Mammalia	ANCESTRAL SPECIES	13	ENSGT00940000160687 #7	ENSGT00940000165234	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000163363	ENSGT00940000153717.b #37
Theria	ANCESTRAL SPECIES	17	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000163363	ENSGT00940000153717.b #37
Eutheria	ANCESTRAL SPECIES	19	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000153793 #11	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Pecora	ANCESTRAL SPECIES	4	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Yarkand deer	MODERN SPECIES	27	PDP2 (ENSCHYG00000022241) #7	CDH16 (ENSCHYG00000022298) #8	RRAD (ENSCHYG00000022736) #9	ENSCHYG00000022775 #10	CES2 (ENSCHYG00000022832) #11	CES3 (ENSCHYG00000022898) #12	CES4A (ENSCHYG00000023100) #13	CBFB (ENSCHYG00000023398) #14	PHAF1 (ENSCHYG00000023443) #15	B3GNT9 (ENSCHYG00000023536) #16	TRADD (ENSCHYG00000023549) #17	ENSCHYG00000023612 #18	NOL3 (ENSCHYG00000023759) #19	MATCAP1 (ENSCHYG00000023823) #20	EXOC3L1 (ENSCHYG00000023914) #21	E2F4 (ENSCHYG00000023962) #22	ELMO3 (ENSCHYG00000024035) #23	ENSCHYG00000024305 #24	TMEM208 (ENSCHYG00000024345) #25	FHOD1 (ENSCHYG00000024493) #26	SLC9A5 (ENSCHYG00000024982) #27	ENSCHYG00000008855 #28	KCTD19 (ENSCHYG00000009258) #29	LRRC36 (ENSCHYG00000009424) #30	ENSCHYG00000009661 #31	TPPP3 (ENSCHYG00000009692) #32	ZDHHC1 (ENSCHYG00000009775) #33	HSD11B2 (ENSCHYG00000009995) #34	ATP6V0D1 (ENSCHYG00000010102) #35	AGRP (ENSCHYG00000010393) #36	RIPOR1 (ENSCHYG00000010451) #37
Percora_a	ANCESTRAL SPECIES	4	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Siberian musk deer	MODERN SPECIES	125	CDH16 (ENSMMSG00000003008) #8	RRAD (ENSMMSG00000002919) #9	CIAO2B (ENSMMSG00000002906) #10	CES2 (ENSMMSG00000002881) #11	CES3 (ENSMMSG00000002817) #12	CES4A (ENSMMSG00000002458) #13	CBFB (ENSMMSG00000002381) #14	PHAF1 (ENSMMSG00000002333) #15	B3GNT9 (ENSMMSG00000002307) #16	TRADD (ENSMMSG00000002296) #17	FBXL8 (ENSMMSG00000002277)	HSF4 (ENSMMSG00000002260) #18	NOL3 (ENSMMSG00000002238) #19	MATCAP1 (ENSMMSG00000002222) #20	EXOC3L1 (ENSMMSG00000002185) #21	E2F4 (ENSMMSG00000002147) #22	ELMO3 (ENSMMSG00000002100) #23	ENSMMSG00000002071 #24	ENSMMSG00000002065	TMEM208 (ENSMMSG00000002038) #25	FHOD1 (ENSMMSG00000002016) #26	SLC9A5 (ENSMMSG00000001982) #27	PLEKHG4 (ENSMMSG00000001910) #28	KCTD19 (ENSMMSG00000001864) #29	LRRC36 (ENSMMSG00000001751) #30	TPPP3 (ENSMMSG00000001723) #32	ZDHHC1 (ENSMMSG00000001705) #33	HSD11B2 (ENSMMSG00000001687) #34	ATP6V0D1 (ENSMMSG00000001667) #35	AGRP (ENSMMSG00000001658) #36	RIPOR1 (ENSMMSG00000001629) #37
Bovidae	ANCESTRAL SPECIES	4	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Bovinae	ANCESTRAL SPECIES	3	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Bos	ANCESTRAL SPECIES	4	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637.p #24	ENSGT00900000143253	ENSGT00940000160637.o #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36
Bos_a	ANCESTRAL SPECIES	22	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637.p #24	ENSGT00900000143253	ENSGT00940000160637.o #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29
Domestic yak	MODERN SPECIES	12	CDH16 (ENSBGRG00000026897) #8	RRAD (ENSBGRG00000026896) #9	ENSBGRG00000026895 #10	CES2 (ENSBGRG00000026894) #11	CES3 (ENSBGRG00000026893) #12	CES4A (ENSBGRG00000026891) #13	CBFB (ENSBGRG00000026888) #14	PHAF1 (ENSBGRG00000026886) #15	B3GNT9 (ENSBGRG00000026884) #16	TRADD (ENSBGRG00000026883) #17	FBXL8 (ENSBGRG00000026881)	HSF4 (ENSBGRG00000026879) #18	NOL3 (ENSBGRG00000026877) #19	MATCAP1 (ENSBGRG00000026876) #20	EXOC3L1 (ENSBGRG00000026874) #21	E2F4 (ENSBGRG00000026873) #22	ELMO3 (ENSBGRG00000026869) #23	ENSBGRG00000026868 #24	ENSBGRG00000026867 #24	TMEM208 (ENSBGRG00000026865) #25	ENSBGRG00000026861 #26	SLC9A5 (ENSBGRG00000026860) #27	PLEKHG4 (ENSBGRG00000026856) #28	KCTD19 (ENSBGRG00000026853) #29	ENSBGRG00000026851	LRRC36 (ENSBGRG00000026835) #30	TPPP3 (ENSBGRG00000026802) #32	ZDHHC1 (ENSBGRG00000026787) #33	HSD11B2 (ENSBGRG00000026764) #34	ATP6V0D1 (ENSBGRG00000026746) #35	AGRP (ENSBGRG00000026735) #36
Wild yak	MODERN SPECIES	818	CDH16 (ENSBMUG00000004891) #8	RRAD (ENSBMUG00000004672) #9	ENSBMUG00000004656 #10	CES2 (ENSBMUG00000004631) #11	CES3 (ENSBMUG00000004603) #12	CES4A (ENSBMUG00000004549) #13	ENSBMUG00000004501 #14	PHAF1 (ENSBMUG00000004491) #15	B3GNT9 (ENSBMUG00000004470) #16	TRADD (ENSBMUG00000004465) #17	FBXL8 (ENSBMUG00000004457)	HSF4 (ENSBMUG00000004436) #18	ENSBMUG00000004421 #19	MATCAP1 (ENSBMUG00000004402) #20	EXOC3L1 (ENSBMUG00000004386) #21	E2F4 (ENSBMUG00000004337) #22	ELMO3 (ENSBMUG00000004292) #23	ENSBMUG00000004260 #24	ENSBMUG00000004246	TMEM208 (ENSBMUG00000004238) #25	FHOD1 (ENSBMUG00000004193) #26	ENSBMUG00000004095 #26	SLC9A5 (ENSBMUG00000004079) #27	PLEKHG4 (ENSBMUG00000004054) #28	KCTD19 (ENSBMUG00000003932) #29	ENSBMUG00000003916	LRRC36 (ENSBMUG00000003891) #30	TPPP3 (ENSBMUG00000003823) #32	ZDHHC1 (ENSBMUG00000003794) #33	HSD11B2 (ENSBMUG00000003730) #34	ATP6V0D1 (ENSBMUG00000003696) #35
Bos_b	ANCESTRAL SPECIES		ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637.p #24	ENSGT00940000160637.o #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00940000156218.b	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36
Cow	MODERN SPECIES	9	CDH16 (ENSBTAG00000009585) #8	RRAD (ENSBTAG00000013929) #9	CIAO2B (ENSBTAG00000013931) #10	CES2 (ENSBTAG00000005093) #11	CES3 (ENSBTAG00000040413) #12	CES4A (ENSBTAG00000038325) #13	CBFB (ENSBTAG00000016103) #14	PHAF1 (ENSBTAG00000005058) #15	B3GNT9 (ENSBTAG00000049665) #16	TRADD (ENSBTAG00000012642) #17	FBXL8 (ENSBTAG00000023632)	HSF4 (ENSBTAG00000003514) #18	NOL3 (ENSBTAG00000003519) #19	MATCAP1 (ENSBTAG00000003521) #20	EXOC3L1 (ENSBTAG00000012035) #21	E2F4 (ENSBTAG00000012063) #22	ELMO3 (ENSBTAG00000001286) #23	ENSBTAG00000001287 #24	TMEM208 (ENSBTAG00000002327) #25	FHOD1 (ENSBTAG00000032427) #26	SLC9A5 (ENSBTAG00000039190) #27	PLEKHG4 (ENSBTAG00000021570) #28	KCTD19 (ENSBTAG00000032396) #29	LRRC36 (ENSBTAG00000001838) #30	ENSBTAG00000046690	TPPP3 (ENSBTAG00000019822) #32	ZDHHC1 (ENSBTAG00000038134) #33	HSD11B2 (ENSBTAG00000005685) #34	ATP6V0D1 (ENSBTAG00000014553) #35	AGRP (ENSBTAG00000014556) #36	RIPOR1 (ENSBTAG00000008860) #37
Hybrid Bos Indicus	MODERN SPECIES	9	CDH16 (ENSBIXG00005020523) #8	RRAD (ENSBIXG00005020587) #9	CIAO2B (ENSBIXG00005003480) #10	CES2 (ENSBIXG00005020621) #11	CES3 (ENSBIXG00005003507) #12	CES4A (ENSBIXG00005020830) #13	CBFB (ENSBIXG00005003530) #14	PHAF1 (ENSBIXG00005020907) #15	B3GNT9 (ENSBIXG00005005675) #16	TRADD (ENSBIXG00005020967) #17	FBXL8 (ENSBIXG00005020996)	HSF4 (ENSBIXG00005021067) #18	ENSBIXG00005021092 #19	MATCAP1 (ENSBIXG00005021118) #20	EXOC3L1 (ENSBIXG00005005746) #21	E2F4 (ENSBIXG00005021168) #22	ELMO3 (ENSBIXG00005021218) #23	ENSBIXG00005021263 #24	TMEM208 (ENSBIXG00005021309) #25	FHOD1 (ENSBIXG00005003605) #26	SLC9A5 (ENSBIXG00005021398) #27	PLEKHG4 (ENSBIXG00005021557) #28	KCTD19 (ENSBIXG00005021614) #29	ENSBIXG00005003649	LRRC36 (ENSBIXG00005021780) #30	TPPP3 (ENSBIXG00005021813) #32	ZDHHC1 (ENSBIXG00005021870) #33	HSD11B2 (ENSBIXG00005021881) #34	ATP6V0D1 (ENSBIXG00005003697) #35	AGRP (ENSBIXG00005021957) #36	RIPOR1 (ENSBIXG00005022104) #37
American bison	DUPLICATION
American bison	MODERN SPECIES	3150	COL14A1 (ENSBBBG00000014949)	DEPTOR (ENSBBBG00000000969)	DSCC1 (ENSBBBG00000000990)	TAF2 (ENSBBBG00000001006)	ENPP2 (ENSBBBG00000001054)	ENSBBBG00000001221	SLC10A5 (ENSBBBG00000001243)	ZFAND1 (ENSBBBG00000003681)	CHMP4C (ENSBBBG00000014880)	SNX16 (ENSBBBG00000014866)	ENSBBBG00000003657	RALYL (ENSBBBG00000002824)	ENSBBBG00000014729	ENSBBBG00000014705	LRRCC1 (ENSBBBG00000014695)	ENSBBBG00000014664 #22	ENSBBBG00000014657	ENSBBBG00000014641	CA13 (ENSBBBG00000014615)	ENSBBBG00000014608	ENSBBBG00000014601	ENSBBBG00000014595	ENSBBBG00000009132	CA3 (ENSBBBG00000009126)	CA2 (ENSBBBG00000003416)	ENSBBBG00000003411	ATP6V0D2 (ENSBBBG00000014549) ##35	ENSBBBG00000014538	WWP1 (ENSBBBG00000003399)	RMDN1 (ENSBBBG00000003379)
American bison	MODERN SPECIES	3211	RRAD (ENSBBBG00000014738) #9	CIAO2B (ENSBBBG00000014743) #10	CES2 (ENSBBBG00000014778) #11	ENSBBBG00000014790 #12	ENSBBBG00000014799 #12	CES4A (ENSBBBG00000007359) #13	ENSBBBG00000003663 #14	PHAF1 (ENSBBBG00000014888) #15	B3GNT9 (ENSBBBG00000003675) #16	TRADD (ENSBBBG00000007361) #17	FBXL8 (ENSBBBG00000014921)	HSF4 (ENSBBBG00000001199) #18	NOL3 (ENSBBBG00000001188) #19	MATCAP1 (ENSBBBG00000001162) #20	EXOC3L1 (ENSBBBG00000001140) #21	E2F4 (ENSBBBG00000001117) #22	ELMO3 (ENSBBBG00000000997) #23	ENSBBBG00000000951 #24	ENSBBBG00000000949	TMEM208 (ENSBBBG00000000934) #25	ENSBBBG00000000858 #26	ENSBBBG00000000848 #26	SLC9A5 (ENSBBBG00000000822) #27	PLEKHG4 (ENSBBBG00000014974) #28	KCTD19 (ENSBBBG00000014992) #29	ENSBBBG00000014995	LRRC36 (ENSBBBG00000003737) #30	TPPP3 (ENSBBBG00000015070) #32	ZDHHC1 (ENSBBBG00000015085) #33	HSD11B2 (ENSBBBG00000003742) #34	ATP6V0D1 (ENSBBBG00000015106) #35
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Goat	MODERN SPECIES	9	CDH16 (ENSCHIG00000023982) #8	RRAD (ENSCHIG00000014464) #9	CIAO2B (ENSCHIG00000013136) #10	CES2 (ENSCHIG00000019303) #11	CES3 (ENSCHIG00000024208) #12	CES4A (ENSCHIG00000016586) #13	CBFB (ENSCHIG00000020674) #14	PHAF1 (ENSCHIG00000020303) #15	B3GNT9 (ENSCHIG00000014321) #16	TRADD (ENSCHIG00000024921) #17	FBXL8 (ENSCHIG00000015480)	HSF4 (ENSCHIG00000003853) #18	ENSCHIG00000017201 #19	MATCAP1 (ENSCHIG00000015211) #20	EXOC3L1 (ENSCHIG00000024506) #21	E2F4 (ENSCHIG00000016663) #22	ELMO3 (ENSCHIG00000026708) #23	ENSCHIG00000019793 #24	TMEM208 (ENSCHIG00000025511) #25	FHOD1 (ENSCHIG00000025985) #26	SLC9A5 (ENSCHIG00000010558) #27	PLEKHG4 (ENSCHIG00000014998) #28	KCTD19 (ENSCHIG00000018050) #29	LRRC36 (ENSCHIG00000011267) #30	TPPP3 (ENSCHIG00000021248) #32	ZDHHC1 (ENSCHIG00000009629) #33	HSD11B2 (ENSCHIG00000004358) #34	ATP6V0D1 (ENSCHIG00000017558) #35	AGRP (ENSCHIG00000025951) #36	RIPOR1 (ENSCHIG00000008773) #37	CTCF (ENSCHIG00000013690)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	19	THAP2 (ENSOARG00020002399)	TMEM19 (ENSOARG00020002407)	RAB21 (ENSOARG00020002440)	TBC1D15 (ENSOARG00020002469)	TPH2 (ENSOARG00020002610)	ENSOARG00020002632	TRHDE (ENSOARG00020002645)	ENSOARG00020002666	NSMCE1 (ENSOARG00020002686)	KDM8 (ENSOARG00020002713)	ENSOARG00020002731	ATXN7L3B (ENSOARG00020002735)	KCNC2 (ENSOARG00020002747)	CAPS2 (ENSOARG00020002788)	GLIPR1L1 (ENSOARG00020002811)	ENSOARG00020002828 #22	GLIPR1 (ENSOARG00020002870)	KRR1 (ENSOARG00020002893)	PHLDA1 (ENSOARG00020002913)	ENSOARG00020002933	OSBPL8 (ENSOARG00020003030)	BBS10 (ENSOARG00020003354)	ENSOARG00020003381	ZDHHC17 (ENSOARG00020003403)	CSRP2 (ENSOARG00020003468)	E2F7 (ENSOARG00020003529)	NAV3 (ENSOARG00020003813)	SYT1 (ENSOARG00020005626)	PAWR (ENSOARG00020005665)	PPP1R12A (ENSOARG00020005817)	PTPRQ (ENSOARG00020008080)
Rambouillet Sheep	MODERN SPECIES	5	CDH16 (ENSOARG00020017267) #8	RRAD (ENSOARG00020017701) #9	CIAO2B (ENSOARG00020017741) #10	CES2 (ENSOARG00020017788) #11	CES3 (ENSOARG00020017918) #12	CES4A (ENSOARG00020018190) #13	CBFB (ENSOARG00020018510) #14	PHAF1 (ENSOARG00020018589) #15	B3GNT9 (ENSOARG00020018774) #16	TRADD (ENSOARG00020018788) #17	FBXL8 (ENSOARG00020018825)	HSF4 (ENSOARG00020018866) #18	ENSOARG00020018928 #19	MATCAP1 (ENSOARG00020018962) #20	EXOC3L1 (ENSOARG00020019062) #21	ENSOARG00020019148 #22	ELMO3 (ENSOARG00020019220) #23	ENSOARG00020019801 #24	TMEM208 (ENSOARG00020019829) #25	SLC9A5 (ENSOARG00020020928) #27	PLEKHG4 (ENSOARG00020021085) #28	KCTD19 (ENSOARG00020021493) #29	LRRC36 (ENSOARG00020021598) #30	TPPP3 (ENSOARG00020021942) #32	ZDHHC1 (ENSOARG00020021964) #33	HSD11B2 (ENSOARG00020022068) #34	ATP6V0D1 (ENSOARG00020022126) #35	AGRP (ENSOARG00020022169) #36	RIPOR1 (ENSOARG00020022218) #37	CTCF (ENSOARG00020022476)	CARMIL2 (ENSOARG00020022572)
Cetacea	ANCESTRAL SPECIES	6	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a.n #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	7	SUPV3L1 (ENSBMSG00010022325)	HKDC1 (ENSBMSG00010022316)	HK1 (ENSBMSG00010022300)	TACR2 (ENSBMSG00010022290)	TSPAN15 (ENSBMSG00010022282)	NEUROG3 (ENSBMSG00010022279)	FAM241B (ENSBMSG00010022278)	COL13A1 (ENSBMSG00010018272)	MACROH2A2 (ENSBMSG00010017113)	AIFM2 (ENSBMSG00010017088)	TYSND1 (ENSBMSG00010017063)	SAR1A (ENSBMSG00010017041)	ENSBMSG00010017012	NPFFR1 (ENSBMSG00010016996)	LRRC20 (ENSBMSG00010016966)	ENSBMSG00010016948 #22	EIF4EBP2 (ENSBMSG00010016927)	NODAL (ENSBMSG00010016907)	PALD1 (ENSBMSG00010016880)	PRF1 (ENSBMSG00010016858)	ADAMTS14 (ENSBMSG00010016763)	TBATA (ENSBMSG00010016695)	SGPL1 (ENSBMSG00010016639)	UNC5B (ENSBMSG00010016561)	SLC29A3 (ENSBMSG00010016523)	VSIR (ENSBMSG00010016464)	CDH23 (ENSBMSG00010014850)	PSAP (ENSBMSG00010014455)	CHST3 (ENSBMSG00010014411)	ENSBMSG00010014391	SPOCK2 (ENSBMSG00010014327)
Blue whale	MODERN SPECIES	10	ENSBMSG00010015711	PDP2 (ENSBMSG00010015722) #7	CDH16 (ENSBMSG00010015858) #8	RRAD (ENSBMSG00010016627) #9	CIAO2B (ENSBMSG00010016650) #10	CES2 (ENSBMSG00010016703) #11	CBFB (ENSBMSG00010016805) #14	ENSBMSG00010016852 #15	B3GNT9 (ENSBMSG00010016876) #16	TRADD (ENSBMSG00010016899) #17	FBXL8 (ENSBMSG00010016923)	HSF4 (ENSBMSG00010016951) #18	NOL3 (ENSBMSG00010016979) #19	MATCAP1 (ENSBMSG00010017022) #20	EXOC3L1 (ENSBMSG00010017075) #21	ENSBMSG00010017137 #22	ELMO3 (ENSBMSG00010017180) #23	ENSBMSG00010017277 #24	TMEM208 (ENSBMSG00010017359) #25	FHOD1 (ENSBMSG00010017401) #26	SLC9A5 (ENSBMSG00010017437) #27	KCTD19 (ENSBMSG00010017657) #29	LRRC36 (ENSBMSG00010017738) #30	TPPP3 (ENSBMSG00010017825) #32	ZDHHC1 (ENSBMSG00010017851) #33	HSD11B2 (ENSBMSG00010017905) #34	ATP6V0D1 (ENSBMSG00010017928) #35	AGRP (ENSBMSG00010017977) #36	RIPOR1 (ENSBMSG00010018027) #37	CTCF (ENSBMSG00010018230)	CARMIL2 (ENSBMSG00010018294)
