Glires	ANCESTRAL SPECIES	15	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00960000191040	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00900000143686	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37
Rodentia	ANCESTRAL SPECIES	3	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00960000191040	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00900000143686	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00960000191040	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00940000163627.d.a
Myomorpha	ANCESTRAL SPECIES	13	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00960000191040	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00940000163627.d.a
Muroidea	ANCESTRAL SPECIES	12	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00960000191040	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00940000163627.d.a
Muroidea_A	ANCESTRAL SPECIES		ENSGT00730000111392 #12	ENSGT00960000191040	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00940000163627.d.a
Murinae	ANCESTRAL SPECIES		ENSGT00730000111392 #12	ENSGT00960000191040	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00940000163627.d.a
Mus	ANCESTRAL SPECIES		ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000169314 #33	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37
Shrew mouse	MODERN SPECIES		Klhl25 (MGP_PahariEiJ_G0013088) #7	Akap13 (MGP_PahariEiJ_G0013087) #8	Sv2b (MGP_PahariEiJ_G0013086) #9	Slco3a1 (MGP_PahariEiJ_G0013085) #10	St8sia2 (MGP_PahariEiJ_G0013084) #11	Fam174b (MGP_PahariEiJ_G0013083) #12	Chd2 (MGP_PahariEiJ_G0013082) #13	Rgma (MGP_PahariEiJ_G0013081) #14	Mctp2 (MGP_PahariEiJ_G0013080) #15	Nr2f2 (MGP_PahariEiJ_G0013079) #16	Arrdc4 (MGP_PahariEiJ_G0013078) #17	Igf1r (MGP_PahariEiJ_G0013077) #18	Synm (MGP_PahariEiJ_G0013076) #19	Ttc23 (MGP_PahariEiJ_G0013075) #20	Lrrc28 (MGP_PahariEiJ_G0013074) #21	Mef2a (MGP_PahariEiJ_G0013073) #22	Lysmd4 (MGP_PahariEiJ_G0013072) #23	Adamts17 (MGP_PahariEiJ_G0013071) #24	Cers3 (MGP_PahariEiJ_G0013070) #25	Lins1 (MGP_PahariEiJ_G0013069) #26	Asb7 (MGP_PahariEiJ_G0013068) #27	Aldh1a3 (MGP_PahariEiJ_G0013067) #28	Lrrk1 (MGP_PahariEiJ_G0013066) #29	Chsy1 (MGP_PahariEiJ_G0013065) #30	Selenos (MGP_PahariEiJ_G0013064) #31	Snrpa1 (MGP_PahariEiJ_G0013063) #32	MGP_PahariEiJ_G0013062 #33	Pcsk6 (MGP_PahariEiJ_G0013061) #34	Tm2d3 (MGP_PahariEiJ_G0013060) #35	Tarsl2 (MGP_PahariEiJ_G0013059) #36	Tjp1 (MGP_PahariEiJ_G0013058) #37
Mus_A	ANCESTRAL SPECIES	1	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00860000135967	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000169314 #33	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37
Mus_B	ANCESTRAL SPECIES		ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00860000135967	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000169314 #33	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37
