSGT00940000157894	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT01030000235537	ENSGT00990000204304	ENSGT00940000158257	ENSGT00940000165060	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.c.b	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00940000161003	ENSGT00390000004877	ENSGT00940000163363.e.a.b.d	ENSGT00940000163363.e.a.b.c.a	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A
Neognathae_b	ANCESTRAL SPECIES	15	ENSGT00940000157894	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT01030000235537	ENSGT01040000241829	ENSGT00940000158257	ENSGT00940000165060	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.c.a	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00940000161003	ENSGT00390000004877	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00900000141128	ENSGT00940000165483.c
Passeriformes	ANCESTRAL SPECIES	13	ENSGT00940000157894	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT00960000189770	ENSGT00390000006585	ENSGT00390000003044	ENSGT00940000158257	ENSGT00990000204304	ENSGT01030000235537	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.c.a.e	ENSGT00940000163363.e.a.b.c.a.f	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00940000161003	ENSGT00390000004877	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00900000141128
Great tit	MODERN SPECIES	2	RSPRY1 (ENSPMJG00000014116)	ARL2BP (ENSPMJG00000014117)	PLLP (ENSPMJG00000014118)	ENSPMJG00000014120	ENSPMJG00000014121	RANBP10 (ENSPMJG00000014123)	ENSPMJG00000014127	ENSPMJG00000014129	NUTF2 (ENSPMJG00000014133)	ENSPMJG00000014135	EDC4 (ENSPMJG00000014136)	NRN1L (ENSPMJG00000014137)	PSKH1 (ENSPMJG00000014140)	CTRL (ENSPMJG00000014141)	EXOC3L1 (ENSPMJG00000014144) #21	E2F4 (ENSPMJG00000014168) #22	ELMO3 (ENSPMJG00000014170) #23	TMEM208 (ENSPMJG00000014181) #25	LCAT (ENSPMJG00000014185)	ENSPMJG00000014186	ENSPMJG00000014187	ENSPMJG00000014189	RIPOR1 (ENSPMJG00000014195) #36	CTCF (ENSPMJG00000014214) #37	CARMIL2 (ENSPMJG00000014217)	ENSPMJG00000014219	ENSPMJG00000014221	AARS1 (ENSPMJG00000014223)	EXOSC6 (ENSPMJG00000014224)	ENSPMJG00000014226	ENSPMJG00000014232
Passeriformes_d	ANCESTRAL SPECIES	13	ENSGT00940000157894	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT00390000006585	ENSGT00390000003044	ENSGT00940000158257	ENSGT01040000241829	ENSGT00990000204304	ENSGT01030000235537	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.c.a.e	ENSGT00940000163363.e.a.b.c.a.f.a	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00940000161003	ENSGT00390000004877	ENSGT00940000163363.e.a.b.c.a.f.b	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A