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.q #11	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a.n #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.q #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a.n #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Dolphin	MODERN SPECIES	1310	NAE1 (ENSTTRG00000010124)	CA7 (ENSTTRG00000010154)	PDP2 (ENSTTRG00000010159) #7	CDH16 (ENSTTRG00000010162) #8	RRAD (ENSTTRG00000010173) #9	CIAO2B (ENSTTRG00000010181) #10	ENSTTRG00000010185	CBFB (ENSTTRG00000010200) #14	PHAF1 (ENSTTRG00000010207) #15	TRADD (ENSTTRG00000010223) #17	FBXL8 (ENSTTRG00000010233)	HSF4 (ENSTTRG00000010241) #18	ENSTTRG00000010251 #19	MATCAP1 (ENSTTRG00000010254) #20	EXOC3L1 (ENSTTRG00000010260) #21	E2F4 (ENSTTRG00000010268) #22	ELMO3 (ENSTTRG00000010275) #23	ENSTTRG00000010287 #24
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.q #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a.n #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.q #11	ENSGT00940000155200 #12	ENSGT00940000153314.a.a	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a.n #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Beluga whale	MODERN SPECIES	12	RRAD (ENSDLEG00000002898) #9	FAM96B (ENSDLEG00000002890) #10	CES2 (ENSDLEG00000002869) #11	ENSDLEG00000002860 #12	ENSDLEG00000002849	ENSDLEG00000002836	PHAF1 (ENSDLEG00000002707) #15	B3GNT9 (ENSDLEG00000002671) #16	TRADD (ENSDLEG00000002663) #17	ENSDLEG00000002626	FBXL8 (ENSDLEG00000002619)	HSF4 (ENSDLEG00000002590) #18	NOL3 (ENSDLEG00000002571) #19	KIAA0895L (ENSDLEG00000002558) #20	EXOC3L1 (ENSDLEG00000002535) #21	E2F4 (ENSDLEG00000002500) #22	ELMO3 (ENSDLEG00000002444) #23	ENSDLEG00000002413 #24	TMEM208 (ENSDLEG00000002382) #25	FHOD1 (ENSDLEG00000001708) #26	SLC9A5 (ENSDLEG00000001295) #27	ENSDLEG00000001253 #28	ENSDLEG00000001229 #28	KCTD19 (ENSDLEG00000001198) #29	LRRC36 (ENSDLEG00000001147) #30	TPPP3 (ENSDLEG00000001125) #32	ZDHHC1 (ENSDLEG00000001103) #33	HSD11B2 (ENSDLEG00000001092) #34	ATP6V0D1 (ENSDLEG00000001081) #35	AGRP (ENSDLEG00000001071) #36	RIPOR1 (ENSDLEG00000000973) #37
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	311	SUPV3L1 (ENSMMNG00015018179)	HKDC1 (ENSMMNG00015018235)	HK1 (ENSMMNG00015018338)	TACR2 (ENSMMNG00015018482)	TSPAN15 (ENSMMNG00015018513)	NEUROG3 (ENSMMNG00015018559)	FAM241B (ENSMMNG00015018581)	COL13A1 (ENSMMNG00015019392)	MACROH2A2 (ENSMMNG00015021163)	AIFM2 (ENSMMNG00015021184)	TYSND1 (ENSMMNG00015021209)	SAR1A (ENSMMNG00015021225)	PPA1 (ENSMMNG00015021247)	NPFFR1 (ENSMMNG00015021258)	LRRC20 (ENSMMNG00015021275)	ENSMMNG00015021284 #22	EIF4EBP2 (ENSMMNG00015021294)	NODAL (ENSMMNG00015021300)	PALD1 (ENSMMNG00015021314)	PRF1 (ENSMMNG00015021328)	ADAMTS14 (ENSMMNG00015021357)	TBATA (ENSMMNG00015021388)	SGPL1 (ENSMMNG00015021410)	ENSMMNG00015021426	UNC5B (ENSMMNG00015021439)	SLC29A3 (ENSMMNG00015021469)	CDH23 (ENSMMNG00015021504)	C10orf105 (ENSMMNG00015021533)	VSIR (ENSMMNG00015021540)	PSAP (ENSMMNG00015021549)	ENSMMNG00015021560
Narwhal	MODERN SPECIES	296	CDH16 (ENSMMNG00015003293) #8	RRAD (ENSMMNG00015003240) #9	CIAO2B (ENSMMNG00015003223) #10	CES2 (ENSMMNG00015003204) #11	ENSMMNG00015003177 #12	ENSMMNG00015003160	CBFB (ENSMMNG00015003148) #14	PHAF1 (ENSMMNG00015003125) #15	B3GNT9 (ENSMMNG00015003108) #16	TRADD (ENSMMNG00015003080) #17	FBXL8 (ENSMMNG00015003059)	HSF4 (ENSMMNG00015003012) #18	ENSMMNG00015002974 #19	MATCAP1 (ENSMMNG00015002942) #20	EXOC3L1 (ENSMMNG00015002888) #21	ENSMMNG00015002857 #22	ELMO3 (ENSMMNG00015002794) #23	ENSMMNG00015002763 #24	ENSMMNG00015002751	TMEM208 (ENSMMNG00015002742) #25	FHOD1 (ENSMMNG00015002710) #26	SLC9A5 (ENSMMNG00015002666) #27	PLEKHG4 (ENSMMNG00015002609) #28	KCTD19 (ENSMMNG00015002571) #29	LRRC36 (ENSMMNG00015002487) #30	TPPP3 (ENSMMNG00015002443) #32	ZDHHC1 (ENSMMNG00015002416) #33	HSD11B2 (ENSMMNG00015002384) #34	ATP6V0D1 (ENSMMNG00015002352) #35	AGRP (ENSMMNG00015002325) #36	RIPOR1 (ENSMMNG00015002214) #37
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	7	SUPV3L1 (ENSPSNG00000019123)	HKDC1 (ENSPSNG00000019172)	HK1 (ENSPSNG00000019292)	TACR2 (ENSPSNG00000019582)	TSPAN15 (ENSPSNG00000019618)	NEUROG3 (ENSPSNG00000019648)	FAM241B (ENSPSNG00000019661)	COL13A1 (ENSPSNG00000019849)	MACROH2A2 (ENSPSNG00000020131)	AIFM2 (ENSPSNG00000020177)	TYSND1 (ENSPSNG00000020220)	SAR1A (ENSPSNG00000020248)	PPA1 (ENSPSNG00000020295)	NPFFR1 (ENSPSNG00000020327)	LRRC20 (ENSPSNG00000020377)	ENSPSNG00000020439 #22	ENSPSNG00000020464	NODAL (ENSPSNG00000020491)	PALD1 (ENSPSNG00000020534)	PRF1 (ENSPSNG00000020654)	ADAMTS14 (ENSPSNG00000020694)	TBATA (ENSPSNG00000020841)	SGPL1 (ENSPSNG00000020906)	ENSPSNG00000020953	UNC5B (ENSPSNG00000021006)	SLC29A3 (ENSPSNG00000021104)	CDH23 (ENSPSNG00000009904)	C10orf105 (ENSPSNG00000011646)	VSIR (ENSPSNG00000011665)	PSAP (ENSPSNG00000011730)	ENSPSNG00000011842
Vaquita	MODERN SPECIES	10	NAE1 (ENSPSNG00000016216)	CA7 (ENSPSNG00000016396)	PDP2 (ENSPSNG00000016552) #7	CDH16 (ENSPSNG00000016664) #8	RRAD (ENSPSNG00000017497) #9	CIAO2B (ENSPSNG00000017545) #10	CES2 (ENSPSNG00000017596) #11	CBFB (ENSPSNG00000017662) #14	PHAF1 (ENSPSNG00000017735) #15	B3GNT9 (ENSPSNG00000017784) #16	FBXL8 (ENSPSNG00000017855)	HSF4 (ENSPSNG00000017904) #18	ENSPSNG00000017959 #19	MATCAP1 (ENSPSNG00000018018) #20	EXOC3L1 (ENSPSNG00000018065) #21	ENSPSNG00000018189 #22	ELMO3 (ENSPSNG00000018256) #23	ENSPSNG00000018855 #24	ENSPSNG00000018895	TMEM208 (ENSPSNG00000018943) #25	FHOD1 (ENSPSNG00000019017) #26	SLC9A5 (ENSPSNG00000019084) #27	PLEKHG4 (ENSPSNG00000019161) #28	KCTD19 (ENSPSNG00000019323) #29	LRRC36 (ENSPSNG00000019384) #30	ENSPSNG00000019623 #32	ZDHHC1 (ENSPSNG00000019669) #33	HSD11B2 (ENSPSNG00000019771) #34	ATP6V0D1 (ENSPSNG00000019804) #35	AGRP (ENSPSNG00000019863) #36	RIPOR1 (ENSPSNG00000019920) #37
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	12	VPS26A (ENSPCTG00005006530)	SUPV3L1 (ENSPCTG00005006597)	HKDC1 (ENSPCTG00005006659)	TACR2 (ENSPCTG00005006726)	ENSPCTG00005006757	NEUROG3 (ENSPCTG00005006773)	FAM241B (ENSPCTG00005006794)	COL13A1 (ENSPCTG00005007462)	MACROH2A2 (ENSPCTG00005014364)	AIFM2 (ENSPCTG00005014407)	TYSND1 (ENSPCTG00005014466)	SAR1A (ENSPCTG00005014528)	PPA1 (ENSPCTG00005014580)	ENSPCTG00005014625	ENSPCTG00005014776	ENSPCTG00005014824 #22	EIF4EBP2 (ENSPCTG00005014870)	NODAL (ENSPCTG00005014924)	PALD1 (ENSPCTG00005014988)	PRF1 (ENSPCTG00005015153)	ADAMTS14 (ENSPCTG00005015211)	SGPL1 (ENSPCTG00005015728)	PCBD1 (ENSPCTG00005015772)	SLC29A3 (ENSPCTG00005015832)	ENSPCTG00005016034	C20H10orf105 (ENSPCTG00005016335)	VSIR (ENSPCTG00005016352)	CHST3 (ENSPCTG00005016377)	ENSPCTG00005016423	ASCC1 (ENSPCTG00005016464)	ANAPC16 (ENSPCTG00005016583)
Sperm whale	MODERN SPECIES	922										TRADD (ENSPCTG00005015903) #17	FBXL8 (ENSPCTG00005015852)	HSF4 (ENSPCTG00005015491) #18	ENSPCTG00005015399 #19	KIAA0895L (ENSPCTG00005015241) #20	EXOC3L1 (ENSPCTG00005015029) #21	E2F4 (ENSPCTG00005014982) #22	ELMO3 (ENSPCTG00005014302) #23	ENSPCTG00005014220 #24	ENSPCTG00005014178	TMEM208 (ENSPCTG00005014062) #25	FHOD1 (ENSPCTG00005013971) #26
Camelidae	ANCESTRAL SPECIES	9	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT01030000234613.a.b #21	ENSGT00390000004417.b #20	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Arabian camel	MODERN SPECIES	35	CDH16 (ENSCDRG00005007160) #8	RRAD (ENSCDRG00005007840) #9	CIAO2B (ENSCDRG00005007905) #10	CES2 (ENSCDRG00005007948) #11	CES3 (ENSCDRG00005008158) #12	CES4A (ENSCDRG00005008394) #13	CBFB (ENSCDRG00005008908) #14	PHAF1 (ENSCDRG00005009104) #15	B3GNT9 (ENSCDRG00005009199) #16	TRADD (ENSCDRG00005009217) #17	FBXL8 (ENSCDRG00005009311)	HSF4 (ENSCDRG00005009366) #18	ENSCDRG00005009628 #19	EXOC3L1 (ENSCDRG00005009698) #21	MATCAP1 (ENSCDRG00005009884) #20	E2F4 (ENSCDRG00005009938) #22	ELMO3 (ENSCDRG00005010079) #23	ENSCDRG00005010406 #24	ENSCDRG00005010459	ENSCDRG00005010491 #25	FHOD1 (ENSCDRG00005010592) #26	ENSCDRG00005010675 #26	SLC9A5 (ENSCDRG00005010730) #27	PLEKHG4 (ENSCDRG00005010841) #28	KCTD19 (ENSCDRG00005011106) #29	LRRC36 (ENSCDRG00005011255) #30	TPPP3 (ENSCDRG00005011501) #32	ZDHHC1 (ENSCDRG00005011521) #33	HSD11B2 (ENSCDRG00005011575) #34	ATP6V0D1 (ENSCDRG00005011601) #35	AGRP (ENSCDRG00005011760) #36
Suina	ANCESTRAL SPECIES	2	ENSGT00940000159757	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Pig	MODERN SPECIES	14	TERB1 (ENSSSCG00000035639)	CA7 (ENSSSCG00000038785)	PDP2 (ENSSSCG00000036067) #7	CDH16 (ENSSSCG00000022721) #8	RRAD (ENSSSCG00000036060) #9	CIAO2B (ENSSSCG00000033027) #10	CES3 (ENSSSCG00000024476) #12	CBFB (ENSSSCG00000033811) #14	PHAF1 (ENSSSCG00000040749) #15	B3GNT9 (ENSSSCG00000040139) #16	TRADD (ENSSSCG00000036321) #17	FBXL8 (ENSSSCG00000002793)	HSF4 (ENSSSCG00000040125) #18	MATCAP1 (ENSSSCG00000032443) #20	EXOC3L1 (ENSSSCG00000002788) #21	E2F4 (ENSSSCG00000002787) #22	ELMO3 (ENSSSCG00000002786) #23	ENSSSCG00000031199 #24	ENSSSCG00000002790 #25	FHOD1 (ENSSSCG00000026116) #26	SLC9A5 (ENSSSCG00000002783) #27	PLEKHG4 (ENSSSCG00000002782) #28	KCTD19 (ENSSSCG00000002781) #29	LRRC36 (ENSSSCG00000002779) #30	TPPP3 (ENSSSCG00000035983) #32	ZDHHC1 (ENSSSCG00000002778) #33	HSD11B2 (ENSSSCG00000002777) #34	ATP6V0D1 (ENSSSCG00000002776) #35	RIPOR1 (ENSSSCG00000002774) #37	AGRP (ENSSSCG00000002775) #36	CTCF (ENSSSCG00000024253)
Chacoan peccary	MODERN SPECIES	106	PDP2 (ENSCWAG00000019805) #7	CDH16 (ENSCWAG00000019851) #8	RRAD (ENSCWAG00000020265) #9	CIAO2B (ENSCWAG00000020272) #10	CES3 (ENSCWAG00000020290) #12	ENSCWAG00000020325	CBFB (ENSCWAG00000020337) #14	PHAF1 (ENSCWAG00000020358) #15	B3GNT9 (ENSCWAG00000020367) #16	TRADD (ENSCWAG00000020373) #17	FBXL8 (ENSCWAG00000020383)	HSF4 (ENSCWAG00000020397) #18	NOL3 (ENSCWAG00000020427) #19	MATCAP1 (ENSCWAG00000020443) #20	EXOC3L1 (ENSCWAG00000020467) #21	E2F4 (ENSCWAG00000020485) #22	ELMO3 (ENSCWAG00000020517) #23	ENSCWAG00000003654 #24	TMEM208 (ENSCWAG00000003685) #25	FHOD1 (ENSCWAG00000003717) #26	SLC9A5 (ENSCWAG00000003762) #27	PLEKHG4 (ENSCWAG00000003836) #28	KCTD19 (ENSCWAG00000003973) #29	LRRC36 (ENSCWAG00000004058) #30	ENSCWAG00000004252	TPPP3 (ENSCWAG00000004283) #32	ZDHHC1 (ENSCWAG00000004315) #33	HSD11B2 (ENSCWAG00000004393) #34	ATP6V0D1 (ENSCWAG00000004436) #35	AGRP (ENSCWAG00000004461) #36	RIPOR1 (ENSCWAG00000004502) #37
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Carnivora	ANCESTRAL SPECIES	2	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Felidae	ANCESTRAL SPECIES	7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Panthera	ANCESTRAL SPECIES	10	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Panthera_a	ANCESTRAL SPECIES	8	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
leopard	MODERN SPECIES	28	CA7 (ENSPPRG00000005536)	PDP2 (ENSPPRG00000016536) #7	CDH16 (ENSPPRG00000009161) #8	RRAD (ENSPPRG00000009391) #9	CIAO2B (ENSPPRG00000009809) #10	CES2 (ENSPPRG00000009977) #11	CES3 (ENSPPRG00000010944) #12	CES4A (ENSPPRG00000012641) #13	CBFB (ENSPPRG00000013240) #14	PHAF1 (ENSPPRG00000013795) #15	TRADD (ENSPPRG00000014449) #17	FBXL8 (ENSPPRG00000016650)	HSF4 (ENSPPRG00000019220) #18	ENSPPRG00000020293 #19	MATCAP1 (ENSPPRG00000021263) #20	E2F4 (ENSPPRG00000024105) #22	ELMO3 (ENSPPRG00000023242) #23	ENSPPRG00000022970 #24	ENSPPRG00000022903	TMEM208 (ENSPPRG00000000065) #25	SLC9A5 (ENSPPRG00000001927) #27	PLEKHG4 (ENSPPRG00000004387) #28	KCTD19 (ENSPPRG00000005410) #29	LRRC36 (ENSPPRG00000007845) #30	TPPP3 (ENSPPRG00000008182) #32	ZDHHC1 (ENSPPRG00000008488) #33	HSD11B2 (ENSPPRG00000008932) #34	ATP6V0D1 (ENSPPRG00000009684) #35	AGRP (ENSPPRG00000009953) #36	RIPOR1 (ENSPPRG00000013506) #37	CTCF (ENSPPRG00000014317)
lion	MODERN SPECIES	15	CDH16 (ENSPLOG00000012664) #8	RRAD (ENSPLOG00000013148) #9	CIAO2B (ENSPLOG00000013197) #10	ENSPLOG00000013241	CES3 (ENSPLOG00000013294) #12	CES4A (ENSPLOG00000013533) #13	ENSPLOG00000013982 #14	PHAF1 (ENSPLOG00000014041) #15	B3GNT9 (ENSPLOG00000014082) #16	TRADD (ENSPLOG00000014099) #17	FBXL8 (ENSPLOG00000014173)	HSF4 (ENSPLOG00000014216) #18	ENSPLOG00000014452 #19	MATCAP1 (ENSPLOG00000014489) #20	EXOC3L1 (ENSPLOG00000014607) #21	E2F4 (ENSPLOG00000014749) #22	ELMO3 (ENSPLOG00000014820) #23	ENSPLOG00000015357 #24	TMEM208 (ENSPLOG00000015468) #25	FHOD1 (ENSPLOG00000015635) #26	SLC9A5 (ENSPLOG00000015829) #27	PLEKHG4 (ENSPLOG00000016002) #28	KCTD19 (ENSPLOG00000016337) #29	LRRC36 (ENSPLOG00000016474) #30	TPPP3 (ENSPLOG00000016652) #32	ZDHHC1 (ENSPLOG00000016693) #33	HSD11B2 (ENSPLOG00000016794) #34	ATP6V0D1 (ENSPLOG00000016862) #35	AGRP (ENSPLOG00000016913) #36	RIPOR1 (ENSPLOG00000017003) #37	CTCF (ENSPLOG00000017439)
Tiger	MODERN SPECIES	320	CA7 (ENSPTIG00000019280)	PDP2 (ENSPTIG00000006204) #7	CDH16 (ENSPTIG00000019612) #8	RRAD (ENSPTIG00000001809) #9	CIAO2B (ENSPTIG00000003290) #10	CES2 (ENSPTIG00000004063) #11	CES3 (ENSPTIG00000004489) #12	CES4A (ENSPTIG00000005543) #13	ENSPTIG00000006285 #14	PHAF1 (ENSPTIG00000006322) #15	TRADD (ENSPTIG00000007077) #17	FBXL8 (ENSPTIG00000007308)	HSF4 (ENSPTIG00000007435) #18	ENSPTIG00000008436 #19	MATCAP1 (ENSPTIG00000008588) #20	E2F4 (ENSPTIG00000009532) #22	ELMO3 (ENSPTIG00000009736) #23	ENSPTIG00000010332 #24	TMEM208 (ENSPTIG00000010543) #25	SLC9A5 (ENSPTIG00000011105) #27	PLEKHG4 (ENSPTIG00000011316) #28	KCTD19 (ENSPTIG00000011820) #29	LRRC36 (ENSPTIG00000011930) #30	TPPP3 (ENSPTIG00000012322) #32	ZDHHC1 (ENSPTIG00000012632) #33	HSD11B2 (ENSPTIG00000013334) #34	ATP6V0D1 (ENSPTIG00000013473) #35	AGRP (ENSPTIG00000013563) #36	CTCF (ENSPTIG00000015459)	CARMIL2 (ENSPTIG00000016035)	ACD (ENSPTIG00000017755)
