Mus	ANCESTRAL SPECIES	5	ENSGT00530000063873.A #7	ENSGT00940000156552 #8	ENSGT00940000156089 #9	ENSGT00500000044939 #10	ENSGT00940000155041 #11	ENSGT00390000013916 #12	ENSGT00930000150950.b #13	ENSGT00390000005530.a.a #14	ENSGT00950000183046.a.a #15	ENSGT00940000156449 #16	ENSGT00940000153534.A #17	ENSGT00940000154319.v #18	ENSGT00860000133854 #19	ENSGT00940000158239.b #20	ENSGT00940000159606 #21	ENSGT00940000155861.C #22	ENSGT00940000156444 #23	ENSGT00390000005159 #24	ENSGT00390000018209 #25	ENSGT00940000155390 #26	ENSGT00940000158202 #27	ENSGT00940000160319 #28	ENSGT00530000064199 #29	ENSGT00390000010316.k #31	ENSGT00390000011295.a #32	ENSGT00390000015228 #33	ENSGT00390000003590 #34	ENSGT00940000153189.B #35	ENSGT00940000159722 #36	ENSGT00390000012561.b #37	ENSGT00950000183114.a.b.b.f.a.b
Mus_A	ANCESTRAL SPECIES	5	ENSGT00530000063873.A #7	ENSGT00940000156552 #8	ENSGT00940000156089 #9	ENSGT00500000044939 #10	ENSGT00940000155041 #11	ENSGT00390000013916 #12	ENSGT00930000150950.b #13	ENSGT00390000005530.a.a #14	ENSGT00950000183046.a.a #15	ENSGT00940000156449 #16	ENSGT00940000153534.A #17	ENSGT00940000154319.v #18	ENSGT00860000133854 #19	ENSGT00940000158239.b #20	ENSGT00940000159606 #21	ENSGT00940000155861.C #22	ENSGT00940000156444 #23	ENSGT00390000005159 #24	ENSGT00390000018209 #25	ENSGT00940000155390 #26	ENSGT00940000158202 #27	ENSGT00940000160319 #28	ENSGT00530000064199 #29	ENSGT00390000010316.k #31	ENSGT00390000011295.a #32	ENSGT00390000015228 #33	ENSGT00390000003590 #34	ENSGT00940000153189.B #35	ENSGT00940000159722 #36	ENSGT00390000012561.b #37	ENSGT00950000183114.a.b.b.f.a.b
Mus_B	ANCESTRAL SPECIES	7	ENSGT00530000063873.A #7	ENSGT00940000156552 #8	ENSGT00940000156089.l ##9	ENSGT00500000044939 #10	ENSGT00940000155041 #11	ENSGT00390000013916 #12	ENSGT00930000150950.b #13	ENSGT00390000005530.a.a #14	ENSGT00950000183046.a.a #15	ENSGT00940000156449 #16	ENSGT00940000153534.A #17	ENSGT00940000154319.v #18	ENSGT00860000133854 #19	ENSGT00940000158239.b #20	ENSGT00940000159606 #21	ENSGT00940000155861.C #22	ENSGT00940000156444 #23	ENSGT00390000005159 #24	ENSGT00390000018209 #25	ENSGT00940000155390 #26	ENSGT00940000158202 #27	ENSGT00940000160319 #28	ENSGT00530000064199 #29	ENSGT00390000010316.k #31	ENSGT00390000011295.a #32	ENSGT00390000015228 #33	ENSGT00390000003590 #34	ENSGT00940000153189.B #35	ENSGT00940000159722 #36	ENSGT00390000012561.b.p ##37	ENSGT00950000183114.a.b.b.f.a.b