Mouse	MODERN SPECIES	16	Sv2b (ENSMUSG00000053025) #9	Slco3a1 (ENSMUSG00000025790) #10	St8sia2 (ENSMUSG00000025789) #11	Fam174b (ENSMUSG00000078670) #12	Chd2 (ENSMUSG00000078671) #13	Rgma (ENSMUSG00000070509) #14	Mctp2 (ENSMUSG00000032776) #15	Nr2f2 (ENSMUSG00000030551) #16	Arrdc4 (ENSMUSG00000042659) #17	Fam169b (ENSMUSG00000074071)	Pgpep1l (ENSMUSG00000030553)	Igf1r (ENSMUSG00000005533) #18	Synm (ENSMUSG00000030554) #19	Ttc23 (ENSMUSG00000030555) #20	Lrrc28 (ENSMUSG00000030556) #21	Mef2a (ENSMUSG00000030557) #22	Lysmd4 (ENSMUSG00000043831) #23	Adamts17 (ENSMUSG00000058145) #24	Cers3 (ENSMUSG00000030510) #25	Lins1 (ENSMUSG00000053091) #26	Asb7 (ENSMUSG00000030509) #27	Aldh1a3 (ENSMUSG00000015134) #28	Gm10974 (ENSMUSG00000078677)	Lrrk1 (ENSMUSG00000015133) #29	Chsy1 (ENSMUSG00000032640) #30	Selenos (ENSMUSG00000075701) #31	Snrpa1 (ENSMUSG00000030512) #32	Gm45213 (ENSMUSG00000108793)	Pcsk6 (ENSMUSG00000030513) #34	Tm2d3 (ENSMUSG00000078681) #35	Tarsl2 (ENSMUSG00000030515) #36
Mus_C	ANCESTRAL SPECIES	13	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT01030000235343	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00860000135967	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000169314 #33	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37
Steppe mouse	MODERN SPECIES	3350					Mctp2 (ENSMSIG00000005382) #15	ENSMSIG00000005302	Nr2f2 (ENSMSIG00000005262) #16	Arrdc4 (ENSMSIG00000005179) #17	ENSMSIG00000005165	Fam169b (ENSMSIG00000005051)	Pgpep1l (ENSMSIG00000005007)	Igf1r (ENSMSIG00000004944) #18	Synm (ENSMSIG00000004856) #19	Ttc23 (ENSMSIG00000004748) #20	Lrrc28 (ENSMSIG00000004688) #21	Mef2a (ENSMSIG00000004565) #22	Lysmd4 (ENSMSIG00000004542) #23
spretus	MODERN SPECIES	16	Sv2b (MGP_SPRETEiJ_G0030966) #9	Slco3a1 (MGP_SPRETEiJ_G0030965) #10	St8sia2 (MGP_SPRETEiJ_G0030964) #11	Fam174b (MGP_SPRETEiJ_G0030963) #12	Chd2 (MGP_SPRETEiJ_G0030962) #13	Rgma (MGP_SPRETEiJ_G0030961) #14	Mctp2 (MGP_SPRETEiJ_G0030960) #15	MGP_SPRETEiJ_G0030959	Nr2f2 (MGP_SPRETEiJ_G0030958) #16	Arrdc4 (MGP_SPRETEiJ_G0030957) #17	MGP_SPRETEiJ_G0030956	Igf1r (MGP_SPRETEiJ_G0030955) #18	Synm (MGP_SPRETEiJ_G0030954) #19	Ttc23 (MGP_SPRETEiJ_G0030953) #20	Lrrc28 (MGP_SPRETEiJ_G0030952) #21	Mef2a (MGP_SPRETEiJ_G0030951) #22	Lysmd4 (MGP_SPRETEiJ_G0030950) #23	Adamts17 (MGP_SPRETEiJ_G0030949) #24	Cers3 (MGP_SPRETEiJ_G0030948) #25	Lins1 (MGP_SPRETEiJ_G0030947) #26	Asb7 (MGP_SPRETEiJ_G0030946) #27	Aldh1a3 (MGP_SPRETEiJ_G0030945) #28	Lrrk1 (MGP_SPRETEiJ_G0030944) #29	Chsy1 (MGP_SPRETEiJ_G0030943) #30	Selenos (MGP_SPRETEiJ_G0030942) #31	Snrpa1 (MGP_SPRETEiJ_G0030941) #32	MGP_SPRETEiJ_G0030940 #33	Pcsk6 (MGP_SPRETEiJ_G0030939) #34	Tarsl2 (MGP_SPRETEiJ_G0030938) #36	Tm2d3 (MGP_SPRETEiJ_G0030937) #35	Tjp1 (MGP_SPRETEiJ_G0030936) #37