Passeriformes_g	ANCESTRAL SPECIES	17	ENSGT00940000157894	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT00390000006585	ENSGT00390000003044	ENSGT00940000158257	ENSGT01040000241829	ENSGT00990000204304	ENSGT01030000235537	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.c.a.e	ENSGT00940000163363.e.a.b.c.a.f.a	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00390000004877	ENSGT00940000163363.e.a.b.c.a.f.b	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00900000141128
Passeroidea	ANCESTRAL SPECIES	17	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT00960000189770	ENSGT00390000006585	ENSGT00390000003044	ENSGT00940000158257	ENSGT01040000241829	ENSGT00990000204304	ENSGT01030000235537	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.c.a.e	ENSGT00940000163363.e.a.b.c.a.f.a	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00390000004877	ENSGT00940000163363.e.a.b.c.a.f.b	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00900000141128
Common canary	MODERN SPECIES	14	RSPRY1 (ENSSCAG00000006112)	ARL2BP (ENSSCAG00000006104)	PLLP (ENSSCAG00000006101)	THAP11 (ENSSCAG00000006098)	ENSSCAG00000006088	RANBP10 (ENSSCAG00000006066)	ENSSCAG00000006055	ENSSCAG00000006050	ENSSCAG00000006045	ENSSCAG00000006043	NUTF2 (ENSSCAG00000006042)	EDC4 (ENSSCAG00000006037)	PSKH1 (ENSSCAG00000006033)	CTRL (ENSSCAG00000006017)	EXOC3L1 (ENSSCAG00000006010) #21	E2F4 (ENSSCAG00000006003) #22	ELMO3 (ENSSCAG00000005985) #23	LCAT (ENSSCAG00000005959)	ENSSCAG00000005936	ENSSCAG00000005913	ENSSCAG00000005904	RIPOR1 (ENSSCAG00000005842) #36	CTCF (ENSSCAG00000005818) #37	ENSSCAG00000005809	AARS1 (ENSSCAG00000005799)	ENSSCAG00000005796	ENSSCAG00000005792	ZDHHC1 (ENSSCAG00000005790) #32	TPPP3 (ENSSCAG00000005787) #31	PLEKHG4 (ENSSCAG00000005782) #28	SLC9A5 (ENSSCAG00000005773) #27
Zebra finch	MODERN SPECIES	2	PSME3IP1 (ENSTGUG00000005173)	RSPRY1 (ENSTGUG00000005197)	ARL2BP (ENSTGUG00000005238)	PLLP (ENSTGUG00000005247)	ENSTGUG00000023133	ENSTGUG00000026335	RANBP10 (ENSTGUG00000005262)	ENSTGUG00000019972	ENSTGUG00000024320	NUTF2 (ENSTGUG00000028608)	EDC4 (ENSTGUG00000005312)	NRN1L (ENSTGUG00000022742)	PSKH1 (ENSTGUG00000028925)	CTRL (ENSTGUG00000005352)	EXOC3L1 (ENSTGUG00000005376) #21	E2F4 (ENSTGUG00000005417) #22	TMEM208 (ENSTGUG00000005504) #25	MATCAP1 (ENSTGUG00000005512) #20	LCAT (ENSTGUG00000005519)	ENSTGUG00000005554	ENSTGUG00000005564	RIPOR1 (ENSTGUG00000005594) #36	CTCF (ENSTGUG00000005603) #37	ENSTGUG00000005680	ENSTGUG00000024972	ENSTGUG00000029449	AARS1 (ENSTGUG00000005683)	EXOSC6 (ENSTGUG00000020155)	ENSTGUG00000005736	ENSTGUG00000005749	ZDHHC1 (ENSTGUG00000005755) #32
