Murinae	ANCESTRAL SPECIES		ENSGT00730000111392 #10	ENSGT00960000191040	ENSGT00940000155888 #11	ENSGT01030000235343	ENSGT00950000183112.a #12	ENSGT00940000156291 #13	ENSGT00940000157540.A #14	ENSGT00940000160523 #15	ENSGT00940000156153.r	ENSGT00510000048902.b #16	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000153289.b #33	ENSGT00940000159506 #35	ENSGT00940000158389 #36	ENSGT00940000159348 #37	ENSGT00940000155164	ENSGT00940000163627.d.a
Mus	ANCESTRAL SPECIES		ENSGT01030000234535.F.a #9	ENSGT00730000111392 #10	ENSGT00940000155888 #11	ENSGT01030000235343	ENSGT00950000183112.a #12	ENSGT00940000156291 #13	ENSGT00940000157540.A #14	ENSGT00940000160523 #15	ENSGT00940000156153.r	ENSGT00510000048902.b #16	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000153289.b #33	ENSGT00940000169314	ENSGT00940000159506 #35	ENSGT00940000158389 #36	ENSGT00940000159348 #37	ENSGT00940000155164
Mus_A	ANCESTRAL SPECIES	1	ENSGT00730000111392 #10	ENSGT00940000155888 #11	ENSGT01030000235343	ENSGT00950000183112.a #12	ENSGT00940000156291 #13	ENSGT00860000135967	ENSGT00940000157540.A #14	ENSGT00940000160523 #15	ENSGT00940000156153.r	ENSGT00510000048902.b #16	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000153289.b #33	ENSGT00940000169314	ENSGT00940000159506 #35	ENSGT00940000158389 #36	ENSGT00940000159348 #37	ENSGT00940000155164
Mus_B	ANCESTRAL SPECIES		ENSGT00730000111392 #10	ENSGT00940000155888 #11	ENSGT01030000235343	ENSGT00950000183112.a #12	ENSGT00940000156291 #13	ENSGT00860000135967	ENSGT00940000157540.A #14	ENSGT00940000160523 #15	ENSGT00940000156153.r	ENSGT00510000048902.b #16	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000153289.b #33	ENSGT00940000169314	ENSGT00940000159506 #35	ENSGT00940000158389 #36	ENSGT00940000159348 #37	ENSGT00940000155164
Mouse	MODERN SPECIES	16	Sv2b (ENSMUSG00000053025) #7	Slco3a1 (ENSMUSG00000025790) #8	St8sia2 (ENSMUSG00000025789) #9	Fam174b (ENSMUSG00000078670) #10	Chd2 (ENSMUSG00000078671) #11	Rgma (ENSMUSG00000070509) #12	Mctp2 (ENSMUSG00000032776) #13	Nr2f2 (ENSMUSG00000030551) #14	Arrdc4 (ENSMUSG00000042659) #15	Fam169b (ENSMUSG00000074071) #16	Pgpep1l (ENSMUSG00000030553) #17	Igf1r (ENSMUSG00000005533) #18	Synm (ENSMUSG00000030554) #19	Ttc23 (ENSMUSG00000030555) #20	Lrrc28 (ENSMUSG00000030556) #21	Mef2a (ENSMUSG00000030557) #22	Lysmd4 (ENSMUSG00000043831) #23	Adamts17 (ENSMUSG00000058145) #24	Cers3 (ENSMUSG00000030510) #25	Lins1 (ENSMUSG00000053091) #26	Asb7 (ENSMUSG00000030509) #27	Aldh1a3 (ENSMUSG00000015134) #28	Gm10974 (ENSMUSG00000078677) #29	Lrrk1 (ENSMUSG00000015133) #30	Chsy1 (ENSMUSG00000032640) #31	Selenos (ENSMUSG00000075701) #32	Snrpa1 (ENSMUSG00000030512) #33	Gm45213 (ENSMUSG00000108793) #34	Pcsk6 (ENSMUSG00000030513) #35	Tm2d3 (ENSMUSG00000078681) #36	Tarsl2 (ENSMUSG00000030515) #37
