Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00950000182940.b.a.a #8	ENSGT01080000257410.A.f #9	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000153289.b #33	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00950000182940.b.a.a #8	ENSGT01080000257410.A.f #9	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000153289.b #33	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37
Camelidae	ANCESTRAL SPECIES	21	ENSGT00940000154146.a #7	ENSGT00950000182940.b.a.a #8	ENSGT01080000257410.A.f #9	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000153289.b #33	ENSGT00940000159506 #34	ENSGT00940000158389 #35	ENSGT00940000159348 #36	ENSGT00940000155164 #37	ENSGT00530000063335.A
Arabian camel	MODERN SPECIES	19	AKAP13 (ENSCDRG00005020272) #7	SV2B (ENSCDRG00005020222) #8	SLCO3A1 (ENSCDRG00005020198) #9	ST8SIA2 (ENSCDRG00005020171) #10	FAM174B (ENSCDRG00005020166) #11	CHD2 (ENSCDRG00005020100) #12	RGMA (ENSCDRG00005020035) #13	MCTP2 (ENSCDRG00005019963) #14	NR2F2 (ENSCDRG00005019929) #15	ARRDC4 (ENSCDRG00005019889) #16	PGPEP1L (ENSCDRG00005019859) #17	IGF1R (ENSCDRG00005019740) #18	ENSCDRG00005019723 #19	TTC23 (ENSCDRG00005019711) #20	LRRC28 (ENSCDRG00005019671) #21	MEF2A (ENSCDRG00005019509) #22	LYSMD4 (ENSCDRG00005019481) #23	ADAMTS17 (ENSCDRG00005018609) #24	CERS3 (ENSCDRG00005018454) #25	ENSCDRG00005018433 #26	ENSCDRG00005018378 #27	ASB7 (ENSCDRG00005018331) #28	ALDH1A3 (ENSCDRG00005018258) #29	LRRK1 (ENSCDRG00005018052) #30	CHSY1 (ENSCDRG00005018015) #31	ENSCDRG00005017960 #32	SNRPA1 (ENSCDRG00005017916) #33	PCSK6 (ENSCDRG00005017712) #34	TM2D3 (ENSCDRG00005017633) #35	TARS3 (ENSCDRG00005005662) #36	TJP1 (ENSCDRG00005005213) #37
Alpaca	MODERN SPECIES	1679																MEF2A (ENSVPAG00000011436) #22
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT01020000230695	ENSGT01080000257410.A.f #9	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000155607	ENSGT00940000156234.f	ENSGT00940000154713.A	ENSGT00940000157895	ENSGT00940000155050
Cetacea	ANCESTRAL SPECIES	2	ENSGT01020000230695	ENSGT01080000257410.A.f #9	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000155607	ENSGT00940000156234.f.a	ENSGT00940000154713.A	ENSGT00940000157895	ENSGT00940000155050	ENSGT00940000158222
Blue whale	MODERN SPECIES	11	SLCO3A1 (ENSBMSG00010006884) #9	ST8SIA2 (ENSBMSG00010006912) #10	FAM174B (ENSBMSG00010006975) #11	CHD2 (ENSBMSG00010007020) #12	RGMA (ENSBMSG00010007129) #13	MCTP2 (ENSBMSG00010007150) #14	ENSBMSG00010007193	NR2F2 (ENSBMSG00010007223) #15	ENSBMSG00010007241 #16	ENSBMSG00010007279	ENSBMSG00010007338 #17	IGF1R (ENSBMSG00010007366) #18	SYNM (ENSBMSG00010007452) #19	TTC23 (ENSBMSG00010007472) #20	LRRC28 (ENSBMSG00010007523) #21	MEF2A (ENSBMSG00010007583) #22	ENSBMSG00010007622	LYSMD4 (ENSBMSG00010007634) #23	ADAMTS17 (ENSBMSG00010007680) #24	CERS3 (ENSBMSG00010007841) #25	LINS1 (ENSBMSG00010007852) #26	ASB7 (ENSBMSG00010007863) #28	ENSBMSG00010007868	ALDH1A3 (ENSBMSG00010007886) #29	LRRK1 (ENSBMSG00010007999) #30	CHSY1 (ENSBMSG00010008026) #31	SELENOS (ENSBMSG00010008057) #32	GABRG3 (ENSBMSG00010008082)	ENSBMSG00010008110	GABRB3 (ENSBMSG00010008145)	ENSBMSG00010008226
