Cyprinoidei	ANCESTRAL SPECIES	44	ENSGT00940000159456 #7	ENSGT00940000155076.a.d #8	ENSGT00390000010899.a.a #9	ENSGT01030000234573.B.c.a #10	ENSGT00940000158683.a.a.a.a #11	ENSGT00940000164671 #12	ENSGT00940000157459.b #13	ENSGT00940000156793 #14	ENSGT00390000016216 #15	ENSGT00940000154677.b.a #16	ENSGT00940000156484.b.e.a.a #17	ENSGT00940000178910 #18	ENSGT00940000153739.a.b.t #19	ENSGT00520000055578.a.b #20	ENSGT00940000153897.b.a.b #21	ENSGT00940000155459.x.b #22	ENSGT01030000234527.A.a.a.b.a #23	ENSGT00490000043329.a.b.g.a #24	ENSGT00940000155724.q #25	ENSGT00940000156078.c #26	ENSGT00530000063503.a.b.g.b #27	ENSGT01010000222287.B.b.a.b.b.b #28	ENSGT00940000159468 #29	ENSGT00940000164359.b #30	ENSGT00940000154030.a.b #31	ENSGT00390000013670 #32	ENSGT00940000157701 #33	ENSGT00940000155734 #34	ENSGT00940000167539 #35	ENSGT00940000155699.a.a #36	ENSGT00940000155443.d #37
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	200												ENSGT00940000178910 #18	ENSGT00940000153739.a.b.t.d #19	ENSGT00520000055578.a.b.b #20	ENSGT00940000153897.b.a.b.b #21	ENSGT00940000155459.x.b.a #22	ENSGT01030000234527.A.a.a.b.a.a #23	ENSGT00490000043329.a.b.g.a.a #24	ENSGT00940000155724.q #25	ENSGT00940000156078.c.a.a #26	ENSGT00530000063503.a.b.g.b.a #27	ENSGT01010000222287.B.b.a.b.b.b.d #28	ENSGT00940000159468.c #29	ENSGT00940000164359.b #30	ENSGT00940000161652.b.b.b.a.a	ENSGT00390000013670.i #32	ENSGT00940000157701.f.b.a #33	ENSGT00940000155443.c.a ##37	ENSGT00390000008069.b	ENSGT00390000003990.q.b	ENSGT00940000155623.l
Cyprininae_a	ANCESTRAL SPECIES	186												ENSGT00940000178910 #18	ENSGT00940000153739.a.b.t.d #19	ENSGT00520000055578.a.b.b #20	ENSGT00940000153897.b.a.b.b #21	ENSGT00940000155459.x.b.a #22	ENSGT01030000234527.A.a.a.b.a.a #23	ENSGT00490000043329.a.b.g.a.a #24	ENSGT00940000155724.q #25	ENSGT00940000156078.c.a.a #26	ENSGT00940000156078.c.b #26	ENSGT00530000063503.a.b.g.b.a #27	ENSGT01010000222287.B.b.a.b.b.b.d #28	ENSGT00940000159468.c #29	ENSGT00940000164359.b #30	ENSGT00940000161652.b.b.b.a.a	ENSGT00390000013670.i #32	ENSGT00940000157701.f.b.a #33	ENSGT00940000155443.c.a ##37	ENSGT00390000008069.a	ENSGT00390000003990.q.a