Ryukyu mouse	MODERN SPECIES	16	Slco3a1 (MGP_CAROLIEiJ_G0029863) #10	St8sia2 (MGP_CAROLIEiJ_G0029862) #11	Fam174b (MGP_CAROLIEiJ_G0029861) #12	Chd2 (MGP_CAROLIEiJ_G0029860) #13	Rgma (MGP_CAROLIEiJ_G0029859) #14	Mctp2 (MGP_CAROLIEiJ_G0029858) #15	MGP_CAROLIEiJ_G0029857	Nr2f2 (MGP_CAROLIEiJ_G0029856) #16	Arrdc4 (MGP_CAROLIEiJ_G0029855) #17	MGP_CAROLIEiJ_G0029854	Igf1r (MGP_CAROLIEiJ_G0029853) #18	Synm (MGP_CAROLIEiJ_G0029852) #19	Ttc23 (MGP_CAROLIEiJ_G0029851) #20	MGP_CAROLIEiJ_G0029850	Lrrc28 (MGP_CAROLIEiJ_G0029849) #21	Mef2a (MGP_CAROLIEiJ_G0029848) #22	Lysmd4 (MGP_CAROLIEiJ_G0029847) #23	Adamts17 (MGP_CAROLIEiJ_G0029846) #24	Cers3 (MGP_CAROLIEiJ_G0029845) #25	Lins1 (MGP_CAROLIEiJ_G0029844) #26	Asb7 (MGP_CAROLIEiJ_G0029843) #27	Aldh1a3 (MGP_CAROLIEiJ_G0029842) #28	Lrrk1 (MGP_CAROLIEiJ_G0029841) #29	Chsy1 (MGP_CAROLIEiJ_G0029840) #30	Selenos (MGP_CAROLIEiJ_G0029839) #31	Snrpa1 (MGP_CAROLIEiJ_G0029838) #32	MGP_CAROLIEiJ_G0029837 #33	Pcsk6 (MGP_CAROLIEiJ_G0029836) #34	Tm2d3 (MGP_CAROLIEiJ_G0029835) #35	Tarsl2 (MGP_CAROLIEiJ_G0029834) #36	MGP_CAROLIEiJ_G0029833 #37
Rat	MODERN SPECIES		Fam174b (ENSRNOG00000065271)	Chd2 (ENSRNOG00000012716) #13	Rgma (ENSRNOG00000012874) #14	Mctp2 (ENSRNOG00000009932) #15	Nr2f2 (ENSRNOG00000010308) #16	ENSRNOG00000065206	Arrdc4 (ENSRNOG00000010775) #17	LOC102551255 (ENSRNOG00000049257)	Fam169b (ENSRNOG00000022822)	Pgpep1l (ENSRNOG00000070202)	Igf1r (ENSRNOG00000014187) #18	LOC108349848 (ENSRNOG00000070349)	Synm (ENSRNOG00000014030) #19	Ttc23 (ENSRNOG00000013877) #20	Lrrc28 (ENSRNOG00000023274) #21	Mef2a (ENSRNOG00000047756) #22	Lysmd4 (ENSRNOG00000050624) #23	Adamts17 (ENSRNOG00000037080) #24	Cers3 (ENSRNOG00000013823) #25	Lins1 (ENSRNOG00000042776) #26	Asb7 (ENSRNOG00000013795) #27	Aldh1a3 (ENSRNOG00000052070) #28	Lrrk1 (ENSRNOG00000012730) #29	Chsy1 (ENSRNOG00000012698) #30	Selenos (ENSRNOG00000012576) #31	Snrpa1 (ENSRNOG00000011932) #32	ENSRNOG00000070428	Pcsk6 (ENSRNOG00000011526) #34	AABR07004134.1 (ENSRNOG00000056928)	Tm2d3 (ENSRNOG00000011290) #35	Tars3 (ENSRNOG00000024460) #36
Cricetidae	ANCESTRAL SPECIES	1	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00960000191040	ENSGT00940000155888 #13	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00530000063335.A
Cricetinae	ANCESTRAL SPECIES	15	ENSGT01080000257410.A.f #10	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00860000135967	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000165193	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37
Chinese hamster chok1gshd	MODERN SPECIES	101	Fam174b (ENSCGRG00001018170) #12	Chd2 (ENSCGRG00001006649) #13	Rgma (ENSCGRG00001019932) #14	ENSCGRG00001006608	Mctp2 (ENSCGRG00001021616) #15	ENSCGRG00001008245	Nr2f2 (ENSCGRG00001011537) #16	ENSCGRG00001022756	Arrdc4 (ENSCGRG00001021034) #17	Fam169b (ENSCGRG00001013956)	Pgpep1l (ENSCGRG00001013682)	Igf1r (ENSCGRG00001024468) #18	Synm (ENSCGRG00001009711) #19	Ttc23 (ENSCGRG00001014885) #20	Lrrc28 (ENSCGRG00001005872) #21	Mef2a (ENSCGRG00001010696) #22	Lysmd4 (ENSCGRG00001023024) #23	Adamts17 (ENSCGRG00001015416) #24	Cers3 (ENSCGRG00001019177) #25	Lins1 (ENSCGRG00001016676) #26	Asb7 (ENSCGRG00001013196) #27	Aldh1a3 (ENSCGRG00001010590) #28	ENSCGRG00001008545	Lrrk1 (ENSCGRG00001013893) #29	Chsy1 (ENSCGRG00001021727) #30	Selenos (ENSCGRG00001011589) #31	Snrpa1 (ENSCGRG00001008779) #32	Pcsk6 (ENSCGRG00001018811) #34	ENSCGRG00001008890	Tm2d3 (ENSCGRG00001000383) #35	Tarsl2 (ENSCGRG00001020827) #36