Odontoceti	ANCESTRAL SPECIES	2	ENSGT01080000257410.A.f #9	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00490000044635	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000155607	ENSGT00940000156234.f.a	ENSGT00940000154713.A	ENSGT00940000157895	ENSGT00940000155050	ENSGT00940000158222
Sperm whale	MODERN SPECIES	2	ST8SIA2 (ENSPCTG00005012586) #10	FAM174B (ENSPCTG00005012546) #11	CHD2 (ENSPCTG00005012431) #12	ENSPCTG00005012383	ENSPCTG00005012340	MCTP2 (ENSPCTG00005012205) #14	ENSPCTG00005012170	NR2F2 (ENSPCTG00005012099)	ARRDC4 (ENSPCTG00005011970) #16	ENSPCTG00005011931	ENSPCTG00005011890 #17	IGF1R (ENSPCTG00005011814) #18	SYNM (ENSPCTG00005011737) #19	TTC23 (ENSPCTG00005011662) #20	LRRC28 (ENSPCTG00005011551) #21	MEF2A (ENSPCTG00005011471) #22	LYSMD4 (ENSPCTG00005011348) #23	ADAMTS17 (ENSPCTG00005011170) #24	CERS3 (ENSPCTG00005011060) #25	LINS1 (ENSPCTG00005010944) #26	ASB7 (ENSPCTG00005010877) #28	ALDH1A3 (ENSPCTG00005010651) #29	LRRK1 (ENSPCTG00005010536) #30	ENSPCTG00005010476	CHSY1 (ENSPCTG00005010429) #31	SELENOS (ENSPCTG00005010343) #32	GABRG3 (ENSPCTG00005010080)	GABRA5 (ENSPCTG00005010049)	GABRB3 (ENSPCTG00005009807)	ATP10A (ENSPCTG00005009469)	UBE3A (ENSPCTG00005009396)
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000155338.a	ENSGT00940000157540.A #15	ENSGT00490000044635	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000155607	ENSGT00940000156234.f.a	ENSGT00940000154713.A	ENSGT00940000157895	ENSGT00940000155050	ENSGT00940000158222
Dolphin	MODERN SPECIES	1346																MEF2A (ENSTTRG00000015831) #22	LYSMD4 (ENSTTRG00000015847) #23
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00950000183112.a #13	ENSGT00940000158961.f	ENSGT00940000155909.i	ENSGT00940000156291 #14	ENSGT00940000155338.a	ENSGT00940000157540.A #15	ENSGT00900000143321	ENSGT00940000174256	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000155607	ENSGT00940000156234.f.a	ENSGT00940000154713.A	ENSGT00940000157895	ENSGT00940000155050	ENSGT00940000158222
Vaquita	MODERN SPECIES	11	RGMA (ENSPSNG00000004118) #13	ENSPSNG00000004134	ENSPSNG00000004145	MCTP2 (ENSPSNG00000004190) #14	ENSPSNG00000004222	NR2F2 (ENSPSNG00000006377) #15	ENSPSNG00000006420	ENSPSNG00000006439	ARRDC4 (ENSPSNG00000006485) #16	ENSPSNG00000006523	ENSPSNG00000006559 #17	IGF1R (ENSPSNG00000006634) #18	SYNM (ENSPSNG00000006738) #19	TTC23 (ENSPSNG00000006787) #20	LRRC28 (ENSPSNG00000006850) #21	MEF2A (ENSPSNG00000006923) #22	LYSMD4 (ENSPSNG00000007014) #23	ADAMTS17 (ENSPSNG00000007060) #24	CERS3 (ENSPSNG00000007138) #25	LINS1 (ENSPSNG00000007209) #26	ASB7 (ENSPSNG00000007278) #28	ALDH1A3 (ENSPSNG00000007352) #29	LRRK1 (ENSPSNG00000007511) #30	CHSY1 (ENSPSNG00000007562) #31	SELENOS (ENSPSNG00000007584) #32	GABRG3 (ENSPSNG00000007646)	ENSPSNG00000007765	GABRB3 (ENSPSNG00000007853)	ATP10A (ENSPSNG00000008042)	UBE3A (ENSPSNG00000008097)	SNRPN (ENSPSNG00000008506)