Golden-line barbel	MODERN SPECIES	188	plekhh1 (ENSSGRG00000035927) #7	tmem229b (ENSSGRG00000035924) #9	MTA1 (ENSSGRG00000034959) #10	crip2 (ENSSGRG00000034941) #11	crip1 (ENSSGRG00000034938) #12	ENSSGRG00000034928 #13	ptgr2 (ENSSGRG00000034756) #14	TMEM62 (ENSSGRG00000034754) #15	hadhab (ENSSGRG00000034752) #16	slc30a1b (ENSSGRG00000034750) #17	ENSSGRG00000034749 #18	kif3cb (ENSSGRG00000034748) #19	kif3cb (ENSSGRG00000034747) #19	ASXL2 (ENSSGRG00000034746) #20	dtnbb (ENSSGRG00000034708) #21	dnmt3ab (ENSSGRG00000034588) #22	dpysl5a (ENSSGRG00000034222) #23	mapre3a (ENSSGRG00000034213) #24	myo6b (ENSSGRG00000031310) #26	ENSSGRG00000031282 #27	HTR1B (ENSSGRG00000031281) #28	colec11 (ENSSGRG00000031280) #29	sox11a (ENSSGRG00000031279)
Common carp reference	MODERN SPECIES	30	pax9 (ENSCCRG00000077508)	slc25a21 (ENSCCRG00000074104)	plekhh1 (ENSCCRG00000037878) #7	zfp36l1a (ENSCCRG00000074380) #8	tmem229b (ENSCCRG00000060078) #9	ENSCCRG00000038349 #10	crip2 (ENSCCRG00000081724) #11	ENSCCRG00000026314 ##11	ENSCCRG00000082359 #13	ptgr2 (ENSCCRG00000068954) #14	ENSCCRG00000026698 #15	hadhab (ENSCCRG00000018116) #16	kif3cb (ENSCCRG00000080522) #19	ENSCCRG00000026832 #20	dtnbb (ENSCCRG00000076932) #21	dnmt3ab (ENSCCRG00000026851) #22	dpysl5a (ENSCCRG00000026992) #23	mapre3a (ENSCCRG00000065137) #24	ENSCCRG00000027719 #25	myo6b (ENSCCRG00000027793) #26	HTR1B (ENSCCRG00000041042) #28	ENSCCRG00000016524 #27	colec11 (ENSCCRG00000082687) #29	ENSCCRG00000053134 #30	ENSCCRG00000057630	sox11a (ENSCCRG00000064618)	ENSCCRG00000077898	ENSCCRG00000058522	rsad2 (ENSCCRG00000002099) #32	rnf144aa (ENSCCRG00000069223) #33	adam17a (ENSCCRG00000060377) ##37
Goldfish	MODERN SPECIES	8	plekhh1 (ENSCARG00000062727) #7	zfp36l1a (ENSCARG00000062720) #8	tmem229b (ENSCARG00000062716) #9	MTA1 (ENSCARG00000060844) #10	crip2 (ENSCARG00000060777) #11	crip1 (ENSCARG00000060728) #12	ENSCARG00000060693 #13	ptgr2 (ENSCARG00000060665) #14	TMEM62 (ENSCARG00000060601) #15	hadhab (ENSCARG00000056328) #16	slc30a1b (ENSCARG00000056146) #17	ENSCARG00000056126 #18	kif3cb (ENSCARG00000056090) #19	ENSCARG00000055965 #20	dtnbb (ENSCARG00000053334) #21	dnmt3ab (ENSCARG00000050968) #22	dpysl5a (ENSCARG00000050873) #23	mapre3a (ENSCARG00000050854) #24	ENSCARG00000050835 #25	myo6b (ENSCARG00000050475) #26	ENSCARG00000050407 #27	HTR1B (ENSCARG00000050392) #28	colec11 (ENSCARG00000050371) #29	ENSCARG00000050358 #30	ENSCARG00000050341 #31	rnf144aa (ENSCARG00000050309) #33	adam17a (ENSCARG00000037592) ##37	iah1 (ENSCARG00000037431)	itgb1bp1 (ENSCARG00000037420)	rsad2 (ENSCARG00000037380) #32	asap2a (ENSCARG00000037172)
