Murinae	ANCESTRAL SPECIES	24	ENSGT00940000160328	ENSGT00950000183041.C #7	ENSGT00950000182772.B.a.a #8	ENSGT00940000155679 #9	ENSGT00550000074949 #10	ENSGT00390000010283 #12	ENSGT00390000012355.A.a #13	ENSGT00530000063681.b.a #14	ENSGT00940000154290.b #15	ENSGT00950000182767.a.b.b #16	ENSGT01030000234623.a.b.a #17	ENSGT00940000155227 #18	ENSGT00950000182919.B.b #19	ENSGT00940000159696 #20	ENSGT00940000156640 #21	ENSGT00940000156354 #22	ENSGT00510000046704.b.a #23	ENSGT00390000003122.c.a #24	ENSGT00390000003122.c.b #25	ENSGT00940000158176 #26	ENSGT00940000158270 #27	ENSGT00990000203589.b.b #28	ENSGT00940000157310 #29	ENSGT00940000157603 #30	ENSGT00390000009710 #31	ENSGT00940000159952 #32	ENSGT00390000017026.c ##33	ENSGT00940000157817 #34	ENSGT00940000164103 #35	ENSGT00730000111121 #36	ENSGT00390000001362 #37
Mus	ANCESTRAL SPECIES	22	ENSGT00940000160328	ENSGT00950000183041.C #7	ENSGT00950000182772.B.a.a #8	ENSGT00940000155679 #9	ENSGT00550000074949 #10	ENSGT00390000010283 #12	ENSGT00390000012355.A.a #13	ENSGT00530000063681.b.a #14	ENSGT00940000154290.b #15	ENSGT00950000182767.a.b.b #16	ENSGT01030000234623.a.b.a #17	ENSGT00940000155227 #18	ENSGT00950000182919.B.b #19	ENSGT00940000159696 #20	ENSGT00940000156640 #21	ENSGT00940000156354 #22	ENSGT00510000046704.b.a #23	ENSGT00390000003122.c.a #24	ENSGT00390000003122.c.b #25	ENSGT00940000158176 #26	ENSGT00940000158270 #27	ENSGT00990000203589.b.b #28	ENSGT00940000157310 #29	ENSGT00900000143364	ENSGT00940000157603 #30	ENSGT00390000009710 #31	ENSGT00940000159952 #32	ENSGT00390000017026.c ##33	ENSGT00940000157817 #34	ENSGT00940000164103 #35	ENSGT00730000111121 #36
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000160328	ENSGT00950000183041.C #7	ENSGT00950000182772.B.a.a #8	ENSGT00940000155679 #9	ENSGT00550000074949 #10	ENSGT00390000010283 #12	ENSGT00390000012355.A.a #13	ENSGT00530000063681.b.a #14	ENSGT00940000154290.b #15	ENSGT00950000182767.a.b.b #16	ENSGT01030000234623.a.b.a #17	ENSGT00940000155227 #18	ENSGT00950000182919.B.b #19	ENSGT00940000159696 #20	ENSGT00940000156640 #21	ENSGT00940000156354 #22	ENSGT00510000046704.b.a #23	ENSGT00390000003122.c.a #24	ENSGT00390000003122.c.b #25	ENSGT00940000158176 #26	ENSGT00940000158270 #27	ENSGT00990000203589.b.b #28	ENSGT00940000157310 #29	ENSGT00900000143364	ENSGT00940000157603 #30	ENSGT00390000009710 #31	ENSGT00940000159952 #32	ENSGT00390000017026.c ##33	ENSGT00940000157817 #34	ENSGT00940000164103 #35	ENSGT00730000111121 #36