Monodontidae	ANCESTRAL SPECIES	22	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000158961.f	ENSGT00940000155909.i	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00900000143321	ENSGT00940000174256	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000155607	ENSGT00940000156234.f.a	ENSGT00940000154713.A	ENSGT00940000157895	ENSGT00940000155050	ENSGT00940000158222
Narwhal	MODERN SPECIES	308	RGMA (ENSMMNG00015010439) #13	ENSMMNG00015010463	ENSMMNG00015010479	MCTP2 (ENSMMNG00015010543) #14	ENSMMNG00015010668	NR2F2 (ENSMMNG00015010693) #15	ENSMMNG00015010730	ENSMMNG00015010739	ARRDC4 (ENSMMNG00015010758) #16	ENSMMNG00015010816	ENSMMNG00015010840 #17	IGF1R (ENSMMNG00015010863) #18	SYNM (ENSMMNG00015010915) #19	TTC23 (ENSMMNG00015010960) #20	LRRC28 (ENSMMNG00015010990) #21	MEF2A (ENSMMNG00015011012) #22	LYSMD4 (ENSMMNG00015011058) #23	ADAMTS17 (ENSMMNG00015011079) #24	CERS3 (ENSMMNG00015011108) #25	LINS1 (ENSMMNG00015011141) #26	ASB7 (ENSMMNG00015011178) #28	ALDH1A3 (ENSMMNG00015011205) #29	LRRK1 (ENSMMNG00015011239) #30	CHSY1 (ENSMMNG00015011277) #31	SELENOS (ENSMMNG00015011300) #32	GABRG3 (ENSMMNG00015011324)	ENSMMNG00015011346	GABRB3 (ENSMMNG00015011375)	ENSMMNG00015011410	ENSMMNG00015011428	UBE3A (ENSMMNG00015011456)
Beluga whale	MODERN SPECIES	52	CHD2 (ENSDLEG00000006361) #12	RGMA (ENSDLEG00000006705) #13	SLC25A30 (ENSDLEG00000006711)	ENSDLEG00000006716	MCTP2 (ENSDLEG00000006742) #14	NR2F2 (ENSDLEG00000006824) #15	ENSDLEG00000006828	ENSDLEG00000006833	ARRDC4 (ENSDLEG00000006837) #16	ENSDLEG00000006848	ENSDLEG00000006861 #17	IGF1R (ENSDLEG00000006865) #18	SYNM (ENSDLEG00000006876) #19	TTC23 (ENSDLEG00000006882) #20	LRRC28 (ENSDLEG00000006888) #21	MEF2A (ENSDLEG00000006900) #22	LYSMD4 (ENSDLEG00000006906) #23	ADAMTS17 (ENSDLEG00000006922) #24	CERS3 (ENSDLEG00000006971) #25	LINS1 (ENSDLEG00000006980) #26	ASB7 (ENSDLEG00000006990) #28	ALDH1A3 (ENSDLEG00000006994) #29	LRRK1 (ENSDLEG00000007002) #30	CHSY1 (ENSDLEG00000007027) #31	SELENOS (ENSDLEG00000007037) #32	GABRG3 (ENSDLEG00000007042)	GABRA5 (ENSDLEG00000007067)	GABRB3 (ENSDLEG00000007078)	ATP10A (ENSDLEG00000007092)	UBE3A (ENSDLEG00000007113)	SNRPN (ENSDLEG00000014174)
Pecora	ANCESTRAL SPECIES	18	ENSGT01020000230695	ENSGT01080000257410.A.f #9	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT00390000018141.i.a.b.b.b.b	ENSGT01100000263481.n.a.b.b	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000155607	ENSGT00940000156234.f	ENSGT00940000154713.A