Golden Hamster	MODERN SPECIES	51																ENSMAUG00000014401 #22
Cricetidae_B	ANCESTRAL SPECIES	33	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00960000191040	ENSGT00940000155888 #13	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00530000063335.A
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000027808	Chd2 (ENSPEMG00000019507) #13	Rgma (ENSPEMG00000019300) #14	Mctp2 (ENSPEMG00000013075) #15	ENSPEMG00000025656	ENSPEMG00000012279	ENSPEMG00000000829	Arrdc4 (ENSPEMG00000015729) #17	ENSPEMG00000027311	ENSPEMG00000001646	Pgpep1l (ENSPEMG00000013597)	Igf1r (ENSPEMG00000015935) #18	Synm (ENSPEMG00000012779) #19	Ttc23 (ENSPEMG00000017817) #20	Lrrc28 (ENSPEMG00000003238) #21	Mef2a (ENSPEMG00000031349) #22	ENSPEMG00000000590 #23	Adamts17 (ENSPEMG00000010644) #24	Cers3 (ENSPEMG00000023207) #25	Lins1 (ENSPEMG00000023050) #26	Asb7 (ENSPEMG00000022462) #27	Aldh1a3 (ENSPEMG00000021611) #28	Lrrk1 (ENSPEMG00000019367) #29	Chsy1 (ENSPEMG00000019829) #30	Selenos (ENSPEMG00000019545) #31	ENSPEMG00000019673 #32	Pcsk6 (ENSPEMG00000019946) #34	Tm2d3 (ENSPEMG00000009183) #35	Tarsl2 (ENSPEMG00000019852) #36	Tjp1 (ENSPEMG00000020140) #37	Entrep2 (ENSPEMG00000019895)
Prairie vole	MODERN SPECIES	9	Slco3a1 (ENSMOCG00000017386) #10	St8sia2 (ENSMOCG00000007781) #11	Fam174b (ENSMOCG00000014947) #12	ENSMOCG00000019953	ENSMOCG00000008402	Chd2 (ENSMOCG00000015124) #13	Rgma (ENSMOCG00000020663) #14	Mctp2 (ENSMOCG00000006816) #15	Nr2f2 (ENSMOCG00000017767) #16	Arrdc4 (ENSMOCG00000015443) #17	Fam169b (ENSMOCG00000012543)	Igf1r (ENSMOCG00000001481) #18	Synm (ENSMOCG00000013384) #19	Ttc23 (ENSMOCG00000015902) #20	Lrrc28 (ENSMOCG00000011205) #21	Mef2a (ENSMOCG00000020513) #22	Lysmd4 (ENSMOCG00000012052) #23	Adamts17 (ENSMOCG00000020471) #24	Cers3 (ENSMOCG00000014900) #25	Lins1 (ENSMOCG00000020979) #26	Asb7 (ENSMOCG00000022928) #27	Aldh1a3 (ENSMOCG00000002659) #28	Lrrk1 (ENSMOCG00000004090) #29	ENSMOCG00000022634 #30	Selenos (ENSMOCG00000004767) #31	Snrpa1 (ENSMOCG00000008501) #32	Pcsk6 (ENSMOCG00000003355) #34	Tm2d3 (ENSMOCG00000020623) #35	Tarsl2 (ENSMOCG00000014909) #36	Tjp1 (ENSMOCG00000018692) #37	ENSMOCG00000009123
Upper Galilee mountains blind mole rat	MODERN SPECIES	1493																Mef2a (ENSNGAG00000000879) #22	Lysmd4 (ENSNGAG00000013974) #23	Adamts17 (ENSNGAG00000014108) #24	Cers3 (ENSNGAG00000010966) #25	Lins1 (ENSNGAG00000013666) #26	Asb7 (ENSNGAG00000014776) #27	Aldh1a3 (ENSNGAG00000017800) #28	Lrrk1 (ENSNGAG00000003967) #29	Chsy1 (ENSNGAG00000010613) #30	Selenos (ENSNGAG00000015323) #31	ENSNGAG00000018606 #32	Pcsk6 (ENSNGAG00000019875) #34	Tm2d3 (ENSNGAG00000021108) #35	Tarsl2 (ENSNGAG00000020451) #36	ENSNGAG00000012775	Tjp1 (ENSNGAG00000020850) #37