Mus_B	ANCESTRAL SPECIES	13	ENSGT00940000160328	ENSGT00950000183041.C #7	ENSGT00950000182772.B.a.a #8	ENSGT00940000155679 #9	ENSGT00550000074949 #10	ENSGT00390000010283 #12	ENSGT00390000012355.A.a #13	ENSGT00530000063681.b.a #14	ENSGT00940000154290.b #15	ENSGT00950000182767.a.b.b #16	ENSGT01030000234623.a.b.a #17	ENSGT00940000155227 #18	ENSGT00950000182919.B.b #19	ENSGT00940000159696 #20	ENSGT00940000156640 #21	ENSGT00940000156354 #22	ENSGT00510000046704.b.a #23	ENSGT00390000003122.c.a #24	ENSGT00390000003122.c.b #25	ENSGT00940000158176 #26	ENSGT00940000158270 #27	ENSGT00990000203589.b.b #28	ENSGT00940000157310 #29	ENSGT00900000143364	ENSGT00940000157603 #30	ENSGT00390000009710 #31	ENSGT00940000159952 #32	ENSGT00390000017026.c ##33	ENSGT00940000157817 #34	ENSGT00940000164103 #35	ENSGT00730000111121 #36
Mouse	MODERN SPECIES	4	Zcchc9 (ENSMUSG00000021621) #7	Ckmt2 (ENSMUSG00000021622) #8	Rasgrf2 (ENSMUSG00000021708) #9	Msh3 (ENSMUSG00000014850) #10	Gm20379 (ENSMUSG00000100622) #11	Dhfr (ENSMUSG00000021707) #12	Ankrd34b (ENSMUSG00000045034) #13	Fam151b (ENSMUSG00000034334) #14	Zfyve16 (ENSMUSG00000021706) #15	Spz1 (ENSMUSG00000046957) #16	Serinc5 (ENSMUSG00000021703) #17	Thbs4 (ENSMUSG00000021702) #18	Mtx3 (ENSMUSG00000021704) #19	Cmya5 (ENSMUSG00000047419) #20	Tent2 (ENSMUSG00000042167) #21	Homer1 (ENSMUSG00000007617) #22	Jmy (ENSMUSG00000021690) #23	Bhmt (ENSMUSG00000074768) #24	Bhmt2 (ENSMUSG00000042118) #25	Dmgdh (ENSMUSG00000042102) #26	Arsb (ENSMUSG00000042082) #27	Lhfpl2 (ENSMUSG00000045312) #28	Scamp1 (ENSMUSG00000021687) #29	Ap3b1 (ENSMUSG00000021686) #30	Tbca (ENSMUSG00000042043) #31	Otp (ENSMUSG00000021685) #32	Wdr41 (ENSMUSG00000042015) #33	Pde8b (ENSMUSG00000021684) #34	Zbed3 (ENSMUSG00000041995) #35	Aggf1 (ENSMUSG00000021681) #36	Crhbp (ENSMUSG00000021680) #37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00940000160328	ENSGT00950000183041.C #7	ENSGT00950000182772.B.a.a #8	ENSGT00940000155679 #9	ENSGT00550000074949 #10	ENSGT00390000010283 #12	ENSGT00390000012355.A.a #13	ENSGT00530000063681.b.a #14	ENSGT00940000154290.b #15	ENSGT00950000182767.a.b.b #16	ENSGT01030000234623.a.b.a #17	ENSGT00940000155227 #18	ENSGT00950000182919.B.b #19	ENSGT00940000159696 #20	ENSGT00940000156640 #21	ENSGT00940000156354 #22	ENSGT00510000046704.b.a #23	ENSGT00390000003122.c.a.a #24	ENSGT00390000003122.c.b #25	ENSGT00940000158176 #26	ENSGT00940000158270 #27	ENSGT00990000203589.b.b #28	ENSGT00940000157310 #29	ENSGT00900000143364	ENSGT00940000157603 #30	ENSGT00390000009710 #31	ENSGT00940000159952 #32	ENSGT00390000017026.c ##33	ENSGT00940000157817 #34	ENSGT00940000164103 #35	ENSGT00730000111121 #36