Yarkand deer	MODERN SPECIES	4	ENSCHYG00000007955	CHD2 (ENSCHYG00000007751) #12	RGMA (ENSCHYG00000007668) #13	MCTP2 (ENSCHYG00000007330) #14	ENSCHYG00000007293	ENSCHYG00000007283	ENSCHYG00000007264	ENSCHYG00000007241	ARRDC4 (ENSCHYG00000007186) #16	ENSCHYG00000007128	ENSCHYG00000007085 #17	IGF1R (ENSCHYG00000006955) #18	SYNM (ENSCHYG00000006912) #19	TTC23 (ENSCHYG00000006873) #20	LRRC28 (ENSCHYG00000006817) #21	MEF2A (ENSCHYG00000006733) #22	ENSCHYG00000006649 #23	ADAMTS17 (ENSCHYG00000006512) #24	CERS3 (ENSCHYG00000006461) #25	LINS1 (ENSCHYG00000006425) #26	ASB7 (ENSCHYG00000006398) #28	ENSCHYG00000006386	ALDH1A3 (ENSCHYG00000006301) #29	LRRK1 (ENSCHYG00000005930) #30	CHSY1 (ENSCHYG00000005857) #31	SELENOS (ENSCHYG00000005762) #32	GABRG3 (ENSCHYG00000005703)	GABRA5 (ENSCHYG00000005654)	ENSCHYG00000005633	GABRB3 (ENSCHYG00000005619)	ENSCHYG00000005608
Percora_a	ANCESTRAL SPECIES	20	ENSGT01080000257410.A.f #9	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000153342.b.j	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT00390000018141.i.a.b.b.b.b	ENSGT01100000263481.n.a.b.b	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000155607	ENSGT00940000156234.f	ENSGT00940000154713.A
Siberian musk deer	MODERN SPECIES	1279						NR2F2 (ENSMMSG00000013806) #15	ENSMMSG00000013831	ARRDC4 (ENSMMSG00000013851) #16	ENSMMSG00000013884	ENSMMSG00000013975 #17	IGF1R (ENSMMSG00000014002) #18	ENSMMSG00000014049 #19	ENSMMSG00000014069 #19	TTC23 (ENSMMSG00000014084) #20	LRRC28 (ENSMMSG00000014116) #21	MEF2A (ENSMMSG00000014165) #22	ENSMMSG00000014308	LYSMD4 (ENSMMSG00000014321) #23	ADAMTS17 (ENSMMSG00000014339) #24	CERS3 (ENSMMSG00000014392) #25	LINS1 (ENSMMSG00000014428) #26	ASB7 (ENSMMSG00000014449) #28	ENSMMSG00000014474	ALDH1A3 (ENSMMSG00000014488) #29	LRRK1 (ENSMMSG00000014530) #30	CHSY1 (ENSMMSG00000014585) #31
Bovidae	ANCESTRAL SPECIES	20	ENSGT01080000257410.A.f #9	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000153342.b.j	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT00390000018141.i.a.b.b.b.b	ENSGT01100000263481.n.a.b.b	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000155607	ENSGT00940000156234.f	ENSGT00940000154713.A
Caprinae	ANCESTRAL SPECIES	22	ENSGT01080000257410.A.f #9	ENSGT01030000234535.F.a #10	ENSGT00730000111392 #11	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000153342.b.j	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771.h #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688.a #32	ENSGT00940000155607	ENSGT00940000156234.f	ENSGT00940000154713.A	ENSGT00940000157895	ENSGT00940000155050
Rambouillet Sheep	MODERN SPECIES	9	ST8SIA2 (ENSOARG00020006758) #10	FAM174B (ENSOARG00020006694) #11	CHD2 (ENSOARG00020006205) #12	RGMA (ENSOARG00020006145) #13	MCTP2 (ENSOARG00020006028) #14	ENSOARG00020006012	ENSOARG00020005988	NR2F2 (ENSOARG00020005894) #15	ENSOARG00020005874	ENSOARG00020005858	ARRDC4 (ENSOARG00020005803) #16	IGF1R (ENSOARG00020005176) #18	SYNM (ENSOARG00020005117) #19	TTC23 (ENSOARG00020005052) #20	ENSOARG00020004927 #21	