Mus	ANCESTRAL SPECIES		ENSGT01030000234535.F.a #9	ENSGT00730000111392 #10	ENSGT00940000155888 #11	ENSGT01030000235343	ENSGT00950000183112.a #12	ENSGT00940000156291 #13	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000169314 #33	ENSGT00940000159506 #34	ENSGT00940000158389 #36	ENSGT00940000159348 #35	ENSGT00940000155164 #37
Mus_A	ANCESTRAL SPECIES	1	ENSGT00730000111392 #10	ENSGT00940000155888 #11	ENSGT01030000235343	ENSGT00950000183112.a #12	ENSGT00940000156291 #13	ENSGT00860000135967 #14	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000169314 #33	ENSGT00940000159506 #34	ENSGT00940000158389 #36	ENSGT00940000159348 #35	ENSGT00940000155164 #37
Mus_B	ANCESTRAL SPECIES		ENSGT00730000111392 #10	ENSGT00940000155888 #11	ENSGT01030000235343	ENSGT00950000183112.a #12	ENSGT00940000156291 #13	ENSGT00860000135967 #14	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000169314 #33	ENSGT00940000159506 #34	ENSGT00940000158389 #36	ENSGT00940000159348 #35	ENSGT00940000155164 #37
Mus_C	ANCESTRAL SPECIES	13	ENSGT00730000111392 #10	ENSGT00940000155888 #11	ENSGT01030000235343	ENSGT00950000183112.a #12	ENSGT00940000156291 #13	ENSGT00860000135967 #14	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00940000156153.r	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #29	ENSGT01050000244857.C.a.a #30	ENSGT00390000015688 #31	ENSGT00940000153289.b #32	ENSGT00940000169314 #33	ENSGT00940000159506 #34	ENSGT00940000158389 #36	ENSGT00940000159348 #35	ENSGT00940000155164 #37
spretus	MODERN SPECIES	16	Sv2b (MGP_SPRETEiJ_G0030966) #7	Slco3a1 (MGP_SPRETEiJ_G0030965) #8	St8sia2 (MGP_SPRETEiJ_G0030964) #9	Fam174b (MGP_SPRETEiJ_G0030963) #10	Chd2 (MGP_SPRETEiJ_G0030962) #11	Rgma (MGP_SPRETEiJ_G0030961) #12	Mctp2 (MGP_SPRETEiJ_G0030960) #13	MGP_SPRETEiJ_G0030959 #14	Nr2f2 (MGP_SPRETEiJ_G0030958) #15	Arrdc4 (MGP_SPRETEiJ_G0030957) #16	MGP_SPRETEiJ_G0030956 #17	Igf1r (MGP_SPRETEiJ_G0030955) #18	Synm (MGP_SPRETEiJ_G0030954) #19	Ttc23 (MGP_SPRETEiJ_G0030953) #20	Lrrc28 (MGP_SPRETEiJ_G0030952) #21	Mef2a (MGP_SPRETEiJ_G0030951) #22	Lysmd4 (MGP_SPRETEiJ_G0030950) #23	Adamts17 (MGP_SPRETEiJ_G0030949) #24	Cers3 (MGP_SPRETEiJ_G0030948) #25	Lins1 (MGP_SPRETEiJ_G0030947) #26	Asb7 (MGP_SPRETEiJ_G0030946) #27	Aldh1a3 (MGP_SPRETEiJ_G0030945) #28	Lrrk1 (MGP_SPRETEiJ_G0030944) #29	Chsy1 (MGP_SPRETEiJ_G0030943) #30	Selenos (MGP_SPRETEiJ_G0030942) #31	Snrpa1 (MGP_SPRETEiJ_G0030941) #32	MGP_SPRETEiJ_G0030940 #33	Pcsk6 (MGP_SPRETEiJ_G0030939) #34	Tarsl2 (MGP_SPRETEiJ_G0030938) #35	Tm2d3 (MGP_SPRETEiJ_G0030937) #36	Tjp1 (MGP_SPRETEiJ_G0030936) #37
Steppe mouse	MODERN SPECIES	3350					Mctp2 (ENSMSIG00000005382) #13	ENSMSIG00000005302	Nr2f2 (ENSMSIG00000005262) #15	Arrdc4 (ENSMSIG00000005179) #16	ENSMSIG00000005165	Fam169b (ENSMSIG00000005051)	Pgpep1l (ENSMSIG00000005007) #17	Igf1r (ENSMSIG00000004944) #18	Synm (ENSMSIG00000004856) #19	Ttc23 (ENSMSIG00000004748) #20	Lrrc28 (ENSMSIG00000004688) #21	Mef2a (ENSMSIG00000004565) #22	Lysmd4 (ENSMSIG00000004542) #23