Cyprininae	ANCESTRAL SPECIES	132	ENSGT00730000111119.e.a	ENSGT00940000159456.a #7	ENSGT00940000155076.a.d.b #8	ENSGT00390000010899.a.a.f #9	ENSGT01030000234573.B.c.a.t #10	ENSGT00940000158683.a.a.a.a.f #11	ENSGT00940000164671 #12	ENSGT00940000157459.b.b #13	ENSGT00940000156793 #14	ENSGT00390000016216.b #15	ENSGT00940000154677.b.a.c #16	ENSGT00940000156484.b.e.a.a #17	ENSGT00940000153739.a.b.t.c #19	ENSGT00520000055578.a.b.a #20	ENSGT00940000153897.b.a.b.a #21	ENSGT00940000155459.x.b.b #22	ENSGT01030000234527.A.a.a.b.a.b #23	ENSGT00490000043329.a.b.g.a.b #24
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	36	rtkn2 (ENSCARG00000047333)	ZNF365 (ENSCARG00000047483)	adob (ENSCARG00000047487)	EGR2 (ENSCARG00000047499)	JMJD1C (ENSCARG00000047520)	ENSCARG00000048079	ahsa1b (ENSCARG00000048119)	amy2al1 (ENSCARG00000048185)	ktn1 (ENSCARG00000048295)	peli2 (ENSCARG00000048530)	otx2b (ENSCARG00000048561)	exoc5 (ENSCARG00000048736)	ap5m1 (ENSCARG00000050940)	naa30 (ENSCARG00000050959)	SLC35F4 (ENSCARG00000050975)	dnmt3ab (ENSCARG00000051027) #22	ENSCARG00000051417 #23	ENSCARG00000051432	ENSCARG00000051505 #13	ENSCARG00000051663	CMPK2 (ENSCARG00000051670) #31	rsad2 (ENSCARG00000051680) #32	rnf144aa (ENSCARG00000051709) #33	adam17a (ENSCARG00000051817) ##37	iah1 (ENSCARG00000052601)	asap2a (ENSCARG00000052690)	ENSCARG00000053212	MBOAT2 (ENSCARG00000053242)	KIDINS220 (ENSCARG00000054188)	id2a (ENSCARG00000054514)	ENSCARG00000054525
Goldfish	MODERN SPECIES	2492																dnmt3ab (ENSCARG00000065516) #22
Cyprininae_a	ANCESTRAL SPECIES	74	ENSGT00940000155076.a.d.b #8	ENSGT00390000010899.a.a.f #9	ENSGT01030000234573.B.c.a.t #10	ENSGT00940000158683.a.a.a.a.f #11	ENSGT00940000158683.a.b.b ##11	ENSGT00940000158683.a.a.a.a.e.a.b #11	ENSGT00940000164671 #12	ENSGT00940000157459.b.b #13	ENSGT00940000156793.m #14	ENSGT00390000016216.b #15	ENSGT00940000154677.b.a.c #16	ENSGT00940000156484.b.e.a.a.a #17	ENSGT00940000153739.a.b.t.c #19	ENSGT00520000055578.a.b.a #20	ENSGT00940000153897.b.a.b.a #21	ENSGT00940000155459.x.b.b #22	ENSGT01030000234527.A.a.a.b.a.b #23	ENSGT00490000043329.a.b.g.a.b #24	ENSGT00530000063503.a.b.g.b.b #27	ENSGT01010000222287.B.b.a.b.b.b.c #28	ENSGT00940000159468.d #29	ENSGT00940000154030.a.b.b #31	ENSGT00390000013670.j #32	ENSGT00940000154030.a.b.a #31	ENSGT00940000157701.f.b.b #33	ENSGT00940000155443.c.b ##37	ENSGT00390000003990.r	ENSGT00940000155623.k	ENSGT00940000163467.b.a.b.d.a.a.b	ENSGT01030000234564.a.a.a.a.b.a.p	ENSGT00940000156714.a.a