Cat	MODERN SPECIES	246	CDH16 (ENSFCAG00000012774) #8	RRAD (ENSFCAG00000026895) #9	CIAO2B (ENSFCAG00000029216) #10	CES2 (ENSFCAG00000003806) #11	ENSFCAG00000001200 #12	CES4A (ENSFCAG00000003809) #13	CBFB (ENSFCAG00000045823) #14	CE2H16orf70 (ENSFCAG00000009260) #15	B3GNT9 (ENSFCAG00000046265) #16	TRADD (ENSFCAG00000043839) #17	FBXL8 (ENSFCAG00000009263)	HSF4 (ENSFCAG00000014099) #18	NOL3 (ENSFCAG00000009264) #19	MATCAP1 (ENSFCAG00000009265) #20	EXOC3L1 (ENSFCAG00000009267) #21	E2F4 (ENSFCAG00000009268) #22	ELMO3 (ENSFCAG00000009269) #23	ENSFCAG00000031746 #24	TMEM208 (ENSFCAG00000024313) #25	FHOD1 (ENSFCAG00000009272) #26	SLC9A5 (ENSFCAG00000028820) #27	PLEKHG4 (ENSFCAG00000009274) #28	KCTD19 (ENSFCAG00000009275) #29	LRRC36 (ENSFCAG00000009276) #30	TPPP3 (ENSFCAG00000009277) #32	ZDHHC1 (ENSFCAG00000018593) #33	HSD11B2 (ENSFCAG00000027537) #34	ATP6V0D1 (ENSFCAG00000003433) #35	AGRP (ENSFCAG00000037497) #36	RIPOR1 (ENSFCAG00000009278) #37	CTCF (ENSFCAG00000003492)
Caniformia	ANCESTRAL SPECIES	1	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Ursidae	ANCESTRAL SPECIES	8	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Ursus	ANCESTRAL SPECIES	41	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00990000205363	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
American black bear	MODERN SPECIES	25						ENSUAMG00000015699 #14	PHAF1 (ENSUAMG00000015701) #15	B3GNT9 (ENSUAMG00000015703) #16	TRADD (ENSUAMG00000015704) #17	ENSUAMG00000015706	FBXL8 (ENSUAMG00000015707)	HSF4 (ENSUAMG00000015720) #18	MATCAP1 (ENSUAMG00000015885) #20	ENSUAMG00000015886 #19	EXOC3L1 (ENSUAMG00000015887) #21	E2F4 (ENSUAMG00000015888) #22	ELMO3 (ENSUAMG00000015889) #23	ENSUAMG00000015890 #24	TMEM208 (ENSUAMG00000015892) #25	ENSUAMG00000015894 #26	SLC9A5 (ENSUAMG00000015895) #27	ENSUAMG00000015897 #28	ENSUAMG00000015899 #28	KCTD19 (ENSUAMG00000015905) #29	LRRC36 (ENSUAMG00000015910) #30	TPPP3 (ENSUAMG00000015912) #32	ZDHHC1 (ENSUAMG00000015914) #33	ENSUAMG00000015917 #34	ENSUAMG00000015918 #34	ATP6V0D1 (ENSUAMG00000015919) #35	AGRP (ENSUAMG00000015920) #36
Polar bear	MODERN SPECIES	245	NAE1 (ENSUMAG00000020485)	CA7 (ENSUMAG00000020388)	PDP2 (ENSUMAG00000020386) #7	CDH16 (ENSUMAG00000020327) #8	RRAD (ENSUMAG00000020298) #9	CIAO2B (ENSUMAG00000020292) #10	CES2 (ENSUMAG00000020281) #11	ENSUMAG00000020276 #12	ENSUMAG00000020272 #14	PHAF1 (ENSUMAG00000020258) #15	B3GNT9 (ENSUMAG00000020254) #16	TRADD (ENSUMAG00000020250) #17	HSF4 (ENSUMAG00000020034) #18	MATCAP1 (ENSUMAG00000020005) #20	EXOC3L1 (ENSUMAG00000019991) #21	E2F4 (ENSUMAG00000019980) #22	ELMO3 (ENSUMAG00000019904) #23	ENSUMAG00000019889 #24	TMEM208 (ENSUMAG00000019884) #25	SLC9A5 (ENSUMAG00000019821) #27	ENSUMAG00000019816 #28	ENSUMAG00000019806 #28	KCTD19 (ENSUMAG00000019780) #29	LRRC36 (ENSUMAG00000019753) #30	TPPP3 (ENSUMAG00000019745) #32	ZDHHC1 (ENSUMAG00000019731) #33	HSD11B2 (ENSUMAG00000019726) #34	ATP6V0D1 (ENSUMAG00000019723) #35	AGRP (ENSUMAG00000019719) #36	RIPOR1 (ENSUMAG00000019710) #37	CTCF (ENSUMAG00000019706)
Giant Panda	MODERN SPECIES	3	PDP2 (ENSAMEG00000019711) #7	CDH16 (ENSAMEG00000017136) #8	RRAD (ENSAMEG00000024334) #9	CIAO2B (ENSAMEG00000025163) #10	CES2 (ENSAMEG00000017174) #11	CES3 (ENSAMEG00000017207) #12	CBFB (ENSAMEG00000031354) #14	PHAF1 (ENSAMEG00000017219) #15	B3GNT9 (ENSAMEG00000026064) #16	TRADD (ENSAMEG00000017232) #17	FBXL8 (ENSAMEG00000017236)	HSF4 (ENSAMEG00000017238) #18	ENSAMEG00000017263 #19	MATCAP1 (ENSAMEG00000017266) #20	EXOC3L1 (ENSAMEG00000017273) #21	E2F4 (ENSAMEG00000017275) #22	ELMO3 (ENSAMEG00000017281) #23	ENSAMEG00000017316 #24	TMEM208 (ENSAMEG00000017322) #25	SLC9A5 (ENSAMEG00000017339) #27	PLEKHG4 (ENSAMEG00000017357) #28	KCTD19 (ENSAMEG00000017368) #29	LRRC36 (ENSAMEG00000017372) #30	ZDHHC1 (ENSAMEG00000017379) #33	HSD11B2 (ENSAMEG00000017389) #34	ATP6V0D1 (ENSAMEG00000017393) #35	AGRP (ENSAMEG00000017404) #36	RIPOR1 (ENSAMEG00000017405) #37	CTCF (ENSAMEG00000017438)	CARMIL2 (ENSAMEG00000017460)	ACD (ENSAMEG00000017492)
Mustelinae	ANCESTRAL SPECIES	6	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
American mink	MODERN SPECIES	2	PDP2 (ENSNVIG00000010937) #7	CDH16 (ENSNVIG00000010820) #8	RRAD (ENSNVIG00000010800) #9	CIAO2B (ENSNVIG00000010786) #10	CES2 (ENSNVIG00000010773) #11	CES3 (ENSNVIG00000010721) #12	CBFB (ENSNVIG00000010680) #14	PHAF1 (ENSNVIG00000010652) #15	B3GNT9 (ENSNVIG00000010650) #16	TRADD (ENSNVIG00000010625) #17	FBXL8 (ENSNVIG00000010608)	HSF4 (ENSNVIG00000010576) #18	ENSNVIG00000010569 #19	MATCAP1 (ENSNVIG00000010557) #20	EXOC3L1 (ENSNVIG00000010533) #21	E2F4 (ENSNVIG00000010516) #22	ELMO3 (ENSNVIG00000010475) #23	ENSNVIG00000010464 #24	TMEM208 (ENSNVIG00000010434) #25	FHOD1 (ENSNVIG00000010420) #26	ENSNVIG00000010413 #26	SLC9A5 (ENSNVIG00000010397) #27	PLEKHG4 (ENSNVIG00000010234) #28	KCTD19 (ENSNVIG00000010210) #29	LRRC36 (ENSNVIG00000010163) #30	TPPP3 (ENSNVIG00000010145) #32	ZDHHC1 (ENSNVIG00000010126) #33	HSD11B2 (ENSNVIG00000010109) #34	ATP6V0D1 (ENSNVIG00000010093) #35	AGRP (ENSNVIG00000010084) #36	RIPOR1 (ENSNVIG00000009916) #37
Ferret	MODERN SPECIES	174	PDP2 (ENSMPUG00000019891) #7	CDH16 (ENSMPUG00000005284) #8	RRAD (ENSMPUG00000005296) #9	CIAO2B (ENSMPUG00000005303) #10	CES2 (ENSMPUG00000005332) #11	CES3 (ENSMPUG00000005350) #12	CBFB (ENSMPUG00000005362) #14	PHAF1 (ENSMPUG00000005369) #15	B3GNT9 (ENSMPUG00000019893) #16	TRADD (ENSMPUG00000005387) #17	FBXL8 (ENSMPUG00000005412)	HSF4 (ENSMPUG00000005418) #18	ENSMPUG00000005530 #19	MATCAP1 (ENSMPUG00000005537) #20	EXOC3L1 (ENSMPUG00000005549) #21	E2F4 (ENSMPUG00000005564) #22	ELMO3 (ENSMPUG00000005677) #23	ENSMPUG00000005910 #24	TMEM208 (ENSMPUG00000005954) #25	FHOD1 (ENSMPUG00000006014) #26	SLC9A5 (ENSMPUG00000006032) #27	PLEKHG4 (ENSMPUG00000006141) #28	KCTD19 (ENSMPUG00000006157) #29	LRRC36 (ENSMPUG00000006211) #30	TPPP3 (ENSMPUG00000006277) #32	ZDHHC1 (ENSMPUG00000006284) #33	HSD11B2 (ENSMPUG00000006293) #34	ATP6V0D1 (ENSMPUG00000006345) #35	AGRP (ENSMPUG00000006360) #36	RIPOR1 (ENSMPUG00000006380) #37	CTCF (ENSMPUG00000006401)
Canidae	ANCESTRAL SPECIES	11	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000154694.k.a	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Red fox	MODERN SPECIES	86	PDP2 (ENSVVUG00000011059) #7	CDH16 (ENSVVUG00000011064) #8	RRAD (ENSVVUG00000011080) #9	CIAO2B (ENSVVUG00000011091) #10	CES2 (ENSVVUG00000011116) #11	ENSVVUG00000011153	ENSVVUG00000011164 #14	PHAF1 (ENSVVUG00000011171) #15	B3GNT9 (ENSVVUG00000011177) #16	TRADD (ENSVVUG00000011183) #17	FBXL8 (ENSVVUG00000011188)	HSF4 (ENSVVUG00000011195) #18	ENSVVUG00000011543 #19	MATCAP1 (ENSVVUG00000011547) #20	EXOC3L1 (ENSVVUG00000011555) #21	E2F4 (ENSVVUG00000011569) #22	ELMO3 (ENSVVUG00000011584) #23	ENSVVUG00000011596 #24	TMEM208 (ENSVVUG00000011608) #25	SLC9A5 (ENSVVUG00000011891) #27	PLEKHG4 (ENSVVUG00000011993) #28	KCTD19 (ENSVVUG00000012031) #29	LRRC36 (ENSVVUG00000012071) #30	TPPP3 (ENSVVUG00000012076) #32	ZDHHC1 (ENSVVUG00000012083) #33	HSD11B2 (ENSVVUG00000012093) #34	ATP6V0D1 (ENSVVUG00000012104) #35	AGRP (ENSVVUG00000012120) #36	RIPOR1 (ENSVVUG00000012147) #37	CTCF (ENSVVUG00000012154)	CARMIL2 (ENSVVUG00000012192)
Canis_lupus	ANCESTRAL SPECIES	5	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000154694.k.a	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Dog	DUPLICATION
Dog	MODERN SPECIES	4	ENSCAFG00845009455	ENSCAFG00845009231	ENSCAFG00845009169	YTHDC1 (ENSCAFG00845009010)	ENSCAFG00845008866	ENSCAFG00845008806	ENSCAFG00845008764	TMPRSS11A (ENSCAFG00845008712)	ENSCAFG00845008657	ENSCAFG00845008566	ENSCAFG00845008485	GNRHR (ENSCAFG00845008435)	UBA6 (ENSCAFG00845007757)	STAP1 (ENSCAFG00845007408)	CENPC (ENSCAFG00845007271)	ENSCAFG00845007153 #22	EPHA5 (ENSCAFG00845006153)	TECRL (ENSCAFG00845005649)	ADGRL3 (ENSCAFG00845014364)	ENSCAFG00845014256	ENSCAFG00845014244	ENSCAFG00845014237	ENSCAFG00845014210	ENSCAFG00845014179	POLR2B (ENSCAFG00845014082)	NOA1 (ENSCAFG00845013997)	REST (ENSCAFG00845013968)	SPINK2 (ENSCAFG00845013914)	THEGL (ENSCAFG00845013867)	ENSCAFG00845013850	ARL9 (ENSCAFG00845013838)
Dog	MODERN SPECIES	33	PDP2 (ENSCAFG00845011036) #7	CDH16 (ENSCAFG00845010781) #8	RRAD (ENSCAFG00845010705) #9	CIAO2B (ENSCAFG00845010671) #10	CES2 (ENSCAFG00845010523) #11	ENSCAFG00845010462	CBFB (ENSCAFG00845010432) #14	PHAF1 (ENSCAFG00845010359) #15	B3GNT9 (ENSCAFG00845010321) #16	FBXL8 (ENSCAFG00845010281)	TRADD (ENSCAFG00845010243) #17	HSF4 (ENSCAFG00845010066) #18	HSF4 (ENSCAFG00845009966) #19	MATCAP1 (ENSCAFG00845009874) #20	EXOC3L1 (ENSCAFG00845009747) #21	ENSCAFG00845009673 #22	ELMO3 (ENSCAFG00845009511) #23	ENSCAFG00845009436 #24	TMEM208 (ENSCAFG00845009370) #25	FHOD1 (ENSCAFG00845009145) #26	SLC9A5 (ENSCAFG00845009040) #27	PLEKHG4 (ENSCAFG00845008847) #28	KCTD19 (ENSCAFG00845008661) #29	LRRC36 (ENSCAFG00845008572) #30	TPPP3 (ENSCAFG00845008424) #32	ZDHHC1 (ENSCAFG00845008324) #33	HSD11B2 (ENSCAFG00845008256) #34	ATP6V0D1 (ENSCAFG00845008188) #35	AGRP (ENSCAFG00845008104) #36	RIPOR1 (ENSCAFG00845007707) #37	CTCF (ENSCAFG00845007437)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	2	ENSCAFG00020027102	ENSCAFG00020027103	ENSCAFG00020027107	ENSCAFG00020027109	YTHDC1 (ENSCAFG00020027112)	TMPRSS11E (ENSCAFG00020027116)	ENSCAFG00020027117	TMPRSS11F (ENSCAFG00020027118)	ENSCAFG00020027120	TMPRSS11A (ENSCAFG00020027122)	TMPRSS11D (ENSCAFG00020027124)	ENSCAFG00020027128	GNRHR (ENSCAFG00020027129)	UBA6 (ENSCAFG00020027143)	CENPC (ENSCAFG00020027175)	ENSCAFG00020027180 #22	EPHA5 (ENSCAFG00020027199)	TECRL (ENSCAFG00020027208)	ADGRL3 (ENSCAFG00020027216)	ENSCAFG00020027309	ENSCAFG00020027310	ENSCAFG00020027312	ENSCAFG00020027313	ENSCAFG00020027315	IGFBP7 (ENSCAFG00020027316)	POLR2B (ENSCAFG00020027317)	NOA1 (ENSCAFG00020027319)	ENSCAFG00020027320	ENSCAFG00020027322	ENSCAFG00020027323	THEGL (ENSCAFG00020027324)
Dingo	MODERN SPECIES	373	CA7 (ENSCAFG00020017940)	CDH16 (ENSCAFG00020017962) #8	RRAD (ENSCAFG00020018006) #9	CIAO2B (ENSCAFG00020018022) #10	CES2 (ENSCAFG00020018024) #11	ENSCAFG00020018031	CBFB (ENSCAFG00020018039) #14	PHAF1 (ENSCAFG00020018043) #15	B3GNT9 (ENSCAFG00020018052) #16	TRADD (ENSCAFG00020018054) #17	FBXL8 (ENSCAFG00020018057)	HSF4 (ENSCAFG00020018058) #18	ENSCAFG00020018066 #19	MATCAP1 (ENSCAFG00020018068) #20	EXOC3L1 (ENSCAFG00020018073) #21	ENSCAFG00020018080 #22	ELMO3 (ENSCAFG00020018084) #23	ENSCAFG00020018090 #24	TMEM208 (ENSCAFG00020018093) #25	FHOD1 (ENSCAFG00020018094) #26	SLC9A5 (ENSCAFG00020018099) #27	ENSCAFG00020018116 #28	ENSCAFG00020018122 #28	KCTD19 (ENSCAFG00020018130) #29	LRRC36 (ENSCAFG00020018145) #30	TPPP3 (ENSCAFG00020018161) #32	ZDHHC1 (ENSCAFG00020018166) #33	HSD11B2 (ENSCAFG00020018177) #34	ATP6V0D1 (ENSCAFG00020018180) #35	AGRP (ENSCAFG00020018182) #36	RIPOR1 (ENSCAFG00020018185) #37
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000164375	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Equus	ANCESTRAL SPECIES	20	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672	ENSGT00940000161003
Donkey	MODERN SPECIES	20	PDP2 (ENSEASG00005025884) #7	CDH16 (ENSEASG00005010892) #8	RRAD (ENSEASG00005010896) #9	CIAO2B (ENSEASG00005031727) #10	CES2 (ENSEASG00005010903) #11	CES3 (ENSEASG00005010928) #12	CBFB (ENSEASG00005010936) #14	PHAF1 (ENSEASG00005010953) #15	B3GNT9 (ENSEASG00005034023) #16	TRADD (ENSEASG00005011002) #17	FBXL8 (ENSEASG00005034607)	HSF4 (ENSEASG00005011004) #18	ENSEASG00005011062 #19	MATCAP1 (ENSEASG00005011064) #20	EXOC3L1 (ENSEASG00005011071) #21	E2F4 (ENSEASG00005011078) #22	ELMO3 (ENSEASG00005011163) #23	TMEM208 (ENSEASG00005012536) #25	FHOD1 (ENSEASG00005012549) #26	SLC9A5 (ENSEASG00005012688) #27	PLEKHG4 (ENSEASG00005012694) #28	KCTD19 (ENSEASG00005012701) #29	LRRC36 (ENSEASG00005012707) #30	TPPP3 (ENSEASG00005028584) #32	ZDHHC1 (ENSEASG00005012723) #33	HSD11B2 (ENSEASG00005012736) #34	ATP6V0D1 (ENSEASG00005012742) #35	AGRP (ENSEASG00005012748) #36	RIPOR1 (ENSEASG00005012769) #37	CTCF (ENSEASG00005012799)	CARMIL2 (ENSEASG00005012824)
Horse	MODERN SPECIES	22	CA7 (ENSECAG00000024943)	PDP2 (ENSECAG00000006359) #7	CDH16 (ENSECAG00000009969) #8	RRAD (ENSECAG00000006674) #9	CES2 (ENSECAG00000012061)	CIAO2B (ENSECAG00000010902) #10	CES3 (ENSECAG00000010334) #12	CBFB (ENSECAG00000014879) #14	PHAF1 (ENSECAG00000022219) #15	B3GNT9 (ENSECAG00000006409) #16	TRADD (ENSECAG00000013754) #17	FBXL8 (ENSECAG00000034017)	HSF4 (ENSECAG00000016708) #18	MATCAP1 (ENSECAG00000024529) #20	EXOC3L1 (ENSECAG00000001268) #21	E2F4 (ENSECAG00000015595) #22	ELMO3 (ENSECAG00000006824) #23	FHOD1 (ENSECAG00000013595) #26	SLC9A5 (ENSECAG00000020279) #27	KCTD19 (ENSECAG00000014064) #29	PLEKHG4 (ENSECAG00000006999) #28	LRRC36 (ENSECAG00000021516) #30	TPPP3 (ENSECAG00000007133) #32	ZDHHC1 (ENSECAG00000010730) #33	HSD11B2 (ENSECAG00000014152) #34	ATP6V0D1 (ENSECAG00000015817) #35	RIPOR1 (ENSECAG00000018681) #37	AGRP (ENSECAG00000016828) #36	CTCF (ENSECAG00000015924)	CARMIL2 (ENSECAG00000010729)	ACD (ENSECAG00000020293)