Lesser Egyptian jerboa	MODERN SPECIES	65	ENSJJAG00000022612 #8	Sv2b (ENSJJAG00000023324) #9	Slco3a1 (ENSJJAG00000014694) #10	St8sia2 (ENSJJAG00000012574) #11	Fam174b (ENSJJAG00000000216) #12	Chd2 (ENSJJAG00000000213) #13	Rgma (ENSJJAG00000021940) #14	Mctp2 (ENSJJAG00000014138) #15	ENSJJAG00000002911	Fam169b (ENSJJAG00000010402)	Pgpep1l (ENSJJAG00000023509)	Igf1r (ENSJJAG00000012323) #18	ENSJJAG00000015758 #19	Ttc23 (ENSJJAG00000024024) #20	Lrrc28 (ENSJJAG00000015208) #21	Mef2a (ENSJJAG00000002371) #22	Adamts17 (ENSJJAG00000023730) #24	Cers3 (ENSJJAG00000000723) #25	Lins1 (ENSJJAG00000015527) #26	Asb7 (ENSJJAG00000004197) #27	Aldh1a3 (ENSJJAG00000004688) #28	Lrrk1 (ENSJJAG00000021788) #29	ENSJJAG00000014263	Snrpa1 (ENSJJAG00000002769) #32	Pcsk6 (ENSJJAG00000018978) #34	Tm2d3 (ENSJJAG00000010106) #35	Tjp1 (ENSJJAG00000016703) #37	Nsmce3 (ENSJJAG00000006681)	ENSJJAG00000022341	Mcee (ENSJJAG00000019373)	Mphosph10 (ENSJJAG00000015017)
Kangaroo rat	MODERN SPECIES	334	Sv2b (ENSDORG00000008992) #9	Slco3a1 (ENSDORG00000026662) #10	St8sia2 (ENSDORG00000002035) #11	ENSDORG00000029319 #13	ENSDORG00000029445 #13	Rgma (ENSDORG00000027417) #14	Mctp2 (ENSDORG00000011605) #15	Nr2f2 (ENSDORG00000026489) #16	Arrdc4 (ENSDORG00000010971) #17	Fam169b (ENSDORG00000026590)	Pgpep1l (ENSDORG00000004531)	Igf1r (ENSDORG00000004530) #18	Synm (ENSDORG00000015364) #19	Ttc23 (ENSDORG00000011289) #20	ENSDORG00000011292 #21	Mef2a (ENSDORG00000015216) #22	Lysmd4 (ENSDORG00000015221) #23	Adamts17 (ENSDORG00000001554) #24	Cers3 (ENSDORG00000008447) #25	Lins1 (ENSDORG00000008450) #26	Asb7 (ENSDORG00000008451) #27	Aldh1a3 (ENSDORG00000000437) #28	Lrrk1 (ENSDORG00000012588) #29	Chsy1 (ENSDORG00000000921) #30	Selenos (ENSDORG00000000922) #31	Snrpa1 (ENSDORG00000000924) #32	Pcsk6 (ENSDORG00000000370) #34	Tm2d3 (ENSDORG00000009651) #35	Tarsl2 (ENSDORG00000009653) #36	Tjp1 (ENSDORG00000013416) #37	Entrep2 (ENSDORG00000004962)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00950000182940.b.a.a #9	ENSGT01080000257410.A.f #10	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00900000143686	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37
Hystricomorpha	ANCESTRAL SPECIES	40	ENSGT00950000182940.b.a.a #9	ENSGT01080000257410.A.f #10	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00530000063335.A
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000005942	ENSHGLG00000008276	ENSHGLG00000000498	ENSHGLG00000045800	ENSHGLG00000034785	ENSHGLG00000048628	ENSHGLG00000015153	ENSHGLG00000015148 #18	ENSHGLG00000047709	ENSHGLG00000039241	ENSHGLG00000015122 #19	ENSHGLG00000018053 #20	ENSHGLG00000041295	LRRC28 (ENSHGLG00000041379) #21	ENSHGLG00000039304	MEF2A (ENSHGLG00000015444) #22	ENSHGLG00000036552 #23	ENSHGLG00000038548 #23	ADAMTS17 (ENSHGLG00000014955) #24	CERS3 (ENSHGLG00000014885) #25	LINS (ENSHGLG00000034641) #26	ASB7 (ENSHGLG00000039786) #27	ENSHGLG00000005801	ALDH1A3 (ENSHGLG00000013998) #28	LRRK1 (ENSHGLG00000013404) #29	ENSHGLG00000013695 #30	VIMP (ENSHGLG00000013427) #31	SNRPA1 (ENSHGLG00000012987) #32	PCSK6 (ENSHGLG00000012908) #34	TM2D3 (ENSHGLG00000012566) #35	ENSHGLG00000011618 #36
Hystricomorpha_a	ANCESTRAL SPECIES	25	ENSGT00950000182940.b.a.a #9	ENSGT01080000257410.A.f #10	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00530000063335.A