Mouse	MODERN SPECIES	16	Sv2b (ENSMUSG00000053025) #7	Slco3a1 (ENSMUSG00000025790) #8	St8sia2 (ENSMUSG00000025789) #9	Fam174b (ENSMUSG00000078670) #10	Chd2 (ENSMUSG00000078671) #11	Rgma (ENSMUSG00000070509) #12	Mctp2 (ENSMUSG00000032776) #13	Nr2f2 (ENSMUSG00000030551) #15	Arrdc4 (ENSMUSG00000042659) #16	Fam169b (ENSMUSG00000074071)	Pgpep1l (ENSMUSG00000030553) #17	Igf1r (ENSMUSG00000005533) #18	Synm (ENSMUSG00000030554) #19	Ttc23 (ENSMUSG00000030555) #20	Lrrc28 (ENSMUSG00000030556) #21	Mef2a (ENSMUSG00000030557) #22	Lysmd4 (ENSMUSG00000043831) #23	Adamts17 (ENSMUSG00000058145) #24	Cers3 (ENSMUSG00000030510) #25	Lins1 (ENSMUSG00000053091) #26	Asb7 (ENSMUSG00000030509) #27	Aldh1a3 (ENSMUSG00000015134) #28	Gm10974 (ENSMUSG00000078677)	Lrrk1 (ENSMUSG00000015133) #29	Chsy1 (ENSMUSG00000032640) #30	Selenos (ENSMUSG00000075701) #31	Snrpa1 (ENSMUSG00000030512) #32	Gm45213 (ENSMUSG00000108793)	Pcsk6 (ENSMUSG00000030513) #34	Tm2d3 (ENSMUSG00000078681) #36	Tarsl2 (ENSMUSG00000030515) #35
Ryukyu mouse	MODERN SPECIES	16	Slco3a1 (MGP_CAROLIEiJ_G0029863) #8	St8sia2 (MGP_CAROLIEiJ_G0029862) #9	Fam174b (MGP_CAROLIEiJ_G0029861) #10	Chd2 (MGP_CAROLIEiJ_G0029860) #11	Rgma (MGP_CAROLIEiJ_G0029859) #12	Mctp2 (MGP_CAROLIEiJ_G0029858) #13	MGP_CAROLIEiJ_G0029857 #14	Nr2f2 (MGP_CAROLIEiJ_G0029856) #15	Arrdc4 (MGP_CAROLIEiJ_G0029855) #16	MGP_CAROLIEiJ_G0029854 #17	Igf1r (MGP_CAROLIEiJ_G0029853) #18	Synm (MGP_CAROLIEiJ_G0029852) #19	Ttc23 (MGP_CAROLIEiJ_G0029851) #20	MGP_CAROLIEiJ_G0029850	Lrrc28 (MGP_CAROLIEiJ_G0029849) #21	Mef2a (MGP_CAROLIEiJ_G0029848) #22	Lysmd4 (MGP_CAROLIEiJ_G0029847) #23	Adamts17 (MGP_CAROLIEiJ_G0029846) #24	Cers3 (MGP_CAROLIEiJ_G0029845) #25	Lins1 (MGP_CAROLIEiJ_G0029844) #26	Asb7 (MGP_CAROLIEiJ_G0029843) #27	Aldh1a3 (MGP_CAROLIEiJ_G0029842) #28	Lrrk1 (MGP_CAROLIEiJ_G0029841) #29	Chsy1 (MGP_CAROLIEiJ_G0029840) #30	Selenos (MGP_CAROLIEiJ_G0029839) #31	Snrpa1 (MGP_CAROLIEiJ_G0029838) #32	MGP_CAROLIEiJ_G0029837 #33	Pcsk6 (MGP_CAROLIEiJ_G0029836) #34	Tm2d3 (MGP_CAROLIEiJ_G0029835) #36	Tarsl2 (MGP_CAROLIEiJ_G0029834) #35	MGP_CAROLIEiJ_G0029833 #37
Shrew mouse	MODERN SPECIES		Klhl25 (MGP_PahariEiJ_G0013088)	Akap13 (MGP_PahariEiJ_G0013087)	Sv2b (MGP_PahariEiJ_G0013086) #7	Slco3a1 (MGP_PahariEiJ_G0013085) #8	St8sia2 (MGP_PahariEiJ_G0013084) #9	Fam174b (MGP_PahariEiJ_G0013083) #10	Chd2 (MGP_PahariEiJ_G0013082) #11	Rgma (MGP_PahariEiJ_G0013081) #12	Mctp2 (MGP_PahariEiJ_G0013080) #13	Nr2f2 (MGP_PahariEiJ_G0013079) #15	Arrdc4 (MGP_PahariEiJ_G0013078) #16	Igf1r (MGP_PahariEiJ_G0013077) #18	Synm (MGP_PahariEiJ_G0013076) #19	Ttc23 (MGP_PahariEiJ_G0013075) #20	Lrrc28 (MGP_PahariEiJ_G0013074) #21	Mef2a (MGP_PahariEiJ_G0013073) #22	Lysmd4 (MGP_PahariEiJ_G0013072) #23	Adamts17 (MGP_PahariEiJ_G0013071) #24	Cers3 (MGP_PahariEiJ_G0013070) #25	Lins1 (MGP_PahariEiJ_G0013069) #26	Asb7 (MGP_PahariEiJ_G0013068) #27	Aldh1a3 (MGP_PahariEiJ_G0013067) #28	Lrrk1 (MGP_PahariEiJ_G0013066) #29	Chsy1 (MGP_PahariEiJ_G0013065) #30	Selenos (MGP_PahariEiJ_G0013064) #31	Snrpa1 (MGP_PahariEiJ_G0013063) #32	MGP_PahariEiJ_G0013062 #33	Pcsk6 (MGP_PahariEiJ_G0013061) #34	Tm2d3 (MGP_PahariEiJ_G0013060) #36	Tarsl2 (MGP_PahariEiJ_G0013059) #35	Tjp1 (MGP_PahariEiJ_G0013058) #37