MEF2A (ENSOARG00020004819) #22	LYSMD4 (ENSOARG00020004742) #23	ADAMTS17 (ENSOARG00020004620) #24	CERS3 (ENSOARG00020004593) #25	ASB7 (ENSOARG00020004526) #28	ENSOARG00020004515	ALDH1A3 (ENSOARG00020004379) #29	LRRK1 (ENSOARG00020003980) #30	ENSOARG00020003929 #31	ENSOARG00020003892 #32	ENSOARG00020003880	GABRG3 (ENSOARG00020003804)	GABRA5 (ENSOARG00020003769)	GABRB3 (ENSOARG00020003644)	ENSOARG00020003603	RPS25 (ENSOARG00020003579)
Goat	MODERN SPECIES	13	ENSCHIG00000008176	ENSCHIG00000009185	CHD2 (ENSCHIG00000022261) #12	RGMA (ENSCHIG00000014333) #13	MCTP2 (ENSCHIG00000024924) #14	NR2F2 (ENSCHIG00000023141) #15	ENSCHIG00000006032	ARRDC4 (ENSCHIG00000021973) #16	ENSCHIG00000011322	ENSCHIG00000016623	ENSCHIG00000022156 #17	IGF1R (ENSCHIG00000023990) #18	SYNM (ENSCHIG00000016711) #19	TTC23 (ENSCHIG00000014563) #20	ENSCHIG00000010197 #21	MEF2A (ENSCHIG00000024497) #22	LYSMD4 (ENSCHIG00000018838) #23	ADAMTS17 (ENSCHIG00000016863) #24	CERS3 (ENSCHIG00000025546) #25	LINS1 (ENSCHIG00000009033) #26	ASB7 (ENSCHIG00000009823) #28	ALDH1A3 (ENSCHIG00000020729) #29	LRRK1 (ENSCHIG00000024029) #30	CHSY1 (ENSCHIG00000026238) #31	ENSCHIG00000023492 #32	ENSCHIG00000023151	GABRG3 (ENSCHIG00000024578)	ENSCHIG00000014564	GABRA5 (ENSCHIG00000023746)	GABRB3 (ENSCHIG00000021468)	ENSCHIG00000022386
Bovinae	ANCESTRAL SPECIES	45	ENSGT00730000111392 #11	ENSGT01100000263514.B.m.b	ENSGT00940000158336	ENSGT00940000154451.l.b.b.a.b	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000160523 #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00390000009588.pb.a.a.b	ENSGT00940000155607	ENSGT00940000156234.f	ENSGT00940000154713.A	ENSGT00940000157895
American bison	MODERN SPECIES	3141									ARRDC4 (ENSBBBG00000006433) #16	ENSBBBG00000006456	ENSBBBG00000006470 #17	IGF1R (ENSBBBG00000006525) #18	ENSBBBG00000006816 #19	TTC23 (ENSBBBG00000024916) #20	LRRC28 (ENSBBBG00000024946) #21	MEF2A (ENSBBBG00000024972) #22	LYSMD4 (ENSBBBG00000024984) #23	ADAMTS17 (ENSBBBG00000025028) #24	CERS3 (ENSBBBG00000008075) #25	LINS1 (ENSBBBG00000025096) #26	ASB7 (ENSBBBG00000006653) #28	ENSBBBG00000025129	ALDH1A3 (ENSBBBG00000007771) #29	LRRK1 (ENSBBBG00000025376) #30	CHSY1 (ENSBBBG00000025389) #31	SELENOS (ENSBBBG00000025499) #32	ENSBBBG00000009671	GABRG3 (ENSBBBG00000009677)	ENSBBBG00000001576	ENSBBBG00000009690	GABRA5 (ENSBBBG00000009693)
Bos	ANCESTRAL SPECIES	18	ENSGT01100000263514.B.m.b	ENSGT00940000158336	ENSGT00940000154451.l.b.b.a.b	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00390000007133.ib.a.b	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000160523.d #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT00950000183841.a	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01100000263481.n.a.b.b.a.b.b.a.a.a.a.a	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00390000009588.pb.a.a.b	ENSGT00940000155607	ENSGT00940000156234.f