Guinea pig	MODERN SPECIES	10	ENSCPOG00000013090 #8	SV2B (ENSCPOG00000008032) #9	SLCO3A1 (ENSCPOG00000010758) #10	ST8SIA2 (ENSCPOG00000032324) #11	CHD2 (ENSCPOG00000005800) #13	RGMA (ENSCPOG00000039106) #14	MCTP2 (ENSCPOG00000005659) #15	NR2F2 (ENSCPOG00000034464) #16	ARRDC4 (ENSCPOG00000030445) #17	ENSCPOG00000009133	ENSCPOG00000005390	IGF1R (ENSCPOG00000005399) #18	SYNM (ENSCPOG00000003728) #19	TTC23 (ENSCPOG00000003733) #20	LRRC28 (ENSCPOG00000007104) #21	MEF2A (ENSCPOG00000008716) #22	LYSMD4 (ENSCPOG00000035578) #23	ADAMTS17 (ENSCPOG00000009337) #24	LINS1 (ENSCPOG00000002249) #26	ASB7 (ENSCPOG00000038812) #27	ENSCPOG00000032250 #28	LRRK1 (ENSCPOG00000008329) #29	CHSY1 (ENSCPOG00000039485) #30	SELENOS (ENSCPOG00000022558) #31	SNRPA1 (ENSCPOG00000005735) #32	PCSK6 (ENSCPOG00000005722) #34	TM2D3 (ENSCPOG00000008845) #35	TARS3 (ENSCPOG00000008850) #36	TJP1 (ENSCPOG00000010928) #37	ENTREP2 (ENSCPOG00000002510)	APBA2 (ENSCPOG00000002505)
Hystricomorpha_b	ANCESTRAL SPECIES	20	ENSGT00950000182940.b.a.a #9	ENSGT01080000257410.A.f #10	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00530000063335.A
Long-tailed chinchilla	MODERN SPECIES	123	SLCO3A1 (ENSCLAG00000012887) #10	ST8SIA2 (ENSCLAG00000017062) #11	FAM174B (ENSCLAG00000017030) #12	CHD2 (ENSCLAG00000016269) #13	RGMA (ENSCLAG00000012655) #14	MCTP2 (ENSCLAG00000014312) #15	NR2F2 (ENSCLAG00000010451) #16	ARRDC4 (ENSCLAG00000009891) #17	ENSCLAG00000008778	PGPEP1L (ENSCLAG00000012011)	IGF1R (ENSCLAG00000012853) #18	SYNM (ENSCLAG00000012214) #19	TTC23 (ENSCLAG00000013426) #20	LRRC28 (ENSCLAG00000010143) #21	ENSCLAG00000013280	MEF2A (ENSCLAG00000010314) #22	LYSMD4 (ENSCLAG00000008806) #23	ADAMTS17 (ENSCLAG00000011560) #24	CERS3 (ENSCLAG00000010671) #25	LINS1 (ENSCLAG00000010190) #26	ASB7 (ENSCLAG00000009854) #27	ALDH1A3 (ENSCLAG00000010903) #28	LRRK1 (ENSCLAG00000015781) #29	CHSY1 (ENSCLAG00000010522) #30	SELENOS (ENSCLAG00000014232) #31	SNRPA1 (ENSCLAG00000016402) #32	PCSK6 (ENSCLAG00000013888) #34	TM2D3 (ENSCLAG00000012439) #35	TARS3 (ENSCLAG00000016873) #36	TJP1 (ENSCLAG00000017350) #37	ENTREP2 (ENSCLAG00000012714)
Degu	MODERN SPECIES	43	ENSODEG00000014647	CHD2 (ENSODEG00000016028) #13	RGMA (ENSODEG00000014943) #14	MCTP2 (ENSODEG00000016400) #15	NR2F2 (ENSODEG00000014227) #16	ENSODEG00000014492	ARRDC4 (ENSODEG00000014345) #17	ENSODEG00000014516	ENSODEG00000014398	ENSODEG00000015288	IGF1R (ENSODEG00000014019) #18	SYNM (ENSODEG00000014754) #19	TTC23 (ENSODEG00000014192) #20	LRRC28 (ENSODEG00000015213) #21	ENSODEG00000014090	MEF2A (ENSODEG00000014682) #22	LYSMD4 (ENSODEG00000014842) #23	ADAMTS17 (ENSODEG00000014089) #24	CERS3 (ENSODEG00000014221) #25	ENSODEG00000014357	LINS1 (ENSODEG00000015320) #26	ASB7 (ENSODEG00000014474) #27	ALDH1A3 (ENSODEG00000015012) #28	LRRK1 (ENSODEG00000014764) #29	ENSODEG00000014373	ENSODEG00000014481 #30	SELENOS (ENSODEG00000014112) #31	SNRPA1 (ENSODEG00000014103) #32	PCSK6 (ENSODEG00000013651) #34	TM2D3 (ENSODEG00000014026) #35	TARS3 (ENSODEG00000014454) #36