spretus	MODERN SPECIES	4	Zcchc9 (MGP_SPRETEiJ_G0019648) #7	Ckmt2 (MGP_SPRETEiJ_G0019649) #8	Rasgrf2 (MGP_SPRETEiJ_G0019650) #9	Msh3 (MGP_SPRETEiJ_G0019651) #10	MGP_SPRETEiJ_G0019652 ##11	Dhfr (MGP_SPRETEiJ_G0019653) #12	Ankrd34b (MGP_SPRETEiJ_G0019654) #13	Fam151b (MGP_SPRETEiJ_G0019655) #14	Zfyve16 (MGP_SPRETEiJ_G0019656) #15	Spz1 (MGP_SPRETEiJ_G0019657) #16	Serinc5 (MGP_SPRETEiJ_G0019658) #17	Thbs4 (MGP_SPRETEiJ_G0019659) #18	Mtx3 (MGP_SPRETEiJ_G0019660) #19	Cmya5 (MGP_SPRETEiJ_G0019661) #20	Tent2 (MGP_SPRETEiJ_G0019662) #21	Homer1 (MGP_SPRETEiJ_G0019663) #22	Jmy (MGP_SPRETEiJ_G0019664) #23	MGP_SPRETEiJ_G0019665 #24	Bhmt2 (MGP_SPRETEiJ_G0019666) #25	Dmgdh (MGP_SPRETEiJ_G0019667) #26	Arsb (MGP_SPRETEiJ_G0019668) #27	Lhfpl2 (MGP_SPRETEiJ_G0019669) #28	Scamp1 (MGP_SPRETEiJ_G0019670) #29	MGP_SPRETEiJ_G0019671	Ap3b1 (MGP_SPRETEiJ_G0019672) #30	Tbca (MGP_SPRETEiJ_G0019673) #31	Otp (MGP_SPRETEiJ_G0019674) #32	MGP_SPRETEiJ_G0019675 ##33	Pde8b (MGP_SPRETEiJ_G0019676) #34	Zbed3 (MGP_SPRETEiJ_G0019677) #35	Aggf1 (MGP_SPRETEiJ_G0019678) #36
Steppe mouse	MODERN SPECIES	3412					Msh3 (ENSMSIG00000012586) #10	Dhfr (ENSMSIG00000012568) #12	Ankrd34b (ENSMSIG00000012559) #13	ENSMSIG00000012548 #14	Zfyve16 (ENSMSIG00000012506) #15	Spz1 (ENSMSIG00000012499) #16	Serinc5 (ENSMSIG00000012451) #17	Thbs4 (ENSMSIG00000012423) #18	Mtx3 (ENSMSIG00000012405) #19	Cmya5 (ENSMSIG00000012218) #20	Tent2 (ENSMSIG00000012117) #21	Homer1 (ENSMSIG00000011873) #22	ENSMSIG00000011865	ENSMSIG00000011858	ENSMSIG00000011824	Jmy (ENSMSIG00000011806) #23	ENSMSIG00000011793	Bhmt2 (ENSMSIG00000011736) #25	Dmgdh (ENSMSIG00000011670) #26	Arsb (ENSMSIG00000011652) #27	Lhfpl2 (ENSMSIG00000011618) #28	Scamp1 (ENSMSIG00000011596) #29	Ap3b1 (ENSMSIG00000011521) #30	ENSMSIG00000011491 #31	Otp (ENSMSIG00000011481) #32	ENSMSIG00000011421 ##33	Pde8b (ENSMSIG00000011209) #34
Ryukyu mouse	MODERN SPECIES	4	Acot12 (MGP_CAROLIEiJ_G0018763)	Zcchc9 (MGP_CAROLIEiJ_G0018764) #7	Ckmt2 (MGP_CAROLIEiJ_G0018765) #8	Rasgrf2 (MGP_CAROLIEiJ_G0018766) #9	Msh3 (MGP_CAROLIEiJ_G0018767) #10	Dhfr (MGP_CAROLIEiJ_G0018768) #12	Ankrd34b (MGP_CAROLIEiJ_G0018769) #13	Fam151b (MGP_CAROLIEiJ_G0018770) #14	Zfyve16 (MGP_CAROLIEiJ_G0018771) #15	Spz1 (MGP_CAROLIEiJ_G0018772) #16	Serinc5 (MGP_CAROLIEiJ_G0018773) #17	Thbs4 (MGP_CAROLIEiJ_G0018774) #18	Mtx3 (MGP_CAROLIEiJ_G0018775) #19	MGP_CAROLIEiJ_G0018776 #20	Tent2 (MGP_CAROLIEiJ_G0018777) #21	Homer1 (MGP_CAROLIEiJ_G0018778) #22	