Bos_b	ANCESTRAL SPECIES	44			ENSGT00940000154451.l.b.b.a.b	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00390000007133.ib.a.b	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000160523.d #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT00950000183841.a	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01100000263481.n.a.b.b.a.b.b.a.a.a.a.a	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00390000009588.pb.a.a.b	ENSGT00940000155607	ENSGT00940000156234.f
Hybrid Bos Indicus	MODERN SPECIES	13	ENSBIXG00005022701	RGMA (ENSBIXG00005022721) #13	ENSBIXG00005022728	ENSBIXG00005022756	ENSBIXG00005007765	MCTP2 (ENSBIXG00005022868) #14	ENSBIXG00005022923	NR2F2 (ENSBIXG00005003928) #15	ARRDC4 (ENSBIXG00005006000) #16	ENSBIXG00005003959	ENSBIXG00005023207 #17	IGF1R (ENSBIXG00005023256) #18	SYNM (ENSBIXG00005003996) #19	TTC23 (ENSBIXG00005023444) #20	LRRC28 (ENSBIXG00005023571) #21	MEF2A (ENSBIXG00005023860) #22	LYSMD4 (ENSBIXG00005023954) #23	ADAMTS17 (ENSBIXG00005024103) #24	ENSBIXG00005024158	CERS3 (ENSBIXG00005024198) #25	ENSBIXG00005024210	LINS1 (ENSBIXG00005006486) #26	ASB7 (ENSBIXG00005024255) #28	ENSBIXG00005024290	ALDH1A3 (ENSBIXG00005024423) #29	LRRK1 (ENSBIXG00005006062) #30	ENSBIXG00005006488	CHSY1 (ENSBIXG00005024627) #31	SELENOS (ENSBIXG00005024692) #32	ENSBIXG00005024736	GABRG3 (ENSBIXG00005004245)
Cow	MODERN SPECIES	13	ENSBTAG00000048002	CHD2 (ENSBTAG00000017776) #12	CHD2 (ENSBTAG00000051831) #12	RGMA (ENSBTAG00000018603) #13	ENSBTAG00000027075	ENSBTAG00000033335	MCTP2 (ENSBTAG00000013689) #14	NR2F2 (ENSBTAG00000018007) #15	ARRDC4 (ENSBTAG00000018252) #16	ENSBTAG00000020514	PGPEP1L (ENSBTAG00000021531) #17	IGF1R (ENSBTAG00000021527) #18	SYNM (ENSBTAG00000011752) #19	TTC23 (ENSBTAG00000011185) #20	LRRC28 (ENSBTAG00000000539) #21	MEF2A (ENSBTAG00000010649) #22	LYSMD4 (ENSBTAG00000010192) #23	ADAMTS17 (ENSBTAG00000019823) #24	ENSBTAG00000049667	CERS3 (ENSBTAG00000006987) #25	LINS1 (ENSBTAG00000016495) #26	ASB7 (ENSBTAG00000010514) #28	ENSBTAG00000048684	ALDH1A3 (ENSBTAG00000009125) #29	LRRK1 (ENSBTAG00000001567) #30	CHSY1 (ENSBTAG00000007357) #31	SELENOS (ENSBTAG00000000640) #32	ENSBTAG00000034398	GABRG3 (ENSBTAG00000052298)	ENSBTAG00000035184	ENSBTAG00000051536
Bos_a	ANCESTRAL SPECIES	79			ENSGT00940000154451.l.b.b.a.b	ENSGT00940000155888 #12	ENSGT00950000183112.a #13	ENSGT00390000007133.ib.a.b	ENSGT00940000156291 #14	ENSGT00940000157540.A #15	ENSGT00940000160523.d #16	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT00950000183841.a	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00390000009588.pb.a.a.b.a	ENSGT00940000155607	ENSGT00940000156234.e.a	ENSGT00940000156234.f
Wild yak	MODERN SPECIES	146													ENSBMUG00000015857 #19	TTC23 (ENSBMUG00000015962) #20	LRRC28 (ENSBMUG00000016001) #21	MEF2A (ENSBMUG00000016030) #22	LYSMD4 (ENSBMUG00000016042) #23