Chiroptera	ANCESTRAL SPECIES	21	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000164375	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Megabat	MODERN SPECIES	2556															EXOC3L1 (ENSPVAG00000005273) #21	E2F4 (ENSPVAG00000005274) #22	ELMO3 (ENSPVAG00000005275) #23	ENSPVAG00000005276 #24	TMEM208 (ENSPVAG00000005277) #25	FHOD1 (ENSPVAG00000005280) #26	SLC9A5 (ENSPVAG00000005281) #27
Microchiroptera	ANCESTRAL SPECIES	12	ENSGT00550000074901	ENSGT00940000159757	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Greater horseshoe bat	MODERN SPECIES	6	TERB1 (ENSRFEG00010011648)	NAE1 (ENSRFEG00010011905)	CA7 (ENSRFEG00010012260)	CDH16 (ENSRFEG00010012368) #8	RRAD (ENSRFEG00010012702) #9	CIAO2B (ENSRFEG00010012765) #10	CBFB (ENSRFEG00010012858) #14	PHAF1 (ENSRFEG00010012954) #15	B3GNT9 (ENSRFEG00010013003) #16	TRADD (ENSRFEG00010013012) #17	FBXL8 (ENSRFEG00010013130)	HSF4 (ENSRFEG00010013178) #18	NOL3 (ENSRFEG00010013567) #19	MATCAP1 (ENSRFEG00010013678) #20	EXOC3L1 (ENSRFEG00010013737) #21	E2F4 (ENSRFEG00010013945) #22	ELMO3 (ENSRFEG00010014029) #23	ENSRFEG00010014143 #24	ENSRFEG00010014162 #24	TMEM208 (ENSRFEG00010014189) #25	FHOD1 (ENSRFEG00010014292) #26	SLC9A5 (ENSRFEG00010014393) #27	ENSRFEG00010014828 #28	KCTD19 (ENSRFEG00010014975) #29	LRRC36 (ENSRFEG00010015268) #30	TPPP3 (ENSRFEG00010015768) #32	ZDHHC1 (ENSRFEG00010015816) #33	HSD11B2 (ENSRFEG00010015871) #34	ATP6V0D1 (ENSRFEG00010015904) #35	AGRP (ENSRFEG00010015961) #36	RIPOR1 (ENSRFEG00010016037) #37
Microbat	MODERN SPECIES	1211	NAE1 (ENSMLUG00000012976)	CA7 (ENSMLUG00000012984)	PDP2 (ENSMLUG00000014958) #7	CDH16 (ENSMLUG00000013705) #8	RRAD (ENSMLUG00000013700) #9	CIAO2B (ENSMLUG00000014953) #10	CBFB (ENSMLUG00000010999) #14	ENSMLUG00000011012 #15	B3GNT9 (ENSMLUG00000023514) #16	TRADD (ENSMLUG00000011054) #17	FBXL8 (ENSMLUG00000011063)	HSF4 (ENSMLUG00000011083) #18	ENSMLUG00000011138 #19	MATCAP1 (ENSMLUG00000011150) #20	EXOC3L1 (ENSMLUG00000001121) #21	E2F4 (ENSMLUG00000023162) #22	ELMO3 (ENSMLUG00000001134) #23	ENSMLUG00000001143 #24	TMEM208 (ENSMLUG00000001149) #25	FHOD1 (ENSMLUG00000001154) #26	SLC9A5 (ENSMLUG00000001170) #27	PLEKHG4 (ENSMLUG00000001181) #28	KCTD19 (ENSMLUG00000001193) #29	LRRC36 (ENSMLUG00000001203) #30	ENSMLUG00000026149	TPPP3 (ENSMLUG00000005171) #32	ZDHHC1 (ENSMLUG00000005174) #33	HSD11B2 (ENSMLUG00000024893) #34	ATP6V0D1 (ENSMLUG00000005187) #35	AGRP (ENSMLUG00000005196) #36	RIPOR1 (ENSMLUG00000005201) #37
Eulipotyphla	ANCESTRAL SPECIES	3										ENSGT00940000153528.a.b.a.a #15	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30
Hedgehog	MODERN SPECIES	8614																E2F4 (ENSEEUG00000014066) #22	ELMO3 (ENSEEUG00000014436) #23	ENSEEUG00000014542 #24	TMEM208 (ENSEEUG00000014664) #25	FHOD1 (ENSEEUG00000003091) #26	SLC9A5 (ENSEEUG00000003251) #27	ENSEEUG00000003436 #28	KCTD19 (ENSEEUG00000003698) #29
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000153793 #11	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Primates	ANCESTRAL SPECIES	21	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Strepsirrhini	ANCESTRAL SPECIES	17	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000155200 #12	ENSGT00940000153793 #11	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Lemuriformes	ANCESTRAL SPECIES	31	ENSGT00940000157187	ENSGT00940000156131.a.b	ENSGT00550000075019	ENSGT00740000117161	ENSGT00940000153793 #11	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Lemuriformes_a	ANCESTRAL SPECIES	29	ENSGT00940000157499	ENSGT00940000157187	ENSGT00940000156131.a.b	ENSGT00550000075019	ENSGT00940000161738	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Greater bamboo lemur	MODERN SPECIES	1053						ENSPSMG00000009323 #13	CBFB (ENSPSMG00000009337) #14	PHAF1 (ENSPSMG00000009359) #15	B3GNT9 (ENSPSMG00000009364) #16	TRADD (ENSPSMG00000009370) #17	FBXL8 (ENSPSMG00000009377)	HSF4 (ENSPSMG00000009399) #18	ENSPSMG00000009414 #19	MATCAP1 (ENSPSMG00000009424) #20	EXOC3L1 (ENSPSMG00000009428) #21	E2F4 (ENSPSMG00000009487) #22	ELMO3 (ENSPSMG00000009500) #23	ENSPSMG00000009507 #24	ENSPSMG00000009512	TMEM208 (ENSPSMG00000009537) #25	ENSPSMG00000009572 #26	ENSPSMG00000009579 #26	SLC9A5 (ENSPSMG00000009595) #27	PLEKHG4 (ENSPSMG00000009668) #28	KCTD19 (ENSPSMG00000009687) #29	LRRC36 (ENSPSMG00000009720) #30	TPPP3 (ENSPSMG00000009738) #32	ZDHHC1 (ENSPSMG00000009762) #33	HSD11B2 (ENSPSMG00000009769) #34	ATP6V0D1 (ENSPSMG00000009814) #35	AGRP (ENSPSMG00000009841) #36
Coquerels sifaka	MODERN SPECIES	821	ENSPCOG00000019347	PLA2G15 (ENSPCOG00000027623)	ESRP2 (ENSPCOG00000022552)	NFATC3 (ENSPCOG00000005362)	DUS2 (ENSPCOG00000026045)	DDX28 (ENSPCOG00000024632)	CES4A (ENSPCOG00000023869) #13	CBFB (ENSPCOG00000024867) #14	PHAF1 (ENSPCOG00000015039) #15	TRADD (ENSPCOG00000020163) #17	FBXL8 (ENSPCOG00000026268)	HSF4 (ENSPCOG00000026876) #18	ENSPCOG00000006951 #19	MATCAP1 (ENSPCOG00000022553) #20	EXOC3L1 (ENSPCOG00000027783) #21	E2F4 (ENSPCOG00000020034) #22	ELMO3 (ENSPCOG00000026658) #23	ENSPCOG00000014126 #24	TMEM208 (ENSPCOG00000026225) #25	FHOD1 (ENSPCOG00000002886) #26	SLC9A5 (ENSPCOG00000028144) #27	PLEKHG4 (ENSPCOG00000018644) #28	KCTD19 (ENSPCOG00000016170) #29	ENSPCOG00000017976 #30	TPPP3 (ENSPCOG00000016301) #32	ZDHHC1 (ENSPCOG00000024962) #33	HSD11B2 (ENSPCOG00000025233) #34	ATP6V0D1 (ENSPCOG00000012981) #35	AGRP (ENSPCOG00000020567) #36	RIPOR1 (ENSPCOG00000023759) #37	CTCF (ENSPCOG00000026050)
Mouse lemur	MODERN SPECIES	12	NFATC3 (ENSMICG00000011371)	ENSMICG00000030045	DUS2 (ENSMICG00000011354)	DPEP2NB (ENSMICG00000033015)	CES2 (ENSMICG00000028404) #11	ENSMICG00000028840	CES4A (ENSMICG00000030422) #13	CBFB (ENSMICG00000028380) #14	PHAF1 (ENSMICG00000043907) #15	TRADD (ENSMICG00000007708) #17	FBXL8 (ENSMICG00000042011)	HSF4 (ENSMICG00000007714) #18	ENSMICG00000043710 #19	MATCAP1 (ENSMICG00000035308) #20	EXOC3L1 (ENSMICG00000007737) #21	E2F4 (ENSMICG00000007744) #22	ELMO3 (ENSMICG00000007753) #23	ENSMICG00000007763 #24	TMEM208 (ENSMICG00000007767) #25	FHOD1 (ENSMICG00000007774) #26	SLC9A5 (ENSMICG00000007789) #27	PLEKHG4 (ENSMICG00000007799) #28	KCTD19 (ENSMICG00000007810) #29	LRRC36 (ENSMICG00000012051) #30	TPPP3 (ENSMICG00000027878) #32	ZDHHC1 (ENSMICG00000012064) #33	HSD11B2 (ENSMICG00000034557) #34	ATP6V0D1 (ENSMICG00000012079) #35	AGRP (ENSMICG00000045134) #36	RIPOR1 (ENSMICG00000012105) #37	CTCF (ENSMICG00000012128)
Bushbaby	MODERN SPECIES	266	RRAD (ENSOGAG00000014676) #9	CIAO2B (ENSOGAG00000024476) #10	CES3 (ENSOGAG00000004516) #12	CES2 (ENSOGAG00000006597) #11	CES4A (ENSOGAG00000004518) #13	ENSOGAG00000000337	CBFB (ENSOGAG00000004521) #14	PHAF1 (ENSOGAG00000004524) #15	B3GNT9 (ENSOGAG00000024513) #16	TRADD (ENSOGAG00000034457) #17	FBXL8 (ENSOGAG00000030725)	HSF4 (ENSOGAG00000001391) #18	ENSOGAG00000033380 #19	MATCAP1 (ENSOGAG00000000008) #20	EXOC3L1 (ENSOGAG00000000009) #21	E2F4 (ENSOGAG00000000010) #22	ELMO3 (ENSOGAG00000000011) #23	ENSOGAG00000033153	ENSOGAG00000000012 #24	ENSOGAG00000000013	FHOD1 (ENSOGAG00000000014) #26	SLC9A5 (ENSOGAG00000000015) #27	PLEKHG4 (ENSOGAG00000000016) #28	KCTD19 (ENSOGAG00000000017) #29	LRRC36 (ENSOGAG00000000018) #30	TPPP3 (ENSOGAG00000000019) #32	ZDHHC1 (ENSOGAG00000000020) #33	HSD11B2 (ENSOGAG00000028718) #34	ATP6V0D1 (ENSOGAG00000000021) #35	AGRP (ENSOGAG00000034563) #36	RIPOR1 (ENSOGAG00000011861) #37
Haplorrhini	ANCESTRAL SPECIES	21	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	1381								ENSTSYG00000009039 #14	CUNH16orf70 (ENSTSYG00000005441) #15	TRADD (ENSTSYG00000035881) #17	FBXL8 (ENSTSYG00000035544)	HSF4 (ENSTSYG00000030908) #18	ENSTSYG00000027378 #19	KIAA0895L (ENSTSYG00000014556) #20	EXOC3L1 (ENSTSYG00000034147) #21	ENSTSYG00000007645 #22	ELMO3 (ENSTSYG00000028878) #23	ENSTSYG00000005501 #24	TMEM208 (ENSTSYG00000031480) #25	FHOD1 (ENSTSYG00000026352) #26	SLC9A5 (ENSTSYG00000013838) #27	PLEKHG4 (ENSTSYG00000001169) #28	KCTD19 (ENSTSYG00000005449) #29	LRRC36 (ENSTSYG00000005473) #30	TPPP3 (ENSTSYG00000028006) #32	ZDHHC1 (ENSTSYG00000035954) #33	HSD11B2 (ENSTSYG00000026090) #34	ATP6V0D1 (ENSTSYG00000025917) #35
Tarsier	MODERN SPECIES	3941															MGAT1 (ENSTSYG00000005566)	ENSTSYG00000030171 #22
Simiiformes	ANCESTRAL SPECIES	21	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Platyrrhini	ANCESTRAL SPECIES	21	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Cebidae	ANCESTRAL SPECIES	21	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Cebidae_a	ANCESTRAL SPECIES	37	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Bolivian squirrel monkey	MODERN SPECIES	125	PDP2 (ENSSBOG00000018774) #7	CDH16 (ENSSBOG00000000059) #8	RRAD (ENSSBOG00000026924) #9	ENSSBOG00000034849 #10	CES2 (ENSSBOG00000023519) #11	CES3 (ENSSBOG00000034389) #12	CES4A (ENSSBOG00000026647) #13	CBFB (ENSSBOG00000033643) #14	PHAF1 (ENSSBOG00000029225) #15	TRADD (ENSSBOG00000030892) #17	FBXL8 (ENSSBOG00000027852)	HSF4 (ENSSBOG00000032426) #18	ENSSBOG00000034224 #19	MATCAP1 (ENSSBOG00000022034) #20	EXOC3L1 (ENSSBOG00000021491) #21	E2F4 (ENSSBOG00000028854) #22	ELMO3 (ENSSBOG00000020441) #23	ENSSBOG00000017407 #24	TMEM208 (ENSSBOG00000029141) #25	FHOD1 (ENSSBOG00000029348) #26	SLC9A5 (ENSSBOG00000033771) #27	PLEKHG4 (ENSSBOG00000019498) #28	KCTD19 (ENSSBOG00000035579) #29	LRRC36 (ENSSBOG00000018750) #30	TPPP3 (ENSSBOG00000027473) #32	ZDHHC1 (ENSSBOG00000024750) #33	HSD11B2 (ENSSBOG00000020734) #34	ATP6V0D1 (ENSSBOG00000023987) #35	AGRP (ENSSBOG00000028971) #36	RIPOR1 (ENSSBOG00000019007) #37	CTCF (ENSSBOG00000030958)
Capuchin	MODERN SPECIES	118	PDP2 (ENSCCAG00000008632) #7	CDH16 (ENSCCAG00000028654) #8	RRAD (ENSCCAG00000035598) #9	CIAO2B (ENSCCAG00000037204) #10	CES2 (ENSCCAG00000037058) #11	CES4A (ENSCCAG00000035376) #13	CES3 (ENSCCAG00000019551) #12	CBFB (ENSCCAG00000036199) #14	ENSCCAG00000008806 #15	TRADD (ENSCCAG00000025054) #17	FBXL8 (ENSCCAG00000032746)	HSF4 (ENSCCAG00000018787) #18	NOL3 (ENSCCAG00000024743) #19	KIAA0895L (ENSCCAG00000028132) #20	EXOC3L1 (ENSCCAG00000030759) #21	E2F4 (ENSCCAG00000003067) #22	ELMO3 (ENSCCAG00000027018) #23	ENSCCAG00000022766 #24	TMEM208 (ENSCCAG00000033775) #25	FHOD1 (ENSCCAG00000033277) #26	SLC9A5 (ENSCCAG00000023939) #27	PLEKHG4 (ENSCCAG00000026268) #28	KCTD19 (ENSCCAG00000037027) #29	LRRC36 (ENSCCAG00000032482) #30	TPPP3 (ENSCCAG00000026155) #32	ZDHHC1 (ENSCCAG00000024396) #33	HSD11B2 (ENSCCAG00000032222) #34	ATP6V0D1 (ENSCCAG00000033213) #35	AGRP (ENSCCAG00000026443) #36	ENSCCAG00000024362	RIPOR1 (ENSCCAG00000029187) #37
Marmoset	MODERN SPECIES	12	CDH16 (ENSCJAG00000016616) #8	RRAD (ENSCJAG00000016611) #9	CIAO2B (ENSCJAG00000016595) #10	CES2 (ENSCJAG00000038169) #11	CES3 (ENSCJAG00000016564) #12	CES4A (ENSCJAG00000016544) #13	CBFB (ENSCJAG00000046152) #14	PHAF1 (ENSCJAG00000016510) #15	B3GNT9 (ENSCJAG00000041278) #16	TRADD (ENSCJAG00000016502) #17	FBXL8 (ENSCJAG00000016495)	HSF4 (ENSCJAG00000016481) #18	ENSCJAG00000016465 #19	MATCAP1 (ENSCJAG00000039578) #20	EXOC3L1 (ENSCJAG00000016422) #21	E2F4 (ENSCJAG00000016403) #22	ELMO3 (ENSCJAG00000016361) #23	ENSCJAG00000016352 #24	TMEM208 (ENSCJAG00000016332) #25	SLC9A5 (ENSCJAG00000016263) #27	PLEKHG4 (ENSCJAG00000016239) #28	KCTD19 (ENSCJAG00000016220) #29	LRRC36 (ENSCJAG00000016213) #30	TPPP3 (ENSCJAG00000042043) #32	ZDHHC1 (ENSCJAG00000016204) #33	HSD11B2 (ENSCJAG00000016198) #34	ATP6V0D1 (ENSCJAG00000016190) #35	AGRP (ENSCJAG00000016184) #36	RIPOR1 (ENSCJAG00000016148) #37	CTCF (ENSCJAG00000016139)	CARMIL2 (ENSCJAG00000016125)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1135	PDP2 (ENSANAG00000019612) #7	CDH16 (ENSANAG00000030845) #8	RRAD (ENSANAG00000030145) #9	CIAO2B (ENSANAG00000037535) #10	CES2 (ENSANAG00000038137) #11	CES3 (ENSANAG00000022725) #12	CES4A (ENSANAG00000037870) #13	CBFB (ENSANAG00000019257) #14	PHAF1 (ENSANAG00000037262) #15	TRADD (ENSANAG00000038062) #17	FBXL8 (ENSANAG00000005327)	HSF4 (ENSANAG00000023015) #18	ENSANAG00000028129 #19	MATCAP1 (ENSANAG00000028721) #20	EXOC3L1 (ENSANAG00000035083) #21	ENSANAG00000032362 #22	ELMO3 (ENSANAG00000034358) #23	ENSANAG00000034545 #24	TMEM208 (ENSANAG00000020556) #25	FHOD1 (ENSANAG00000025694) #26	SLC9A5 (ENSANAG00000035387) #27	PLEKHG4 (ENSANAG00000036092) #28	KCTD19 (ENSANAG00000021622) #29	LRRC36 (ENSANAG00000038452) #30	TPPP3 (ENSANAG00000024244) #32	ZDHHC1 (ENSANAG00000028213) #33	HSD11B2 (ENSANAG00000031199) #34	ATP6V0D1 (ENSANAG00000024349) #35	AGRP (ENSANAG00000025594) #36	RIPOR1 (ENSANAG00000035037) #37	CTCF (ENSANAG00000027330)
Mas night monkey	MODERN SPECIES	1333	NFE2L2 (ENSANAG00000023669)	HNRNPA3 (ENSANAG00000002931)	MTX2 (ENSANAG00000022501)	ENSANAG00000031061	HOXD1 (ENSANAG00000019775)	HOXD3 (ENSANAG00000026428)	HOXD4 (ENSANAG00000028028)	HOXD8 (ENSANAG00000026980)	HOXD9 (ENSANAG00000024699)	HOXD10 (ENSANAG00000025381)	HOXD11 (ENSANAG00000029678)	HOXD12 (ENSANAG00000008919)	HOXD13 (ENSANAG00000029500)	EVX2 (ENSANAG00000031929)	LNPK (ENSANAG00000019161)	ENSANAG00000021797 #22	ENSANAG00000023367	ENSANAG00000033889	ENSANAG00000037338	ENSANAG00000011341