Medium ground finch	MODERN SPECIES	46	CPNE2 (ENSGFOG00000012046)	PSME3IP1 (ENSGFOG00000012040)	RSPRY1 (ENSGFOG00000012036)	ARL2BP (ENSGFOG00000012029)	PLLP (ENSGFOG00000012023)	ENSGFOG00000012016	RANBP10 (ENSGFOG00000012002)	ENSGFOG00000011996	ENSGFOG00000011994	ENSGFOG00000011991	NUTF2 (ENSGFOG00000011984)	EDC4 (ENSGFOG00000011633)	PSKH1 (ENSGFOG00000011543)	CTRL (ENSGFOG00000011519)	EXOC3L1 (ENSGFOG00000011493) #21	E2F4 (ENSGFOG00000011476) #22	ELMO3 (ENSGFOG00000011458) #23	TMEM208 (ENSGFOG00000011442) #25	LCAT (ENSGFOG00000011433)	ENSGFOG00000011407	ENSGFOG00000011394	ENSGFOG00000011387	RIPOR1 (ENSGFOG00000011363) #36	CTCF (ENSGFOG00000011352) #37	ENSGFOG00000011344	ENSGFOG00000011339	ENSGFOG00000011286	AARS1 (ENSGFOG00000011273)	ENSGFOG00000011266	ENSGFOG00000011264	ZDHHC1 (ENSGFOG00000011261) #32
Flycatcher	MODERN SPECIES	2	ARL2BP (ENSFALG00000007012)	PLLP (ENSFALG00000007017)	THAP11 (ENSFALG00000024324)	ENSFALG00000007027	ENSFALG00000027277	ENSFALG00000007031	ENSFALG00000023054	ENSFALG00000023954	ENSFALG00000028922	ENSFALG00000007051	NUTF2 (ENSFALG00000028610)	EDC4 (ENSFALG00000007060)	PSKH1 (ENSFALG00000007063)	CTRL (ENSFALG00000007067)	EXOC3L1 (ENSFALG00000007076) #21	E2F4 (ENSFALG00000007077) #22	ELMO3 (ENSFALG00000007082) #23	TMEM208 (ENSFALG00000007048) #25	ENSFALG00000024408 #20	ENSFALG00000007104	ENSFALG00000024685	ENSFALG00000025252	ENSFALG00000025850	ENSFALG00000007110	ENSFALG00000007123	RIPOR1 (ENSFALG00000007138) #36	CTCF (ENSFALG00000007163) #37	CARMIL2 (ENSFALG00000007174)	ENSFALG00000023290	ENSFALG00000007194	ENSFALG00000007196
Neognathae_c	ANCESTRAL SPECIES	18	ENSGT00940000157894	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT01030000235537	ENSGT01040000241829	ENSGT00940000158257	ENSGT00940000165060	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.c.a	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00940000161003	ENSGT00390000004877	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00900000141128	ENSGT00940000165483.c
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	4	ENSSHBG00005000077	ENSSHBG00005000067	ENSSHBG00005000059	ENSSHBG00005000057	ENSSHBG00005000042	ENSSHBG00005000034	ENSSHBG00005000016	ENSSHBG00005019748	ENSSHBG00005019731	ENSSHBG00005019719	ENSSHBG00005019712	ENSSHBG00005019703	ENSSHBG00005019698	ENSSHBG00005019695	ENSSHBG00005019162	ENSSHBG00005019101 #22	ENSSHBG00005019095
Kakapo	MODERN SPECIES	19	ENSSHBG00005002187	ENSSHBG00005002202	MMP15 (ENSSHBG00005002218)	CFAP20 (ENSSHBG00005002228)	CSNK2A2 (ENSSHBG00005002239)	GINS3 (ENSSHBG00005002255)	ENSSHBG00005002274	ENSSHBG00005002309	ENSSHBG00005002327	NUTF2 (ENSSHBG00005002342)	ENSSHBG00005002366	NRN1L (ENSSHBG00005002390)	PSKH1 (ENSSHBG00005002407)	CTRL (ENSSHBG00005002475)	EXOC3L1 (ENSSHBG00005002597) #21	ENSSHBG00005002629 #22	ELMO3 (ENSSHBG00005002685) #23	TMEM208 (ENSSHBG00005002747) #25	MATCAP1 (ENSSHBG00005002778) #20	ENSSHBG00005002817	ENSSHBG00005002840	ENSSHBG00005002853	ENSSHBG00005002867	ENSSHBG00005002877	ENSSHBG00005002893	ENSSHBG00005002924 #36	ENSSHBG00005002965 #37	ENSSHBG00005003002	ENSSHBG00005003042	ZDHHC1 (ENSSHBG00005003067) #32	TPPP3 (ENSSHBG00005003086) #31