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00950000182940.b.a.a #9	ENSGT01080000257410.A.f #10	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00900000143686	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348.b #36	ENSGT00940000155164 #37
Marmotini	ANCESTRAL SPECIES	46	ENSGT00950000182940.b.a.a #9	ENSGT01080000257410.A.f #10	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00900000143686	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348.b #36	ENSGT00940000155164 #37
Alpin marmot	MODERN SPECIES	33	ST8SIA2 (ENSMMMG00000020737) #11	FAM174B (ENSMMMG00000020743) #12	CHD2 (ENSMMMG00000020748) #13	RGMA (ENSMMMG00000020770) #14	ENSMMMG00000020776	MCTP2 (ENSMMMG00000020783) #15	NR2F2 (ENSMMMG00000020806) #16	ENSMMMG00000020815	ARRDC4 (ENSMMMG00000020820) #17	ENSMMMG00000020824	ENSMMMG00000020860	IGF1R (ENSMMMG00000020867) #18	SYNM (ENSMMMG00000020891) #19	TTC23 (ENSMMMG00000020943) #20	LRRC28 (ENSMMMG00000020957) #21	MEF2A (ENSMMMG00000020978) #22	LYSMD4 (ENSMMMG00000021007) #23	ENSMMMG00000021014	ADAMTS17 (ENSMMMG00000021021) #24	ENSMMMG00000021070	CERS3 (ENSMMMG00000021095) #25	LINS1 (ENSMMMG00000021112) #26	ASB7 (ENSMMMG00000021137) #27	ENSMMMG00000021145	ALDH1A3 (ENSMMMG00000021150) #28	LRRK1 (ENSMMMG00000021169) #29	CHSY1 (ENSMMMG00000021189) #30	SELENOS (ENSMMMG00000021199) #31	SNRPA1 (ENSMMMG00000021206) #32	PCSK6 (ENSMMMG00000021221) #34	TM2D3 (ENSMMMG00000021261) #35
Marmotini_b	ANCESTRAL SPECIES	42	ENSGT00950000182940.b.a.a #9	ENSGT01080000257410.A.f #10	ENSGT01030000234535.F.a #11	ENSGT00730000111392 #12	ENSGT00940000155888 #13	ENSGT00950000183112.a #14	ENSGT00940000156291 #15	ENSGT00940000157540.A #16	ENSGT00940000160523 #17	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b.a #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348.b #36	ENSGT00940000155164 #37	ENSGT00530000063335.A
Squirrel	MODERN SPECIES	83	SV2B (ENSSTOG00000011621) #9	SLCO3A1 (ENSSTOG00000012990) #10	ST8SIA2 (ENSSTOG00000012529) #11	CHD2 (ENSSTOG00000001270) #13	RGMA (ENSSTOG00000023280) #14	MCTP2 (ENSSTOG00000026484) #15	ENSSTOG00000022562	NR2F2 (ENSSTOG00000025965) #16	ARRDC4 (ENSSTOG00000012169) #17	ENSSTOG00000021739	ENSSTOG00000011427	IGF1R (ENSSTOG00000011400) #18	SYNM (ENSSTOG00000022419) #19	TTC23 (ENSSTOG00000004362) #20	LRRC28 (ENSSTOG00000004380) #21	MEF2A (ENSSTOG00000028856) #22	LYSMD4 (ENSSTOG00000005427) #23	ADAMTS17 (ENSSTOG00000004497) #24	CERS3 (ENSSTOG00000004541) #25	LINS1 (ENSSTOG00000004562) #26	ASB7 (ENSSTOG00000024134) #27	ALDH1A3 (ENSSTOG00000008968) #28	LRRK1 (ENSSTOG00000008982) #29	ENSSTOG00000022852	CHSY1 (ENSSTOG00000009033) #30	SELENOS (ENSSTOG00000009048) #31	ENSSTOG00000009055 #32	ENSSTOG00000031974	PCSK6 (ENSSTOG00000009068) #34	TM2D3 (ENSSTOG00000009090) #35	TARS3 (ENSSTOG00000032725) #36