Catarrhini	ANCESTRAL SPECIES	11	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00910000146698	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Hominoidea	ANCESTRAL SPECIES	9	ENSGT00390000017697.b #10	ENSGT00940000153793.d #11	ENSGT00910000146698	ENSGT00940000153793.c #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Hominidae	ANCESTRAL SPECIES	9	ENSGT00940000153793.d #11	ENSGT00910000146698	ENSGT00940000155200.p #12	ENSGT00940000153793.c #11	ENSGT00940000155200.o #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	19	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.d #11	ENSGT00940000155200.o #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Homo/Pan group	ANCESTRAL SPECIES	19	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.d #11	ENSGT00940000155200.o.a #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Pan	ANCESTRAL SPECIES	19	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.d #11	ENSGT00940000153793.c #11	ENSGT00940000155200.o.a #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	7	CA7 (ENSPPAG00000033884)	PDP2 (ENSPPAG00000001912) #7	CDH16 (ENSPPAG00000043698) #8	ENSPPAG00000032214 #9	CIAO2B (ENSPPAG00000024574) #10	ENSPPAG00000039720 #11	ENSPPAG00000035018 #14	PHAF1 (ENSPPAG00000038365) #15	B3GNT9 (ENSPPAG00000001847) #16	TRADD (ENSPPAG00000035660) #17	FBXL8 (ENSPPAG00000033828)	HSF4 (ENSPPAG00000036811) #18	NOL3 (ENSPPAG00000040533) #19	MATCAP1 (ENSPPAG00000003682) #20	EXOC3L1 (ENSPPAG00000027466) #21	ENSPPAG00000009557 #22	ELMO3 (ENSPPAG00000030509) #23	ENSPPAG00000040320 #24	TMEM208 (ENSPPAG00000027348) #25	FHOD1 (ENSPPAG00000036018) #26	SLC9A5 (ENSPPAG00000040056) #27	PLEKHG4 (ENSPPAG00000043758) #28	KCTD19 (ENSPPAG00000039548) #29	LRRC36 (ENSPPAG00000032136) #30	TPPP3 (ENSPPAG00000039712) #32	ENSPPAG00000030585 #33	HSD11B2 (ENSPPAG00000035249) #34	ENSPPAG00000031006	ATP6V0D1 (ENSPPAG00000039877) #35	AGRP (ENSPPAG00000040052) #36	RIPOR1 (ENSPPAG00000029650) #37
Bonobo	MODERN SPECIES	2	OR10A3 (ENSPPAG00000022802)	OR10A6 (ENSPPAG00000011852)	ENSPPAG00000038922	OR5P3 (ENSPPAG00000025230)	OR5P2 (ENSPPAG00000039252)	OVCH2 (ENSPPAG00000030544)	CYB5R2 (ENSPPAG00000043427)	PPFIBP2 (ENSPPAG00000040703)	OLFML1 (ENSPPAG00000037899)	SYT9 (ENSPPAG00000041481)	NLRP14 (ENSPPAG00000039939)	ZNF214 (ENSPPAG00000038017)	ZNF215 (ENSPPAG00000035352)	OR2D3 (ENSPPAG00000006922)	OR10A2 (ENSPPAG00000020673)	ENSPPAG00000008986 #22	OR10A5 (ENSPPAG00000013772)	OR6A2 (ENSPPAG00000009041)	OR2AG1 (ENSPPAG00000007655)	OR2AG2 (ENSPPAG00000005020)	ENSPPAG00000026745	MRPL17 (ENSPPAG00000038749)	DCHS1 (ENSPPAG00000038073)	TPP1 (ENSPPAG00000035179)	ENSPPAG00000036624	ILK (ENSPPAG00000029774)	RRP8 (ENSPPAG00000040792)	DNHD1 (ENSPPAG00000036498)	TIMM10B (ENSPPAG00000040105)	ARFIP2 (ENSPPAG00000042484)	TRIM3 (ENSPPAG00000036529)
Chimpanzee	MODERN SPECIES	7	CDH16 (ENSPTRG00000008205) #8	RRAD (ENSPTRG00000008207) #9	CIAO2B (ENSPTRG00000008208) #10	CES2 (ENSPTRG00000051277) #11	ENSPTRG00000008209 #11	CES3 (ENSPTRG00000008210) #12	CBFB (ENSPTRG00000042433) #14	PHAF1 (ENSPTRG00000008214) #15	B3GNT9 (ENSPTRG00000047547) #16	TRADD (ENSPTRG00000008215) #17	FBXL8 (ENSPTRG00000008216)	HSF4 (ENSPTRG00000034007) #18	NOL3 (ENSPTRG00000049746) #19	MATCAP1 (ENSPTRG00000031185) #20	EXOC3L1 (ENSPTRG00000008218) #21	E2F4 (ENSPTRG00000031180) #22	ELMO3 (ENSPTRG00000008220) #23	LRRC29 (ENSPTRG00000008221) #24	TMEM208 (ENSPTRG00000008222) #25	FHOD1 (ENSPTRG00000008223) #26	SLC9A5 (ENSPTRG00000008224) #27	PLEKHG4 (ENSPTRG00000008225) #28	KCTD19 (ENSPTRG00000008226) #29	LRRC36 (ENSPTRG00000008227) #30	TPPP3 (ENSPTRG00000050239) #32	ZDHHC1 (ENSPTRG00000008229) #33	HSD11B2 (ENSPTRG00000008230) #34	ENSPTRG00000049931	ATP6V0D1 (ENSPTRG00000008231) #35	AGRP (ENSPTRG00000008232) #36	RIPOR1 (ENSPTRG00000008233) #37
Human	MODERN SPECIES	7	CDH16 (ENSG00000166589) #8	RRAD (ENSG00000166592) #9	CIAO2B (ENSG00000166595) #10	CES2 (ENSG00000172831) #11	CES3 (ENSG00000172828) #12	CES4A (ENSG00000172824) #13	CBFB (ENSG00000067955) #14	PHAF1 (ENSG00000125149) #15	B3GNT9 (ENSG00000237172) #16	TRADD (ENSG00000102871) #17	FBXL8 (ENSG00000135722)	HSF4 (ENSG00000102878) #18	NOL3 (ENSG00000140939) #19	MATCAP1 (ENSG00000196123) #20	EXOC3L1 (ENSG00000179044) #21	E2F4 (ENSG00000205250) #22	ELMO3 (ENSG00000102890) #23	TMEM208 (ENSG00000168701) #25	FHOD1 (ENSG00000135723) #26	SLC9A5 (ENSG00000135740) #27	PLEKHG4 (ENSG00000196155) #28	KCTD19 (ENSG00000168676) #29	LRRC36 (ENSG00000159708) #30	TPPP3 (ENSG00000159713) #32	ZDHHC1 (ENSG00000159714) #33	HSD11B2 (ENSG00000176387) #34	ATP6V0D1 (ENSG00000159720) #35	AGRP (ENSG00000159723) #36	RIPOR1 (ENSG00000039523) #37	CTCF (ENSG00000102974)	CARMIL2 (ENSG00000159753)
Gorilla	MODERN SPECIES	7	CES2 (ENSGGOG00000008251) #11	ENSGGOG00000043424	ENSGGOG00000043733	ENSGGOG00000040837 #12	CES3 (ENSGGOG00000008262) #12	ENSGGOG00000008270 #13	CBFB (ENSGGOG00000043175) #14	PHAF1 (ENSGGOG00000011866) #15	B3GNT9 (ENSGGOG00000040003) #16	ENSGGOG00000011883 #17	FBXL8 (ENSGGOG00000011893)	HSF4 (ENSGGOG00000011899) #18	NOL3 (ENSGGOG00000012278) #19	MATCAP1 (ENSGGOG00000023625) #20	EXOC3L1 (ENSGGOG00000011912) #21	E2F4 (ENSGGOG00000011924) #22	ELMO3 (ENSGGOG00000011935) #23	ENSGGOG00000011956 #24	TMEM208 (ENSGGOG00000001482) #25	FHOD1 (ENSGGOG00000010001) #26	SLC9A5 (ENSGGOG00000010016) #27	PLEKHG4 (ENSGGOG00000015950) #28	KCTD19 (ENSGGOG00000015964) #29	LRRC36 (ENSGGOG00000008469) #30	TPPP3 (ENSGGOG00000008477) #32	ENSGGOG00000008484 #33	HSD11B2 (ENSGGOG00000012970) #34	ENSGGOG00000043327	ATP6V0D1 (ENSGGOG00000012974) #35	AGRP (ENSGGOG00000012981) #36	RIPOR1 (ENSGGOG00000011949) #37
Orangutan	MODERN SPECIES	7	RRAD (ENSPPYG00000007432) #9	CIAO2B (ENSPPYG00000041569) #10	ENSPPYG00000007434 #11	CES3 (ENSPPYG00000041300) #12	ENSPPYG00000007435 #12	CES4A (ENSPPYG00000007436) #13	CBFB (ENSPPYG00000007437) #14	PHAF1 (ENSPPYG00000007438) #15	B3GNT9 (ENSPPYG00000007439) #16	TRADD (ENSPPYG00000007440) #17	FBXL8 (ENSPPYG00000041495)	HSF4 (ENSPPYG00000007441) #18	ENSPPYG00000007442 #19	MATCAP1 (ENSPPYG00000007443) #20	EXOC3L1 (ENSPPYG00000007444) #21	E2F4 (ENSPPYG00000007445) #22	ELMO3 (ENSPPYG00000007446) #23	ENSPPYG00000007447 #24	TMEM208 (ENSPPYG00000033761) #25	SLC9A5 (ENSPPYG00000007450) #27	PLEKHG4 (ENSPPYG00000007451) #28	KCTD19 (ENSPPYG00000007453) #29	LRRC36 (ENSPPYG00000007454) #30	TPPP3 (ENSPPYG00000039268) #32	ENSPPYG00000007456 #33	HSD11B2 (ENSPPYG00000034934) #34	ENSPPYG00000040595	ATP6V0D1 (ENSPPYG00000007458) #35	AGRP (ENSPPYG00000007459) #36	CTCF (ENSPPYG00000007461)	CARMIL2 (ENSPPYG00000007462)
Gibbon	MODERN SPECIES	11	CA7 (ENSNLEG00000030802)	CDH16 (ENSNLEG00000004109) #8	RRAD (ENSNLEG00000004167) #9	CIAO2B (ENSNLEG00000004172) #10	ENSNLEG00000004181 #11	CES2 (ENSNLEG00000030391) #11	CES3 (ENSNLEG00000004206) #12	ENSNLEG00000004228 #13	CBFB (ENSNLEG00000004277) #14	PHAF1 (ENSNLEG00000004306) #15	TRADD (ENSNLEG00000004328) #17	FBXL8 (ENSNLEG00000004335)	HSF4 (ENSNLEG00000004338) #18	MATCAP1 (ENSNLEG00000004356) #20	EXOC3L1 (ENSNLEG00000004364) #21	E2F4 (ENSNLEG00000004342) #22	ELMO3 (ENSNLEG00000004393) #23	ENSNLEG00000004435 #24	ENSNLEG00000031742 #25	ENSNLEG00000031407 #26	ENSNLEG00000004480 #27	PLEKHG4 (ENSNLEG00000004488) #28	KCTD19 (ENSNLEG00000004620) #29	ENSNLEG00000035657 #30	TPPP3 (ENSNLEG00000004642) #32	ENSNLEG00000004659 #33	ENSNLEG00000004665	HSD11B2 (ENSNLEG00000004600) #34	ATP6V0D1 (ENSNLEG00000004667) #35	AGRP (ENSNLEG00000004727) #36	RIPOR1 (ENSNLEG00000004731) #37
Cercopithecidae	ANCESTRAL SPECIES	8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.e.a #11	ENSGT00910000146698	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Cercopithecinae	ANCESTRAL SPECIES	10	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.e.a #11	ENSGT00910000146698	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Vervet Monkey	MODERN SPECIES	24	CFDP1 (ENSCSAG00000003687)	BCAR1 (ENSCSAG00000003690)	ENSCSAG00000003696	ENSCSAG00000003711	ZFP1 (ENSCSAG00000003718)	LDHD (ENSCSAG00000003721)	CBFB (ENSCSAG00000003725) #14	B3GNT9 (ENSCSAG00000018474) #16	PHAF1 (ENSCSAG00000003732) #15	TRADD (ENSCSAG00000003737) #17	FBXL8 (ENSCSAG00000003742)	HSF4 (ENSCSAG00000003768) #18	ENSCSAG00000003782 #19	MATCAP1 (ENSCSAG00000003789) #20	EXOC3L1 (ENSCSAG00000003798) #21	E2F4 (ENSCSAG00000003814) #22	ELMO3 (ENSCSAG00000003824) #23	ENSCSAG00000003830 #24	ENSCSAG00000003834 #24	TMEM208 (ENSCSAG00000003843) #25	FHOD1 (ENSCSAG00000003848) #26	SLC9A5 (ENSCSAG00000003857) #27	PLEKHG4 (ENSCSAG00000003865) #28	KCTD19 (ENSCSAG00000003872) #29	LRRC36 (ENSCSAG00000003884) #30	TPPP3 (ENSCSAG00000003890) #32	ZDHHC1 (ENSCSAG00000003895) #33	HSD11B2 (ENSCSAG00000003897) #34	ATP6V0D1 (ENSCSAG00000003900) #35	AGRP (ENSCSAG00000003901) #36	RIPOR1 (ENSCSAG00000003905) #37
Cercopithecinae_a	ANCESTRAL SPECIES	10	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.e.a #11	ENSGT00910000146698	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Cercopithecinae_b	ANCESTRAL SPECIES	5	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.e.a #11	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Olive baboon	MODERN SPECIES	9	NAE1 (ENSPANG00000017004)	CA7 (ENSPANG00000019306)	PDP2 (ENSPANG00000008640) #7	CDH16 (ENSPANG00000015586) #8	RRAD (ENSPANG00000042893) #9	CIAO2B (ENSPANG00000013428) #10	CBFB (ENSPANG00000008068) #14	PHAF1 (ENSPANG00000018550) #15	B3GNT9 (ENSPANG00000011657) #16	TRADD (ENSPANG00000017334) #17	FBXL8 (ENSPANG00000013427)	HSF4 (ENSPANG00000005017) #18	NOL3 (ENSPANG00000030797) #19	MATCAP1 (ENSPANG00000035304) #20	EXOC3L1 (ENSPANG00000000502) #21	E2F4 (ENSPANG00000016794) #22	ELMO3 (ENSPANG00000005501) #23	ENSPANG00000031561 #24	TMEM208 (ENSPANG00000029479) #25	FHOD1 (ENSPANG00000000605) #26	SLC9A5 (ENSPANG00000016265) #27	PLEKHG4 (ENSPANG00000026235) #28	KCTD19 (ENSPANG00000034300) #29	LRRC36 (ENSPANG00000021733) #30	TPPP3 (ENSPANG00000018345) #32	ZDHHC1 (ENSPANG00000008638) #33	HSD11B2 (ENSPANG00000047862) #34	ATP6V0D1 (ENSPANG00000017898) #35	AGRP (ENSPANG00000024565) #36	RIPOR1 (ENSPANG00000008637) #37	CTCF (ENSPANG00000015703)
Cercopithecinae_d	ANCESTRAL SPECIES	4	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.e.a #11	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00910000147085	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Drill	MODERN SPECIES	1217							ENSMLEG00000037764 #14	PHAF1 (ENSMLEG00000029921) #15	B3GNT9 (ENSMLEG00000002033) #16	TRADD (ENSMLEG00000034770) #17	FBXL8 (ENSMLEG00000035933)	HSF4 (ENSMLEG00000032540) #18	ENSMLEG00000041719 #19	MATCAP1 (ENSMLEG00000036488) #20	EXOC3L1 (ENSMLEG00000027466) #21	E2F4 (ENSMLEG00000036642) #22	ELMO3 (ENSMLEG00000034728) #23	ENSMLEG00000040113 #24	TMEM208 (ENSMLEG00000012936) #25	FHOD1 (ENSMLEG00000043304) #26	SLC9A5 (ENSMLEG00000033811) #27	PLEKHG4 (ENSMLEG00000041775) #28	KCTD19 (ENSMLEG00000041644) #29	LRRC36 (ENSMLEG00000040310) #30	TPPP3 (ENSMLEG00000009666) #32	ZDHHC1 (ENSMLEG00000027489) #33	HSD11B2 (ENSMLEG00000031297) #34	ENSMLEG00000041928	ATP6V0D1 (ENSMLEG00000043793) #35	AGRP (ENSMLEG00000035909) #36	RIPOR1 (ENSMLEG00000035065) #37
Sooty mangabey	MODERN SPECIES	96	PDP2 (ENSCATG00000002549) #7	CDH16 (ENSCATG00000036211) #8	RRAD (ENSCATG00000034562) #9	CIAO2B (ENSCATG00000032819) #10	CES2 (ENSCATG00000029478) #11	ENSCATG00000027954 #13	CBFB (ENSCATG00000042676) #14	PHAF1 (ENSCATG00000033027) #15	B3GNT9 (ENSCATG00000000540) #16	TRADD (ENSCATG00000030076) #17	FBXL8 (ENSCATG00000038633)	HSF4 (ENSCATG00000042580) #18	ENSCATG00000034821 #19	MATCAP1 (ENSCATG00000037134) #20	EXOC3L1 (ENSCATG00000041980) #21	E2F4 (ENSCATG00000042556) #22	ELMO3 (ENSCATG00000034679) #23	ENSCATG00000033840 #24	TMEM208 (ENSCATG00000039336) #25	FHOD1 (ENSCATG00000036299) #26	SLC9A5 (ENSCATG00000038552) #27	PLEKHG4 (ENSCATG00000044215) #28	KCTD19 (ENSCATG00000037148) #29	LRRC36 (ENSCATG00000035252) #30	TPPP3 (ENSCATG00000019059) #32	ZDHHC1 (ENSCATG00000029639) #33	HSD11B2 (ENSCATG00000037152) #34	ATP6V0D1 (ENSCATG00000033064) #35	AGRP (ENSCATG00000042230) #36	RIPOR1 (ENSCATG00000038948) #37	CTCF (ENSCATG00000042738)
Macaca	ANCESTRAL SPECIES	8	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.e.a #11	ENSGT00910000146698	ENSGT00940000155200 #12	ENSGT00390000018132.f #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Pig-tailed macaque	MODERN SPECIES	178	RRAD (ENSMNEG00000041942) #9	CIAO2B (ENSMNEG00000034933) #10	CES2 (ENSMNEG00000032898) #11	ENSMNEG00000033775	ENSMNEG00000031450	ENSMNEG00000037132 #12	CBFB (ENSMNEG00000028964) #14	PHAF1 (ENSMNEG00000033604) #15	B3GNT9 (ENSMNEG00000006041) #16	TRADD (ENSMNEG00000018376) #17	FBXL8 (ENSMNEG00000016307)	HSF4 (ENSMNEG00000038020) #18	ENSMNEG00000030684 #19	MATCAP1 (ENSMNEG00000040545) #20	EXOC3L1 (ENSMNEG00000030051) #21	E2F4 (ENSMNEG00000025909) #22	ELMO3 (ENSMNEG00000037172) #23	ENSMNEG00000037287 #24	TMEM208 (ENSMNEG00000000037) #25	FHOD1 (ENSMNEG00000040309) #26	SLC9A5 (ENSMNEG00000041562) #27	PLEKHG4 (ENSMNEG00000030662) #28	KCTD19 (ENSMNEG00000041509) #29	LRRC36 (ENSMNEG00000038276) #30	TPPP3 (ENSMNEG00000029652) #32	ZDHHC1 (ENSMNEG00000040984) #33	HSD11B2 (ENSMNEG00000032697) #34	ATP6V0D1 (ENSMNEG00000030202) #35	AGRP (ENSMNEG00000028917) #36	RIPOR1 (ENSMNEG00000031800) #37	CTCF (ENSMNEG00000036416)
Macaca_a	ANCESTRAL SPECIES	14	ENSGT00940000159757	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.e.a #11	ENSGT00390000018132.f #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Rhesus	MODERN SPECIES	12	CDH16 (ENSMMUG00000016727) #8	RRAD (ENSMMUG00000049583) #9	CIAO2B (ENSMMUG00000010919) #10	CES2 (ENSMMUG00000022825) #11	ENSMMUG00000064237	ENSMMUG00000054948 #14	CBFB (ENSMMUG00000058815) #14	PHAF1 (ENSMMUG00000018102) #15	B3GNT9 (ENSMMUG00000007559) #16	TRADD (ENSMMUG00000060314) #17	FBXL8 (ENSMMUG00000050693)	HSF4 (ENSMMUG00000005906) #18	NOL3 (ENSMMUG00000020268) #19	MATCAP1 (ENSMMUG00000020266) #20	EXOC3L1 (ENSMMUG00000020254) #21	E2F4 (ENSMMUG00000020258) #22	ELMO3 (ENSMMUG00000020259) #23	LRRC29 (ENSMMUG00000020260) #24	TMEM208 (ENSMMUG00000020263) #25	FHOD1 (ENSMMUG00000018111) #26	SLC9A5 (ENSMMUG00000059990) #27	KCTD19 (ENSMMUG00000004971) #29	LRRC36 (ENSMMUG00000009821) #30	TPPP3 (ENSMMUG00000054637) #32	ZDHHC1 (ENSMMUG00000009825) #33	HSD11B2 (ENSMMUG00000008034) #34	ATP6V0D1 (ENSMMUG00000029105) #35	AGRP (ENSMMUG00000060341) #36	RIPOR1 (ENSMMUG00000017105) #37	CTCF (ENSMMUG00000009798)	CARMIL2 (ENSMMUG00000009799)