Common carp reference	MODERN SPECIES	4	tmem229b (ENSCCRG00000066937) #9	ENSCCRG00000021347 #10	crip2 (ENSCCRG00000048564) #11	ENSCCRG00000062562	ENSCCRG00000024868	ENSCCRG00000070712 #13	ptgr2 (ENSCCRG00000067372) #14	ENSCCRG00000014613 #15	hadhab (ENSCCRG00000078184) #16	slc30a1b (ENSCCRG00000074185) #17	kif3cb (ENSCCRG00000079903) #19	ENSCCRG00000018140 #20	ENSCCRG00000063534	ENSCCRG00000076338	dtnbb (ENSCCRG00000029912) #21	dnmt3ab (ENSCCRG00000008419) #22	dpysl5a (ENSCCRG00000058101) #23	mapre3a (ENSCCRG00000026813) #24	myo6b (ENSCCRG00000028622) #26	ENSCCRG00000078826	ENSCCRG00000063432 #27	HTR1B (ENSCCRG00000049481) #28	colec11 (ENSCCRG00000041025) #29	sox11a (ENSCCRG00000060391)	ENSCCRG00000068064	CMPK2 (ENSCCRG00000055315) #31	rsad2 (ENSCCRG00000001864) #32	rnf144aa (ENSCCRG00000012999) #33	adam17a (ENSCCRG00000002200) ##37	iah1 (ENSCCRG00000013979)	itgb1bp1 (ENSCCRG00000013986)
Golden-line barbel	MODERN SPECIES	292	slc25a21 (ENSSGRG00000002255)	plekhh1 (ENSSGRG00000002262) #7	zfp36l1a (ENSSGRG00000002264) #8	MTA1 (ENSSGRG00000002266) #10	crip2 (ENSSGRG00000002353) #11	crip1 (ENSSGRG00000002361) #12	ENSSGRG00000002410 #13	ptgr2 (ENSSGRG00000002415) #14	TMEM62 (ENSSGRG00000002418) #15	hadhab (ENSSGRG00000002835) #16	slc30a1b (ENSSGRG00000006515) #17	ENSSGRG00000006516 #19	ENSSGRG00000006517	ASXL2 (ENSSGRG00000006518) #20	dtnbb (ENSSGRG00000006519) #21	dnmt3ab (ENSSGRG00000006603) #22	dpysl5a (ENSSGRG00000008679) #23	ENSSGRG00000008696 ##24	mapre3a (ENSSGRG00000008697) #24	ENSSGRG00000008713	HTR1B (ENSSGRG00000011024) #28	colec11 (ENSSGRG00000011028) #29	ENSSGRG00000011050 #30	sox11a (ENSSGRG00000011051)
Zebrafish	MODERN SPECIES	8	zfp36l1a (ENSDARG00000016154) #8	tmem229b (ENSDARG00000060569) #9	MTA1 (ENSDARG00000007198) #10	crip2 (ENSDARG00000070670) #11	crip1 (ENSDARG00000053858) #12	ENSDARG00000096902	ENSDARG00000053864 #13	ptgr2 (ENSDARG00000070673) #14	TMEM62 (ENSDARG00000053890) #15	ENSDARG00000117189	hadhab (ENSDARG00000060594) #16	slc30a1b (ENSDARG00000053896) #17	kif3cb (ENSDARG00000079500) #19	ASXL2 (ENSDARG00000076501) #20	dtnbb (ENSDARG00000013020) #21	dnmt3ab (ENSDARG00000015566) #22	ENSDARG00000109649	dpysl5a (ENSDARG00000011141) #23	mapre3a (ENSDARG00000020231) #24	ENSDARG00000079992 #25	myo6b (ENSDARG00000042141) #26	ENSDARG00000074839 #27	htr1b (ENSDARG00000053987)	colec11 (ENSDARG00000013266) #29	ENSDARG00000103264 #30	sox11a (ENSDARG00000077811)	ENSDARG00000111789	CMPK2 (ENSDARG00000031359) #31	rsad2 (ENSDARG00000004952) #32	rnf144aa (ENSDARG00000020600) #33	adam17a (ENSDARG00000043213) ##37