Golden eagle	MODERN SPECIES	25	ARL2BP (ENSACCG00020008127)	PLLP (ENSACCG00020008120)	ENSACCG00020008110	ENSACCG00020008105	ENSACCG00020008096	RANBP10 (ENSACCG00020008087)	ENSACCG00020008068	CENPT (ENSACCG00020008059)	ENSACCG00020008051	NUTF2 (ENSACCG00020008042)	EDC4 (ENSACCG00020008019)	NRN1L (ENSACCG00020008004)	PSKH1 (ENSACCG00020007994)	CTRL (ENSACCG00020007972)	EXOC3L1 (ENSACCG00020007949) #21	E2F4 (ENSACCG00020007936) #22	ELMO3 (ENSACCG00020007906) #23	TMEM208 (ENSACCG00020007881) #25	MATCAP1 (ENSACCG00020007867) #20	LCAT (ENSACCG00020003807)	ENSACCG00020003787	ENSACCG00020003771	RIPOR1 (ENSACCG00020003680) #36	CTCF (ENSACCG00020003584) #37	CARMIL2 (ENSACCG00020003558)	ENSACCG00020003524	ENSACCG00020003495	ENSACCG00020003450	AARS1 (ENSACCG00020003404)	EXOSC6 (ENSACCG00020003376)	ENSACCG00020003337
Galloanserae	ANCESTRAL SPECIES	12	ENSGT00940000157894	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT01030000235537	ENSGT00990000204304	ENSGT00940000158257	ENSGT00940000165060	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.d	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00940000161003	ENSGT00390000004877	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00900000141128	ENSGT00940000165483.c
Anatidae	ANCESTRAL SPECIES	44	ENSGT00940000157894	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT01030000235537	ENSGT01030000238340	ENSGT00940000158257	ENSGT00940000165060	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.d	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00940000161003	ENSGT00390000004877	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00900000141128	ENSGT00940000165483.c
Duck	MODERN SPECIES	3470															EXOC3L1 (ENSAPLG00000005428) #21	ENSAPLG00000023922 #22	ELMO3 (ENSAPLG00000005842) #23
Pink-footed goose	MODERN SPECIES	28	ARL2BP (ENSABRG00000006397)	PLLP (ENSABRG00000006367)	ENSABRG00000006353	ENSABRG00000006350	ENSABRG00000006339	RANBP10 (ENSABRG00000006142)	ENSABRG00000006098	CENPT (ENSABRG00000006074)	THAP11 (ENSABRG00000006069)	NUTF2 (ENSABRG00000006063)	EDC4 (ENSABRG00000004784)	NRN1L (ENSABRG00000004644)	PSKH1 (ENSABRG00000004618)	CTRL (ENSABRG00000004597)	EXOC3L1 (ENSABRG00000004552) #21	E2F4 (ENSABRG00000004516) #22	ELMO3 (ENSABRG00000004359) #23	TMEM208 (ENSABRG00000004312) #25	MATCAP1 (ENSABRG00000004297) #20	LCAT (ENSABRG00000004284)	ENSABRG00000004281	ENSABRG00000004245	ENSABRG00000004233	RIPOR1 (ENSABRG00000004192) #36	CTCF (ENSABRG00000004166) #37	CARMIL2 (ENSABRG00000004070)	ENSABRG00000004051	ENSABRG00000003948	AARS1 (ENSABRG00000003899)	EXOSC6 (ENSABRG00000003869)	ENSABRG00000003864
