Hystricomorpha	ANCESTRAL SPECIES	40	ENSGT00950000182940.b.a.a	ENSGT01080000257410.A.f	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a	ENSGT00940000156291	ENSGT00940000157540.A	ENSGT00940000160523	ENSGT00510000048902.b #12	ENSGT00390000015368.a.b #13	ENSGT00940000156682 #14	ENSGT00940000159268 #17	ENSGT00530000063847.a #18	ENSGT00940000157771 #20	ENSGT00940000156205 #22	ENSGT00940000160583 #24	ENSGT00940000158773 #25	ENSGT01030000234515.a.b.a.b #26	ENSGT00390000001790 #27	ENSGT00940000158068 #28	ENSGT00940000158815 #30	ENSGT00940000160363 #31	ENSGT01050000244857.C.a.a #32	ENSGT00390000015688 #33	ENSGT00940000153289.b #34	ENSGT00940000159506 #35	ENSGT00940000158389 #36	ENSGT00940000159348 #37	ENSGT00940000155164	ENSGT00530000063335.A
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000005942 #7	ENSHGLG00000008276 #8	ENSHGLG00000000498 #9	ENSHGLG00000045800 #10	ENSHGLG00000034785 #11	ENSHGLG00000048628 #12	ENSHGLG00000015153 #13	ENSHGLG00000015148 #14	ENSHGLG00000047709 #15	ENSHGLG00000039241 #16	ENSHGLG00000015122 #17	ENSHGLG00000018053 #18	ENSHGLG00000041295 #19	LRRC28 (ENSHGLG00000041379) #20	ENSHGLG00000039304 #21	MEF2A (ENSHGLG00000015444) #22	ENSHGLG00000036552 #23	ENSHGLG00000038548 #24	ADAMTS17 (ENSHGLG00000014955) #25	CERS3 (ENSHGLG00000014885) #26	LINS (ENSHGLG00000034641) #27	ASB7 (ENSHGLG00000039786) #28	ENSHGLG00000005801 #29	ALDH1A3 (ENSHGLG00000013998) #30	LRRK1 (ENSHGLG00000013404) #31	ENSHGLG00000013695 #32	VIMP (ENSHGLG00000013427) #33	SNRPA1 (ENSHGLG00000012987) #34	PCSK6 (ENSHGLG00000012908) #35	TM2D3 (ENSHGLG00000012566) #36	ENSHGLG00000011618 #37
Hystricomorpha_a	ANCESTRAL SPECIES	25	ENSGT00950000182940.b.a.a	ENSGT01080000257410.A.f	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a	ENSGT00940000156291	ENSGT00940000157540.A	ENSGT00940000160523	ENSGT00510000048902.b #12	ENSGT00390000015368.a.b #13	ENSGT00940000156682 #14	ENSGT00940000159268 #17	ENSGT00530000063847.a #18	ENSGT00940000157771 #20	ENSGT00940000156205 #22	ENSGT00940000160583 #24	ENSGT00940000158773 #25	ENSGT01030000234515.a.b.a.b #26	ENSGT00390000001790 #27	ENSGT00940000158068 #28	ENSGT00940000158815 #30	ENSGT00940000160363 #31	ENSGT01050000244857.C.a.a #32	ENSGT00390000015688 #33	ENSGT00940000153289.b #34	ENSGT00940000159506 #35	ENSGT00940000158389 #36	ENSGT00940000159348 #37	ENSGT00940000155164	ENSGT00530000063335.A
Guinea pig	MODERN SPECIES	10	ENSCPOG00000013090	SV2B (ENSCPOG00000008032)	SLCO3A1 (ENSCPOG00000010758)	ST8SIA2 (ENSCPOG00000032324)	CHD2 (ENSCPOG00000005800)	RGMA (ENSCPOG00000039106)	MCTP2 (ENSCPOG00000005659)	NR2F2 (ENSCPOG00000034464)	ARRDC4 (ENSCPOG00000030445)	ENSCPOG00000009133 #12	ENSCPOG00000005390 #13	IGF1R (ENSCPOG00000005399) #14	SYNM (ENSCPOG00000003728) #17	TTC23 (ENSCPOG00000003733) #18	LRRC28 (ENSCPOG00000007104) #20	MEF2A (ENSCPOG00000008716) #22	LYSMD4 (ENSCPOG00000035578) #24	ADAMTS17 (ENSCPOG00000009337) #25	LINS1 (ENSCPOG00000002249) #27	ASB7 (ENSCPOG00000038812) #28	ENSCPOG00000032250 #30	LRRK1 (ENSCPOG00000008329) #31	CHSY1 (ENSCPOG00000039485) #32	SELENOS (ENSCPOG00000022558) #33	SNRPA1 (ENSCPOG00000005735) #34	PCSK6 (ENSCPOG00000005722) #35	TM2D3 (ENSCPOG00000008845) #36	TARS3 (ENSCPOG00000008850) #37	TJP1 (ENSCPOG00000010928)	ENTREP2 (ENSCPOG00000002510)	APBA2 (ENSCPOG00000002505)