Mouse	MODERN SPECIES		Cd28 (ENSMUSG00000026012) #7	Raph1 (ENSMUSG00000026014) #8	Abi2 (ENSMUSG00000026782) #9	Cyp20a1 (ENSMUSG00000049439) #10	Nbeal1 (ENSMUSG00000073664) #11	Carf (ENSMUSG00000026017) #12	Wdr12 (ENSMUSG00000026019) #13	Ica1l (ENSMUSG00000026018) #14	Fam117b (ENSMUSG00000041040) #15	Bmpr2 (ENSMUSG00000067336) #16	Nop58 (ENSMUSG00000026020) #17	Sumo1 (ENSMUSG00000026021) #18	Gm973 (ENSMUSG00000047361) #19	Fzd7 (ENSMUSG00000041075) #20	Cdk15 (ENSMUSG00000026023) #21	Als2 (ENSMUSG00000026024) #22	Mpp4 (ENSMUSG00000079550) #23	Tmem237 (ENSMUSG00000038079) #24	C2cd6 (ENSMUSG00000072295) #25	Stradb (ENSMUSG00000026027) #26	Trak2 (ENSMUSG00000026028) #27	Casp8 (ENSMUSG00000026029) #28	Cflar (ENSMUSG00000026031) #29	Flacc1 (ENSMUSG00000047528) #30	Ndufb3 (ENSMUSG00000026032) #31	Hycc2 (ENSMUSG00000038174) #32	Orc2 (ENSMUSG00000026037) #33	Nif3l1 (ENSMUSG00000026036) #34	Ppil3 (ENSMUSG00000026035) #35	Clk1 (ENSMUSG00000026034) #36	Bzw1 (ENSMUSG00000051223) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00530000063873.A #7	ENSGT00940000156552 #8	ENSGT00940000156089.l ##9	ENSGT00500000044939 #10	ENSGT00940000155041 #11	ENSGT00390000013916 #12	ENSGT00930000150950.b #13	ENSGT00390000005530.a.a #14	ENSGT00950000183046.a.a #15	ENSGT00940000156449 #16	ENSGT00940000153534.A #17	ENSGT00940000154319.v #18	ENSGT00860000133854 #19	ENSGT00940000158239.b #20	ENSGT00940000159606 #21	ENSGT00940000155861.C #22	ENSGT00940000156444 #23	ENSGT00390000005159 #24	ENSGT00390000018209 #25	ENSGT00940000155390 #26	ENSGT00940000158202 #27	ENSGT00940000160319 #28	ENSGT00530000064199 #29	ENSGT00390000010316.k #31	ENSGT00390000011295.a #32	ENSGT00390000015228 #33	ENSGT00390000003590 #34	ENSGT00940000153189.B #35	ENSGT00940000159722 #36	ENSGT00390000012561.b.p ##37	ENSGT00950000183114.a.b.b.f.a.b
Steppe mouse	MODERN SPECIES	44	Raph1 (ENSMSIG00000010756) #8	ENSMSIG00000010702 ##9	Cyp20a1 (ENSMSIG00000010618) #10	Nbeal1 (ENSMSIG00000010304) #11	ENSMSIG00000010287	Carf (ENSMSIG00000010210) #12	Wdr12 (ENSMSIG00000010103) #13	Ica1l (ENSMSIG00000010027) #14	Fam117b (ENSMSIG00000010018) #15	Bmpr2 (ENSMSIG00000009989) #16	Nop58 (ENSMSIG00000009865) #17	ENSMSIG00000009835 #18	Gm973 (ENSMSIG00000009601) #19	Fzd7 (ENSMSIG00000009593) #20	Cdk15 (ENSMSIG00000009531) #21	Als2 (ENSMSIG00000009450) #22	Mpp4 (ENSMSIG00000008670) #23	Tmem237 (ENSMSIG00000008413) #24	C2cd6 (ENSMSIG00000008310) #25	Stradb (ENSMSIG00000008262) #26	Trak2 (ENSMSIG00000008206) #27
spretus	MODERN SPECIES		Cd28 (MGP_SPRETEiJ_G0014998) #7	Raph1 (MGP_SPRETEiJ_G0014997) #8	Abi2 (MGP_SPRETEiJ_G0014996) ##9	Cyp20a1 (MGP_SPRETEiJ_G0014995) #10	Nbeal1 (MGP_SPRETEiJ_G0014994) #11	Carf (MGP_SPRETEiJ_G0014993) #12	Wdr12 (MGP_SPRETEiJ_G0014992) #13	Ica1l (MGP_SPRETEiJ_G0014991) #14	MGP_SPRETEiJ_G0014990 ##15	Bmpr2 (MGP_SPRETEiJ_G0014989) #16	Nop58 (MGP_SPRETEiJ_G0014988) #17	Sumo1 (MGP_SPRETEiJ_G0014987) #18	Gm973 (MGP_SPRETEiJ_G0014986) #19	Fzd7 (MGP_SPRETEiJ_G0014985) #20	Cdk15 (MGP_SPRETEiJ_G0014984) #21	Als2 (MGP_SPRETEiJ_G0014983) #22	Mpp4 (MGP_SPRETEiJ_G0014982) #23	Tmem237 (MGP_SPRETEiJ_G0014981) #24	MGP_SPRETEiJ_G0014980 #25	Stradb (MGP_SPRETEiJ_G0014979) #26	Trak2 (MGP_SPRETEiJ_G0014978) #27	Casp8 (MGP_SPRETEiJ_G0014976) #28	Cflar (MGP_SPRETEiJ_G0014975) #29	Ndufb3 (MGP_SPRETEiJ_G0014974) #31	Hycc2 (MGP_SPRETEiJ_G0014973) #32	Orc2 (MGP_SPRETEiJ_G0014972) #33	Nif3l1 (MGP_SPRETEiJ_G0014971) #34	Ppil3 (MGP_SPRETEiJ_G0014970) #35	Clk1 (MGP_SPRETEiJ_G0014969) #36	Bzw1 (MGP_SPRETEiJ_G0014968) ##37	Aox2 (MGP_SPRETEiJ_G0014967)
Ryukyu mouse	MODERN SPECIES		Cd28 (MGP_CAROLIEiJ_G0014191) #7	Raph1 (MGP_CAROLIEiJ_G0014190) #8	Abi2 (MGP_CAROLIEiJ_G0014189) #9	Cyp20a1 (MGP_CAROLIEiJ_G0014188) #10	Nbeal1 (MGP_CAROLIEiJ_G0014187) #11	Carf (MGP_CAROLIEiJ_G0014186) #12	MGP_CAROLIEiJ_G0014185	MGP_CAROLIEiJ_G0014184 #14	Fam117b (MGP_CAROLIEiJ_G0014183) #15	Bmpr2 (MGP_CAROLIEiJ_G0014182) #16	Nop58 (MGP_CAROLIEiJ_G0014181) #17	Sumo1 (MGP_CAROLIEiJ_G0014180) #18	Gm973 (MGP_CAROLIEiJ_G0014179) #19	Fzd7 (MGP_CAROLIEiJ_G0014178) #20	Cdk15 (MGP_CAROLIEiJ_G0014177) #21	Als2 (MGP_CAROLIEiJ_G0014176) #22	Mpp4 (MGP_CAROLIEiJ_G0014175) #23	Tmem237 (MGP_CAROLIEiJ_G0014174) #24	MGP_CAROLIEiJ_G0014173 #25	Stradb (MGP_CAROLIEiJ_G0014172) #26	Trak2 (MGP_CAROLIEiJ_G0014171) #27	Casp8 (MGP_CAROLIEiJ_G0014170) #28	Cflar (MGP_CAROLIEiJ_G0014169) #29	Ndufb3 (MGP_CAROLIEiJ_G0014168) #31	Hycc2 (MGP_CAROLIEiJ_G0014167) #32	Orc2 (MGP_CAROLIEiJ_G0014166) #33	Nif3l1 (MGP_CAROLIEiJ_G0014165) #34	Ppil3 (MGP_CAROLIEiJ_G0014164) #35	Clk1 (MGP_CAROLIEiJ_G0014163) #36	Bzw1 (MGP_CAROLIEiJ_G0014162) #37	Aox2 (MGP_CAROLIEiJ_G0014161)
Shrew mouse	MODERN SPECIES	18	Cd28 (MGP_PahariEiJ_G0027429) #7	Raph1 (MGP_PahariEiJ_G0027428) #8	Abi2 (MGP_PahariEiJ_G0027427) #9	Cyp20a1 (MGP_PahariEiJ_G0027426) #10	MGP_PahariEiJ_G0027425 #11	Carf (MGP_PahariEiJ_G0027424) #12	MGP_PahariEiJ_G0027423 #13	MGP_PahariEiJ_G0027422 #14	Fam117b (MGP_PahariEiJ_G0027421) #15	Bmpr2 (MGP_PahariEiJ_G0027420) #16	Nop58 (MGP_PahariEiJ_G0027419) #17	MGP_PahariEiJ_G0027418 #18	Gm973 (MGP_PahariEiJ_G0027417) #19	Fzd7 (MGP_PahariEiJ_G0027416) #20	Cdk15 (MGP_PahariEiJ_G0027415) #21	Als2 (MGP_PahariEiJ_G0027414) #22	Mpp4 (MGP_PahariEiJ_G0027413) #23	Tmem237 (MGP_PahariEiJ_G0027412) #24	MGP_PahariEiJ_G0027411 #25	Stradb (MGP_PahariEiJ_G0027410) #26	Trak2 (MGP_PahariEiJ_G0027409) #27	Casp8 (MGP_PahariEiJ_G0027408) #28	Cflar (MGP_PahariEiJ_G0027407) #29	Ndufb3 (MGP_PahariEiJ_G0027406) #31	Hycc2 (MGP_PahariEiJ_G0027405) #32	Orc2 (MGP_PahariEiJ_G0027404) #33	Nif3l1 (MGP_PahariEiJ_G0027403) #34	Ppil3 (MGP_PahariEiJ_G0027402) #35	Clk1 (MGP_PahariEiJ_G0027401) #36	Bzw1 (MGP_PahariEiJ_G0027400) #37	Aox4 (MGP_PahariEiJ_G0027399)