Arctic ground squirrel	MODERN SPECIES	144									ARRDC4 (ENSUPAG00010010582) #17	ENSUPAG00010010530	IGF1R (ENSUPAG00010010504) #18	SYNM (ENSUPAG00010010495) #19	TTC23 (ENSUPAG00010010490) #20	LRRC28 (ENSUPAG00010010471) #21	ENSUPAG00010010468	MEF2A (ENSUPAG00010010308) #22	LYSMD4 (ENSUPAG00010010303) #23	ENSUPAG00010010228	ADAMTS17 (ENSUPAG00010010165) #24	CERS3 (ENSUPAG00010010153) #25	LINS1 (ENSUPAG00010010149) #26	ASB7 (ENSUPAG00010010142) #27	ALDH1A3 (ENSUPAG00010010112) #28	ENSUPAG00010010103	LRRK1 (ENSUPAG00010010074) #29	CHSY1 (ENSUPAG00010010063) #30	SELENOS (ENSUPAG00010010044) #31	ENSUPAG00010010022 #32	PCSK6 (ENSUPAG00010009948) #34	TM2D3 (ENSUPAG00010009894) #35	ENSUPAG00010009887 #36
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005002515	SLCO3A1 (ENSSVLG00005002498) #10	ST8SIA2 (ENSSVLG00005002459) #11	FAM174B (ENSSVLG00005002437) #12	CHD2 (ENSSVLG00005002368) #13	RGMA (ENSSVLG00005002308) #14	ENSSVLG00005002275 #15	NR2F2 (ENSSVLG00005002243) #16	ENSSVLG00005002216 #17	ENSSVLG00005002151	IGF1R (ENSSVLG00005002096) #18	SYNM (ENSSVLG00005002041) #19	TTC23 (ENSSVLG00005001983) #20	ENSSVLG00005001915 #21	ENSSVLG00005001869	MEF2A (ENSSVLG00005001742) #22	LYSMD4 (ENSSVLG00005001675) #23	ADAMTS17 (ENSSVLG00005001631) #24	ENSSVLG00005001603	CERS3 (ENSSVLG00005001575) #25	LINS1 (ENSSVLG00005001550) #26	ASB7 (ENSSVLG00005001524) #27	ENSSVLG00005001507	ALDH1A3 (ENSSVLG00005001477) #28	LRRK1 (ENSSVLG00005001450) #29	CHSY1 (ENSSVLG00005001428) #30	SELENOS (ENSSVLG00005001411) #31	ENSSVLG00005001395	ENSSVLG00005001386	SNRPA1 (ENSSVLG00005001365) #32	PCSK6 (ENSSVLG00005001247) #34
Eurasian red squirrel	MODERN SPECIES	16	DEFB110 (ENSSVLG00005010300)	TFAP2D (ENSSVLG00005010245)	TFAP2B (ENSSVLG00005010190)	ENSSVLG00005010145	PKHD1 (ENSSVLG00005009423)	IL17A (ENSSVLG00005009355)	IL17F (ENSSVLG00005009322)	MCM3 (ENSSVLG00005009178)	ENSSVLG00005009141	EFHC1 (ENSSVLG00005008978)	TRAM2 (ENSSVLG00005008921)	ENSSVLG00005008875	ENSSVLG00005008845	ENSSVLG00005008800	TMEM14A (ENSSVLG00005008760)	ENSSVLG00005008692 #22	GSTA3 (ENSSVLG00005008617)	ENSSVLG00005008575	GSTA4 (ENSSVLG00005008538)	CILK1 (ENSSVLG00005008509)	FBXO9 (ENSSVLG00005008390)	GCM1 (ENSSVLG00005008319)	ELOVL5 (ENSSVLG00005008217)	GCLC (ENSSVLG00005008060)	KLHL31 (ENSSVLG00005008026)	LRRC1 (ENSSVLG00005008009)	MLIP (ENSSVLG00005007746)	TINAG (ENSSVLG00005007583)	FAM83B (ENSSVLG00005007545)	HCRTR2 (ENSSVLG00005007503)	GFRAL (ENSSVLG00005007462)
Lagomorpha	ANCESTRAL SPECIES	84										ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00940000163627
Rabbit	MODERN SPECIES	486										ENSOCUG00000005032	ENSOCUG00000014817	IGF1R (ENSOCUG00000014795) #18	ENSOCUG00000003341 #19	TTC23 (ENSOCUG00000006429) #20	LRRC28 (ENSOCUG00000006434) #21	MEF2A (ENSOCUG00000010966) #22	LYSMD4 (ENSOCUG00000024722) #23	ADAMTS17 (ENSOCUG00000015227) #24	CERS3 (ENSOCUG00000003828) #25	LINS1 (ENSOCUG00000016265) #26	ASB7 (ENSOCUG00000014169) #27
Pika	MODERN SPECIES	3887													SYNM (ENSOPRG00000014518) #19	TTC23 (ENSOPRG00000014548) #20	LRRC28 (ENSOPRG00000014566) #21	MEF2A (ENSOPRG00000014581) #22	ENSOPRG00000014601 #23