Hystricomorpha_b	ANCESTRAL SPECIES	20	ENSGT00950000182940.b.a.a	ENSGT01080000257410.A.f	ENSGT01030000234535.F.a	ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a	ENSGT00940000156291	ENSGT00940000157540.A	ENSGT00940000160523	ENSGT00510000048902.b #12	ENSGT00390000015368.a.b #13	ENSGT00940000156682 #14	ENSGT00940000159268 #17	ENSGT00530000063847.a #18	ENSGT00940000157771 #20	ENSGT00940000156205 #22	ENSGT00940000160583 #24	ENSGT00940000158773 #25	ENSGT01030000234515.a.b.a.b #26	ENSGT00390000001790 #27	ENSGT00940000158068 #28	ENSGT00940000158815 #30	ENSGT00940000160363 #31	ENSGT01050000244857.C.a.a #32	ENSGT00390000015688 #33	ENSGT00940000153289.b #34	ENSGT00940000159506 #35	ENSGT00940000158389 #36	ENSGT00940000159348 #37	ENSGT00940000155164	ENSGT00530000063335.A
Long-tailed chinchilla	MODERN SPECIES	123	SLCO3A1 (ENSCLAG00000012887)	ST8SIA2 (ENSCLAG00000017062)	FAM174B (ENSCLAG00000017030)	CHD2 (ENSCLAG00000016269)	RGMA (ENSCLAG00000012655)	MCTP2 (ENSCLAG00000014312)	NR2F2 (ENSCLAG00000010451)	ARRDC4 (ENSCLAG00000009891)	ENSCLAG00000008778 #12	PGPEP1L (ENSCLAG00000012011) #13	IGF1R (ENSCLAG00000012853) #14	SYNM (ENSCLAG00000012214) #17	TTC23 (ENSCLAG00000013426) #18	LRRC28 (ENSCLAG00000010143) #20	ENSCLAG00000013280	MEF2A (ENSCLAG00000010314) #22	LYSMD4 (ENSCLAG00000008806) #24	ADAMTS17 (ENSCLAG00000011560) #25	CERS3 (ENSCLAG00000010671) #26	LINS1 (ENSCLAG00000010190) #27	ASB7 (ENSCLAG00000009854) #28	ALDH1A3 (ENSCLAG00000010903) #30	LRRK1 (ENSCLAG00000015781) #31	CHSY1 (ENSCLAG00000010522) #32	SELENOS (ENSCLAG00000014232) #33	SNRPA1 (ENSCLAG00000016402) #34	PCSK6 (ENSCLAG00000013888) #35	TM2D3 (ENSCLAG00000012439) #36	TARS3 (ENSCLAG00000016873) #37	TJP1 (ENSCLAG00000017350)	ENTREP2 (ENSCLAG00000012714)
Degu	MODERN SPECIES	43	ENSODEG00000014647	CHD2 (ENSODEG00000016028)	RGMA (ENSODEG00000014943)	MCTP2 (ENSODEG00000016400)	NR2F2 (ENSODEG00000014227)	ENSODEG00000014492	ARRDC4 (ENSODEG00000014345)	ENSODEG00000014516	ENSODEG00000014398 #12	ENSODEG00000015288 #13	IGF1R (ENSODEG00000014019) #14	SYNM (ENSODEG00000014754) #17	TTC23 (ENSODEG00000014192) #18	LRRC28 (ENSODEG00000015213) #20	ENSODEG00000014090	MEF2A (ENSODEG00000014682) #22	LYSMD4 (ENSODEG00000014842) #24	ADAMTS17 (ENSODEG00000014089) #25	CERS3 (ENSODEG00000014221) #26	ENSODEG00000014357	LINS1 (ENSODEG00000015320) #27	ASB7 (ENSODEG00000014474) #28	ALDH1A3 (ENSODEG00000015012) #30	LRRK1 (ENSODEG00000014764) #31	ENSODEG00000014373	ENSODEG00000014481 #32	SELENOS (ENSODEG00000014112) #33	SNRPA1 (ENSODEG00000014103) #34	PCSK6 (ENSODEG00000013651) #35	TM2D3 (ENSODEG00000014026) #36	TARS3 (ENSODEG00000014454) #37