Rodentia_A ANCESTRAL SPECIES 7 ENSGT00940000160328 #7 ENSGT00950000183041.C #8 ENSGT00950000182772.B.a.a #9 ENSGT00940000155679 #10 ENSGT00550000074949 #11 ENSGT00390000010283 #12 ENSGT00390000012355.A.a #13 ENSGT00530000063681.b.a #14 ENSGT00940000154290.b #15 ENSGT00950000182767.a.b.b #16 ENSGT01030000234623.a.b.a #17 ENSGT00940000155227 #18 ENSGT00950000182919.B.b #19 ENSGT00940000159696 #20 ENSGT00940000156640 #21 ENSGT00940000156354 #22 ENSGT00510000046704.b.a #23 ENSGT00390000003122.c.a #24 ENSGT00390000003122.c.b #25 ENSGT00940000158176 #26 ENSGT00940000158270 #27 ENSGT00990000203589.b.b #28 ENSGT00940000157310 #29 ENSGT00940000157603 #30 ENSGT00390000009710 #31 ENSGT00940000159952 ENSGT00390000017026.c #32 ENSGT00940000157817 #33 ENSGT00940000164103 #34 ENSGT00730000111121 #35 ENSGT00390000001362 Sciuridae ANCESTRAL SPECIES 18 ENSGT00940000160328 #7 ENSGT00950000183041.C #8 ENSGT00950000182772.B.a.a #9 ENSGT00940000155679 #10 ENSGT00550000074949.f #11 ENSGT00390000010283 #12 ENSGT00390000012355.A.a #13 ENSGT00530000063681.b.a #14 ENSGT00940000154290.b #15 ENSGT00950000182767.a.b.b #16 ENSGT01030000234623.a.b.a #17 ENSGT00940000155227 #18 ENSGT00950000182919.B.b #19 ENSGT00940000159696 #20 ENSGT00940000156640 #21 ENSGT00940000156354 #22 ENSGT00510000046704.b.a #23 ENSGT00390000003122.c.a #24 ENSGT00390000003122.c.b #25 ENSGT00940000158176 #26 ENSGT00940000158270 #27 ENSGT00990000203589.b.b #28 ENSGT00940000157310 #29 ENSGT00940000157603 #30 ENSGT00390000009710 #31 ENSGT00940000159952 ENSGT00390000017026.c #32 ENSGT00940000157817 #33 ENSGT00940000164103 #34 ENSGT00730000111121 #35 ENSGT00940000163369 #36 Marmotini ANCESTRAL SPECIES 23 ENSGT00940000160328 #7 ENSGT00950000183041.C #8 ENSGT00950000182772.B.a.a #9 ENSGT00940000155679 #10 ENSGT00550000074949.f #11 ENSGT00390000010283 #12 ENSGT00390000012355.A.a #13 ENSGT00530000063681.b.a #14 ENSGT00940000154290.b #15 ENSGT00950000182767.a.b.b #16 ENSGT01030000234623.a.b.a #17 ENSGT00940000155227 #18 ENSGT00950000182919.B.b #19 ENSGT00940000159696 #20 ENSGT00940000156640 #21 ENSGT00940000156354 #22 ENSGT00510000046704.b.a #23 ENSGT00390000003122.c.a #24 ENSGT00390000003122.c.b #25 ENSGT00940000158176 #26 ENSGT00940000158270 #27 ENSGT00990000203589.b.b #28 ENSGT00940000157310 #29 ENSGT00940000157603 #30 ENSGT00390000009710 #31 ENSGT00940000159952 ENSGT00390000017026.c #32 ENSGT00940000157817 #33 ENSGT00940000164103 #34 ENSGT00730000111121 #35 ENSGT00940000163369 #36 Alpin marmot MODERN SPECIES 48 ACOT12 (ENSMMMG00000007863) #7 ZCCHC9 (ENSMMMG00000007846) #8 CKMT2 (ENSMMMG00000007828) #9 ENSMMMG00000007796 #10 MSH3 (ENSMMMG00000007726) #11 ENSMMMG00000007718 #12 ANKRD34B (ENSMMMG00000007710) #13 FAM151B (ENSMMMG00000007697) #14 ENSMMMG00000007367 #15 ENSMMMG00000007362 #16 SERINC5 (ENSMMMG00000007357) #17 THBS4 (ENSMMMG00000007323) #18 MTX3 (ENSMMMG00000007317) #19 CMYA5 (ENSMMMG00000007285) #20 TENT2 (ENSMMMG00000007231) #21 HOMER1 (ENSMMMG00000006979) #22 JMY (ENSMMMG00000006956) #23 BHMT (ENSMMMG00000006936) #24 BHMT2 (ENSMMMG00000006929) #25 DMGDH (ENSMMMG00000006902) #26 ARSB (ENSMMMG00000006892) #27 LHFPL2 (ENSMMMG00000006878) #28 SCAMP1 (ENSMMMG00000006853) #29 AP3B1 (ENSMMMG00000003600) #30 TBCA (ENSMMMG00000003516) #31 WDR41 (ENSMMMG00000003481) #32 PDE8B (ENSMMMG00000003165) #33 ZBED3 (ENSMMMG00000003120) #34 AGGF1 (ENSMMMG00000003093) #35 ENSMMMG00000003082 #36 ENSMMMG00000003037 #37 Marmotini_b ANCESTRAL SPECIES 92 ENSGT00960000189962 ENSGT00940000154290.b #15 ENSGT00950000182767.a.b.b #16 ENSGT01030000234623.a.b.a #17 ENSGT00940000155227 #18 ENSGT00950000182919.B.b #19 ENSGT00940000159696 #20 ENSGT00940000156640 #21 ENSGT00940000156354 #22 ENSGT00510000046704.b.a #23 ENSGT00390000003122.c.a #24 ENSGT00390000003122.c.b #25 ENSGT00940000158176 #26 ENSGT00940000158270 #27 ENSGT00990000203589.b.b #28 ENSGT00940000157310 #29 ENSGT00940000157603 #30 ENSGT00390000009710 #31 ENSGT00940000159952 ENSGT00390000017026.c #32 ENSGT00940000157817 #33 ENSGT00940000164103 #34 ENSGT00730000111121 #35 ENSGT00940000163369 #36 Arctic ground squirrel MODERN SPECIES 118 HOMER1 (ENSUPAG00010013346) #22 JMY (ENSUPAG00010013443) #23 ENSUPAG00010013477 BHMT (ENSUPAG00010013490) #24 BHMT2 (ENSUPAG00010013504) #25 DMGDH (ENSUPAG00010013523) #26 ARSB (ENSUPAG00010013552) #27 LHFPL2 (ENSUPAG00010013572) #28 SCAMP1 (ENSUPAG00010013586) #29 AP3B1 (ENSUPAG00010013612) #30 TBCA (ENSUPAG00010013662) #31 OTP (ENSUPAG00010013666) WDR41 (ENSUPAG00010013668) #32 PDE8B (ENSUPAG00010013724) #33 ZBED3 (ENSUPAG00010014432) #34 AGGF1 (ENSUPAG00010014439) #35 Squirrel MODERN SPECIES 149 ENSSTOG00000025704 #15 SERINC5 (ENSSTOG00000009098) #17 THBS4 (ENSSTOG00000009080) #18 MTX3 (ENSSTOG00000023002) #19 TENT2 (ENSSTOG00000027293) #21 HOMER1 (ENSSTOG00000003164) #22 JMY (ENSSTOG00000021490) #23 BHMT (ENSSTOG00000005887) #24 BHMT2 (ENSSTOG00000005871) #25 DMGDH (ENSSTOG00000005837) #26 ARSB (ENSSTOG00000005818) #27 LHFPL2 (ENSSTOG00000004457) #28 SCAMP1 (ENSSTOG00000023531) #29 AP3B1 (ENSSTOG00000014099) #30 TBCA (ENSSTOG00000009840) #31 OTP (ENSSTOG00000007544) WDR41 (ENSSTOG00000028633) #32 PDE8B (ENSSTOG00000001468) #33 ZBED3 (ENSSTOG00000003989) #34 AGGF1 (ENSSTOG00000021590) #35 ENSSTOG00000023234 #36 Eurasian red squirrel MODERN SPECIES 15 ZCCHC9 (ENSSVLG00005010577) #8 CKMT2 (ENSSVLG00005010620) #9 RASGRF2 (ENSSVLG00005010807) #10 MSH3 (ENSSVLG00005010940) #11 ENSSVLG00005011452 #12 ANKRD34B (ENSSVLG00005011548) #13 ENSSVLG00005011570 FAM151B (ENSSVLG00005011621) #14 ENSSVLG00005011673 #15 ENSSVLG00005011728 #16 SERINC5 (ENSSVLG00005011745) #17 THBS4 (ENSSVLG00005011815) #18 MTX3 (ENSSVLG00005012299) #19 CMYA5 (ENSSVLG00005012391) #20 TENT2 (ENSSVLG00005012556) #21 HOMER1 (ENSSVLG00005012639) #22 ENSSVLG00005013053 JMY (ENSSVLG00005013142) #23 BHMT (ENSSVLG00005013463) #24 ENSSVLG00005013529 BHMT2 (ENSSVLG00005013681) #25 DMGDH (ENSSVLG00005013801) #26 ARSB (ENSSVLG00005013953) #27 LHFPL2 (ENSSVLG00005014202) #28 SCAMP1 (ENSSVLG00005014260) #29 AP3B1 (ENSSVLG00005014385) #30 TBCA (ENSSVLG00005014739) #31 OTP (ENSSVLG00005014921) WDR41 (ENSSVLG00005014989) #32 PDE8B (ENSSVLG00005004357) #33 ENSSVLG00005004554 Hystricomorpha ANCESTRAL SPECIES 31 ENSGT00940000155227 #18 ENSGT00950000182919.B.b #19 ENSGT00940000159696 #20 ENSGT00940000156640 #21 ENSGT00940000156354 #22 ENSGT00510000046704.b.a #23 ENSGT00390000003122.c.a #24 ENSGT00390000003122.c.b #25 ENSGT00940000158176 #26 ENSGT00940000158270 #27 ENSGT00990000203589.b.b #28 ENSGT00940000157310 #29 ENSGT00940000157603 #30 ENSGT00390000009710 #31 ENSGT00940000159952 ENSGT00390000017026.c #32 ENSGT00940000157817 #33 ENSGT00730000111121 #35 ENSGT00390000001362 ENSGT00940000161125 Hystricomorpha_a ANCESTRAL SPECIES 72 ENSGT00940000155227 #18 ENSGT00950000182919.B.b #19 ENSGT00940000159696 #20 ENSGT00940000156640 #21 ENSGT00940000156354 #22 ENSGT00510000046704.b.a #23 ENSGT00390000003122.c.a #24 ENSGT00390000003122.c.b #25 ENSGT00940000158176 #26 ENSGT00940000158270 #27 ENSGT00990000203589.b.b #28 ENSGT00940000157310 #29 ENSGT00940000157603 #30 ENSGT00390000009710 #31 ENSGT00940000159952 ENSGT00390000017026.c #32 ENSGT00940000157817 #33 ENSGT00730000111121 #35 ENSGT00390000001362 ENSGT00940000161125 Guinea pig MODERN SPECIES 83 UBXN2B (ENSCPOG00000023569) CYP7A1 (ENSCPOG00000003388) SDCBP (ENSCPOG00000013616) NSMAF (ENSCPOG00000013618) TOX (ENSCPOG00000010812) CA8 (ENSCPOG00000025176) RAB2A (ENSCPOG00000035393) CHD7 (ENSCPOG00000013385) CLVS1 (ENSCPOG00000007342) ASPH (ENSCPOG00000007346) PARP4 (ENSCPOG00000014672) THBS4 (ENSCPOG00000004926) #18 MTX3 (ENSCPOG00000024084) #19 CMYA5 (ENSCPOG00000036038) #20 TENT2 (ENSCPOG00000005462) #21 HOMER1 (ENSCPOG00000007454) #22 JMY (ENSCPOG00000008290) #23 BHMT (ENSCPOG00000039971) #24 BHMT2 (ENSCPOG00000004265) #25 DMGDH (ENSCPOG00000001913) #26 ARSB (ENSCPOG00000040291) #27 LHFPL2 (ENSCPOG00000035182) #28 SCAMP1 (ENSCPOG00000038700) #29 AP3B1 (ENSCPOG00000000479) #30 TBCA (ENSCPOG00000035914) #31 OTP (ENSCPOG00000009888) WDR41 (ENSCPOG00000001183) #32 PDE8B (ENSCPOG00000001181) #33 AGGF1 (ENSCPOG00000003545) #35 Hystricomorpha_b ANCESTRAL SPECIES 95 ENSGT00940000155227 #18 