Mus_C	ANCESTRAL SPECIES	13	ENSGT00730000111392 #10	ENSGT00940000155888 #11	ENSGT01030000235343	ENSGT00950000183112.a #12	ENSGT00940000156291 #13	ENSGT00860000135967	ENSGT00940000157540.A #14	ENSGT00940000160523 #15	ENSGT00940000156153.r	ENSGT00510000048902.b #16	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #27	ENSGT00940000158815 #28	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000153289.b #33	ENSGT00940000169314	ENSGT00940000159506 #35	ENSGT00940000158389 #36	ENSGT00940000159348 #37	ENSGT00940000155164
Steppe mouse	MODERN SPECIES	3350					Mctp2 (ENSMSIG00000005382) #13	ENSMSIG00000005302	Nr2f2 (ENSMSIG00000005262) #14	Arrdc4 (ENSMSIG00000005179) #15	ENSMSIG00000005165	Fam169b (ENSMSIG00000005051) #16	Pgpep1l (ENSMSIG00000005007) #17	Igf1r (ENSMSIG00000004944) #18	Synm (ENSMSIG00000004856) #19	Ttc23 (ENSMSIG00000004748) #20	Lrrc28 (ENSMSIG00000004688) #21	Mef2a (ENSMSIG00000004565) #22	Lysmd4 (ENSMSIG00000004542) #23
spretus	MODERN SPECIES	16	Sv2b (MGP_SPRETEiJ_G0030966) #7	Slco3a1 (MGP_SPRETEiJ_G0030965) #8	St8sia2 (MGP_SPRETEiJ_G0030964) #9	Fam174b (MGP_SPRETEiJ_G0030963) #10	Chd2 (MGP_SPRETEiJ_G0030962) #11	Rgma (MGP_SPRETEiJ_G0030961) #12	Mctp2 (MGP_SPRETEiJ_G0030960) #13	MGP_SPRETEiJ_G0030959	Nr2f2 (MGP_SPRETEiJ_G0030958) #14	Arrdc4 (MGP_SPRETEiJ_G0030957) #15	MGP_SPRETEiJ_G0030956 #17	Igf1r (MGP_SPRETEiJ_G0030955) #18	Synm (MGP_SPRETEiJ_G0030954) #19	Ttc23 (MGP_SPRETEiJ_G0030953) #20	Lrrc28 (MGP_SPRETEiJ_G0030952) #21	Mef2a (MGP_SPRETEiJ_G0030951) #22	Lysmd4 (MGP_SPRETEiJ_G0030950) #23	Adamts17 (MGP_SPRETEiJ_G0030949) #24	Cers3 (MGP_SPRETEiJ_G0030948) #25	Lins1 (MGP_SPRETEiJ_G0030947) #26	Asb7 (MGP_SPRETEiJ_G0030946) #27	Aldh1a3 (MGP_SPRETEiJ_G0030945) #28	Lrrk1 (MGP_SPRETEiJ_G0030944) #30	Chsy1 (MGP_SPRETEiJ_G0030943) #31	Selenos (MGP_SPRETEiJ_G0030942) #32	Snrpa1 (MGP_SPRETEiJ_G0030941) #33	MGP_SPRETEiJ_G0030940	Pcsk6 (MGP_SPRETEiJ_G0030939) #35	Tarsl2 (MGP_SPRETEiJ_G0030938) #37	Tm2d3 (MGP_SPRETEiJ_G0030937) #36	Tjp1 (MGP_SPRETEiJ_G0030936)
Ryukyu mouse	MODERN SPECIES	16	Slco3a1 (MGP_CAROLIEiJ_G0029863) #8	St8sia2 (MGP_CAROLIEiJ_G0029862) #9	Fam174b (MGP_CAROLIEiJ_G0029861) #10	Chd2 (MGP_CAROLIEiJ_G0029860) #11	Rgma (MGP_CAROLIEiJ_G0029859) #12	Mctp2 (MGP_CAROLIEiJ_G0029858) #13	MGP_CAROLIEiJ_G0029857	Nr2f2 (MGP_CAROLIEiJ_G0029856) #14	Arrdc4 (MGP_CAROLIEiJ_G0029855) #15	MGP_CAROLIEiJ_G0029854 #17	Igf1r (MGP_CAROLIEiJ_G0029853) #18	Synm (MGP_CAROLIEiJ_G0029852) #19	Ttc23 (MGP_CAROLIEiJ_G0029851) #20	MGP_CAROLIEiJ_G0029850	Lrrc28 (MGP_CAROLIEiJ_G0029849) #21	Mef2a (MGP_CAROLIEiJ_G0029848) #22	Lysmd4 (MGP_CAROLIEiJ_G0029847) #23	Adamts17 (MGP_CAROLIEiJ_G0029846) #24	Cers3 (MGP_CAROLIEiJ_G0029845) #25	Lins1 (MGP_CAROLIEiJ_G0029844) #26	Asb7 (MGP_CAROLIEiJ_G0029843) #27	Aldh1a3 (MGP_CAROLIEiJ_G0029842) #28	Lrrk1 (MGP_CAROLIEiJ_G0029841) #30	Chsy1 (MGP_CAROLIEiJ_G0029840) #31	Selenos (MGP_CAROLIEiJ_G0029839) #32	Snrpa1 (MGP_CAROLIEiJ_G0029838) #33	MGP_CAROLIEiJ_G0029837	Pcsk6 (MGP_CAROLIEiJ_G0029836) #35	Tm2d3 (MGP_CAROLIEiJ_G0029835) #36	Tarsl2 (MGP_CAROLIEiJ_G0029834) #37	MGP_CAROLIEiJ_G0029833
Shrew mouse	MODERN SPECIES		Klhl25 (MGP_PahariEiJ_G0013088)	Akap13 (MGP_PahariEiJ_G0013087)	Sv2b (MGP_PahariEiJ_G0013086) #7	Slco3a1 (MGP_PahariEiJ_G0013085) #8	St8sia2 (MGP_PahariEiJ_G0013084) #9	Fam174b (MGP_PahariEiJ_G0013083) #10	Chd2 (MGP_PahariEiJ_G0013082) #11	Rgma (MGP_PahariEiJ_G0013081) #12	Mctp2 (MGP_PahariEiJ_G0013080) #13	Nr2f2 (MGP_PahariEiJ_G0013079) #14	Arrdc4 (MGP_PahariEiJ_G0013078) #15	Igf1r (MGP_PahariEiJ_G0013077) #18	Synm (MGP_PahariEiJ_G0013076) #19	Ttc23 (MGP_PahariEiJ_G0013075) #20	Lrrc28 (MGP_PahariEiJ_G0013074) #21	Mef2a (MGP_PahariEiJ_G0013073) #22	Lysmd4 (MGP_PahariEiJ_G0013072) #23	Adamts17 (MGP_PahariEiJ_G0013071) #24	Cers3 (MGP_PahariEiJ_G0013070) #25	Lins1 (MGP_PahariEiJ_G0013069) #26	Asb7 (MGP_PahariEiJ_G0013068) #27	Aldh1a3 (MGP_PahariEiJ_G0013067) #28	Lrrk1 (MGP_PahariEiJ_G0013066) #30	Chsy1 (MGP_PahariEiJ_G0013065) #31	Selenos (MGP_PahariEiJ_G0013064) #32	Snrpa1 (MGP_PahariEiJ_G0013063) #33	MGP_PahariEiJ_G0013062	Pcsk6 (MGP_PahariEiJ_G0013061) #35	Tm2d3 (MGP_PahariEiJ_G0013060) #36	Tarsl2 (MGP_PahariEiJ_G0013059) #37	Tjp1 (MGP_PahariEiJ_G0013058)
Rat	MODERN SPECIES		Fam174b (ENSRNOG00000065271)	Chd2 (ENSRNOG00000012716) #11	Rgma (ENSRNOG00000012874) #12	Mctp2 (ENSRNOG00000009932) #13	Nr2f2 (ENSRNOG00000010308) #14	ENSRNOG00000065206	Arrdc4 (ENSRNOG00000010775) #15	LOC102551255 (ENSRNOG00000049257)	Fam169b (ENSRNOG00000022822) #16	Pgpep1l (ENSRNOG00000070202) #17	Igf1r (ENSRNOG00000014187) #18	LOC108349848 (ENSRNOG00000070349)	Synm (ENSRNOG00000014030) #19	Ttc23 (ENSRNOG00000013877) #20	Lrrc28 (ENSRNOG00000023274) #21	Mef2a (ENSRNOG00000047756) #22	Lysmd4 (ENSRNOG00000050624) #23	Adamts17 (ENSRNOG00000037080) #24	Cers3 (ENSRNOG00000013823) #25	Lins1 (ENSRNOG00000042776) #26	Asb7 (ENSRNOG00000013795) #27	Aldh1a3 (ENSRNOG00000052070) #28	Lrrk1 (ENSRNOG00000012730) #30	Chsy1 (ENSRNOG00000012698) #31	Selenos (ENSRNOG00000012576) #32	Snrpa1 (ENSRNOG00000011932) #33	ENSRNOG00000070428	Pcsk6 (ENSRNOG00000011526) #35	AABR07004134.1 (ENSRNOG00000056928)	Tm2d3 (ENSRNOG00000011290) #36	Tars3 (ENSRNOG00000024460) #37