Rhinopithecus	ANCESTRAL SPECIES	25	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.e.a #11	ENSGT00940000153793.e.b #11	ENSGT00940000153793.f #11	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b.k #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Black snub-nosed monkey	MODERN SPECIES	1559						CES2 (ENSRBIG00000028932) #11	CBFB (ENSRBIG00000028183) #14	PHAF1 (ENSRBIG00000031729) #15	B3GNT9 (ENSRBIG00000041288) #16	TRADD (ENSRBIG00000033518) #17	HSF4 (ENSRBIG00000015925) #18	ENSRBIG00000038421 #19	ENSRBIG00000034061 #19	MATCAP1 (ENSRBIG00000036651) #20	EXOC3L1 (ENSRBIG00000031904) #21	E2F4 (ENSRBIG00000040599) #22	ELMO3 (ENSRBIG00000033071) #23	ENSRBIG00000023382 #24	TMEM208 (ENSRBIG00000036462) #25	FHOD1 (ENSRBIG00000028944) #26	SLC9A5 (ENSRBIG00000028965) #27	PLEKHG4 (ENSRBIG00000027622) #28	KCTD19 (ENSRBIG00000039801) #29	LRRC36 (ENSRBIG00000036501) #30	TPPP3 (ENSRBIG00000037427) #32	ZDHHC1 (ENSRBIG00000030016) #33	HSD11B2 (ENSRBIG00000033356) #34	ATP6V0D1 (ENSRBIG00000034525) #35	AGRP (ENSRBIG00000044991) #36	RIPOR1 (ENSRBIG00000032040) #37	CTCF (ENSRBIG00000034739)
Golden snub-nosed monkey	MODERN SPECIES	2988	CA7 (ENSRROG00000040146)	PDP2 (ENSRROG00000008872) #7	CDH16 (ENSRROG00000044530) #8	RRAD (ENSRROG00000038070) #9	CIAO2B (ENSRROG00000044649) #10	ENSRROG00000043998 #11	ENSRROG00000035237 #11	CBFB (ENSRROG00000031552) #14	ENSRROG00000031108 #15	TRADD (ENSRROG00000001491) #17	FBXL8 (ENSRROG00000034560)	HSF4 (ENSRROG00000042484) #18	ENSRROG00000033912 #19	MATCAP1 (ENSRROG00000012831) #20	EXOC3L1 (ENSRROG00000040665) #21	E2F4 (ENSRROG00000035670) #22	ELMO3 (ENSRROG00000044911) #23	ENSRROG00000031712 #24	TMEM208 (ENSRROG00000032781) #25	FHOD1 (ENSRROG00000033735) #26	SLC9A5 (ENSRROG00000045120) #27	PLEKHG4 (ENSRROG00000045715) #28	KCTD19 (ENSRROG00000033022) #29	LRRC36 (ENSRROG00000033554) #30	TPPP3 (ENSRROG00000036135) #32	ZDHHC1 (ENSRROG00000040272) #33	HSD11B2 (ENSRROG00000028099) #34	ATP6V0D1 (ENSRROG00000009060) #35	AGRP (ENSRROG00000043812) #36	RIPOR1 (ENSRROG00000031142) #37	CTCF (ENSRROG00000038473)
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Tree shrew	MODERN SPECIES	5263																ENSTBEG00000011108 #22	ELMO3 (ENSTBEG00000011307) #23	SLC9A5 (ENSTBEG00000011764) #27	PLEKHG4 (ENSTBEG00000012009) #28	KCTD19 (ENSTBEG00000012412) #29
Glires	ANCESTRAL SPECIES	6	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000164375	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Rodentia	ANCESTRAL SPECIES	8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000164375	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00390000017697.b #10	ENSGT00940000153793.l #11	ENSGT00940000153793.k #11	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005025467 #11	ENSSVLG00005025347 #11	ENSSVLG00005025098	CES3 (ENSSVLG00005024805) #12	CES4A (ENSSVLG00005024667) #13	ENSSVLG00005024618	CBFB (ENSSVLG00005024570) #14	PHAF1 (ENSSVLG00005024553) #15	B3GNT9 (ENSSVLG00005024534) #16	TRADD (ENSSVLG00005024499) #17	FBXL8 (ENSSVLG00005024480)	HSF4 (ENSSVLG00005024450) #18	ENSSVLG00005024414 #19	MATCAP1 (ENSSVLG00005024362) #20	EXOC3L1 (ENSSVLG00005024301) #21	ENSSVLG00005024234 #22	ELMO3 (ENSSVLG00005024014) #23	ENSSVLG00005023967 #24	TMEM208 (ENSSVLG00005023939) #25	SLC9A5 (ENSSVLG00005023832) #27	PLEKHG4 (ENSSVLG00005023652) #28	KCTD19 (ENSSVLG00005023552) #29	LRRC36 (ENSSVLG00005023340) #30	TPPP3 (ENSSVLG00005023292) #32	ZDHHC1 (ENSSVLG00005023237) #33	HSD11B2 (ENSSVLG00005023211) #34	ATP6V0D1 (ENSSVLG00005023162) #35	AGRP (ENSSVLG00005023129) #36	RIPOR1 (ENSSVLG00005023066) #37	CTCF (ENSSVLG00005023014)	CARMIL2 (ENSSVLG00005022765)
Eurasian red squirrel	MODERN SPECIES	1	TM4SF1 (ENSSVLG00005014530)	TM4SF4 (ENSSVLG00005014565)	IL12A (ENSSVLG00005014635)	ENSSVLG00005014764	ENSSVLG00005015250	ENSSVLG00005015377	MFSD1 (ENSSVLG00005015449)	RARRES1 (ENSSVLG00005015785)	GFM1 (ENSSVLG00005015861)	LXN (ENSSVLG00005004800)	MLF1 (ENSSVLG00005004886)	RSRC1 (ENSSVLG00005005040)	SHOX2 (ENSSVLG00005005099)	VEPH1 (ENSSVLG00005005203)	PTX3 (ENSSVLG00005005353)	ENSSVLG00005005378 #22	CCNL1 (ENSSVLG00005005434)	LEKR1 (ENSSVLG00005005558)	TIPARP (ENSSVLG00005005579)	ENSSVLG00005005598	KCNAB1 (ENSSVLG00005005761)	ENSSVLG00005006157	GMPS (ENSSVLG00005006221)	SLC33A1 (ENSSVLG00005006332)	C3orf33 (ENSSVLG00005006407)	ENSSVLG00005006455	PLCH1 (ENSSVLG00005006514)	STRIT1 (ENSSVLG00005006829)	MME (ENSSVLG00005006865)	ENSSVLG00005006949	GPR149 (ENSSVLG00005006960)
Marmotini	ANCESTRAL SPECIES	17	ENSGT00940000153793.l #11	ENSGT00940000153793.k.a.a.b.a #11	ENSGT00940000153793.k.a.a.a.b #11	ENSGT00940000164375.a	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Marmotini_b	ANCESTRAL SPECIES	7	ENSGT00940000153793.k.a.a.a.a.a.a #11	ENSGT00940000153793.k.a.a.b.a #11	ENSGT00940000153793.k.a.a.a.b #11	ENSGT00940000164375.a	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Arctic ground squirrel	MODERN SPECIES	575				ENSUPAG00010002247	CES3 (ENSUPAG00010002231) #12	CES4A (ENSUPAG00010002214) #13	CBFB (ENSUPAG00010002159) #14	PHAF1 (ENSUPAG00010002137) #15	B3GNT9 (ENSUPAG00010002133) #16	TRADD (ENSUPAG00010002125) #17	FBXL8 (ENSUPAG00010002122)	HSF4 (ENSUPAG00010001926) #18	ENSUPAG00010001909 #19	MATCAP1 (ENSUPAG00010001869) #20	EXOC3L1 (ENSUPAG00010001853) #21	E2F4 (ENSUPAG00010001834) #22	ELMO3 (ENSUPAG00010001733) #23	ENSUPAG00010001706 #24	TMEM208 (ENSUPAG00010001695) #25	FHOD1 (ENSUPAG00010001636) #26	SLC9A5 (ENSUPAG00010001612) #27	PLEKHG4 (ENSUPAG00010001495) #28	KCTD19 (ENSUPAG00010001430) #29	LRRC36 (ENSUPAG00010001167) #30	TPPP3 (ENSUPAG00010001128) #32	ZDHHC1 (ENSUPAG00010001056) #33	HSD11B2 (ENSUPAG00010001038) #34	ATP6V0D1 (ENSUPAG00010001017) #35	AGRP (ENSUPAG00010001009) #36	RIPOR1 (ENSUPAG00010000952) #37	CTCF (ENSUPAG00010000926)
Squirrel	MODERN SPECIES	75	ENSSTOG00000022937 #11	ENSSTOG00000027386 #11	ENSSTOG00000026289 #11	ENSSTOG00000025164	CES3 (ENSSTOG00000012032) #12	CES4A (ENSSTOG00000011337) #13	CBFB (ENSSTOG00000011344) #14	PHAF1 (ENSSTOG00000011346) #15	B3GNT9 (ENSSTOG00000028759) #16	TRADD (ENSSTOG00000011360) #17	FBXL8 (ENSSTOG00000026518)	HSF4 (ENSSTOG00000027009) #18	ENSSTOG00000022251 #19	MATCAP1 (ENSSTOG00000016431) #20	EXOC3L1 (ENSSTOG00000016432) #21	E2F4 (ENSSTOG00000016434) #22	ELMO3 (ENSSTOG00000026655) #23	ENSSTOG00000022552 #24	TMEM208 (ENSSTOG00000016436) #25	FHOD1 (ENSSTOG00000020262) #26	SLC9A5 (ENSSTOG00000016438) #27	ENSSTOG00000030446	ENSSTOG00000016440 #28	KCTD19 (ENSSTOG00000016442) #29	LRRC36 (ENSSTOG00000016443) #30	TPPP3 (ENSSTOG00000020378) #32	ZDHHC1 (ENSSTOG00000016445) #33	HSD11B2 (ENSSTOG00000016446) #34	ATP6V0D1 (ENSSTOG00000016447) #35	AGRP (ENSSTOG00000016448) #36	RIPOR1 (ENSSTOG00000025539) #37
Alpin marmot	MODERN SPECIES	43		ENSMMMG00000001034 #11	ENSMMMG00000000825 #11	ENSMMMG00000000634	CES3 (ENSMMMG00000000606) #12	CES4A (ENSMMMG00000000581) #13	CBFB (ENSMMMG00000000573) #14	PHAF1 (ENSMMMG00000000540) #15	B3GNT9 (ENSMMMG00000000534) #16	TRADD (ENSMMMG00000000522) #17	FBXL8 (ENSMMMG00000000509)	HSF4 (ENSMMMG00000000300) #18	ENSMMMG00000000263 #19	MATCAP1 (ENSMMMG00000000193) #20	EXOC3L1 (ENSMMMG00000000159) #21	E2F4 (ENSMMMG00000000134) #22	ELMO3 (ENSMMMG00000000043) #23	ENSMMMG00000000022 #24	TMEM208 (ENSMMMG00000015906) #25	FHOD1 (ENSMMMG00000015324) #26	SLC9A5 (ENSMMMG00000015303) #27	PLEKHG4 (ENSMMMG00000015239) #28	KCTD19 (ENSMMMG00000015200) #29	LRRC36 (ENSMMMG00000015167) #30	TPPP3 (ENSMMMG00000015157) #32	ZDHHC1 (ENSMMMG00000015133) #33	HSD11B2 (ENSMMMG00000015122) #34	ATP6V0D1 (ENSMMMG00000015116) #35	AGRP (ENSMMMG00000015111) #36	RIPOR1 (ENSMMMG00000015092) #37	ENSMMMG00000015080
Hystricomorpha	ANCESTRAL SPECIES	22	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.i.a #11	ENSGT00940000153793.j.a #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000042496 #11	ENSHGLG00000042617	ENSHGLG00000016814 #11	ENSHGLG00000012610 #12	CES4A (ENSHGLG00000033432) #13	CBFB (ENSHGLG00000050469) #14	ENSHGLG00000046177	ENSHGLG00000016123 #15	ENSHGLG00000009942	B3GNT9 (ENSHGLG00000035794) #16	FBXL8 (ENSHGLG00000019079)	HSF4 (ENSHGLG00000014438) #18	ENSHGLG00000037771 #19	MATCAP1 (ENSHGLG00000011035) #20	EXOC3L1 (ENSHGLG00000010315) #21	E2F4 (ENSHGLG00000014276) #22	ELMO3 (ENSHGLG00000014154) #23	ENSHGLG00000019291 #24	ENSHGLG00000014519	TMEM208 (ENSHGLG00000015097) #25	FHOD1 (ENSHGLG00000012638) #26	SLC9A5 (ENSHGLG00000012224) #27	PLEKHG4 (ENSHGLG00000010252) #28	KCTD19 (ENSHGLG00000012309) #29	LRRC36 (ENSHGLG00000013489) #30	TPPP3 (ENSHGLG00000011640) #32	ZDHHC1 (ENSHGLG00000012449) #33	HSD11B2 (ENSHGLG00000012026) #34	ATP6V0D1 (ENSHGLG00000011430) #35	AGRP (ENSHGLG00000010211) #36	RIPOR1 (ENSHGLG00000012465) #37
Hystricomorpha_a	ANCESTRAL SPECIES	22	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793.i.a #11	ENSGT00940000153793.j.a #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Guinea pig	MODERN SPECIES	22	ENSCPOG00000034407 #11	ENSCPOG00000005610 #11	ENSCPOG00000034227	ENSCPOG00000039038 #11	CES3 (ENSCPOG00000033893) #12	CES4A (ENSCPOG00000005603) #13	ENSCPOG00000010825 #14	PHAF1 (ENSCPOG00000010828) #15	B3GNT9 (ENSCPOG00000026402) #16	TRADD (ENSCPOG00000010831) #17	FBXL8 (ENSCPOG00000010832)	HSF4 (ENSCPOG00000010834) #18	ENSCPOG00000004946 #19	MATCAP1 (ENSCPOG00000037427) #20	EXOC3L1 (ENSCPOG00000010839) #21	E2F4 (ENSCPOG00000010845) #22	ELMO3 (ENSCPOG00000010852) #23	ENSCPOG00000025275 #24	TMEM208 (ENSCPOG00000010856) #25	FHOD1 (ENSCPOG00000010858) #26	SLC9A5 (ENSCPOG00000010865) #27	PLEKHG4 (ENSCPOG00000024564) #28	KCTD19 (ENSCPOG00000010870) #29	LRRC36 (ENSCPOG00000010878) #30	TPPP3 (ENSCPOG00000010883) #32	ZDHHC1 (ENSCPOG00000040494) #33	HSD11B2 (ENSCPOG00000010894) #34	ATP6V0D1 (ENSCPOG00000010904) #35	AGRP (ENSCPOG00000010909) #36	RIPOR1 (ENSCPOG00000004238) #37	CTCF (ENSCPOG00000010698)
Hystricomorpha_b	ANCESTRAL SPECIES	15	ENSGT00940000153793.i.a #11	ENSGT00940000153793.i.b.c #11	ENSGT00940000164375	ENSGT00940000153793.j.a #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Long-tailed chinchilla	MODERN SPECIES	191			ENSCLAG00000004810	ENSCLAG00000004482 #11	ENSCLAG00000004579 #11	CES3 (ENSCLAG00000003979) #12	CES4A (ENSCLAG00000003809) #13	CBFB (ENSCLAG00000003276) #14	PHAF1 (ENSCLAG00000011848) #15	TRADD (ENSCLAG00000013206) #17	FBXL8 (ENSCLAG00000012818)	HSF4 (ENSCLAG00000011421) #18	ENSCLAG00000010849 #19	MATCAP1 (ENSCLAG00000008743) #20	EXOC3L1 (ENSCLAG00000008542) #21	E2F4 (ENSCLAG00000008447) #22	ELMO3 (ENSCLAG00000009770) #23	ENSCLAG00000009119 #24	TMEM208 (ENSCLAG00000008905) #25	FHOD1 (ENSCLAG00000015436) #26	SLC9A5 (ENSCLAG00000013034) #27	ENSCLAG00000006869 #28	KCTD19 (ENSCLAG00000005454) #29	LRRC36 (ENSCLAG00000004344) #30	TPPP3 (ENSCLAG00000004256) #32	ZDHHC1 (ENSCLAG00000004092) #33	HSD11B2 (ENSCLAG00000003883) #34	ATP6V0D1 (ENSCLAG00000003151) #35	AGRP (ENSCLAG00000012740) #36	RIPOR1 (ENSCLAG00000016244) #37	ENSCLAG00000008635
Degu	MODERN SPECIES	52	ENSODEG00000015554 #11	ENSODEG00000017576 #11	ENSODEG00000016121	ENSODEG00000015656 #11	CES3 (ENSODEG00000016302) #12	CES4A (ENSODEG00000015763) #13	CBFB (ENSODEG00000016515) #14	PHAF1 (ENSODEG00000015277) #15	B3GNT9 (ENSODEG00000015783) #16	TRADD (ENSODEG00000016273) #17	FBXL8 (ENSODEG00000016675)	HSF4 (ENSODEG00000016261) #18	ENSODEG00000015937 #19	MATCAP1 (ENSODEG00000017236) #20	EXOC3L1 (ENSODEG00000015825) #21	ENSODEG00000015743 #22	ELMO3 (ENSODEG00000015567) #23	ENSODEG00000015353 #24	TMEM208 (ENSODEG00000015620) #25	FHOD1 (ENSODEG00000015610) #26	SLC9A5 (ENSODEG00000016195) #27	ENSODEG00000015992 #28	ENSODEG00000016452	KCTD19 (ENSODEG00000016312) #29	LRRC36 (ENSODEG00000015398) #30	TPPP3 (ENSODEG00000016027) #32	ZDHHC1 (ENSODEG00000015615) #33	HSD11B2 (ENSODEG00000015795) #34	ATP6V0D1 (ENSODEG00000016167) #35	AGRP (ENSODEG00000015217) #36	ENSODEG00000020348
Rodentia_B	ANCESTRAL SPECIES	21	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36
Kangaroo rat	MODERN SPECIES	337	Nae1 (ENSDORG00000013530)	Car7 (ENSDORG00000013532)	Pdp2 (ENSDORG00000024268) #7	Rrad (ENSDORG00000013540) #9	ENSDORG00000013543 #10	ENSDORG00000029390	Cbfb (ENSDORG00000029036) #14	Phaf1 (ENSDORG00000015125) #15	B3gnt9 (ENSDORG00000030078) #16	Tradd (ENSDORG00000015126) #17	Fbxl8 (ENSDORG00000015127)	Hsf4 (ENSDORG00000015128) #18	Nol3 (ENSDORG00000026944) #19	Matcap1 (ENSDORG00000015129) #20	Exoc3l (ENSDORG00000015130) #21	ENSDORG00000015131 #22	Elmo3 (ENSDORG00000015132) #23	Fbxl9 (ENSDORG00000015136) #24	Tmem208 (ENSDORG00000013263) #25	Fhod1 (ENSDORG00000013253) #26	Slc9a5 (ENSDORG00000005859) #27	ENSDORG00000005865 #28	Kctd19 (ENSDORG00000005868) #29	Lrrc36 (ENSDORG00000005869) #30	Tppp3 (ENSDORG00000005871) #32	Zdhhc1 (ENSDORG00000003276) #33	Hsd11b2 (ENSDORG00000013965) #34	Atp6v0d1 (ENSDORG00000013966) #35	Agrp (ENSDORG00000013972) #36	Ripor1 (ENSDORG00000014643) #37	Ctcf (ENSDORG00000000111)
Myomorpha	ANCESTRAL SPECIES	22	ENSGT00390000017697.b #10	ENSGT00940000153793.g #11	ENSGT00940000153793.h #11	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00900000143429	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36