Phasianidae	ANCESTRAL SPECIES	12	ENSGT00940000157894	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT01030000235537	ENSGT00990000204304	ENSGT00940000158257	ENSGT00940000165060	ENSGT00390000003044	ENSGT00390000006585	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.d.c	ENSGT00940000163363.e.a.b.d.d.b	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00940000161003	ENSGT00390000004877	ENSGT00940000163363.e.a.b.d.d.a	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A
Japanese quail	MODERN SPECIES	2	ARL2BP (ENSCJPG00005012011)	ENSCJPG00005012010	PLLP (ENSCJPG00005012007)	ENSCJPG00005012004	ENSCJPG00005012002	RANBP10 (ENSCJPG00005012001)	ENSCJPG00005011967	CENPT (ENSCJPG00005011965)	THAP11 (ENSCJPG00005011962)	NUTF2 (ENSCJPG00005011960)	EDC4 (ENSCJPG00005011956)	NRN1L (ENSCJPG00005011955)	PSKH1 (ENSCJPG00005011954)	CTRL (ENSCJPG00005011950)	EXOC3L1 (ENSCJPG00005011949) #21	E2F4 (ENSCJPG00005011947) #22	ELMO3 (ENSCJPG00005011622) #23	TMEM208 (ENSCJPG00005011621) #25	MATCAP1 (ENSCJPG00005011614) #20	LCAT (ENSCJPG00005011612)	ENSCJPG00005011600	ENSCJPG00005011599	ENSCJPG00005011598	CTCF (ENSCJPG00005011570) #37	CARMIL2 (ENSCJPG00005011565)	ENSCJPG00005011564	ENSCJPG00005011559	AARS1 (ENSCJPG00005011326)	EXOSC6 (ENSCJPG00005011324)	ENSCJPG00005011321	ZDHHC1 (ENSCJPG00005011314) #32
Phasianidae_b	ANCESTRAL SPECIES	14	ENSGT00940000157894	ENSGT00390000015052.j	ENSGT00940000156011	ENSGT01100000263482.F	ENSGT00990000204304	ENSGT00940000158257	ENSGT00940000165060	ENSGT00390000003044	ENSGT00960000189770	ENSGT00510000047030	ENSGT00510000047791	ENSGT00530000063853.a.b	ENSGT00940000157041.a	ENSGT00940000154494.b	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000004417.b #20	ENSGT00940000160052	ENSGT00940000163363.e.a.b.d.c	ENSGT00940000163363.e.a.a.b	ENSGT00940000153717.b #36	ENSGT00940000156672 #37	ENSGT00940000161003	ENSGT00390000004877	ENSGT00940000163363.e.a.b.d.d.a	ENSGT00940000166017	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00900000141128
Chicken	MODERN SPECIES	2	ARL2BP (ENSGALG00010025800)	ENSGALG00010022176	PLLP (ENSGALG00010022180)	CX3CL1 (ENSGALG00010022202)	CCL17 (ENSGALG00010022208)	RANBP10 (ENSGALG00010021798)	ENSGALG00010021831	CENPT (ENSGALG00010021841)	ENSGALG00010021853	NUTF2 (ENSGALG00010021887)	EDC4 (ENSGALG00010021908)	NRN1L (ENSGALG00010021924)	PSKH1 (ENSGALG00010021951)	CTRL (ENSGALG00010022092)	EXOC3L1 (ENSGALG00010022104) #21	E2F4 (ENSGALG00010022115) #22	ELMO3 (ENSGALG00010022129) #23	TMEM208 (ENSGALG00010022142) #25	MATCAP1 (ENSGALG00010022143) #20	LCAT (ENSGALG00010022401)	ENSGALG00010022479	ENSGALG00010025870	ENSGALG00010022509	RIPOR1 (ENSGALG00010022571) #36	CTCF (ENSGALG00010022627) #37	CARMIL2 (ENSGALG00010022652)	ENSGALG00010022666	ENSGALG00010022500	ENSGALG00010022676	AARS1 (ENSGALG00010021722)	EXOSC6 (ENSGALG00010025438)
Turkey	DUPLICATION