ENSGT00950000182919.B.b #19 ENSGT00940000159696 #20 ENSGT00940000156640 #21 ENSGT00940000156354 #22 ENSGT00510000046704.b.a #23 ENSGT00390000003122.c.a #24 ENSGT00390000003122.c.b #25 ENSGT00940000158176 #26 ENSGT00940000158270 #27 ENSGT00990000203589.b.b #28 ENSGT00940000157310 #29 ENSGT00940000157603 #30 ENSGT00390000009710 #31 ENSGT00940000159952 ENSGT00390000017026.c #32 ENSGT00940000157817 #33 ENSGT00730000111121 #35 ENSGT00390000001362 ENSGT00940000161125 Degu MODERN SPECIES 279 THBS4 (ENSODEG00000004087) #18 ENSODEG00000004025 MTX3 (ENSODEG00000004002) #19 TENT2 (ENSODEG00000003946) #21 HOMER1 (ENSODEG00000003750) #22 ENSODEG00000003653 JMY (ENSODEG00000003622) #23 BHMT (ENSODEG00000003547) #24 BHMT2 (ENSODEG00000003503) #25 DMGDH (ENSODEG00000003394) #26 ARSB (ENSODEG00000003302) #27 ENSODEG00000003273 LHFPL2 (ENSODEG00000003251) #28 SCAMP1 (ENSODEG00000001895) #29 ENSODEG00000001866 ENSODEG00000001855 AP3B1 (ENSODEG00000001757) #30 ENSODEG00000001711 ENSODEG00000018773 ENSODEG00000018710 Long-tailed chinchilla MODERN SPECIES 132 DNAJC12 (ENSCLAG00000012847) SIRT1 (ENSCLAG00000015502) HERC4 (ENSCLAG00000016138) MYPN (ENSCLAG00000011004) ENSCLAG00000014026 PBLD (ENSCLAG00000010284) HNRNPH3 (ENSCLAG00000010680) RUFY2 (ENSCLAG00000012405) DNA2 (ENSCLAG00000012086) SLC25A16 (ENSCLAG00000015512) CCAR1 (ENSCLAG00000011807) THBS4 (ENSCLAG00000009452) #18 MTX3 (ENSCLAG00000011076) #19 CMYA5 (ENSCLAG00000009334) #20 TENT2 (ENSCLAG00000010023) #21 HOMER1 (ENSCLAG00000010571) #22 JMY (ENSCLAG00000009333) #23 BHMT (ENSCLAG00000010253) #24 BHMT2 (ENSCLAG00000013633) #25 DMGDH (ENSCLAG00000014854) #26 ARSB (ENSCLAG00000013316) #27 ENSCLAG00000009820 LHFPL2 (ENSCLAG00000010028) #28 SCAMP1 (ENSCLAG00000010430) #29 ENSCLAG00000017966 AP3B1 (ENSCLAG00000017374) #30 TBCA (ENSCLAG00000011463) #31 OTP (ENSCLAG00000011647) WDR41 (ENSCLAG00000010095) #32 PDE8B (ENSCLAG00000011619) #33 AGGF1 (ENSCLAG00000012928) #35 Naked mole-rat female MODERN SPECIES 7 ENSHGLG00000008417 ENSHGLG00000008456 ENSHGLG00000037791 ENSHGLG00000020952 ENSHGLG00000045248 ENSHGLG00000034451 ENSHGLG00000034932 ENSHGLG00000025275 ENSHGLG00000045404 ENSHGLG00000019982 ENSHGLG00000002153 #18 ENSHGLG00000041734 MTX3 (ENSHGLG00000034356) #19 CMYA5 (ENSHGLG00000011995) #20 TENT2 (ENSHGLG00000008742) #21 HOMER1 (ENSHGLG00000001109) #22 JMY (ENSHGLG00000002781) #23 ENSHGLG00000045617 BHMT (ENSHGLG00000050585) #24 BHMT2 (ENSHGLG00000036952) #25 DMGDH (ENSHGLG00000000837) #26 ARSB (ENSHGLG00000000586) #27 ENSHGLG00000000380 ENSHGLG00000040355 ENSHGLG00000035099 SCAMP1 (ENSHGLG00000048514) #29 AP3B1 (ENSHGLG00000001480) #30 ENSHGLG00000019786 ENSHGLG00000000425 #31 OTP (ENSHGLG00000003908) ENSHGLG00000017808 #32