Muroidea	ANCESTRAL SPECIES	19	ENSGT00390000017697.b #10	ENSGT00940000153793.g #11	ENSGT00940000164375	ENSGT00940000153793.h #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1060		ENSNGAG00000015448 #11	ENSNGAG00000013659 #11	Ces2h (ENSNGAG00000001203)	ENSNGAG00000001031 #12	Ces4a (ENSNGAG00000015115) #13	Cbfb (ENSNGAG00000009578) #14	Phaf1 (ENSNGAG00000000365) #15	B3gnt9 (ENSNGAG00000015451) #16	Tradd (ENSNGAG00000014423) #17	Fbxl8 (ENSNGAG00000014216)	Hsf4 (ENSNGAG00000014341) #18	Nol3 (ENSNGAG00000010053) #19	Matcap1 (ENSNGAG00000008649) #20	Exoc3l (ENSNGAG00000011128) #21	ENSNGAG00000009573 #22	Elmo3 (ENSNGAG00000006509) #23	ENSNGAG00000019899 #24	Tmem208 (ENSNGAG00000012064) #25	Fhod1 (ENSNGAG00000011675) #26	Slc9a5 (ENSNGAG00000011230) #27	Plekhg4 (ENSNGAG00000013487) #28	Kctd19 (ENSNGAG00000017054) #29	Lrrc36 (ENSNGAG00000020479) #30	Tppp3 (ENSNGAG00000019748) #32	Zdhhc1 (ENSNGAG00000017132) #33	Hsd11b2 (ENSNGAG00000013345) #34	Atp6v0d1 (ENSNGAG00000013880) #35	Agrp (ENSNGAG00000011732) #36	Ripor1 (ENSNGAG00000012186) #37	Ctcf (ENSNGAG00000006559)
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00940000153793.h.c.a.b.a #11	ENSGT00940000153793.h.c.a.b.b #11	ENSGT00940000153793.h.c.a.a.a #11	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Murinae	ANCESTRAL SPECIES	15	ENSGT00940000153793.h.c.a.b.a #11	ENSGT00940000153793.h.c.a.b.b #11	ENSGT00940000153793.h.c.a.a.a.b #11	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Mus	ANCESTRAL SPECIES	6	ENSGT00940000153793.h.c.a.b.a #11	ENSGT00940000153793.h.c.a.b.b #11	ENSGT00940000153793.h.c.a.a.a.b #11	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000153793.h.c.a.b.a #11	ENSGT00940000153793.h.c.a.b.b #11	ENSGT00940000153793.h.c.a.a.a.b #11	ENSGT00940000164375	ENSGT00940000155200.m.b #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000153793.h.c.a.b.a #11	ENSGT00940000153793.h.c.a.b.b #11	ENSGT00940000153793.h.c.a.a.a.b #11	ENSGT00940000164375	ENSGT00940000155200.m.b #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Mouse	MODERN SPECIES	17	Ces2f (ENSMUSG00000062826) #11	Ces2g (ENSMUSG00000031877) #11	Ces2h (ENSMUSG00000091813)	Ces3a (ENSMUSG00000069922) #12	Ces3b (ENSMUSG00000062181) #12	Ces4a (ENSMUSG00000060560) #13	Cbfb (ENSMUSG00000031885) #14	Phaf1 (ENSMUSG00000031889) #15	B3gnt9 (ENSMUSG00000069920) #16	Tradd (ENSMUSG00000031887) #17	Fbxl8 (ENSMUSG00000033313)	Hsf4 (ENSMUSG00000033249) #18	Nol3 (ENSMUSG00000014776) #19	Matcap1 (ENSMUSG00000014837) #20	Exoc3l (ENSMUSG00000043251) #21	E2f4 (ENSMUSG00000014859) #22	Elmo3 (ENSMUSG00000014791) #23	Fbxl9 (ENSMUSG00000041679) #24	Tmem208 (ENSMUSG00000014856) #25	Fhod1 (ENSMUSG00000014778) #26	Slc9a5 (ENSMUSG00000014786) #27	Plekhg4 (ENSMUSG00000014782) #28	Kctd19 (ENSMUSG00000051648) #29	Lrrc36 (ENSMUSG00000054320) #30	Tppp3 (ENSMUSG00000014846) #32	Zdhhc1 (ENSMUSG00000039199) #33	Hsd11b2 (ENSMUSG00000031891) #34	Atp6v0d1 (ENSMUSG00000013160) #35	Agrp (ENSMUSG00000005705) #36	Ripor1 (ENSMUSG00000038604) #37	Ctcf (ENSMUSG00000005698)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000153793.h.c.a.b.a #11	ENSGT00940000153793.h.c.a.b.b #11	ENSGT00940000153793.h.c.a.a.a.b #11	ENSGT00940000164375	ENSGT00940000155200.m.b #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Steppe mouse	MODERN SPECIES	2682						Ces4a (ENSMSIG00000013129) #13	Cbfb (ENSMSIG00000013151) #14	Phaf1 (ENSMSIG00000013286) #15	B3gnt9 (ENSMSIG00000013307) #16	Tradd (ENSMSIG00000013313) #17	Fbxl8 (ENSMSIG00000013320)	Hsf4 (ENSMSIG00000013332) #18	Nol3 (ENSMSIG00000014052) #19	Matcap1 (ENSMSIG00000014061) #20	Exoc3l (ENSMSIG00000014129) #21	E2f4 (ENSMSIG00000014157) #22	Elmo3 (ENSMSIG00000014196) #23	Fbxl9 (ENSMSIG00000014362) #24	ENSMSIG00000014410 #25	Fhod1 (ENSMSIG00000014442) #26	Slc9a5 (ENSMSIG00000015767) #27	Plekhg4 (ENSMSIG00000015844) #28	Kctd19 (ENSMSIG00000016043) #29	Lrrc36 (ENSMSIG00000016086) #30	Tppp3 (ENSMSIG00000016207) #32	Zdhhc1 (ENSMSIG00000016223) #33	Hsd11b2 (ENSMSIG00000016242) #34	Atp6v0d1 (ENSMSIG00000016254) #35	Ripor1 (ENSMSIG00000016315) #37	Agrp (ENSMSIG00000016436) #36	Ctcf (ENSMSIG00000016451)
spretus	MODERN SPECIES	17	Ces2f (MGP_SPRETEiJ_G0032576) #11	Ces2g (MGP_SPRETEiJ_G0032577) #11	Ces2h (MGP_SPRETEiJ_G0032578)	MGP_SPRETEiJ_G0032579 #12	MGP_SPRETEiJ_G0032580 #12	Ces4a (MGP_SPRETEiJ_G0032581) #13	Cbfb (MGP_SPRETEiJ_G0032582) #14	Phaf1 (MGP_SPRETEiJ_G0032583) #15	B3gnt9 (MGP_SPRETEiJ_G0032584) #16	Tradd (MGP_SPRETEiJ_G0032585) #17	Fbxl8 (MGP_SPRETEiJ_G0032586)	Hsf4 (MGP_SPRETEiJ_G0032587) #18	Nol3 (MGP_SPRETEiJ_G0032588) #19	Matcap1 (MGP_SPRETEiJ_G0032589) #20	Exoc3l (MGP_SPRETEiJ_G0032590) #21	E2f4 (MGP_SPRETEiJ_G0032591) #22	Elmo3 (MGP_SPRETEiJ_G0032592) #23	MGP_SPRETEiJ_G0032593 #24	Tmem208 (MGP_SPRETEiJ_G0032594) #25	MGP_SPRETEiJ_G0032595 #26	Slc9a5 (MGP_SPRETEiJ_G0032596) #27	Plekhg4 (MGP_SPRETEiJ_G0032597) #28	Kctd19 (MGP_SPRETEiJ_G0032598) #29	Lrrc36 (MGP_SPRETEiJ_G0032599) #30	Tppp3 (MGP_SPRETEiJ_G0032600) #32	Zdhhc1 (MGP_SPRETEiJ_G0032601) #33	Hsd11b2 (MGP_SPRETEiJ_G0032602) #34	Atp6v0d1 (MGP_SPRETEiJ_G0032603) #35	Agrp (MGP_SPRETEiJ_G0032604) #36	Ripor1 (MGP_SPRETEiJ_G0032605) #37	Ctcf (MGP_SPRETEiJ_G0032606)
Ryukyu mouse	MODERN SPECIES	17	Ces2f (MGP_CAROLIEiJ_G0031458) #11	Ces2g (MGP_CAROLIEiJ_G0031459) #11	MGP_CAROLIEiJ_G0031460 #11	Ces2h (MGP_CAROLIEiJ_G0031461)	MGP_CAROLIEiJ_G0031462 #12	Ces4a (MGP_CAROLIEiJ_G0031463) #13	Cbfb (MGP_CAROLIEiJ_G0031464) #14	Phaf1 (MGP_CAROLIEiJ_G0031465) #15	B3gnt9 (MGP_CAROLIEiJ_G0031466) #16	Tradd (MGP_CAROLIEiJ_G0031467) #17	Fbxl8 (MGP_CAROLIEiJ_G0031468)	Hsf4 (MGP_CAROLIEiJ_G0031469) #18	Nol3 (MGP_CAROLIEiJ_G0031470) #19	Matcap1 (MGP_CAROLIEiJ_G0031471) #20	Exoc3l (MGP_CAROLIEiJ_G0031472) #21	E2f4 (MGP_CAROLIEiJ_G0031473) #22	Elmo3 (MGP_CAROLIEiJ_G0031474) #23	MGP_CAROLIEiJ_G0031475 #24	Tmem208 (MGP_CAROLIEiJ_G0031476) #25	Fhod1 (MGP_CAROLIEiJ_G0031477) #26	Slc9a5 (MGP_CAROLIEiJ_G0031478) #27	Plekhg4 (MGP_CAROLIEiJ_G0031479) #28	Kctd19 (MGP_CAROLIEiJ_G0031480) #29	Lrrc36 (MGP_CAROLIEiJ_G0031481) #30	Tppp3 (MGP_CAROLIEiJ_G0031482) #32	Zdhhc1 (MGP_CAROLIEiJ_G0031483) #33	Hsd11b2 (MGP_CAROLIEiJ_G0031484) #34	Atp6v0d1 (MGP_CAROLIEiJ_G0031485) #35	Agrp (MGP_CAROLIEiJ_G0031486) #36	Ripor1 (MGP_CAROLIEiJ_G0031487) #37	Ctcf (MGP_CAROLIEiJ_G0031488)
Shrew mouse	MODERN SPECIES	12	Ces2f (MGP_PahariEiJ_G0023058) #11	Ces2g (MGP_PahariEiJ_G0023059) #11	Ces2h (MGP_PahariEiJ_G0023060)	MGP_PahariEiJ_G0023061 #12	MGP_PahariEiJ_G0023062 #12	Ces4a (MGP_PahariEiJ_G0023063) #13	Cbfb (MGP_PahariEiJ_G0023064) #14	Phaf1 (MGP_PahariEiJ_G0023065) #15	B3gnt9 (MGP_PahariEiJ_G0023066) #16	Tradd (MGP_PahariEiJ_G0023067) #17	Fbxl8 (MGP_PahariEiJ_G0023068)	Hsf4 (MGP_PahariEiJ_G0023069) #18	Nol3 (MGP_PahariEiJ_G0023070) #19	Matcap1 (MGP_PahariEiJ_G0023071) #20	Exoc3l (MGP_PahariEiJ_G0023072) #21	E2f4 (MGP_PahariEiJ_G0023073) #22	Elmo3 (MGP_PahariEiJ_G0023074) #23	Fbxl9 (MGP_PahariEiJ_G0023075) #24	Tmem208 (MGP_PahariEiJ_G0023076) #25	Fhod1 (MGP_PahariEiJ_G0023077) #26	Slc9a5 (MGP_PahariEiJ_G0023078) #27	Plekhg4 (MGP_PahariEiJ_G0023079) #28	Kctd19 (MGP_PahariEiJ_G0023080) #29	MGP_PahariEiJ_G0023081 #30	Tppp3 (MGP_PahariEiJ_G0023082) #32	Zdhhc1 (MGP_PahariEiJ_G0023083) #33	Hsd11b2 (MGP_PahariEiJ_G0023084) #34	Atp6v0d1 (MGP_PahariEiJ_G0023085) #35	Agrp (MGP_PahariEiJ_G0023086) #36	Ripor1 (MGP_PahariEiJ_G0023087) #37	Ctcf (MGP_PahariEiJ_G0023088)
Rat	MODERN SPECIES	10	Rps27a-ps6 (ENSRNOG00000029317)	ENSRNOG00000070405	Slc25a36l1 (ENSRNOG00000054284)	Ces2g (ENSRNOG00000070043) #11	Ces2h (ENSRNOG00000039079)	ENSRNOG00000066514 #12	Ces4a (ENSRNOG00000014257) #13	Cbfb (ENSRNOG00000014647) #14	Phaf1 (ENSRNOG00000014668) #15	B3gnt9 (ENSRNOG00000053895) #16	Tradd (ENSRNOG00000015179) #17	Fbxl8 (ENSRNOG00000015242)	Hsf4 (ENSRNOG00000015253) #18	Nol3 (ENSRNOG00000015588) #19	Matcap1 (ENSRNOG00000015625) #20	E2f4 (ENSRNOG00000015708) #22	Elmo3 (ENSRNOG00000015800) #23	Lrrc29 (ENSRNOG00000025231) #24	Tmem208 (ENSRNOG00000015974) #25	Fhod1 (ENSRNOG00000054625) #26	Slc9a5 (ENSRNOG00000028844) #27	Plekhg4 (ENSRNOG00000016479) #28	Kctd19 (ENSRNOG00000016760) #29	Lrrc36 (ENSRNOG00000016854) #30	Tppp3 (ENSRNOG00000016890) #32	Zdhhc1 (ENSRNOG00000017045) #33	Hsd11b2 (ENSRNOG00000017084) #34	Atp6v0d1 (ENSRNOG00000017235) #35	Agrp (ENSRNOG00000039001) #36	ENSRNOG00000064062	Ripor1 (ENSRNOG00000017604) #37
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000153793.h.c.a.b.a #11	ENSGT00940000153793.h.c.a.b.b #11	ENSGT00940000153793.h.c.a.a.a.d #11	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Cricetinae	ANCESTRAL SPECIES	16	ENSGT00940000153793.h.c.a.b.a #11	ENSGT00940000153793.h.c.a.b.b #11	ENSGT00940000153793.h.c.a.a.a.d #11	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Chinese hamster chok1gshd	MODERN SPECIES	112	ENSCGRG00001011776 #11	Ces2h (ENSCGRG00001009506)	ENSCGRG00001019809 #11	ENSCGRG00001009474	ENSCGRG00001015634 #12	Ces4a (ENSCGRG00001001471) #13	Cbfb (ENSCGRG00001022815) #14	Phaf1 (ENSCGRG00001006064) #15	B3gnt9 (ENSCGRG00001019496) #16	Tradd (ENSCGRG00001011379) #17	Fbxl8 (ENSCGRG00001016684)	Hsf4 (ENSCGRG00001010856) #18	Nol3 (ENSCGRG00001016708) #19	Matcap1 (ENSCGRG00001022963) #20	Exoc3l (ENSCGRG00001003705) #21	E2f4 (ENSCGRG00001008394) #22	Elmo3 (ENSCGRG00001001125) #23	Fbxl9 (ENSCGRG00001000209) #24	Tmem208 (ENSCGRG00001009390) #25	Fhod1 (ENSCGRG00001019021) #26	Slc9a5 (ENSCGRG00001000242) #27	Plekhg4 (ENSCGRG00001016429) #28	Kctd19 (ENSCGRG00001024518) #29	Lrrc36 (ENSCGRG00001000114) #30	Tppp3 (ENSCGRG00001012944) #32	Zdhhc1 (ENSCGRG00001006487) #33	Hsd11b2 (ENSCGRG00001022477) #34	Atp6v0d1 (ENSCGRG00001014538) #35	Agrp (ENSCGRG00001016032) #36	Ripor1 (ENSCGRG00001017908) #37	Ctcf (ENSCGRG00001006622)
Golden Hamster	MODERN SPECIES	677	ENSMAUG00000014101 #11	Ces2e (ENSMAUG00000014921) #11	ENSMAUG00000018177 #11	Ces2h (ENSMAUG00000000063)	ENSMAUG00000014836 #12	Ces4a (ENSMAUG00000018020) #13	Cbfb (ENSMAUG00000017365) #14	Phaf1 (ENSMAUG00000000635) #15	B3gnt9 (ENSMAUG00000000090) #16	Tradd (ENSMAUG00000000327) #17	Fbxl8 (ENSMAUG00000018497)	Hsf4 (ENSMAUG00000000872) #18	Nol3 (ENSMAUG00000001852) #19	Matcap1 (ENSMAUG00000002709) #20	Exoc3l (ENSMAUG00000000438) #21	ENSMAUG00000001090 #22	ENSMAUG00000003972	Lrrn3 (ENSMAUG00000006396)	Dock4 (ENSMAUG00000004565)	Zfp277 (ENSMAUG00000009201)	ENSMAUG00000012490	Ifrd1 (ENSMAUG00000013118)	Lsmem1 (ENSMAUG00000013434)	Scin (ENSMAUG00000010111)	Arl4a (ENSMAUG00000013648)	Etv1 (ENSMAUG00000015439)	ENSMAUG00000017823	Dgkb (ENSMAUG00000014209)	Agmo (ENSMAUG00000000152)	Meox2 (ENSMAUG00000015354)	Crppa (ENSMAUG00000014377)
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00940000153793.h.c.a.a.a.c.a #11	ENSGT00940000153793.h.c.a.b.a #11	ENSGT00940000153793.h.c.a.b.b #11	ENSGT00940000164375	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00900000143253	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37
Prairie vole	MODERN SPECIES	12	Ciao2b (ENSMOCG00000006278) #10	Ces2a (ENSMOCG00000003082) #11	ENSMOCG00000002668 #11	Ces2h (ENSMOCG00000001262)	ENSMOCG00000018149 #12	Ces4a (ENSMOCG00000021744) #13	Cbfb (ENSMOCG00000013533) #14	Phaf1 (ENSMOCG00000008111) #15	B3gnt9 (ENSMOCG00000008518) #16	Tradd (ENSMOCG00000014235) #17	Fbxl8 (ENSMOCG00000005462)	Hsf4 (ENSMOCG00000017670) #18	Nol3 (ENSMOCG00000013389) #19	Matcap1 (ENSMOCG00000020057) #20	Exoc3l (ENSMOCG00000017278) #21	E2f4 (ENSMOCG00000006353) #22	Elmo3 (ENSMOCG00000009955) #23	ENSMOCG00000020837 #24	ENSMOCG00000021484	ENSMOCG00000020885 #25	Fhod1 (ENSMOCG00000015100) #26	Slc9a5 (ENSMOCG00000000567) #27	Plekhg4 (ENSMOCG00000021633) #28	Kctd19 (ENSMOCG00000013085) #29	Lrrc36 (ENSMOCG00000001566) #30	Tppp3 (ENSMOCG00000022557) #32	Zdhhc1 (ENSMOCG00000022202) #33	Hsd11b2 (ENSMOCG00000002599) #34	ENSMOCG00000001313 #35	Agrp (ENSMOCG00000008086) #36	Ripor1 (ENSMOCG00000013026) #37
Northern American deer mouse	MODERN SPECIES	18	ENSPEMG00000024621 #11	ENSPEMG00000028995 #11	ENSPEMG00000027583 #11	Ces2h (ENSPEMG00000028141)	ENSPEMG00000011511 #12	Ces4a (ENSPEMG00000011474) #13	Cbfb (ENSPEMG00000001647) #14	Phaf1 (ENSPEMG00000011386) #15	B3gnt9 (ENSPEMG00000025933) #16	Tradd (ENSPEMG00000009250) #17	Fbxl8 (ENSPEMG00000016420)	Hsf4 (ENSPEMG00000008346) #18	Nol3 (ENSPEMG00000003782) #19	Matcap1 (ENSPEMG00000008792) #20	Exoc3l (ENSPEMG00000015025) #21	E2f4 (ENSPEMG00000003342) #22	Elmo3 (ENSPEMG00000009050) #23	Fbxl9 (ENSPEMG00000017442) #24	Tmem208 (ENSPEMG00000011151) #25	Fhod1 (ENSPEMG00000024184) #26	Slc9a5 (ENSPEMG00000000684) #27	Plekhg4 (ENSPEMG00000002713) #28	Kctd19 (ENSPEMG00000012851) #29	Lrrc36 (ENSPEMG00000016059) #30	Tppp3 (ENSPEMG00000016560) #32	Zdhhc1 (ENSPEMG00000014208) #33	Hsd11b2 (ENSPEMG00000014235) #34	Atp6v0d1 (ENSPEMG00000010243) #35	Agrp (ENSPEMG00000026382) #36	Ripor1 (ENSPEMG00000014437) #37	Ctcf (ENSPEMG00000018300)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	67	Gcc1 (ENSJJAG00000000812)	Grm8 (ENSJJAG00000016613)	ENSJJAG00000010202	Gpr37 (ENSJJAG00000014629)	ENSJJAG00000011611	Tmem229a (ENSJJAG00000012347)	ENSJJAG00000011717	ENSJJAG00000022467	Hyal4 (ENSJJAG00000020961)	Hyal6 (ENSJJAG00000018979)	Wasl (ENSJJAG00000010164)	Lmod2 (ENSJJAG00000001036)	Asb15 (ENSJJAG00000012943)	ENSJJAG00000010459	Slc13a1 (ENSJJAG00000022062)	ENSJJAG00000010213 #22	Tas2r118 (ENSJJAG00000000517)	ENSJJAG00000021889	Rnf148 (ENSJJAG00000020410)	Rnf133 (ENSJJAG00000005201)	Cadps2 (ENSJJAG00000016732)	Fezf1 (ENSJJAG00000014803)	Aass (ENSJJAG00000003015)	Ptprz1 (ENSJJAG00000014324)	ENSJJAG00000018547	ENSJJAG00000020378	Fam3c (ENSJJAG00000019764)	Wnt16 (ENSJJAG00000016207)	ENSJJAG00000013375	Cped1 (ENSJJAG00000023207)	Ing3 (ENSJJAG00000007662)