Jmy (MGP_CAROLIEiJ_G0018779) #23	MGP_CAROLIEiJ_G0018780 #24	Bhmt2 (MGP_CAROLIEiJ_G0018781) #25	Dmgdh (MGP_CAROLIEiJ_G0018782) #26	MGP_CAROLIEiJ_G0018783	Arsb (MGP_CAROLIEiJ_G0018784) #27	MGP_CAROLIEiJ_G0018785	Lhfpl2 (MGP_CAROLIEiJ_G0018786) #28	Scamp1 (MGP_CAROLIEiJ_G0018787) #29	MGP_CAROLIEiJ_G0018788	Ap3b1 (MGP_CAROLIEiJ_G0018789) #30	Tbca (MGP_CAROLIEiJ_G0018790) #31	Otp (MGP_CAROLIEiJ_G0018791) #32	MGP_CAROLIEiJ_G0018792 ##33	Pde8b (MGP_CAROLIEiJ_G0018793) #34
Shrew mouse	MODERN SPECIES	2	Acot12 (MGP_PahariEiJ_G0015842)	Zcchc9 (MGP_PahariEiJ_G0015843) #7	Ckmt2 (MGP_PahariEiJ_G0015844) #8	Rasgrf2 (MGP_PahariEiJ_G0015845) #9	Msh3 (MGP_PahariEiJ_G0015846) #10	Dhfr (MGP_PahariEiJ_G0015847) #12	Ankrd34b (MGP_PahariEiJ_G0015848) #13	Fam151b (MGP_PahariEiJ_G0015849) #14	Zfyve16 (MGP_PahariEiJ_G0015850) #15	Spz1 (MGP_PahariEiJ_G0015851) #16	Serinc5 (MGP_PahariEiJ_G0015852) #17	Thbs4 (MGP_PahariEiJ_G0015853) #18	Mtx3 (MGP_PahariEiJ_G0015854) #19	Cmya5 (MGP_PahariEiJ_G0015855) #20	Tent2 (MGP_PahariEiJ_G0015856) #21	Homer1 (MGP_PahariEiJ_G0015857) #22	Jmy (MGP_PahariEiJ_G0015858) #23	MGP_PahariEiJ_G0015859 #24	MGP_PahariEiJ_G0015860 ##25	Dmgdh (MGP_PahariEiJ_G0015861) #26	Arsb (MGP_PahariEiJ_G0015862) #27	Lhfpl2 (MGP_PahariEiJ_G0015863) #28	Scamp1 (MGP_PahariEiJ_G0015864) #29	MGP_PahariEiJ_G0015865	Ap3b1 (MGP_PahariEiJ_G0015866) #30	Tbca (MGP_PahariEiJ_G0015867) #31	Otp (MGP_PahariEiJ_G0015868) #32	MGP_PahariEiJ_G0015869 ##33	Pde8b (MGP_PahariEiJ_G0015870) #34	Zbed3 (MGP_PahariEiJ_G0015871) #35	Aggf1 (MGP_PahariEiJ_G0015872) #36
Rat	MODERN SPECIES	11	Zcchc9 (ENSRNOG00000051682) #7	Ckmt2 (ENSRNOG00000055450) #8	Rasgrf2 (ENSRNOG00000056151) #9	ENSRNOG00000064838	ENSRNOG00000069130	Dhfr (ENSRNOG00000013521) #12	Ankrd34b (ENSRNOG00000040166) #13	Fam151b (ENSRNOG00000024136) #14	Zfyve16 (ENSRNOG00000013055) #15	Spz1 (ENSRNOG00000013050) #16	Serinc5 (ENSRNOG00000024039) #17	Thbs4 (ENSRNOG00000012471) #18	Mtx3 (ENSRNOG00000023837) #19	Cmya5 (ENSRNOG00000023803) #20	Tent2 (ENSRNOG00000012099) #21	Homer1 (ENSRNOG00000047014) #22	Jmy (ENSRNOG00000050343) #23	Bhmt (ENSRNOG00000011200) #24	AABR07007675.2 (ENSRNOG00000058886)	LOC103691423 (ENSRNOG00000029988)	Bhmt2 (ENSRNOG00000040120) #25	Dmgdh (ENSRNOG00000023588) #26	Arsb (ENSRNOG00000011150) #27	Lhfpl2 (ENSRNOG00000011032) #28	Scamp1 (ENSRNOG00000061582) #29	Ap3b1 (ENSRNOG00000010624) #30	ENSRNOG00000068970	Tbca (ENSRNOG00000048342) #31	Otp (ENSRNOG00000010560) #32	Wdr41 (ENSRNOG00000025462) ##33	Pde8b (ENSRNOG00000010280) #34