Turkey	MODERN SPECIES	4	ENSMGAG00000017254 #31	ENSMGAG00000018186 #32	ENSMGAG00000002326	ENSMGAG00000002038	ENSMGAG00000002365	ENSMGAG00000002145	ENSMGAG00000002200 #37	ENSMGAG00000002253 #36	ENSMGAG00000002293	ENSMGAG00000002344	ENSMGAG00000002310	ENSMGAG00000002421	ENSMGAG00000002386 #25	ENSMGAG00000002377 #20	ELMO3 (ENSMGAG00000002446) #23	ENSMGAG00000021267 #22	ENSMGAG00000002517 #22	ENSMGAG00000002634	ENSMGAG00000002599	ENSMGAG00000002565 #21	ENSMGAG00000017751	ENSMGAG00000002644	ENSMGAG00000002707	ENSMGAG00000020886	ENSMGAG00000002744	ENSMGAG00000022142	ENSMGAG00000002741	ENSMGAG00000002787	ENSMGAG00000002773	ENSMGAG00000002760	RSPRY1 (ENSMGAG00000002807)
Turkey	MODERN SPECIES	4	ENSMGAG00000018186 #32	ENSMGAG00000002326	ENSMGAG00000002038	ENSMGAG00000002365	ENSMGAG00000002145	ENSMGAG00000002200 #37	ENSMGAG00000002253 #36	ENSMGAG00000002293	ENSMGAG00000002344	ENSMGAG00000002310	ENSMGAG00000002421	ENSMGAG00000002386 #25	ENSMGAG00000002377 #20	ELMO3 (ENSMGAG00000002446) #23	ENSMGAG00000021267 #22	ENSMGAG00000002517 #22	ENSMGAG00000002634	ENSMGAG00000002599	ENSMGAG00000002565 #21	ENSMGAG00000017751	ENSMGAG00000002644	ENSMGAG00000002707	ENSMGAG00000020886	ENSMGAG00000002744	ENSMGAG00000022142	ENSMGAG00000002741	ENSMGAG00000002787	ENSMGAG00000002773	ENSMGAG00000002760	RSPRY1 (ENSMGAG00000002807)	ENSMGAG00000002881
Anura	ANCESTRAL SPECIES	64													ENSGT00940000165986	ENSGT00940000160052	ENSGT00940000158705	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00390000008749.f	ENSGT01030000234613.a.b #21	ENSGT00390000004417.b #20	ENSGT00390000011417	ENSGT00390000009328	ENSGT00950000183100.A	ENSGT00940000160143	ENSGT00730000110960.a.b	ENSGT00940000160843	ENSGT00940000156038.b.a	ENSGT00390000004913	ENSGT00940000157918	ENSGT00940000154022.a.a
Frog	MODERN SPECIES	4	mcoln3 (ENSXETG00000008633)	dnai3 (ENSXETG00000008630)	syde2 (ENSXETG00000008629)	bcl10 (ENSXETG00000003096)	ddah1 (ENSXETG00000047913)	ccn1 (ENSXETG00000003094)	znhit6 (ENSXETG00000037309)	col24a1 (ENSXETG00000003092)	ENSXETG00000044401	odf2l (ENSXETG00000003090)	clca2 (ENSXETG00000003088)	ano10l (ENSXETG00000033689)	lcat (ENSXETG00000003085)	ENSXETG00000035261	ldhd (ENSXETG00000031980)	e2f4 (ENSXETG00000003083) #22	elmo3 (ENSXETG00000013823) #23	usp1 (ENSXETG00000013819)	tmem208 (ENSXETG00000033520) #25	anln (ENSXETG00000039411)	exoc3l1 (ENSXETG00000013799) #21	kiaa0895l (ENSXETG00000013796) #20	usb1 (ENSXETG00000013795)	setd6 (ENSXETG00000013793)	ciapin1 (ENSXETG00000013788)	coq9 (ENSXETG00000025042)	polr2c (ENSXETG00000013784)	dok4 (ENSXETG00000013782)	ccdc102a (ENSXETG00000013779)	ADGRG1 (ENSXETG00000013764)	zpd (ENSXETG00000013767)
Coelacanth	MODERN SPECIES	895														ENSLACG00000005953	ENSLACG00000007440	E2F4 (ENSLACG00000010977) #22	ELMO3 (ENSLACG00000012363) #23	ENSLACG00000013406 #24	ENSLACG00000014135