Lesser Egyptian jerboa	MODERN SPECIES	85	Lepr (ENSJJAG00000001138)	ENSJJAG00000024179	ENSJJAG00000023828	ENSJJAG00000014277	Ak4 (ENSJJAG00000014122)	ENSJJAG00000010970	Cbfb (ENSJJAG00000013223) #14	ENSJJAG00000012442 #15	B3gnt9 (ENSJJAG00000023578) #16	Tradd (ENSJJAG00000008375) #17	Fbxl8 (ENSJJAG00000021256)	Hsf4 (ENSJJAG00000001368) #18	Nol3 (ENSJJAG00000024314) #19	Matcap1 (ENSJJAG00000012976) #20	Exoc3l (ENSJJAG00000020372) #21	ENSJJAG00000013722 #22	Elmo3 (ENSJJAG00000013057) #23	Fbxl9 (ENSJJAG00000014941) #24	ENSJJAG00000023968 #25	Fhod1 (ENSJJAG00000000338) #26	Slc9a5 (ENSJJAG00000007169) #27	ENSJJAG00000003130	ENSJJAG00000010549 #28	Kctd19 (ENSJJAG00000010989) #29	Lrrc36 (ENSJJAG00000020090) #30	Tppp3 (ENSJJAG00000013386) #32	Zdhhc1 (ENSJJAG00000000584) #33	ENSJJAG00000023733	Hsd11b2 (ENSJJAG00000019696) #34	ENSJJAG00000013926	Atp6v0d1 (ENSJJAG00000019377) #35
Lagomorpha	ANCESTRAL SPECIES	19				ENSGT00940000164375.c	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132.j #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Pika	MODERN SPECIES	3466			ENSOPRG00000014884 #11	ENSOPRG00000014908 #11	ENSOPRG00000014933 #11	CES3 (ENSOPRG00000014976) #12	ENSOPRG00000018431 #13	CBFB (ENSOPRG00000015006) #14	PHAF1 (ENSOPRG00000015015) #15	TRADD (ENSOPRG00000015048) #17	FBXL8 (ENSOPRG00000015068)	HSF4 (ENSOPRG00000015074) #18	ENSOPRG00000015114 #19	MATCAP1 (ENSOPRG00000015125) #20	EXOC3L1 (ENSOPRG00000015144) #21	E2F4 (ENSOPRG00000015165) #22	ELMO3 (ENSOPRG00000015186) #23
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	14	ENSOCUG00000023452	PAG1 (ENSOCUG00000014767)	FABP5 (ENSOCUG00000010425)	ENSOCUG00000007445	FABP12 (ENSOCUG00000013189)	SNX16 (ENSOCUG00000023666)	ENSOCUG00000035758	IMPA1 (ENSOCUG00000014535)	CHMP4C (ENSOCUG00000006847)	ENSOCUG00000023213	RALYL (ENSOCUG00000025694)	ENSOCUG00000032856	ENSOCUG00000024529	ENSOCUG00000026096	LRRCC1 (ENSOCUG00000014653)	ENSOCUG00000031215 #22	ENSOCUG00000012890	ENSOCUG00000024948	CA13 (ENSOCUG00000007328)	ENSOCUG00000005039	ENSOCUG00000035812	CA3 (ENSOCUG00000011736)	CA2 (ENSOCUG00000011742)	ATP6V0D2 (ENSOCUG00000010247) ##35	PSKH2 (ENSOCUG00000003992)	ENSOCUG00000026370	SLC7A13 (ENSOCUG00000017971)	WWP1 (ENSOCUG00000001081)	RMDN1 (ENSOCUG00000001086)	CPNE3 (ENSOCUG00000017961)	CNGB3 (ENSOCUG00000017962)
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	16	ENSOCUG00000025273 #11	ENSOCUG00000025241 #11	ENSOCUG00000024128 #11	ENSOCUG00000017453 #11	ENSOCUG00000034887 #11	CES3 (ENSOCUG00000005152) #12	CES4A (ENSOCUG00000005162) #13	ENSOCUG00000033074 #14	PHAF1 (ENSOCUG00000005173) #15	TRADD (ENSOCUG00000025249) #17	FBXL8 (ENSOCUG00000009996)	HSF4 (ENSOCUG00000010001) #18	ENSOCUG00000010013 #19	MATCAP1 (ENSOCUG00000025033) #20	EXOC3L1 (ENSOCUG00000010019) #21	ENSOCUG00000010022 #22	ELMO3 (ENSOCUG00000010030) #23	ENSOCUG00000010035 #24	TMEM208 (ENSOCUG00000026215) #25	FHOD1 (ENSOCUG00000010039) #26	SLC9A5 (ENSOCUG00000010053) #27	PLEKHG4 (ENSOCUG00000010061) #28	KCTD19 (ENSOCUG00000010077) #29	LRRC36 (ENSOCUG00000010080) #30	ENSOCUG00000038328 #32	ZDHHC1 (ENSOCUG00000011825) #33	HSD11B2 (ENSOCUG00000011843) #34	ATP6V0D1 (ENSOCUG00000011850) #35	AGRP (ENSOCUG00000011856) #36	RIPOR1 (ENSOCUG00000008968) #37	CTCF (ENSOCUG00000008983)
Rabbit	MODERN SPECIES	1338																ENSOCUG00000024747 #22
Atlantogenata	ANCESTRAL SPECIES	24	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Xenarthra	ANCESTRAL SPECIES	31	ENSGT00550000074901	ENSGT00940000159757	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000162243 #16	ENSGT00940000153528.a.b.a.a #15	ENSGT00390000002016 #17	ENSGT00940000158063 #18	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35
Armadillo	MODERN SPECIES	1766	NAE1 (ENSDNOG00000019167)	CA7 (ENSDNOG00000019175)	PDP2 (ENSDNOG00000001626) #7	CDH16 (ENSDNOG00000040290) #8	RRAD (ENSDNOG00000004763) #9	CIAO2B (ENSDNOG00000019604) #10	CES2 (ENSDNOG00000036173) #11	CES3 (ENSDNOG00000016221) #12	CBFB (ENSDNOG00000045626) #14	B3GNT9 (ENSDNOG00000036814) #16	PHAF1 (ENSDNOG00000032949) #15	TRADD (ENSDNOG00000043193) #17	HSF4 (ENSDNOG00000032363) #18	MATCAP1 (ENSDNOG00000038114) #20	EXOC3L1 (ENSDNOG00000033619) #21	E2F4 (ENSDNOG00000041139) #22	ELMO3 (ENSDNOG00000002885) #23	ENSDNOG00000044213 #24	TMEM208 (ENSDNOG00000044413) #25	FHOD1 (ENSDNOG00000019344) #26	SLC9A5 (ENSDNOG00000002725) #27	PLEKHG4 (ENSDNOG00000000367) #28	KCTD19 (ENSDNOG00000012061) #29	ENSDNOG00000036562	LRRC36 (ENSDNOG00000012543) #30	TPPP3 (ENSDNOG00000018201) #32	ZDHHC1 (ENSDNOG00000031670) #33	HSD11B2 (ENSDNOG00000011831) #34	ATP6V0D1 (ENSDNOG00000045091) #35
Afrotheria	ANCESTRAL SPECIES	48	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	7974														MATCAP1 (ENSETEG00000001966) #20	EXOC3L1 (ENSETEG00000001967) #21	ENSETEG00000001969 #22	ENSETEG00000001971 #26
Tenrec	MODERN SPECIES	19132																ENSETEG00000016048 #22
Afrotheria_a	ANCESTRAL SPECIES	47	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000153793 #11	ENSGT00940000155200 #12	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212 #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a #35	ENSGT00940000154258.b #36	ENSGT00940000153717.b #37	ENSGT00940000156672
Elephant	MODERN SPECIES	419	PDP2 (ENSLAFG00000001832) #7	CDH16 (ENSLAFG00000001834) #8	RRAD (ENSLAFG00000001836) #9	CIAO2B (ENSLAFG00000025861) #10	CES2 (ENSLAFG00000007540) #11	CES3 (ENSLAFG00000001736) #12	ENSLAFG00000005502 #14	PHAF1 (ENSLAFG00000006284) #15	B3GNT9 (ENSLAFG00000027277) #16	TRADD (ENSLAFG00000006288) #17	FBXL8 (ENSLAFG00000022599)	HSF4 (ENSLAFG00000021984) #18	ENSLAFG00000025992 #19	MATCAP1 (ENSLAFG00000027287) #20	EXOC3L1 (ENSLAFG00000032050) #21	E2F4 (ENSLAFG00000026216) #22	ELMO3 (ENSLAFG00000006304) #23	ENSLAFG00000006309 #24	TMEM208 (ENSLAFG00000021815) #25	FHOD1 (ENSLAFG00000004623) #26	SLC9A5 (ENSLAFG00000010117) #27	ENSLAFG00000004633 #28	KCTD19 (ENSLAFG00000004638) #29	LRRC36 (ENSLAFG00000004644) #30	TPPP3 (ENSLAFG00000009485) #32	ZDHHC1 (ENSLAFG00000004648) #33	HSD11B2 (ENSLAFG00000008952) #34	ATP6V0D1 (ENSLAFG00000008957) #35	AGRP (ENSLAFG00000016061) #36	RIPOR1 (ENSLAFG00000030162) #37	CTCF (ENSLAFG00000007101)
Hyrax	MODERN SPECIES	5087								CBFB (ENSPCAG00000012845) #14	PHAF1 (ENSPCAG00000012878) #15	TRADD (ENSPCAG00000012975) #17	FBXL8 (ENSPCAG00000013001)	HSF4 (ENSPCAG00000013012) #18	ENSPCAG00000013098 #19	MATCAP1 (ENSPCAG00000013111) #20	EXOC3L1 (ENSPCAG00000013144) #21	E2F4 (ENSPCAG00000013266) #22	ELMO3 (ENSPCAG00000013300) #23	ENSPCAG00000013427 #24	TMEM208 (ENSPCAG00000013471) #25	FHOD1 (ENSPCAG00000013507) #26	SLC9A5 (ENSPCAG00000013649) #27
Marsupialia	ANCESTRAL SPECIES	17	ENSGT00940000160687 #7	ENSGT00940000161650 #8	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000155200 #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212.ib #26	ENSGT00940000159190 #27	ENSGT00940000158845 #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a.q #35	ENSGT00940000154258.b #36	ENSGT00940000163363	ENSGT00940000153717.b #37
Opossum	MODERN SPECIES		PDP2 (ENSMODG00000006788) #7	CDH16 (ENSMODG00000006775) #8	CIAO2B (ENSMODG00000006732) #10	CES2.1 (ENSMODG00000006625) #12	ENSMODG00000048451 #11	ENSMODG00000006385 #12	CES4A (ENSMODG00000006366) #13	CBFB (ENSMODG00000006352) #14	PHAF1 (ENSMODG00000006324) #15	B3GNT9 (ENSMODG00000023085) #16	TRADD (ENSMODG00000006242) #17	HSF4 (ENSMODG00000006228) #18	ENSMODG00000006210 #19	MATCAP1 (ENSMODG00000006203) #20	EXOC3L1 (ENSMODG00000006186) #21	E2F4 (ENSMODG00000006150) #22	ELMO3 (ENSMODG00000006128) #23	ENSMODG00000006063 #24	TMEM208 (ENSMODG00000006058) #25	FHOD1 (ENSMODG00000006046) #26	SLC9A5 (ENSMODG00000006020) #27	ENSMODG00000005997 #28	KCTD19 (ENSMODG00000005972) #29	LRRC36 (ENSMODG00000005963) #30	TPPP3 (ENSMODG00000005950) #32	ZDHHC1 (ENSMODG00000005943) #33	ENSMODG00000005918 #35	AGRP (ENSMODG00000005903) #36	ENSMODG00000045811	ENSMODG00000005860	ENSMODG00000041452
Marsupialia_b	ANCESTRAL SPECIES	19	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000155200.g.b #12	ENSGT00940000155200.g.a #12	ENSGT00940000155200.h #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212.ib #26	ENSGT00940000159190 #27	ENSGT00940000158845.o #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a.q #35	ENSGT00940000154258.b #36	ENSGT00940000163363	ENSGT00940000153717.b #37
Diprotodontia	ANCESTRAL SPECIES	13	ENSGT00940000159836 #9	ENSGT00390000017697.b #10	ENSGT00940000155200.g.b #12	ENSGT00940000155200.g.a #12	ENSGT00940000155200.h #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212.ib #26	ENSGT00940000159190 #27	ENSGT00940000158845.o #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a.q #35	ENSGT00940000154258.b #36	ENSGT00940000163363	ENSGT00940000153717.b #37
Diprotodontia_a	ANCESTRAL SPECIES	14	ENSGT00390000017697.b #10	ENSGT00940000155200.g.a.b.a #12	ENSGT00940000155200.g.b #12	ENSGT00940000155200.g.a.a #12	ENSGT00940000155200.h #12	ENSGT00940000162924 #13	ENSGT00390000018132 #14	ENSGT00940000153528.a.b.a.a #15	ENSGT00940000162243 #16	ENSGT00390000002016 #17	ENSGT00420000029943	ENSGT00940000158063 #18	ENSGT00510000049353 #19	ENSGT00390000004417.b #20	ENSGT01030000234613.a.b #21	ENSGT00940000156252 #22	ENSGT00940000159455 #23	ENSGT00940000160637 #24	ENSGT00390000008139 #25	ENSGT00940000160212.ib #26	ENSGT00940000159190 #27	ENSGT00940000158845.o.a #28	ENSGT00390000007606 #29	ENSGT00530000063884.b #30	ENSGT00940000153875.d.b #32	ENSGT00940000159191 #33	ENSGT00940000159716 #34	ENSGT00390000002200.a.a.q #35	ENSGT00940000154258.b #36	ENSGT00940000163363	ENSGT00940000153717.b #37
Common wonbat	MODERN SPECIES	312				ENSVURG00010021749 #12	ENSVURG00010021716 #12	CES4A (ENSVURG00010021710) #13	CBFB (ENSVURG00010021706) #14	PHAF1 (ENSVURG00010021697) #15	B3GNT9 (ENSVURG00010021694) #16	TRADD (ENSVURG00010021691) #17	ENSVURG00010021684	ENSVURG00010021678 #18	ENSVURG00010021674 #18	ENSVURG00010021668 #19	EXOC3L1 (ENSVURG00010021660) #21	E2F4 (ENSVURG00010021654) #22	ELMO3 (ENSVURG00010021648) #23	ENSVURG00010021642 #24	TMEM208 (ENSVURG00010021633) #25	FHOD1 (ENSVURG00010021625) #26	SLC9A5 (ENSVURG00010021611) #27	ENSVURG00010021593 #28	KCTD19 (ENSVURG00010021585) #29	LRRC36 (ENSVURG00010021578) #30	TPPP3 (ENSVURG00010021572) #32	ZDHHC1 (ENSVURG00010021560) #33	HSD11B2 (ENSVURG00010021554) #34	ATP6V0D1 (ENSVURG00010021547) #35	AGRP (ENSVURG00010021542) #36	ENSVURG00010021537	ENSVURG00010021530
koala	MODERN SPECIES	34	ENSPCIG00000017521 #12	ENSPCIG00000036489 #12	ENSPCIG00000037319 #12	ENSPCIG00000015988 #12	ENSPCIG00000017523 #12	ENSPCIG00000017525 #13	CBFB (ENSPCIG00000017526) #14	PHAF1 (ENSPCIG00000017527) #15	B3GNT9 (ENSPCIG00000017528) #16	TRADD (ENSPCIG00000017529) #17	FBXL8 (ENSPCIG00000017530)	ENSPCIG00000017531 #18	ENSPCIG00000017532 #19	MATCAP1 (ENSPCIG00000034173) #20	EXOC3L1 (ENSPCIG00000017535) #21	E2F4 (ENSPCIG00000017536) #22	ELMO3 (ENSPCIG00000017537) #23	ENSPCIG00000017538 #24	TMEM208 (ENSPCIG00000017539) #25	ENSPCIG00000017540 #26	ENSPCIG00000036240 #26	SLC9A5 (ENSPCIG00000017541) #27	ENSPCIG00000033012 #28	ENSPCIG00000017542 #28	KCTD19 (ENSPCIG00000017543) #29	LRRC36 (ENSPCIG00000017545) #30	TPPP3 (ENSPCIG00000017546) #32	ZDHHC1 (ENSPCIG00000017547) #33	HSD11B2 (ENSPCIG00000032213) #34	ATP6V0D1 (ENSPCIG00000031553) #35	ENSPCIG00000000375
Wallaby	MODERN SPECIES	11693																E2F4 (ENSMEUG00000012534) #22	ELMO3 (ENSMEUG00000012507) #23	ENSMEUG00000012494 #24
Tasmanian devil	MODERN SPECIES	1	RRAD (ENSSHAG00000027207) #9	CIAO2B (ENSSHAG00000021172) #10	ENSSHAG00000007562 #12	ENSSHAG00000006251 #12	ENSSHAG00000007978 #12	ENSSHAG00000022801 #12	CES3 (ENSSHAG00000030468) #12	ENSSHAG00000009427 #13	ENSSHAG00000026641 #14	B3GNT9 (ENSSHAG00000023665) #16	PHAF1 (ENSSHAG00000027333) #15	ENSSHAG00000010769 #18	ENSSHAG00000010997 #19	MATCAP1 (ENSSHAG00000026018) #20	EXOC3L1 (ENSSHAG00000011228) #21	E2F4 (ENSSHAG00000011293) #22	ELMO3 (ENSSHAG00000011361) #23	ENSSHAG00000011429 #24	TMEM208 (ENSSHAG00000029035) #25	SLC9A5 (ENSSHAG00000011867) #27	ENSSHAG00000012075 #28	KCTD19 (ENSSHAG00000012115) #29	LRRC36 (ENSSHAG00000012364) #30	ZDHHC1 (ENSSHAG00000012709) #33	HSD11B2 (ENSSHAG00000029535) #34	ENSSHAG00000021333 #35	ENSSHAG00000013664 #36	ENSSHAG00000014097	RIPOR1 (ENSSHAG00000001542) #37	CTCF (ENSSHAG00000023860)	CARMIL2 (ENSSHAG00000004365)
Platypus	MODERN SPECIES	84	ENSOANG00000002703	ENSOANG00000042529	ENSOANG00000013673	RAB43 (ENSOANG00000006323)	ENSOANG00000019866 #12	CES4A (ENSOANG00000005376) #13	ENSOANG00000014469 #14	PHAF1 (ENSOANG00000001684) #15	B3GNT9 (ENSOANG00000001683) #16	TRADD (ENSOANG00000043400) #17	ENSOANG00000048022	ENSOANG00000002419 #18	ENSOANG00000038691 #19	MATCAP1 (ENSOANG00000000799) #20	ENSOANG00000045487 #21	ENSOANG00000045368 #22	ELMO3 (ENSOANG00000015197) #23	ENSOANG00000015196 #24	TMEM208 (ENSOANG00000036828) #25	FHOD1 (ENSOANG00000015194) #26	ENSOANG00000036976 #28	ENSOANG00000020405 #29	HSD11B2 (ENSOANG00000009417) #34	ATP6V0D1 (ENSOANG00000041210) #35	ENSOANG00000003541 #36	ENSOANG00000003542	RIPOR1 (ENSOANG00000009323) #37	CTCF (ENSOANG00000041591)	CARMIL2 (ENSOANG00000000267)	ENSOANG00000051017	PARD6A (ENSOANG00000004480)