Domestic yak	MODERN SPECIES	8	ENSBGRG00000006718	MCTP2 (ENSBGRG00000006575) #14	ENSBGRG00000006550	ENSBGRG00000006535	ENSBGRG00000006524	ENSBGRG00000006472	NR2F2 (ENSBGRG00000006400) #15	ARRDC4 (ENSBGRG00000006339) #16	ENSBGRG00000006316	ENSBGRG00000006286	ENSBGRG00000006259 #17	IGF1R (ENSBGRG00000006060) #18	SYNM (ENSBGRG00000005981) #19	TTC23 (ENSBGRG00000005798) #20	LRRC28 (ENSBGRG00000005615) #21	MEF2A (ENSBGRG00000005494) #22	LYSMD4 (ENSBGRG00000005456) #23	ADAMTS17 (ENSBGRG00000004987) #24	CERS3 (ENSBGRG00000004770) #25	LINS1 (ENSBGRG00000004716) #26	ASB7 (ENSBGRG00000004639) #28	ENSBGRG00000004632	ALDH1A3 (ENSBGRG00000004521) #29	LRRK1 (ENSBGRG00000004461) #30	CHSY1 (ENSBGRG00000004426) #31	SELENOS (ENSBGRG00000004321) #32	ENSBGRG00000004294	ENSBGRG00000004250	GABRG3 (ENSBGRG00000004154)	GABRA5 (ENSBGRG00000004069)	ENSBGRG00000004040
Suina	ANCESTRAL SPECIES	12	ENSGT00420000029820	ENSGT00940000161963	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00940000155312	ENSGT00390000009816	ENSGT00940000154209.a.a	ENSGT00940000154289.A.b	ENSGT00510000048902.b	ENSGT00390000015368.a.b #17	ENSGT00940000156682 #18	ENSGT00940000159268 #19	ENSGT00530000063847.a #20	ENSGT00940000157771 #21	ENSGT00940000156205 #22	ENSGT00940000160583 #23	ENSGT00940000158773 #24	ENSGT01030000234515.a.b.a.b #25	ENSGT00390000001790 #26	ENSGT00940000158068 #28	ENSGT00900000143686	ENSGT00940000158815 #29	ENSGT00940000160363 #30	ENSGT01050000244857.C.a.a #31	ENSGT00390000015688 #32	ENSGT00940000155607	ENSGT00940000156234.f	ENSGT00940000154713.A	ENSGT00940000157895	ENSGT00940000155050
Chacoan peccary	MODERN SPECIES	160																MEF2A (ENSCWAG00000009911) #22	LYSMD4 (ENSCWAG00000009871) #23	ADAMTS17 (ENSCWAG00000009807) #24	CERS3 (ENSCWAG00000009754) #25	ENSCWAG00000009711 #26	ASB7 (ENSCWAG00000009674) #28	ALDH1A3 (ENSCWAG00000009539) #29	LRRK1 (ENSCWAG00000009332) #30	CHSY1 (ENSCWAG00000009271) #31	SELENOS (ENSCWAG00000009194) #32	GABRG3 (ENSCWAG00000009036)	GABRA5 (ENSCWAG00000008932)	GABRB3 (ENSCWAG00000008459)	ATP10A (ENSCWAG00000008228)	UBE3A (ENSCWAG00000008186)
Pig	MODERN SPECIES		AQR (ENSSSCG00000004802)	ACTC1 (ENSSSCG00000004803)	GJD2 (ENSSSCG00000036219)	ENSSSCG00000004806	SCG5 (ENSSSCG00000004807)	GREM1 (ENSSSCG00000033657)	FMN1 (ENSSSCG00000044690)	ENSSSCG00000027232	ENSSSCG00000004811 #17	IGF1R (ENSSSCG00000030560) #18	ENSSSCG00000041479	ENSSSCG00000035223 #19	TTC23 (ENSSSCG00000004813) #20	ENSSSCG00000056777 #21	ENSSSCG00000004814 #21	MEF2A (ENSSSCG00000028771) #22	LYSMD4 (ENSSSCG00000030487) #23	ADAMTS17 (ENSSSCG00000038452) #24	ENSSSCG00000056799	CERS3 (ENSSSCG00000004819) #25	LINS1 (ENSSSCG00000004820) #26	ASB7 (ENSSSCG00000004821) #28	ENSSSCG00000038358	ALDH1A3 (ENSSSCG00000004822) #29	LRRK1 (ENSSSCG00000004823) #30	CHSY1 (ENSSSCG00000004825) #31	SELENOS (ENSSSCG00000004826) #32	GABRG3 (ENSSSCG00000035584)	GABRA5 (ENSSSCG00000004827)	GABRB3 (ENSSSCG00000038547)	ENSSSCG00000043519